Citrus Sinensis ID: 017377
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | 2.2.26 [Sep-21-2011] | |||||||
| Q3EC77 | 606 | Probable methyltransferas | yes | no | 0.973 | 0.597 | 0.678 | 1e-145 | |
| Q8GYW9 | 603 | Probable methyltransferas | no | no | 0.951 | 0.587 | 0.639 | 1e-138 | |
| Q9C9Q8 | 684 | Probable pectin methyltra | no | no | 0.916 | 0.498 | 0.539 | 1e-109 | |
| Q8VZV7 | 612 | Probable methyltransferas | no | no | 0.916 | 0.557 | 0.318 | 7e-52 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.728 | 0.451 | 0.364 | 1e-49 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.755 | 0.462 | 0.320 | 5e-49 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.758 | 0.452 | 0.331 | 7e-49 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.913 | 0.556 | 0.300 | 9e-49 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.739 | 0.403 | 0.353 | 2e-47 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.766 | 0.410 | 0.335 | 2e-47 |
| >sp|Q3EC77|PMT5_ARATH Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/364 (67%), Positives = 297/364 (81%), Gaps = 2/364 (0%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSY 59
MR W+ +S + G P + LL + +VAL+ +L TSN+ D +SS+ P+IYS+Y
Sbjct: 1 MRGSWYKSVSSVFGLRPRIRGLLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNY 60
Query: 60 RRLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRH 119
RR+KEQAAVDYL+LR+LSLG + KE CGKERE++VPCYN++ NLLAG +EGEE DRH
Sbjct: 61 RRIKEQAAVDYLDLRSLSLGASL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRH 119
Query: 120 CGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQ 179
C +RC+VRPP+DYKIPLRWP GRD+IWS NVKITKDQFLSSG++T RLMLLEENQ
Sbjct: 120 CEFEREKERCVVRPPRDYKIPLRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQ 179
Query: 180 IAFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL 239
I FHSEDGLVFDGVKDY+RQIAEMIGLG+D+EF QAGV++VLD+GCGFGSFGAHLVSLKL
Sbjct: 180 ITFHSEDGLVFDGVKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKL 239
Query: 240 MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGI 299
M +C+A YEATGSQVQLALERGLPAMIGNF S+QLPYP+LSFDMVHCAQCG WD K+ +
Sbjct: 240 MPICIAEYEATGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIKDAM 299
Query: 300 FLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFI 359
L+E DR+LKPGGYFVLTSP +K +G+ K S+ + E ++KICWSL AQQDETF+
Sbjct: 300 LLLEVDRVLKPGGYFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLTAQQDETFL 359
Query: 360 WQKT 363
WQKT
Sbjct: 360 WQKT 363
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/366 (63%), Positives = 290/366 (79%), Gaps = 12/366 (3%)
Query: 8 KLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQA 66
K++ ++G P +S LL L ++ALI +L ++ ++ T+ P +IYS+Y R+KEQA
Sbjct: 2 KVASVIGLRPRISGLLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQA 61
Query: 67 AVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHCGMSGLG 126
AVDYL+LR SLG R KE LCGKER+N+VPCYNV+ E DR+C +
Sbjct: 62 AVDYLDLRFFSLGVNRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFAREE 110
Query: 127 DRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSED 186
+RCLVRPP+DYKIPLRWP GRD+IW+ NVKITKDQFLSSG+MTKRLMLLEENQI FHS+D
Sbjct: 111 ERCLVRPPRDYKIPLRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDD 170
Query: 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAV 246
GL+FDGVKDY+ QIAEMIGLG+D+EF QAG+++VLD+GCGFGSFGAHLVSL +M +C+A
Sbjct: 171 GLIFDGVKDYAFQIAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAE 230
Query: 247 YEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADR 306
YE +GSQVQLALERGLPAMIGNF S+QLPYP+LSFDMVHCAQCGI WD K+ + L+E DR
Sbjct: 231 YETSGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAMLLLEVDR 290
Query: 307 LLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDA 366
+LKPGGYFVLTSP SK +G+S K S+ ++E ++KICWSL QQDETF+WQKT D
Sbjct: 291 VLKPGGYFVLTSPTSKAQGNSPDTKKTSISTRVDELSKKICWSLSGQQDETFLWQKTADP 350
Query: 367 HCYTSR 372
+CY+SR
Sbjct: 351 NCYSSR 356
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C9Q8|PMTT_ARATH Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/356 (53%), Positives = 261/356 (73%), Gaps = 15/356 (4%)
Query: 22 LLLCFLSI-VALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLG 79
L+L FL I + LI V+ + S +++SS+ +Y +YRRL+EQ D ++ +SLG
Sbjct: 80 LMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYRRLQEQLVSDLWDIGEISLG 139
Query: 80 TTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYKI 139
R KEL+ C E ENFVPC+NVS NL G+ G+E DR CG G CL PP Y++
Sbjct: 140 PNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFCG-PGSKQECLELPPVKYRV 198
Query: 140 PLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVKDYSRQ 199
PLRWP G+D+IW +NVKIT + +SSGS+TKR+M++E++QI+F S + D V+DYS Q
Sbjct: 199 PLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQISFRSASPMS-DEVEDYSHQ 257
Query: 200 IAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259
IAEMIG+ D+ F++AGV+++LD+GCG+GSFGAHL+S +++ +C+A YEA+GSQVQL LE
Sbjct: 258 IAEMIGIKKDN-FIEAGVRTILDIGCGYGSFGAHLLSKQILTMCIANYEASGSQVQLTLE 316
Query: 260 RGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
RGLPAMIG+FIS+QLPYPSLSFDM+HC +CGI WD+K+G+ L+E DR+LKPGGYFV TSP
Sbjct: 317 RGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQKDGLLLVEIDRVLKPGGYFVWTSP 376
Query: 320 ESKPRGSSSSRKNKSLLK---VMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
+ PR NK LK + +F E ICW+L+ QQDET +W+KT++ CY+SR
Sbjct: 377 LTNPR-------NKDHLKRWNFVHDFAESICWTLLNQQDETVVWKKTINTKCYSSR 425
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May be involved in the synthesis of homogalacturonan. Required for normal cell adhesion and plant development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/361 (31%), Positives = 195/361 (54%), Gaps = 20/361 (5%)
Query: 19 LSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL 78
+++L+ F++++ L + S+ F S K D + + + + L R + L
Sbjct: 16 FTYVLVGFIALLGLTCLYYGSS-----FAPGSRKSDEFDGSNN-RVRTGIGSLRNRDIVL 69
Query: 79 GTTR---PKELDLCGKERENFVPCYNVSANLLAGFKEG----EEFDRHCGMSGLGDRCLV 131
+R PK + +C +PC + + + K E ++ HC S CLV
Sbjct: 70 AVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLV 129
Query: 132 RPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFD 191
PP YKIPLRWP RD +W AN+ T L+ + M++ ++I F +
Sbjct: 130 PPPVGYKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGTHFHN 186
Query: 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG 251
G Y +A+M+ D +++VLDVGCG SFGA+L+S ++A+ +A +
Sbjct: 187 GADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQ 246
Query: 252 SQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPG 311
+Q+Q ALERG+P+ +G +++LPYPS SF++ HC++C I W +++GI L+E DRLL+PG
Sbjct: 247 NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPG 306
Query: 312 GYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTS 371
GYFV +SPE+ + +N+ + M + +++CW ++A++D++ IW K + CY
Sbjct: 307 GYFVYSSPEA----YAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLK 362
Query: 372 R 372
R
Sbjct: 363 R 363
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 162/291 (55%), Gaps = 20/291 (6%)
Query: 86 LDLCGKERENFVPCYNVS--ANLLAGFK--EGEEFDRHCGMSGLGDRCLVRPPKDYKIPL 141
+++C + ++PC+NV+ LL EE +RHC CLV PPKDYKIP+
Sbjct: 83 VNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPI 142
Query: 142 RWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVF-DGVKDYSRQI 200
RWP RD +W +NV T + G + E+ Q+ + G F G +Y +++
Sbjct: 143 RWPTSRDYVWRSNVNHTHLAEVKGGQN----WVHEQGQLWWFPGGGTHFKHGAPEYIQRL 198
Query: 201 AEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260
M T + L AGV+ VLDVGCG SF A+L+ L + + A + +Q+Q ALER
Sbjct: 199 GNMTTNET-GDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALER 257
Query: 261 GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320
G+ AMI ++Q+PYP+ SFDMVHC++C + W + +G+ + E +RLL+P GYFV ++P
Sbjct: 258 GIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP- 316
Query: 321 SKPRGSSSSRKNKSLLKVMEE---FTEKICWSLIAQQDETFIWQKTVDAHC 368
+ RK+K + ++ T +CW LI+++ +T IW K D C
Sbjct: 317 ------PAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEAC 361
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 159/296 (53%), Gaps = 15/296 (5%)
Query: 83 PKELDLCGKERENFVPCYNVSANLLAGFKEG------EEFDRHCGMSGLGDRCLVRPPKD 136
P+ +C +PC + NL+ + E ++RHC CL+ PP
Sbjct: 73 PRSFPVCDDRHSELIPC--LDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNG 130
Query: 137 YKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVKDY 196
YK+P++WP RD +W N+ T L+ + M+++ ++I F G Y
Sbjct: 131 YKVPIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY 187
Query: 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL 256
+A M+ + +++V DVGCG SFG +L+S ++ + +A + +Q+Q
Sbjct: 188 IASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQF 247
Query: 257 ALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
ALERG+PA +G +++LPYPS SF++ HC++C I W +++GI L+E DR+L+PGGYF
Sbjct: 248 ALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAY 307
Query: 317 TSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
+SPE+ + R + + M E++CW + A++++T IWQK + CY R
Sbjct: 308 SSPEAYAQDEEDLR----IWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLER 359
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 11/293 (3%)
Query: 84 KELDLCGKERENFVPCYN----VSANLLAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYKI 139
K +C +PC + L E ++RHC CL+ PP YK+
Sbjct: 82 KSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKV 141
Query: 140 PLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVKDYSRQ 199
P++WP RD +W AN+ T L+ + M+ + +I+F G Y
Sbjct: 142 PIKWPKSRDEVWKANIPHT---HLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIAS 198
Query: 200 IAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259
IA M+ D + +++VLDVGCG SFGA+L++ +M + +A + +Q+Q ALE
Sbjct: 199 IANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALE 258
Query: 260 RGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
RG+PA +G +++LPYPS SF+ HC++C I W +++G+ L+E DR+L+PGGYF +SP
Sbjct: 259 RGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSP 318
Query: 320 ESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
E+ + +N + K M E++CW + ++++T +WQK + CY R
Sbjct: 319 EA----YAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLER 367
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 184/359 (51%), Gaps = 19/359 (5%)
Query: 22 LLLCFLSIVALIAVL--GSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLG 79
+LLC S+V + L GSS +++ + + ++ Y+E + G
Sbjct: 15 VLLCVASVVLVFVYLFFGSSNHKAIEYGRKLGLGGDDDDSTKKDDTSSSFYVE-DVVGNG 73
Query: 80 TTRPKELDLCGKERENFVPCYNVSANLLAGFKEG------EEFDRHCGMSGLGDRCLVRP 133
T P+ +C +PC + NL+ + E ++RHC CL+ P
Sbjct: 74 FT-PRSFPVCDDRHSELIPC--LDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPP 130
Query: 134 PKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGV 193
P YKIP++WP RD +W N+ T L+ + M+++ +I F G
Sbjct: 131 PPGYKIPIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGA 187
Query: 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQ 253
Y +A M+ + +++ LDVGCG SFG +L++ ++M + +A + +Q
Sbjct: 188 DKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQ 247
Query: 254 VQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGY 313
+Q ALERG+PA +G +++LPYPS SF++ HC++C I W +++GI L+E DR+L+PGGY
Sbjct: 248 IQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGY 307
Query: 314 FVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
F +SPE+ + R + + M ++CW++ A++++T IWQK + CY R
Sbjct: 308 FAYSSPEAYAQDEEDLR----IWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGR 362
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 159/294 (54%), Gaps = 19/294 (6%)
Query: 84 KELDLCGKERENFVPCY-NVSA-NLLAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYKIPL 141
++ ++C + ++PC NV A L GE F+R+C G+G C V P+ Y+ P+
Sbjct: 147 RKFEICSENMTEYIPCLDNVEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRSPI 206
Query: 142 RWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVKDYSRQIA 201
WP RD +W NV TK L + + E ++ F G Y QI+
Sbjct: 207 PWPRSRDEVWFNNVPHTK---LVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQIS 263
Query: 202 EMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG 261
+MI D F + VLD+GCG SFGA+L+S ++ + +A + +Q+Q ALERG
Sbjct: 264 QMI---PDISFGNH-TRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERG 319
Query: 262 LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321
+PAM+ F +R+L YPS +FD+VHC++C I W + +GI L+E +R+L+ GGYFV +
Sbjct: 320 VPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA--- 376
Query: 322 KPRGSSSSRKNKSLLKVMEE---FTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
+ K+L + EE T ++CW L+ ++ IWQK V+ CY SR
Sbjct: 377 ----QPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSR 426
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 160/298 (53%), Gaps = 13/298 (4%)
Query: 77 SLGTTRPKELDLCGKERENFVPCYNVSANL--LAGFKEGEEFDRHCGMSGLGDRCLVRPP 134
S R K+ +C + ++PC + + + L + GE F+RHC G G CLV PP
Sbjct: 168 SKARVRIKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPP 227
Query: 135 KDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVK 194
K Y+ P+ WP RD +W +NV T+ L + + ++N+ F G
Sbjct: 228 KGYRQPIPWPKSRDEVWFSNVPHTR---LVEDKGGQNWISRDKNKFKFPGGGTQFIHGAD 284
Query: 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV 254
Y Q+++M+ +D F + ++ +DVGCG SFGA+L+S +M + VA + +Q+
Sbjct: 285 QYLDQMSKMV---SDITFGKH-IRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQI 340
Query: 255 QLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYF 314
Q ALERG+PAM F +R+L YPS +FD++HC++C I W + +GI L+E +R+L+ GGYF
Sbjct: 341 QFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYF 400
Query: 315 VLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
+ + + +L + T +CW L+ ++ IWQK + CY SR
Sbjct: 401 AWAAQPVYKHEPALEEQWTEMLNL----TISLCWKLVKKEGYVAIWQKPFNNDCYLSR 454
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| 255542060 | 620 | ATP binding protein, putative [Ricinus c | 1.0 | 0.6 | 0.814 | 1e-178 | |
| 224112126 | 617 | predicted protein [Populus trichocarpa] | 1.0 | 0.602 | 0.790 | 1e-177 | |
| 297738060 | 429 | unnamed protein product [Vitis vinifera] | 1.0 | 0.867 | 0.830 | 1e-177 | |
| 359472802 | 620 | PREDICTED: probable methyltransferase PM | 1.0 | 0.6 | 0.830 | 1e-177 | |
| 356494969 | 623 | PREDICTED: probable methyltransferase PM | 1.0 | 0.597 | 0.720 | 1e-164 | |
| 356499881 | 623 | PREDICTED: probable methyltransferase PM | 1.0 | 0.597 | 0.720 | 1e-164 | |
| 449478364 | 653 | PREDICTED: probable methyltransferase PM | 0.991 | 0.565 | 0.720 | 1e-161 | |
| 449434732 | 656 | PREDICTED: probable methyltransferase PM | 0.991 | 0.562 | 0.720 | 1e-161 | |
| 357475025 | 628 | hypothetical protein MTR_4g083030 [Medic | 0.997 | 0.590 | 0.717 | 1e-159 | |
| 356577083 | 600 | PREDICTED: probable methyltransferase PM | 0.997 | 0.618 | 0.690 | 1e-152 |
| >gi|255542060|ref|XP_002512094.1| ATP binding protein, putative [Ricinus communis] gi|223549274|gb|EEF50763.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/372 (81%), Positives = 338/372 (90%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRSPWFNKLS+ILG PP SWLLLC + ++A+IA+LGS++S+ D T++ PDIYS+YR
Sbjct: 1 MRSPWFNKLSLILGPRPPFSWLLLCLICLLAVIAILGSTSSSAFDSATNTPVPDIYSNYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
RLKEQAAVDYLELRTLSLG TR KEL LCG+E E++VPCYNVSANLLAGFK+GEEFDRHC
Sbjct: 61 RLKEQAAVDYLELRTLSLGATRQKELGLCGREIEHYVPCYNVSANLLAGFKDGEEFDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
MS RCLVRPPKDYKIPLRWPAGRDVIWS NVK+TKDQFLSSGSMTKRLMLLEENQI
Sbjct: 121 EMSRPTYRCLVRPPKDYKIPLRWPAGRDVIWSGNVKLTKDQFLSSGSMTKRLMLLEENQI 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDGL+FDGVKDYSRQIAEMIGLG+DSEF+QAGVQ+VLD+GCGFGSFGAHLVSL LM
Sbjct: 181 AFHSEDGLIFDGVKDYSRQIAEMIGLGSDSEFVQAGVQTVLDIGCGFGSFGAHLVSLNLM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
AVC+A YEATGSQVQLALERGLPAMIGNF SRQLPYPSLSFDMVHCAQCGIIWD+K+G+F
Sbjct: 241 AVCIAAYEATGSQVQLALERGLPAMIGNFKSRQLPYPSLSFDMVHCAQCGIIWDEKDGMF 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP SKP GSS + K +S ++++E+ TEKICWSL+AQQDETFIW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPMSKPHGSSLNMKKRSTVELIEDLTEKICWSLLAQQDETFIW 360
Query: 361 QKTVDAHCYTSR 372
QKTVD HCY SR
Sbjct: 361 QKTVDIHCYKSR 372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112126|ref|XP_002316092.1| predicted protein [Populus trichocarpa] gi|222865132|gb|EEF02263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/372 (79%), Positives = 328/372 (88%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRSPWFNK ILG PP+S LLLCF+ ++ LIA+LGS++S+ D VT PD+YSSYR
Sbjct: 1 MRSPWFNKPFAILGPRPPISCLLLCFVCVLGLIAILGSTSSSVFDSVTPIPLPDVYSSYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
RLKEQAAVDYLELRT+SLG R EL+LCG+E+EN+VPCYNVSANL AGFK+GEEFDRHC
Sbjct: 61 RLKEQAAVDYLELRTISLGAGRQTELELCGREKENYVPCYNVSANLFAGFKDGEEFDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+S +RCLVRPPKDYKIPLRWPAGRD IWSANVKITKDQFLSSGS+TKRLML+EENQ
Sbjct: 121 EISRQRERCLVRPPKDYKIPLRWPAGRDAIWSANVKITKDQFLSSGSLTKRLMLVEENQF 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDGLVFDG+KDYSRQ+AEMIGLG+DSEFLQAGVQSVLD+GCGFG FGAHLVSLKLM
Sbjct: 181 AFHSEDGLVFDGLKDYSRQVAEMIGLGSDSEFLQAGVQSVLDIGCGFGIFGAHLVSLKLM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
+C+A YEATGSQVQLALERGLPAMIGNFISRQLPYP LSFDMVHCAQCGI+WD+K+G+
Sbjct: 241 PICIAAYEATGSQVQLALERGLPAMIGNFISRQLPYPPLSFDMVHCAQCGIVWDEKDGML 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP S P GSSS+ K +S L EEF+E ICW+LIAQQDETFIW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPASNPHGSSSNTKKRSTLTPTEEFSENICWNLIAQQDETFIW 360
Query: 361 QKTVDAHCYTSR 372
QKTVD HCY SR
Sbjct: 361 QKTVDVHCYKSR 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738060|emb|CBI27261.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/372 (83%), Positives = 340/372 (91%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS W NKLSVILG PP+SWLLLC +S++ALIAVLGSS+SN+ + VTS PDIY++YR
Sbjct: 1 MRSSWINKLSVILGPRPPVSWLLLCLISVLALIAVLGSSSSNSFESVTSIPVPDIYTNYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
RLKEQAA+DYLELRTLSLG +R +EL LCGKE EN+VPCYNVSANLLAGFK+GEEFDRHC
Sbjct: 61 RLKEQAAIDYLELRTLSLGVSRQRELGLCGKELENYVPCYNVSANLLAGFKDGEEFDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+S G RCLVRPPKDYKIPLRWPAGRDVIWS NVKITKDQFLSSGSMTKRLMLLEENQI
Sbjct: 121 ELSRDGQRCLVRPPKDYKIPLRWPAGRDVIWSGNVKITKDQFLSSGSMTKRLMLLEENQI 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDGL FDGVK+YSRQIAEMIGLG+DSEFLQAGV++VLD+GCGFGSF AHLVSLKLM
Sbjct: 181 AFHSEDGLNFDGVKEYSRQIAEMIGLGSDSEFLQAGVRTVLDIGCGFGSFAAHLVSLKLM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
AVC+A YEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK++G+F
Sbjct: 241 AVCIAEYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKRDGMF 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP SKPRGSSSS K S+L +EE T++ICWSL+AQQDET IW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPTSKPRGSSSSTKKGSVLTPIEELTQRICWSLLAQQDETLIW 360
Query: 361 QKTVDAHCYTSR 372
QKT+D HCYTSR
Sbjct: 361 QKTMDVHCYTSR 372
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472802|ref|XP_002271275.2| PREDICTED: probable methyltransferase PMT5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/372 (83%), Positives = 340/372 (91%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS W NKLSVILG PP+SWLLLC +S++ALIAVLGSS+SN+ + VTS PDIY++YR
Sbjct: 1 MRSSWINKLSVILGPRPPVSWLLLCLISVLALIAVLGSSSSNSFESVTSIPVPDIYTNYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
RLKEQAA+DYLELRTLSLG +R +EL LCGKE EN+VPCYNVSANLLAGFK+GEEFDRHC
Sbjct: 61 RLKEQAAIDYLELRTLSLGVSRQRELGLCGKELENYVPCYNVSANLLAGFKDGEEFDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+S G RCLVRPPKDYKIPLRWPAGRDVIWS NVKITKDQFLSSGSMTKRLMLLEENQI
Sbjct: 121 ELSRDGQRCLVRPPKDYKIPLRWPAGRDVIWSGNVKITKDQFLSSGSMTKRLMLLEENQI 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDGL FDGVK+YSRQIAEMIGLG+DSEFLQAGV++VLD+GCGFGSF AHLVSLKLM
Sbjct: 181 AFHSEDGLNFDGVKEYSRQIAEMIGLGSDSEFLQAGVRTVLDIGCGFGSFAAHLVSLKLM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
AVC+A YEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK++G+F
Sbjct: 241 AVCIAEYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKRDGMF 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP SKPRGSSSS K S+L +EE T++ICWSL+AQQDET IW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPTSKPRGSSSSTKKGSVLTPIEELTQRICWSLLAQQDETLIW 360
Query: 361 QKTVDAHCYTSR 372
QKT+D HCYTSR
Sbjct: 361 QKTMDVHCYTSR 372
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356494969|ref|XP_003516353.1| PREDICTED: probable methyltransferase PMT4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 268/372 (72%), Positives = 320/372 (86%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS WFNKLS+I+G PP++WL LC +S++ LI VLGSS+SN D IY++YR
Sbjct: 1 MRSSWFNKLSIIIGPRPPVNWLFLCLISLLVLIVVLGSSSSNIDDQAPDIPVSLIYTNYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
R+KEQA VDYLELR+++ G +R +E DLCGKERENFVPCYNVSANLLAGFK+GEEFDRHC
Sbjct: 61 RVKEQAVVDYLELRSVARGVSRQREFDLCGKERENFVPCYNVSANLLAGFKDGEEFDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+ +RCLVRPPK+YKIPL+WPAGRDVIWS NVKITK+QFL+SGSMTKRLMLLEENQI
Sbjct: 121 ELLVEAERCLVRPPKEYKIPLQWPAGRDVIWSGNVKITKNQFLASGSMTKRLMLLEENQI 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDGL++DG+KDYSRQ+AEMIGLG+D+E QAGV+++LD+ CGFGSF AHL SLK+M
Sbjct: 181 AFHSEDGLIYDGMKDYSRQLAEMIGLGSDNELPQAGVRTILDINCGFGSFAAHLASLKIM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
VC+A YEATGSQVQLALERGLPA+IGNF++RQL YPSLS+DMVHCAQCGIIWD K+G F
Sbjct: 241 TVCIAPYEATGSQVQLALERGLPAVIGNFVARQLSYPSLSYDMVHCAQCGIIWDGKDGRF 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP S+ +GSSS K +++L MEE T+++CW+L+AQQDETFIW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPTSRSQGSSSQMKRRNMLMPMEELTQQLCWTLLAQQDETFIW 360
Query: 361 QKTVDAHCYTSR 372
QKT D +CY R
Sbjct: 361 QKTADVNCYAYR 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499881|ref|XP_003518764.1| PREDICTED: probable methyltransferase PMT4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 268/372 (72%), Positives = 319/372 (85%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS WFNKLS+I+G PP++WL L +S++ LI VLGSS+SN +D IY++YR
Sbjct: 1 MRSSWFNKLSIIIGPRPPVNWLFLWLMSLLVLIVVLGSSSSNIVDPAPHIPVSLIYTNYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
R+KEQAAVDYLELR+++ G +R +E DLCGKERENFVPCYNVSA+LLAGFK+GEEFDRHC
Sbjct: 61 RVKEQAAVDYLELRSVAQGVSRQREFDLCGKERENFVPCYNVSASLLAGFKDGEEFDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+ +RCLVRPPK+YKIPL+WP RDVIWS NVKITK+QFLSSGSMTKRLMLLEENQI
Sbjct: 121 ELLVEAERCLVRPPKEYKIPLQWPTARDVIWSGNVKITKNQFLSSGSMTKRLMLLEENQI 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDGL++DG+KDYSRQ+AEMIGLG+D E QAGV ++LDV CGFGSF AHL LK+M
Sbjct: 181 AFHSEDGLIYDGMKDYSRQLAEMIGLGSDYELPQAGVHTILDVNCGFGSFAAHLAPLKIM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
VC+A YEATGSQVQLALERGLPA+IGNFI+RQLPYPSLS+DMVHCAQCGIIWD+K+G+F
Sbjct: 241 TVCIAPYEATGSQVQLALERGLPAVIGNFIARQLPYPSLSYDMVHCAQCGIIWDEKDGMF 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP S+ +GSSS K +++L ME+ T+K+CW+ +AQQDETFIW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPTSRSQGSSSQMKRRNMLMPMEQLTQKLCWTPLAQQDETFIW 360
Query: 361 QKTVDAHCYTSR 372
QKT D +CY SR
Sbjct: 361 QKTADVNCYESR 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478364|ref|XP_004155297.1| PREDICTED: probable methyltransferase PMT4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/372 (72%), Positives = 312/372 (83%), Gaps = 3/372 (0%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS W NK+SVILG PP SWL+LC +S++ALIAVLG+STSN D VT++ DIY+SYR
Sbjct: 33 MRSSWVNKISVILGSKPPFSWLILCLISVLALIAVLGTSTSNAFDSVTTTPVSDIYASYR 92
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
R KE+AA+D +L++LSL TTR KE LCGKEREN VPCYNV+ANLLAG+KEGEE+DRHC
Sbjct: 93 RQKERAAIDLFDLKSLSLATTRLKEFGLCGKERENHVPCYNVTANLLAGYKEGEEYDRHC 152
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+S RCLVRPPKDYKIPL WP GRD+IWS NVK+T+DQ LSSGS TKRLMLLEENQI
Sbjct: 153 EVSRTAQRCLVRPPKDYKIPLSWPVGRDIIWSGNVKVTRDQLLSSGSPTKRLMLLEENQI 212
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDG DGVK+YS QIAEMIGLG+DSEF QAGV+S+LD+GCGFGS GAHL+SL +M
Sbjct: 213 AFHSEDG---DGVKEYSFQIAEMIGLGSDSEFFQAGVRSILDIGCGFGSLGAHLISLNVM 269
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
+C+A YEATGSQVQ+ALERGLPAM+GNF+++QLPYPSLSFDMVHCAQC I W+ K GIF
Sbjct: 270 VMCIATYEATGSQVQMALERGLPAMLGNFVTKQLPYPSLSFDMVHCAQCDISWNDKGGIF 329
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIEADRLL+PGGYFVLTSP K G S S K ++L +EE T+K+CW L+AQQ ET+IW
Sbjct: 330 LIEADRLLRPGGYFVLTSPTGKTIGGSLSSKKTNILTPLEEMTKKLCWILLAQQYETYIW 389
Query: 361 QKTVDAHCYTSR 372
QKT D HCY SR
Sbjct: 390 QKTTDPHCYFSR 401
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434732|ref|XP_004135150.1| PREDICTED: probable methyltransferase PMT4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/372 (72%), Positives = 312/372 (83%), Gaps = 3/372 (0%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS W NK+SVILG PP SWL+LC +S++ALIAVLG+STSN D VT++ DIY+SYR
Sbjct: 33 MRSSWVNKISVILGSKPPFSWLILCLISVLALIAVLGTSTSNAFDSVTTTPVSDIYASYR 92
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
R KE+AA+D +L++LSL TTR KE LCGKEREN VPCYNV+ANLLAG+KEGEE+DRHC
Sbjct: 93 RQKERAAIDLFDLKSLSLATTRLKEFGLCGKERENHVPCYNVTANLLAGYKEGEEYDRHC 152
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+S RCLVRPPKDYKIPL WP GRD+IWS NVK+T+DQ LSSGS TKRLMLLEENQI
Sbjct: 153 EVSRTAQRCLVRPPKDYKIPLSWPVGRDIIWSGNVKVTRDQLLSSGSPTKRLMLLEENQI 212
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHSEDG DGVK+YS QIAEMIGLG+DSEF QAGV+S+LD+GCGFGS GAHL+SL +M
Sbjct: 213 AFHSEDG---DGVKEYSFQIAEMIGLGSDSEFFQAGVRSILDIGCGFGSLGAHLISLNVM 269
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
+C+A YEATGSQVQ+ALERGLPAM+GNF+++QLPYPSLSFDMVHCAQC I W+ K GIF
Sbjct: 270 VMCIATYEATGSQVQMALERGLPAMLGNFVTKQLPYPSLSFDMVHCAQCDISWNDKGGIF 329
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIEADRLL+PGGYFVLTSP K G S S K ++L +EE T+K+CW L+AQQ ET+IW
Sbjct: 330 LIEADRLLRPGGYFVLTSPTGKTIGGSLSSKKTNILTPLEEMTKKLCWILLAQQYETYIW 389
Query: 361 QKTVDAHCYTSR 372
QKT D HCY SR
Sbjct: 390 QKTTDPHCYFSR 401
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475025|ref|XP_003607798.1| hypothetical protein MTR_4g083030 [Medicago truncatula] gi|355508853|gb|AES89995.1| hypothetical protein MTR_4g083030 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/372 (71%), Positives = 317/372 (85%), Gaps = 1/372 (0%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYR 60
MRS NKL +I G P L+WL+L +SI+A I + GSS+SN +D IY++YR
Sbjct: 1 MRSSLLNKLWMIFGPKPKLNWLILSVISILAFITLFGSSSSNAIDTSPRRQASLIYTNYR 60
Query: 61 RLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHC 120
R+KE+ AVDYLEL+++S G + KEL LCGKERENFVPC+NV+ANLL+GF++GEE DRHC
Sbjct: 61 RIKERVAVDYLELKSVSSGGLKQKELGLCGKERENFVPCHNVTANLLSGFEQGEELDRHC 120
Query: 121 GMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQI 180
+S DRCLVRPPK+YKIPLRWP GRD+IWS NVKITKDQFLSSGSMTKRLMLLEENQI
Sbjct: 121 QVSREEDRCLVRPPKEYKIPLRWPRGRDIIWSGNVKITKDQFLSSGSMTKRLMLLEENQI 180
Query: 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
AFHS+DGL+FDGVKDYSRQIAEMIGLG+D+E QAGV+++LD+ CGFGSFGAHL+SLK+M
Sbjct: 181 AFHSQDGLIFDGVKDYSRQIAEMIGLGSDTELPQAGVRTMLDINCGFGSFGAHLLSLKIM 240
Query: 241 AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIF 300
AVCVA YEATGSQVQL+LERGLPAMIGNFI+RQLPYPSLS+DMVHCAQCGI WD+K+G+F
Sbjct: 241 AVCVAAYEATGSQVQLSLERGLPAMIGNFIARQLPYPSLSYDMVHCAQCGISWDEKDGMF 300
Query: 301 LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIW 360
LIE DR+LKPGGYFVLTSP SK +GSS +K+ + L MEE T+++CW+L+AQQDETFIW
Sbjct: 301 LIEVDRVLKPGGYFVLTSPTSKLQGSSREKKSIT-LNPMEEHTQQLCWTLLAQQDETFIW 359
Query: 361 QKTVDAHCYTSR 372
QKT D CY SR
Sbjct: 360 QKTADLDCYASR 371
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577083|ref|XP_003556657.1| PREDICTED: probable methyltransferase PMT5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/378 (69%), Positives = 317/378 (83%), Gaps = 7/378 (1%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSKPD-----I 55
MRS W K S ++G PPL+WL+L +S++ALIAVL SS+S +SS+ I
Sbjct: 1 MRSSWLKKQSFVIGHKPPLNWLILFLISLLALIAVLSSSSSPLSSSKKNSSRRTTVESLI 60
Query: 56 YSSYRRLKEQAAVDYLELRTLS-LGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGE 114
Y+SYRR++EQAAVDYLELR +S G R KE+ LC KERENFVPC+NVSANL+AGFK+GE
Sbjct: 61 YTSYRRIEEQAAVDYLELRAVSSAGGARQKEVGLCRKERENFVPCHNVSANLVAGFKDGE 120
Query: 115 EFDRHCGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLML 174
EFDRHC + ++CLVRPPK+YK PL+WPAGRDVIWS NVKITKDQFLSSGSMTKRLML
Sbjct: 121 EFDRHCEVYKGTEKCLVRPPKEYKAPLQWPAGRDVIWSGNVKITKDQFLSSGSMTKRLML 180
Query: 175 LEENQIAFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHL 234
LEENQIAFH+EDG +F+ VKDY+RQ+AEMIGLG+D+E QAG++++LD+ CGFGSFGAHL
Sbjct: 181 LEENQIAFHAEDGTIFNSVKDYTRQLAEMIGLGSDTELPQAGIRNILDINCGFGSFGAHL 240
Query: 235 VSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294
+SLK+MAVC+A YEATGSQVQL+LERGLPAMIGNFISRQLPYPSLS+DMVHCAQCGI+WD
Sbjct: 241 LSLKIMAVCIAAYEATGSQVQLSLERGLPAMIGNFISRQLPYPSLSYDMVHCAQCGIMWD 300
Query: 295 KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354
+K G+FL+E DR+LKPGGYFVLTSP S+P+GSS +K + + +E T+++CW+L+AQQ
Sbjct: 301 EKNGMFLVEVDRVLKPGGYFVLTSPTSRPQGSSREKK-RIMANPIEGLTQQLCWTLLAQQ 359
Query: 355 DETFIWQKTVDAHCYTSR 372
DETFIWQKT D CY SR
Sbjct: 360 DETFIWQKTADIDCYASR 377
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| TAIR|locus:2063798 | 606 | QUL2 "QUASIMODO2 LIKE 2" [Arab | 0.997 | 0.612 | 0.659 | 2.9e-135 | |
| TAIR|locus:2014789 | 603 | QUL1 "QUASIMODO2 LIKE 1" [Arab | 0.951 | 0.587 | 0.620 | 6.5e-122 | |
| TAIR|locus:2032130 | 684 | TSD2 "TUMOROUS SHOOT DEVELOPME | 0.922 | 0.501 | 0.522 | 9.4e-98 | |
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.919 | 0.558 | 0.315 | 1.1e-48 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.881 | 0.546 | 0.331 | 3.4e-45 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.766 | 0.410 | 0.338 | 7.4e-44 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.930 | 0.566 | 0.296 | 8.1e-44 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.755 | 0.451 | 0.319 | 1.3e-43 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.747 | 0.407 | 0.347 | 1.3e-43 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.873 | 0.549 | 0.337 | 3.5e-43 |
| TAIR|locus:2063798 QUL2 "QUASIMODO2 LIKE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 246/373 (65%), Positives = 294/373 (78%)
Query: 1 MRSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSY 59
MR W+ +S + G P + LL + +VAL+ +L TSN+ D +SS+ P+IYS+Y
Sbjct: 1 MRGSWYKSVSSVFGLRPRIRGLLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNY 60
Query: 60 RRLKEQAAVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRH 119
RR+KEQAAVDYL+LR+LSLG + KE CGKERE++VPCYN++ NLLAG +EGEE DRH
Sbjct: 61 RRIKEQAAVDYLDLRSLSLGASL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRH 119
Query: 120 CGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQ 179
C +RC+VRPP+DYKIPLRWP GRD+IWS NVKITKDQFLSSG++T RLMLLEENQ
Sbjct: 120 CEFEREKERCVVRPPRDYKIPLRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQ 179
Query: 180 IAFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL 239
I FHSEDGLVFDGVKDY+RQIAEMIGLG+D+EF QAGV++VLD+GCGFGSFGAHLVSLKL
Sbjct: 180 ITFHSEDGLVFDGVKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKL 239
Query: 240 MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGI 299
M +C+A YEATGSQVQLALERGLPAMIGNF S+QLPYP+LSFDMVHCAQCG WD K+ +
Sbjct: 240 MPICIAEYEATGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIKDAM 299
Query: 300 FLIEADRLLKPGGYFVLTXXXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFI 359
L+E DR+LKPGGYFVLT + E ++KICWSL AQQDETF+
Sbjct: 300 LLLEVDRVLKPGGYFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLTAQQDETFL 359
Query: 360 WQKTVDAHCYTSR 372
WQKT D+ CY+SR
Sbjct: 360 WQKTSDSSCYSSR 372
|
|
| TAIR|locus:2014789 QUL1 "QUASIMODO2 LIKE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 227/366 (62%), Positives = 278/366 (75%)
Query: 8 KLSVILGRGPPLSWLLLCFLSIVALIAVL-GSSTSNTLDFVTSSSKPDIYSSYRRLKEQA 66
K++ ++G P +S LL L ++ALI +L +S S++ T +IYS+Y R+KEQA
Sbjct: 2 KVASVIGLRPRISGLLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQA 61
Query: 67 AVDYLELRTLSLGTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHCGMSGLG 126
AVDYL+LR SLG R KE LCGKER+N+VPCYNV+ E DR+C +
Sbjct: 62 AVDYLDLRFFSLGVNRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFAREE 110
Query: 127 DRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSED 186
+RCLVRPP+DYKIPLRWP GRD+IW+ NVKITKDQFLSSG+MTKRLMLLEENQI FHS+D
Sbjct: 111 ERCLVRPPRDYKIPLRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDD 170
Query: 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAV 246
GL+FDGVKDY+ QIAEMIGLG+D+EF QAG+++VLD+GCGFGSFGAHLVSL +M +C+A
Sbjct: 171 GLIFDGVKDYAFQIAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAE 230
Query: 247 YEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADR 306
YE +GSQVQLALERGLPAMIGNF S+QLPYP+LSFDMVHCAQCGI WD K+ + L+E DR
Sbjct: 231 YETSGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAMLLLEVDR 290
Query: 307 LLKPGGYFVLTXXXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDA 366
+LKPGGYFVLT ++E ++KICWSL QQDETF+WQKT D
Sbjct: 291 VLKPGGYFVLTSPTSKAQGNSPDTKKTSISTRVDELSKKICWSLSGQQDETFLWQKTADP 350
Query: 367 HCYTSR 372
+CY+SR
Sbjct: 351 NCYSSR 356
|
|
| TAIR|locus:2032130 TSD2 "TUMOROUS SHOOT DEVELOPMENT 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 185/354 (52%), Positives = 254/354 (71%)
Query: 22 LLLCFLSI-VALIAVLGSSTSN--TLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL 78
L+L FL I + LI V+ + S T+ +++SS+ +Y +YRRL+EQ D ++ +SL
Sbjct: 80 LMLLFLKISLVLIVVIALAGSFWWTIS-ISTSSRGHVYHNYRRLQEQLVSDLWDIGEISL 138
Query: 79 GTTRPKELDLCGKERENFVPCYNVSANLLAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYK 138
G R KEL+ C E ENFVPC+NVS NL G+ G+E DR CG G CL PP Y+
Sbjct: 139 GPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFCG-PGSKQECLELPPVKYR 197
Query: 139 IPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVKDYSR 198
+PLRWP G+D+IW +NVKIT + +SSGS+TKR+M++E++QI+F S + D V+DYS
Sbjct: 198 VPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQISFRSASPMS-DEVEDYSH 256
Query: 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258
QIAEMIG+ D+ F++AGV+++LD+GCG+GSFGAHL+S +++ +C+A YEA+GSQVQL L
Sbjct: 257 QIAEMIGIKKDN-FIEAGVRTILDIGCGYGSFGAHLLSKQILTMCIANYEASGSQVQLTL 315
Query: 259 ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTX 318
ERGLPAMIG+FIS+QLPYPSLSFDM+HC +CGI WD+K+G+ L+E DR+LKPGGYFV T
Sbjct: 316 ERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQKDGLLLVEIDRVLKPGGYFVWTS 375
Query: 319 XXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
+ +F E ICW+L+ QQDET +W+KT++ CY+SR
Sbjct: 376 PLTNPRNKDHLKRWNF----VHDFAESICWTLLNQQDETVVWKKTINTKCYSSR 425
|
|
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 115/365 (31%), Positives = 189/365 (51%)
Query: 17 PPL-SWLLLCFLSIVALIAVL-GSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELR 74
P L +++L+ F++++ L + GSS F S K D + + + + L R
Sbjct: 13 PKLFTYVLVGFIALLGLTCLYYGSS------FAPGSRKSDEFDGSNN-RVRTGIGSLRNR 65
Query: 75 TLSLGTTR---PKELDLCGKERENFVPCYNVSANLLAGFKEG----EEFDRHCGMSGLGD 127
+ L +R PK + +C +PC + + + K E ++ HC S
Sbjct: 66 DIVLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRF 125
Query: 128 RCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDG 187
CLV PP YKIPLRWP RD +W AN+ T L+ + M++ ++I F
Sbjct: 126 NCLVPPPVGYKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGT 182
Query: 188 LVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVY 247
+G Y +A+M+ D +++VLDVGCG SFGA+L+S ++A+ +A
Sbjct: 183 HFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPN 242
Query: 248 EATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRL 307
+ +Q+Q ALERG+P+ +G +++LPYPS SF++ HC++C I W +++GI L+E DRL
Sbjct: 243 DVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRL 302
Query: 308 LKPGGYFVLTXXXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAH 367
L+PGGYFV + M + +++CW ++A++D++ IW K +
Sbjct: 303 LRPGGYFVYSSPEAYAHDPENRKIGNA----MHDLFKRMCWKVVAKRDQSVIWGKPISNS 358
Query: 368 CYTSR 372
CY R
Sbjct: 359 CYLKR 363
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 118/356 (33%), Positives = 184/356 (51%)
Query: 29 IVALIAVLGSSTSNTLDFVTSS----SKPDIYSSYRRLKEQAA----VDYLELRTLSLGT 80
+VAL+ ++GS + ++ F +S S+P +S Q+ + +EL
Sbjct: 18 MVALVLMVGSFYAGSI-FGNNSPIYISQPSSSNSSSSSPSQSGPSNFANKIELTYRRTSV 76
Query: 81 TRPKE-LDLCGKERENFVPCYNVS--ANLLAGFK--EGEEFDRHCGMSGLGDR--CLVRP 133
+ P+ +++C + ++PC+NV+ LL EE +RHC L R CLV P
Sbjct: 77 SIPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHC--PPLEQRLFCLVPP 134
Query: 134 PKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFD-G 192
PKDYKIP+RWP RD +W +NV T + G + E+ Q+ + G F G
Sbjct: 135 PKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQN----WVHEQGQLWWFPGGGTHFKHG 190
Query: 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS 252
+Y +++ M T + L AGV+ VLDVGCG SF A+L+ L + + A + +
Sbjct: 191 APEYIQRLGNMTTNET-GDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHEN 249
Query: 253 QVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGG 312
Q+Q ALERG+ AMI ++Q+PYP+ SFDMVHC++C + W + +G+ + E +RLL+P G
Sbjct: 250 QIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNG 309
Query: 313 YFVLTXXXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAHC 368
YFV + + T +CW LI+++ +T IW K D C
Sbjct: 310 YFVYSAPPAYRKDKDFPVIWDK----LVNLTSAMCWKLISRKVQTAIWVKEDDEAC 361
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 7.4e-44, P = 7.4e-44
Identities = 101/298 (33%), Positives = 153/298 (51%)
Query: 77 SLGTTRPKELDLCGKERENFVPCY-NVSA-NLLAGFKEGEEFDRHCGMSGLGDRCLVRPP 134
S R K+ +C + ++PC N L + GE F+RHC G G CLV PP
Sbjct: 168 SKARVRIKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPP 227
Query: 135 KDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVK 194
K Y+ P+ WP RD +W +NV T+ L + + ++N+ F G
Sbjct: 228 KGYRQPIPWPKSRDEVWFSNVPHTR---LVEDKGGQNWISRDKNKFKFPGGGTQFIHGAD 284
Query: 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV 254
Y Q+++M+ +D F + ++ +DVGCG SFGA+L+S +M + VA + +Q+
Sbjct: 285 QYLDQMSKMV---SDITFGKH-IRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQI 340
Query: 255 QLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYF 314
Q ALERG+PAM F +R+L YPS +FD++HC++C I W + +GI L+E +R+L+ GGYF
Sbjct: 341 QFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYF 400
Query: 315 VLTXXXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
M T +CW L+ ++ IWQK + CY SR
Sbjct: 401 AWAAQPVYKHEPALEEQWTE----MLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSR 454
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 109/368 (29%), Positives = 181/368 (49%)
Query: 14 GRGPPLSWLLLCFLSIVALIAVL--GSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYL 71
G+ P+ +LLC S+V + L GSS +++ + + ++ Y+
Sbjct: 8 GKKKPVI-VLLCVASVVLVFVYLFFGSSNHKAIEYGRKLGLGGDDDDSTKKDDTSSSFYV 66
Query: 72 ELRTLSLGTTRPKELDLCGKERENFVPCYN----VSANLLAGFKEGEEFDRHCGMSGLGD 127
E + G T P+ +C +PC + L E ++RHC
Sbjct: 67 E-DVVGNGFT-PRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRF 124
Query: 128 RCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDG 187
CL+ PP YKIP++WP RD +W N+ T L+ + M+++ +I F G
Sbjct: 125 NCLIPPPPGYKIPIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPG-GG 180
Query: 188 LVFD-GVKDYSRQIAEMIGLGTDSEFLQAG--VQSVLDVGCGFGSFGAHLVSLKLMAVCV 244
F G Y +A M+ + L G +++ LDVGCG SFG +L++ ++M + +
Sbjct: 181 THFHYGADKYIASMANMLNF--PNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSL 238
Query: 245 AVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEA 304
A + +Q+Q ALERG+PA +G +++LPYPS SF++ HC++C I W +++GI L+E
Sbjct: 239 APNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLEL 298
Query: 305 DRLLKPGGYFVLTXXXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTV 364
DR+L+PGGYF + M ++CW++ A++++T IWQK +
Sbjct: 299 DRVLRPGGYFAYSSPEAYAQDEEDLRIWRE----MSALVGRMCWTIAAKRNQTVIWQKPL 354
Query: 365 DAHCYTSR 372
CY R
Sbjct: 355 TNDCYLGR 362
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 94/294 (31%), Positives = 150/294 (51%)
Query: 84 KELDLCGKERENFVPCYN----VSANLLAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYKI 139
K +C +PC + L E ++RHC CL+ PP YK+
Sbjct: 82 KSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKV 141
Query: 140 PLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFD-GVKDYSR 198
P++WP RD +W AN+ T L+ + M+ + +I+F G F G Y
Sbjct: 142 PIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPG-GGTHFHYGADKYIA 197
Query: 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258
IA M+ D + +++VLDVGCG SFGA+L++ +M + +A + +Q+Q AL
Sbjct: 198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257
Query: 259 ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTX 318
ERG+PA +G +++LPYPS SF+ HC++C I W +++G+ L+E DR+L+PGGYF +
Sbjct: 258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSS 317
Query: 319 XXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
M E++CW + ++++T +WQK + CY R
Sbjct: 318 PEAYAQDEENLKIWKE----MSALVERMCWRIAVKRNQTVVWQKPLSNDCYLER 367
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 101/291 (34%), Positives = 152/291 (52%)
Query: 84 KELDLCGKERENFVPCY-NVSA-NLLAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYKIPL 141
++ ++C + ++PC NV A L GE F+R+C G+G C V P+ Y+ P+
Sbjct: 147 RKFEICSENMTEYIPCLDNVEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRSPI 206
Query: 142 RWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDGVKDYSRQIA 201
WP RD +W NV TK L + + E ++ F G Y QI+
Sbjct: 207 PWPRSRDEVWFNNVPHTK---LVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQIS 263
Query: 202 EMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG 261
+MI D F + VLD+GCG SFGA+L+S ++ + +A + +Q+Q ALERG
Sbjct: 264 QMI---PDISFGNH-TRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERG 319
Query: 262 LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTXXXX 321
+PAM+ F +R+L YPS +FD+VHC++C I W + +GI L+E +R+L+ GGYFV
Sbjct: 320 VPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPV 379
Query: 322 XXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
M T ++CW L+ ++ IWQK V+ CY SR
Sbjct: 380 YKHEKALEEQWEE----MLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSR 426
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 118/350 (33%), Positives = 179/350 (51%)
Query: 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAA--VDYLELRTLSLGTTRPKE- 85
+VAL+ ++GS + +L F T+ +P IY S+ ++ + +EL L P+
Sbjct: 16 MVALVLMVGSFYTGSL-FGTN--QP-IYVSHPSSHSASSKFANKIELTYRRLPLVIPESG 71
Query: 86 LDLCGKERENFVPCYNVSA--NLLAGFK--EGEEFDRHCGMSGLGDR--CLVRPPKDYKI 139
+++C E ++PC+NV+ LL E+ +RHC L R CLV PP DYKI
Sbjct: 72 MNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHC--PPLEHRLFCLVPPPNDYKI 129
Query: 140 PLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFD-GVKDYSR 198
P+RWP RD +W +NV T + G + E+ Q + G F G +Y +
Sbjct: 130 PIRWPTSRDYVWRSNVNHTHLAQVKGGQN----WVHEQGQFWWFPGGGTHFKHGAAEYIQ 185
Query: 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258
++ M+ T + AGV VLDVGCG SF A+L+ L + + A + +Q+Q AL
Sbjct: 186 RLGNMMTNET-GDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFAL 244
Query: 259 ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTX 318
ERG+ AMI ++QLPYP+ SF+MVHC++C + W +GI L E RLL+P G+FV +
Sbjct: 245 ERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSS 304
Query: 319 XXXXXXXXXXXXXXXXXXXVMEEFTEKICWSLIAQQDETFIWQKTVDAHC 368
+ T +CW LI+++ +T IW K C
Sbjct: 305 PPAYRKDKEYPMIWDK----LVNLTSAMCWKLISRKVQTAIWIKEEKEVC 350
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 372 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 3e-74 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-08 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 6e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 5e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 0.003 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.004 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 3e-74
Identities = 112/284 (39%), Positives = 157/284 (55%), Gaps = 20/284 (7%)
Query: 95 NFVPCYNVSANL--LAGFKEGEEFDRHCGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWS 152
+++PC + + L + E +RHC S RCLV PP YK P+ WP RD +W
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 153 ANVKITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFD-GVKDYSRQIAEMIGLGTDSE 211
ANV TK L+ + + +E ++ F G F G Y +A+MI
Sbjct: 61 ANVPHTK---LAEEKGGQNWVKVEGDKFRF-PGGGTQFPHGADAYIDFLAQMIPDIAWG- 115
Query: 212 FLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVA---VYEATGSQVQLALERGLPAMIGN 268
V++ LDVGCG SFGA+L+S ++ + A V+EA QVQ ALERG+PAM+G
Sbjct: 116 ---GRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEA---QVQFALERGVPAMLGV 169
Query: 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSS 328
+R+LPYPS SFDM HC++C I W +GI L+E DR+L+PGGYFVL+ P P +
Sbjct: 170 LGTRRLPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGP---PVYARD 226
Query: 329 SRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372
+ K ME + +CW L+A++ + IWQK V+ CY R
Sbjct: 227 EEDLQEEWKAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKR 270
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-08
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPYPSL 279
LDVGCG G L V V + + + LA +R ++G+ LP+P
Sbjct: 1 LDVGCGTGLLAEALARRGGARV-TGV-DLSPEMLALARKRAPRKFVVGDA--EDLPFPDE 56
Query: 280 SFDMVHCAQC-GIIWDKKEGIFLIEADRLLKPGGYFVL 316
SFD+V + + D + L E R+LKPGG V+
Sbjct: 57 SFDVVVSSLVLHHLPDPER--ALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 214 QAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ------LALERGLPAMIG 267
+ + ++DVGCG G +L K A + T S VQ LA +GL
Sbjct: 116 EKRPKRIVDVGCGIGGSSRYLAR-KYGANVKGI---TLSPVQAARANALAAAQGL----S 167
Query: 268 NFISRQ------LPYPSLSFDMVHCAQCGI-IWDKKEGIFLIEADRLLKPGGYFVLTS-- 318
+ +S Q P+ FD+V + G + DK++ F+ E R+ PGG ++ +
Sbjct: 168 DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRK--FVQELARVAAPGGRIIIVTWC 225
Query: 319 -PESKPRGSSSSRKNKSLLKVMEEFTEKIC 347
+ +P +S + LL KIC
Sbjct: 226 HRDLEPGETSLKPDEQKLLD-------KIC 248
|
Length = 340 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-06
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF------ISRQ 273
VLD+GCG G+ L S V + + ++LA + + N
Sbjct: 2 VLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
P SFD++ + FL EA RLLKPGG VLT
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGNFISRQ 273
+LD+GCG G L +V V + + ++LA ER G ++ + R
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSV-TGV-DISKEALELAKERLRDKGPKVRFVVADA--RD 56
Query: 274 LPYPSLSFDMVHCAQCGI--IWDKKEGIFLIEADRLLKPGG 312
LP+ SFD+V CA + + K+ L EA RLL+PGG
Sbjct: 57 LPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (93), Expect = 5e-04
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Query: 168 MTKRLMLLEENQIAFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGF 227
+ L + + + D + ++ +++ + L G VLD+GCG
Sbjct: 1 DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLP-GGLGVLDIGCGT 59
Query: 228 GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPA-------MIGNFISRQLPYP-SL 279
G A L L V + + + LA R A ++ + + LP+ S
Sbjct: 60 G-RLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSA 118
Query: 280 SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
SFD+V + + L E R+LKPGG VL+
Sbjct: 119 SFDLVISLLVLHLLPPAK--ALRELLRVLKPGGRLVLS 154
|
Length = 257 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ----- 273
VLD+GCG GS L L A V + + ++LA E A+ Q
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGV-DLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
FD V G + L LLKPGG VL +
Sbjct: 63 ALDLLEGFDAVFIGGGGGDLLE----LLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 219 SVLDVGCGFGSFG---AHLV--SLKLMAV---CVAVYEATGSQVQLALERGLPAM---IG 267
VLD+GCG G A + +++ + A+ +A + A + G + G
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAK----ENAKKLGYENVEFIQG 61
Query: 268 NFIS-RQLPYPSLSFDMVHCAQ-CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ QL SFD+V + + D + + I R+LKPGG +++ P
Sbjct: 62 DIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEII--RVLKPGGVLIVSDP 113
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.004
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
VLD+GCG G L+L+ L F +
Sbjct: 24 GRVLDIGCGTGIL------LRLLRERGFDVTGVDPSPAAVLIF------SLFDAPDPAVL 71
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ +D++ + + L + LLKPGG ++++P
Sbjct: 72 AGKYDLITAFEV-LEHLPDPPALLQQLRELLKPGGVLLISTP 112
|
This family appears to be a methyltransferase domain. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.8 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.76 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.73 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.65 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.65 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.63 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.63 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.61 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.6 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.59 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.59 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.55 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.55 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.53 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.53 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.53 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.53 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.53 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.51 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.5 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.49 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.48 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.47 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.47 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.47 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.47 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.46 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.45 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.44 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.44 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.43 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.43 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.43 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.41 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.4 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.4 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.39 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.39 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.36 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.35 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.34 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.34 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.32 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.32 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.32 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.32 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.31 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.3 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.3 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.3 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.29 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.29 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.28 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.25 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.25 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.24 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.24 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.24 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.23 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.23 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.23 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.23 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.22 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.22 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.22 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.21 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.21 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.2 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.2 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.2 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.18 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.18 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.17 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.17 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.15 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.15 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.15 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.15 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.14 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.14 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.1 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.09 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.08 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.08 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.08 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.06 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.06 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.06 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.01 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.01 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.98 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.97 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.96 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.96 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.95 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.94 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.94 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.93 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.91 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.89 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.89 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.88 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.87 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.87 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.86 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.86 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.86 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.85 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.85 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.84 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.83 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.82 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.81 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.8 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.79 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.78 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.78 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.74 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.73 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.72 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.72 | |
| PLN02366 | 308 | spermidine synthase | 98.69 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.69 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.69 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.67 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.66 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.64 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.63 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.62 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.61 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.61 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.6 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.58 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.53 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.51 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.49 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.49 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.49 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.47 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.44 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.44 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.43 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.41 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.4 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.38 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.37 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.37 | |
| cd04789 | 102 | HTH_Cfa Helix-Turn-Helix DNA binding domain of the | 98.35 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.35 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.33 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.28 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.28 | |
| cd04775 | 102 | HTH_Cfa-like Helix-Turn-Helix DNA binding domain o | 98.27 | |
| PLN02476 | 278 | O-methyltransferase | 98.26 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.25 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.23 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.22 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.22 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.21 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.21 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.2 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.2 | |
| cd04790 | 172 | HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma | 98.18 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.14 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.14 | |
| cd01282 | 112 | HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding dom | 98.13 | |
| cd04787 | 133 | HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain | 98.1 | |
| PLN02823 | 336 | spermine synthase | 98.06 | |
| cd01110 | 139 | HTH_SoxR Helix-Turn-Helix DNA binding domain of th | 98.03 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.03 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.03 | |
| cd04768 | 96 | HTH_BmrR-like Helix-Turn-Helix DNA binding domain | 98.02 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.02 | |
| TIGR01950 | 142 | SoxR redox-sensitive transcriptional activator Sox | 97.99 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.99 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.98 | |
| cd04784 | 127 | HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain | 97.98 | |
| cd01108 | 127 | HTH_CueR Helix-Turn-Helix DNA binding domain of Cu | 97.96 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.96 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.95 | |
| TIGR02044 | 127 | CueR Cu(I)-responsive transcriptional regulator. T | 97.95 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.94 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.93 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.93 | |
| cd01111 | 107 | HTH_MerD Helix-Turn-Helix DNA binding domain of th | 97.92 | |
| cd04788 | 96 | HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain | 97.92 | |
| cd04782 | 97 | HTH_BltR Helix-Turn-Helix DNA binding domain of th | 97.9 | |
| cd04781 | 120 | HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding dom | 97.9 | |
| PRK10227 | 135 | DNA-binding transcriptional regulator CueR; Provis | 97.89 | |
| COG0789 | 124 | SoxR Predicted transcriptional regulators [Transcr | 97.89 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.87 | |
| cd04770 | 123 | HTH_HMRTR Helix-Turn-Helix DNA binding domain of H | 97.87 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.87 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.85 | |
| PRK15002 | 154 | redox-sensitivie transcriptional activator SoxR; P | 97.84 | |
| TIGR02047 | 127 | CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional | 97.84 | |
| PRK13752 | 144 | putative transcriptional regulator MerR; Provision | 97.83 | |
| cd04783 | 126 | HTH_MerR1 Helix-Turn-Helix DNA binding domain of t | 97.83 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.83 | |
| cd04774 | 96 | HTH_YfmP Helix-Turn-Helix DNA binding domain of th | 97.82 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.82 | |
| cd04785 | 126 | HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding do | 97.82 | |
| TIGR02054 | 120 | MerD mercuric resistence transcriptional repressor | 97.82 | |
| cd01109 | 113 | HTH_YyaN Helix-Turn-Helix DNA binding domain of th | 97.81 | |
| cd04786 | 131 | HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding dom | 97.81 | |
| PRK13749 | 121 | transcriptional regulator MerD; Provisional | 97.78 | |
| cd04776 | 118 | HTH_GnyR Helix-Turn-Helix DNA binding domain of th | 97.78 | |
| cd04779 | 134 | HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding dom | 97.78 | |
| TIGR02043 | 131 | ZntR Zn(II)-responsive transcriptional regulator. | 97.77 | |
| cd04777 | 107 | HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding dom | 97.76 | |
| cd04772 | 99 | HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding d | 97.76 | |
| PRK09514 | 140 | zntR zinc-responsive transcriptional regulator; Pr | 97.74 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.73 | |
| TIGR02051 | 124 | MerR Hg(II)-responsive transcriptional regulator. | 97.73 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.73 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.72 | |
| cd04766 | 91 | HTH_HspR Helix-Turn-Helix DNA binding domain of th | 97.72 | |
| cd04769 | 116 | HTH_MerR2 Helix-Turn-Helix DNA binding domain of M | 97.72 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.71 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.71 | |
| cd04763 | 68 | HTH_MlrA-like Helix-Turn-Helix DNA binding domain | 97.69 | |
| cd01107 | 108 | HTH_BmrR Helix-Turn-Helix DNA binding domain of th | 97.68 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.65 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.65 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.63 | |
| PF13411 | 69 | MerR_1: MerR HTH family regulatory protein; PDB: 2 | 97.63 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.63 | |
| cd04773 | 108 | HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding | 97.63 | |
| cd01105 | 88 | HTH_GlnR-like Helix-Turn-Helix DNA binding domain | 97.6 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.6 | |
| cd04780 | 95 | HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding dom | 97.59 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.57 | |
| cd01279 | 98 | HTH_HspR-like Helix-Turn-Helix DNA binding domain | 97.56 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.55 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.54 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.53 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.52 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.48 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.47 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.4 | |
| cd04764 | 67 | HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding dom | 97.4 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.4 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.4 | |
| cd04767 | 120 | HTH_HspR-like_MBC Helix-Turn-Helix DNA binding dom | 97.38 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.33 | |
| cd04765 | 99 | HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding dom | 97.33 | |
| cd01106 | 103 | HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain | 97.33 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.32 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.31 | |
| cd01104 | 68 | HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain | 97.3 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.29 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.29 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.21 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.18 | |
| PRK15043 | 243 | transcriptional regulator MirA; Provisional | 97.18 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.18 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.15 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.14 | |
| cd00592 | 100 | HTH_MerR-like Helix-Turn-Helix DNA binding domain | 97.14 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.1 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.07 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.06 | |
| cd04761 | 49 | HTH_MerR-SF Helix-Turn-Helix DNA binding domain of | 97.06 | |
| smart00422 | 70 | HTH_MERR helix_turn_helix, mercury resistance. | 97.06 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.05 | |
| PF00376 | 38 | MerR: MerR family regulatory protein; InterPro: IP | 96.98 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.98 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.95 | |
| PRK13182 | 175 | racA polar chromosome segregation protein; Reviewe | 96.93 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.9 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.83 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.83 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.81 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.75 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.73 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.68 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.55 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.52 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.46 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.46 | |
| cd04778 | 219 | HTH_MerR-like_sg2 Helix-Turn-Helix DNA binding dom | 96.44 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.29 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.21 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.18 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.81 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.8 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.71 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.68 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.67 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.65 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.6 | |
| cd04762 | 49 | HTH_MerR-trunc Helix-Turn-Helix DNA binding domain | 95.56 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.51 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.43 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.14 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.0 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.59 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.59 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.85 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.77 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.31 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.2 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.1 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.05 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 92.82 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.82 | |
| PHA01634 | 156 | hypothetical protein | 92.55 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.52 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.41 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.38 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.31 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 92.18 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.17 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 92.06 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 91.83 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 91.77 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.36 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 91.34 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.18 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 90.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 89.99 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 89.83 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 89.55 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.15 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 88.76 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 88.71 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 88.54 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 88.42 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 87.48 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 87.27 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 86.99 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 86.85 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.66 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 86.21 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 85.52 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 85.06 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 84.93 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 84.12 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 84.0 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 83.62 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 83.54 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 83.48 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.38 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 83.16 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 82.73 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 82.73 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 81.56 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 81.14 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 81.05 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=510.08 Aligned_cols=266 Identities=41% Similarity=0.778 Sum_probs=249.2
Q ss_pred CcccCcCchhhhhc--CccccchhhcCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccccCchhhhcccccccccc
Q 017377 95 NFVPCYNVSANLLA--GFKEGEEFDRHCGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRL 172 (372)
Q Consensus 95 ~~~pc~d~~~~~~~--~~~~~~~~~r~c~~~~~~~~cl~~~p~~~~~p~~wp~s~d~~W~~nv~~~~~~~l~~~~~~~~~ 172 (372)
|||||+|+++++++ ++++++|+|||||+.+++.+||+|+|+||+.|++||+|||++|++|+||++ |...+..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999998 899999999999998999999999999999999999999999999999998 7778899999
Q ss_pred cccccceeeecCCCcccccchhHHHHHHHHHHcc--CCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCC
Q 017377 173 MLLEENQIAFHSEDGLVFDGVKDYSRQIAEMIGL--GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEAT 250 (372)
Q Consensus 173 ~~~~~~~~~F~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s 250 (372)
+..+++.+.|+++++.+.+++..|+++|.++++. ..+ .++++||||||+|+|+++|+++++.+++++..|.+
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g------~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~ 151 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGG------GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEH 151 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCC------ceEEEEeccceeehhHHHHhhCCceEEEcccccCC
Confidence 9999999999996665558999999999999987 333 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc
Q 017377 251 GSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR 330 (372)
Q Consensus 251 ~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~ 330 (372)
++++|+|.+||+++++..+..++||||+++||+|||+.|++.|.++.+.+|.|++|+|||||+|+++.|+.+.+. ..
T Consensus 152 ~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~---~~ 228 (506)
T PF03141_consen 152 EAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT---DE 228 (506)
T ss_pred chhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccc---hH
Confidence 999999999999999998889999999999999999999999998888899999999999999999999888422 23
Q ss_pred hhhHHHHHHHHHHHhcCeeEEeeecceEEEEecCCCcccccC
Q 017377 331 KNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372 (372)
Q Consensus 331 e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~~~~cy~~~ 372 (372)
+..++|+.+++++++|||++++++++++|||||.+++||.+|
T Consensus 229 ~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r 270 (506)
T PF03141_consen 229 DLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKR 270 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhc
Confidence 778999999999999999999999999999999999999886
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=162.70 Aligned_cols=120 Identities=24% Similarity=0.272 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-----eEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-----~~~~~ 268 (372)
..|-+.+.+.+...++ .+|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.+..
T Consensus 37 ~~Wr~~~i~~~~~~~g--------~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~ 107 (238)
T COG2226 37 RLWRRALISLLGIKPG--------DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107 (238)
T ss_pred HHHHHHHHHhhCCCCC--------CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence 3445555555554444 8999999999999999998854 67899999999999999988443 66788
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+|++.|||+|++||+|.+++++.++ ++...+|+|++|||||||.+++.+.....
T Consensus 108 ~dAe~LPf~D~sFD~vt~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 108 GDAENLPFPDNSFDAVTISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred echhhCCCCCCccCEEEeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 8999999999999999999997777 68888999999999999999988765543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=159.36 Aligned_cols=104 Identities=28% Similarity=0.341 Sum_probs=79.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||||.++..++++......|+++|+|+.|++.|+++ +. ++.+...|++.+|+++++||+|+|++++.+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn 128 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN 128 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh
Confidence 7999999999999999988744456899999999999999876 22 577888899999999999999999998777
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+ ++...+|+|++|+|||||.+++.+....
T Consensus 129 ~-~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 129 F-PDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp --SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred h-CCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 6 6778899999999999999998876443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=130.68 Aligned_cols=93 Identities=30% Similarity=0.414 Sum_probs=79.3
Q ss_pred EEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC--eEEEEeeccCCCCCCCCccEEEeccccccccccHH
Q 017377 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP--AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEG 298 (372)
Q Consensus 221 LDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~ 298 (372)
||+|||+|.++..++++ ....++++|+++.+++.++++... ..+...+...+|+++++||+|++..+++|+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 346799999999999999987543 447778899999999999999999887777 8888
Q ss_pred HHHHHHHhcccCCeEEEE
Q 017377 299 IFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 299 ~~L~el~rvLkPGG~lvi 316 (372)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=150.47 Aligned_cols=105 Identities=20% Similarity=0.136 Sum_probs=88.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--------CCeEEEEeeccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--------LPAMIGNFISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--------l~~~~~~~d~~~lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++++......++|+|+|+.|++.|+++. .++.+...++..+|+++++||+|+++++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~ 154 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG 154 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc
Confidence 78999999999999988876322357999999999999997652 1456777888999999999999999988
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++++ +++..++.|+.|+|||||++++.+.....
T Consensus 155 l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 155 LRNV-VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cccC-CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 7666 67888999999999999999999876543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-16 Score=142.27 Aligned_cols=102 Identities=26% Similarity=0.377 Sum_probs=89.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||-|.++..|+..| ..|+|+|.++.+|+.|+.+ ++.+.+....++++....++||+|+|..+++|.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 789999999999999999987 6699999999999988854 555556666667776666899999999999998
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+++..+++.+.+++||||.+++++++...
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 88888999999999999999999998665
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=140.84 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=96.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeec
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFIS 271 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~ 271 (372)
...+.+.+.+...++ .+|||||||+|..+..+++.. ...++++|+|+.+++.|+++.. .+.+...|.
T Consensus 39 ~~~~~~l~~l~l~~~--------~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~ 108 (263)
T PTZ00098 39 EATTKILSDIELNEN--------SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI 108 (263)
T ss_pred HHHHHHHHhCCCCCC--------CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc
Confidence 345566666666665 789999999999999887652 3579999999999999998632 356667777
Q ss_pred cCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
...|+++++||+|++..+++|+. .+...+|+++.++|||||+++++++...
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 78899999999999988888875 3677899999999999999999987543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=141.10 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=88.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++.....+...|...+|+++++||+|+++.+ ++|..+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d 118 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCGN 118 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCC
Confidence 3689999999999999988764 468999999999999998865555666788889999999999999876 567788
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+..+|.++.++|+|||.++++.+....
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 889999999999999999999876543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-15 Score=143.93 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..|++.. ...++|+|+|+.|++.|+++ ++ ++.+...|+..+|+++++||+|++..++
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 3789999999999999999863 35799999999999887764 44 3667778888999999999999999888
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+|+ .+...++.++.|+|||||.+++++...
T Consensus 197 ~h~-~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHM-PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hcc-CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 887 667789999999999999999987643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=136.46 Aligned_cols=133 Identities=23% Similarity=0.211 Sum_probs=106.3
Q ss_pred ccccchhHHHHHHHHHHccCCCchhh--------hcCCCeEEEeCCCCcHHHHHHHhcCCc-----eeEEEEeeCCHHHH
Q 017377 188 LVFDGVKDYSRQIAEMIGLGTDSEFL--------QAGVQSVLDVGCGFGSFGAHLVSLKLM-----AVCVAVYEATGSQV 254 (372)
Q Consensus 188 ~~~~~~~~~~~~l~~~l~~~~~~~~~--------~~~~~~VLDIGCG~G~~~~~L~~~~~~-----~~~v~gvD~s~~~v 254 (372)
+.|+....+++.+.+.+.++..+.|. .....++||++||||..+..++++-.. ...|+..|+++.|+
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 45666666677777777766554443 223479999999999999999886322 26789999999999
Q ss_pred HHHHHcC----C----CeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 255 QLALERG----L----PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 255 ~~A~~rg----l----~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+++|. + .+.+...|+++|||++.+||+.++++++..+ .++.++|+|++|||||||.|.+-..+.
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 144 AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 8877663 3 2567888999999999999999999998888 777889999999999999999877643
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=139.21 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=87.9
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY 276 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~ 276 (372)
...+.+.+....+ .+|||||||+|.++..+++.. ....++|+|+|+.|++.|+++++.+. ..|+..++
T Consensus 18 ~~~ll~~l~~~~~--------~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~~~~--~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVGAERA--------RRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGVDAR--TGDVRDWK- 85 (255)
T ss_pred HHHHHHhCCCCCC--------CEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCCcEE--EcChhhCC-
Confidence 3445555554443 789999999999999998874 23579999999999999998765544 44566664
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++||+|+|+.+++|. +++..++.++.++|||||++++..+.
T Consensus 86 ~~~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCCceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 56899999999875554 77788999999999999999998654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=141.89 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=101.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----C--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----L--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..|+..+ ..|+|+|+++.+++.|+++. . .+.+...+++++++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3689999999999999998764 46899999999999998651 1 3556677778888888999999999998
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCC------------CC-CCcchh----hHHHHHHHHHHHhcCeeEEee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPR------------GS-SSSRKN----KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~------------~~-~~~~e~----~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+|+ .++..++.++.++|||||.+++++++.... .. .+...+ .-.-+++..+.+..++++...
T Consensus 209 eHv-~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHV-ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred Hhc-CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 887 677789999999999999999998765420 00 011000 112355677778888887755
Q ss_pred e
Q 017377 354 Q 354 (372)
Q Consensus 354 ~ 354 (372)
.
T Consensus 288 ~ 288 (322)
T PLN02396 288 A 288 (322)
T ss_pred e
Confidence 3
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=127.55 Aligned_cols=125 Identities=27% Similarity=0.466 Sum_probs=93.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.+. .++++|+++.+++. ........+....+.++++||+|+|+.+++|. +++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~-~d~ 94 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL-PDP 94 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS-SHH
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhc-ccH
Confidence 7999999999999999988764 69999999999988 33344444444556788999999999987777 578
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC---------CCCCC--cchhhHHHHHHHHHHHhcCeeEE
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP---------RGSSS--SRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~---------~~~~~--~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
..+|.++.++|||||+++++++.... ....+ .....-.-+.+..+.++.+++++
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 88999999999999999999997642 00000 00111123456667777888766
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=129.08 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=95.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++.++++++ ..|+++|+|+.+++.++++ ++++.....+....+++ ++||+|+++.+++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 689999999999999999875 4689999999999876543 55555555555555554 679999999877666
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeCCCCCC-CCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSPESKPR-GSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p~~~~~-~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
. ++...++.++.++|+|||++++........ ...++.......+++..+.. .|+.+.-......|.|..
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~~ 178 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHATD 178 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccccccccc
Confidence 4 344579999999999999966654322111 11111122233344444444 388777666666676654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.8e-15 Score=135.20 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=76.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.. ...++|+|+|+.|++.|+++. .....++..+|+++++||+|+++++++|+ +++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~-~d~ 126 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS-DNI 126 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc-CCH
Confidence 689999999999999998873 257999999999999998763 23456788899999999999999987655 788
Q ss_pred HHHHHHHHhcccCCe
Q 017377 298 GIFLIEADRLLKPGG 312 (372)
Q Consensus 298 ~~~L~el~rvLkPGG 312 (372)
..+++|+.|+|||.+
T Consensus 127 ~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 127 EKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHhcCce
Confidence 889999999999953
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=131.88 Aligned_cols=119 Identities=21% Similarity=0.231 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
..+.+.+.+.+...++ .+|||+|||+|.++..+++.......++++|+++.+++.|+++ ++ .+.+..
T Consensus 31 ~~~~~~~l~~l~~~~~--------~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~ 102 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAG--------TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVH 102 (231)
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE
Confidence 3344556666655444 7999999999999999987633345799999999999988765 23 355666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.|...+++++++||+|+++.++.+. ++...++.++.++|+|||++++.++..
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNV-PDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred echhcCCCCCCCccEEEEecccccC-CCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7777888888999999998775554 677789999999999999999987654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=128.16 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=93.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..|++++ ..|+++|+|+.+++.++++ ++. +.+...|...++++ ++||+|+|+.++++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 689999999999999999875 4689999999999887654 443 44555566666664 67999999988665
Q ss_pred ccc-cHHHHHHHHHhcccCCeEEEEEe-CCCCCC--CCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 293 WDK-KEGIFLIEADRLLKPGGYFVLTS-PESKPR--GSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 293 ~~~-~~~~~L~el~rvLkPGG~lvis~-p~~~~~--~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
+.+ +...++.++.++|+|||++++.. ...... ...++.. -.-+++..+.+ +|+.+.......+|.++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~--~~~~el~~~~~--~~~~~~~~~~~~~~~~~~ 179 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFA--FKEGELRRYYE--GWEMVKYNEDVGELHRTD 179 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCc--cCHHHHHHHhC--CCeEEEeeCCHHhhcccc
Confidence 543 45679999999999999966543 221110 0111111 11123344434 688776655556666543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-14 Score=131.03 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=89.2
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY 276 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~ 276 (372)
.+.+.+.+....+ .+|||||||+|.++..+++.. ....++++|+|+.|++.|+++...+.+...|...++
T Consensus 20 ~~~ll~~~~~~~~--------~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~- 89 (258)
T PRK01683 20 ARDLLARVPLENP--------RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHhhCCCcCC--------CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-
Confidence 4445555544433 789999999999999998874 346799999999999999988655666666666554
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++||+|+++.++ ||..+...++.++.++|||||.+++..+.
T Consensus 90 ~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 90 PPQALDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCCccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 45799999999875 45577788999999999999999998654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=123.00 Aligned_cols=102 Identities=24% Similarity=0.339 Sum_probs=84.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
..+|||+|||+|.++..+++.......++|+|+|+.|++.|+++ +++ +.+...|+.+++ ++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 37899999999999999995422346699999999999998874 554 778888888877 66 89999999977
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++ .++..+++++.++|++||.++++++.
T Consensus 83 l~~~-~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHF-PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGT-SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhc-cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6554 77778999999999999999999886
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=127.60 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-CceeEEEEeeCCHHHHHHHHHc------CCCeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-~~~~~v~gvD~s~~~v~~A~~r------gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..++++. .....++|+|+|+.|++.|+++ ..++.+...|...++++ .+|+|+++.++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecch
Confidence 689999999999999998762 2346799999999999998875 22456777777777765 48999999887
Q ss_pred ccccc-cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDK-KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~-~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+++.+ +...++.++.++|+|||.++++++..
T Consensus 133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 66643 34679999999999999999998744
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-14 Score=128.93 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=87.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+.+|||||||+|.++..+++.+. ...++++|+++.+++.++++.. ++.+...|....++++++||+|+++.+++ +..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~-~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ-WCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh-hcc
Confidence 36899999999999999998864 3558999999999999887643 34566677888888899999999998754 447
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++..++.++.++|+|||.++++++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 7888999999999999999999876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=126.50 Aligned_cols=117 Identities=27% Similarity=0.351 Sum_probs=95.0
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEee
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFI 270 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d 270 (372)
.+.+.+.+.+...++ .+|||+|||+|.++..+++.......++++|+++.+++.++++ +..+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 6 RYRARTFELLAVQPG--------DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred HHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc
Confidence 345556666666554 7899999999999999988642345799999999999999876 2345566667
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...+++++++||+|++..++.|+ .++..+++++.++|+|||++++.++.
T Consensus 78 ~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 78 ADGLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 77788888999999999887776 67778999999999999999998865
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=131.97 Aligned_cols=134 Identities=23% Similarity=0.149 Sum_probs=98.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+...|...+++++++||+|+++.+++++ +
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~-~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW-P 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-C
Confidence 689999999999998888753 2357899999999999998763 23455667788889999999999999887776 6
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchh------hHHHHHHHHHHHhcCeeEEeeec
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKN------KSLLKVMEEFTEKICWSLIAQQD 355 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~------~~~w~~i~~l~~~lcw~~~~~~~ 355 (372)
++..+|+++.++|+|||.+++..+....... .... ....+++.++.++.+|+.+..+.
T Consensus 193 d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~--~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 193 DPQRGIKEAYRVLKIGGKACLIGPVHPTFWL--SRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEecCcchhH--HHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 6778999999999999999987653321000 0000 01124556677888888765543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-14 Score=132.84 Aligned_cols=98 Identities=21% Similarity=0.329 Sum_probs=82.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc--eeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM--AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~--~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.... ...++|+|+|+.+++.|.++..++.+...+...+|+++++||+|++... +
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-----~ 161 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-----P 161 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----C
Confidence 67999999999999999876322 2368999999999999998876777777888899999999999998643 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
..+.++.|+|||||++++..|+..+
T Consensus 162 ---~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 162 ---CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred ---CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 1468999999999999999887654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=131.71 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=83.6
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC-CCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP-YPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp-~~~~sFDlV~~~~~ 289 (372)
+.+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ ++ .+.+...++..++ +++++||+|+|..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3689999999999999999875 4689999999999988875 33 3456666666653 66789999999988
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
++++ .++..++.++.++|||||++++..++..
T Consensus 122 l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 122 LEWV-ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHhh-CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 6665 6777899999999999999998876543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=123.25 Aligned_cols=130 Identities=23% Similarity=0.275 Sum_probs=102.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||+|||.|.+..+|.+. ......|+|++++.+..+.++|+++..++++..--.|++++||.|+++.++.++ .++
T Consensus 15 srVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-~~P 91 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-RRP 91 (193)
T ss_pred CEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH-hHH
Confidence 68999999999999999885 345678999999999999999999999988654445999999999999998887 778
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC---------CCCCCcc------------hhhHHHHHHHHHHHhcCeeEEee
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP---------RGSSSSR------------KNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~---------~~~~~~~------------e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..+|.||.|+ |...+++.||..+ +.++|.. -+.-...+++++++.++.++.-+
T Consensus 92 ~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 92 DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 8899999666 7788999999866 2333322 12233455677777777776644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.5e-14 Score=113.44 Aligned_cols=100 Identities=26% Similarity=0.321 Sum_probs=77.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------CCeEEEEeec-cCCCCCCCCccEEEecc-c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------LPAMIGNFIS-RQLPYPSLSFDMVHCAQ-C 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------l~~~~~~~d~-~~lp~~~~sFDlV~~~~-~ 289 (372)
.+|||||||+|.++..++++. ....++++|+|+.+++.|+++. .++.+...|. ..... .+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 689999999999999999932 2356999999999999988763 3567777776 33333 35699999997 4
Q ss_pred ccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWD--KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~--~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..++. ++...++.++.+.|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 33332 4556799999999999999999863
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=140.84 Aligned_cols=103 Identities=25% Similarity=0.318 Sum_probs=87.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CC--CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
..+|||||||+|..+..+++.. ...++|+|+|+.+++.|+++ +. .+.+...|...+++++++||+|+|..+++|
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 3689999999999999888763 35799999999999999765 22 356777788888888899999999988877
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+ .++..++.++.|+|||||.++++++...
T Consensus 345 ~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 345 I-QDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred c-CCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 7 6777899999999999999999987543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=133.62 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=95.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH--Hc----CCCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL--ER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~--~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
++|||||||+|.++..++..+.. .|+|+|+|+.++..+. ++ ..++.+...++..+|+ +++||+|+|..+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 78999999999999999988643 4899999999886433 22 2346677778888888 78999999998877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCC---CCCcchh--------hHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG---SSSSRKN--------KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~---~~~~~e~--------~~~w~~i~~l~~~lcw~~~~~ 353 (372)
|. .++..+|++++++|+|||.+++++....... ..+.... ...-..+..+.++.+++.+..
T Consensus 201 H~-~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 201 HR-RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred cc-CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 76 6777899999999999999999764322211 0010000 011245667778888876644
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=126.86 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=81.0
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|..+..+++. ......++++|+|+.|++.|+++ +. .+.+...+...+|++ .+|+|+++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 68999999999999888763 12346799999999999999876 22 356666777777764 49999999887
Q ss_pred cccccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+++.++ ...++.++.++|+|||.|++++...
T Consensus 136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 776432 3579999999999999999998543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=128.11 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=78.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++.++++.+ ..|+++|+|+.+++.++++ ++++.....|....++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 589999999999999999876 4689999999999877643 6666666666655555 6789999999876665
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ++...+++++.++|+|||++++..+
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4 3445799999999999999777554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-14 Score=114.07 Aligned_cols=93 Identities=27% Similarity=0.350 Sum_probs=74.4
Q ss_pred EEEeCCCCcHHHHHHHhcC--CceeEEEEeeCCHHHHHHHHHcC----CCeEEEEeeccCCCCCCCCccEEEeccc-ccc
Q 017377 220 VLDVGCGFGSFGAHLVSLK--LMAVCVAVYEATGSQVQLALERG----LPAMIGNFISRQLPYPSLSFDMVHCAQC-GII 292 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~--~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~~d~~~lp~~~~sFDlV~~~~~-~~~ 292 (372)
|||+|||+|..+..+++.. .....++++|+|+.|++.++++. .++.+.+.|...+++.+++||+|+|+++ +.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999873 12267999999999999998774 7888999999999988999999999655 566
Q ss_pred ccc-cHHHHHHHHHhcccCCe
Q 017377 293 WDK-KEGIFLIEADRLLKPGG 312 (372)
Q Consensus 293 ~~~-~~~~~L~el~rvLkPGG 312 (372)
+.+ +...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 543 34579999999999998
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=119.28 Aligned_cols=100 Identities=19% Similarity=0.045 Sum_probs=80.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc-c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK-K 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~-~ 296 (372)
.+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++...+.+...++.. |+++++||+|+++.+++|+.+ +
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~ 122 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDN 122 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHH
Confidence 689999999999999998762 2357999999999999999865455555666666 889999999999999888853 3
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...++.++.|++ ++++++.+...
T Consensus 123 ~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 123 LPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHhhc--CcEEEEEEeeC
Confidence 457899999998 57888877533
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=130.29 Aligned_cols=132 Identities=17% Similarity=0.111 Sum_probs=94.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--c----CCCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--R----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
++|||||||+|.++..++..+. ..++|+|+|+.|+..+.. + ...+.+...+..++|.. .+||+|+|+.+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence 7999999999999999988764 358999999999865432 1 12345556667777764 5899999999988
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCC--CC-Ccchh--------hHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG--SS-SSRKN--------KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~--~~-~~~e~--------~~~w~~i~~l~~~lcw~~~~~ 353 (372)
|+ .++..+|++++++|||||.|++.+....... .. +.... ...-..+..+.++.+|+.+..
T Consensus 200 H~-~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 200 HR-KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred cc-CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 87 6777899999999999999999865332211 00 10000 011245667778889887743
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=128.42 Aligned_cols=114 Identities=29% Similarity=0.383 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
.+..+.+.+.+.+.++ .+|||||||.|.++.+++++. ...|+|+.+|+.+.+.|+++ |+. +.+.
T Consensus 48 ~~k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE
T ss_pred HHHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 3445566666666666 899999999999999999982 35699999999999988754 654 5566
Q ss_pred EeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..|..+++. +||.|++..++.|+. .+...+++++.++|+|||.+++....
T Consensus 118 ~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 118 LQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566665543 899999999999996 45678999999999999999987654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=126.59 Aligned_cols=117 Identities=24% Similarity=0.267 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
..-.+.+.+.+.+.++ .+|||||||.|.++.+++++- ..+|+|+++|++|.+.++++ |+. +.+.
T Consensus 58 ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 58 RAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 4557778888888887 999999999999999999983 36699999999999877764 665 3333
Q ss_pred EeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
-.| .+...+.||-|++...++|+. ++...+++.++++|+|||.+++.+.....
T Consensus 128 l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 128 LQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 223 333345599999999999997 44567999999999999999998765544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-14 Score=115.39 Aligned_cols=92 Identities=30% Similarity=0.333 Sum_probs=59.3
Q ss_pred EEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C-CCeEEEEeeccCCC-C-CCCCccEEEeccccccc
Q 017377 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G-LPAMIGNFISRQLP-Y-PSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 221 LDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g-l~~~~~~~d~~~lp-~-~~~sFDlV~~~~~~~~~ 293 (372)
||||||+|.++..+++.. ....++++|+|+.|++.|+++ . .......+...+.. . +.++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999885 568899999999999766655 2 12233333322222 1 22599999999887777
Q ss_pred cccHHHHHHHHHhcccCCeEE
Q 017377 294 DKKEGIFLIEADRLLKPGGYF 314 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~l 314 (372)
++...+++.+.++|+|||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 88889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=126.38 Aligned_cols=100 Identities=29% Similarity=0.334 Sum_probs=80.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--C---------eEEEEeeccCCCCCCCCccEEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P---------AMIGNFISRQLPYPSLSFDMVH 285 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~---------~~~~~~d~~~lp~~~~sFDlV~ 285 (372)
.++|||+|||.|.++..|+..| ..|+|+|.++.||+.|+++.- | ..+.+.+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 3679999999999999999887 569999999999999998711 1 11222222222 34599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|+.+++|. .++..++..+.++|||||.+++++.+...
T Consensus 164 csevleHV-~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEVLEHV-KDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 99998888 78888999999999999999999886544
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=124.85 Aligned_cols=103 Identities=22% Similarity=0.126 Sum_probs=83.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|..+..++........++++|+++.+++.|+++ ++ ++.+...+...+|+++++||+|+++.++ |
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~-~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI-N 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc-c
Confidence 7999999999998877766522335699999999999999875 33 3556666788889988999999998665 4
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+..+...++.++.++|||||.+++++...
T Consensus 158 ~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 158 LSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 44677789999999999999999987643
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-13 Score=119.70 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=97.5
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY 276 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~ 276 (372)
..++...++.... ++|.|+|||+|..+..|+.+- ....|+|+|.|++|++.|+++.++..+..+|.....
T Consensus 19 a~dLla~Vp~~~~--------~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~- 88 (257)
T COG4106 19 ARDLLARVPLERP--------RRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK- 88 (257)
T ss_pred HHHHHhhCCcccc--------ceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-
Confidence 4456666666554 789999999999999999884 457799999999999999999999999888776654
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
|+..+|++++|.+ +||.++-..+|..+...|.|||.+.+..|..-
T Consensus 89 p~~~~dllfaNAv-lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 89 PEQPTDLLFANAV-LQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred CCCccchhhhhhh-hhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 5688999999955 88888878899999999999999999988643
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=130.33 Aligned_cols=115 Identities=28% Similarity=0.319 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~ 271 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.. ...|+++|+|+.|++.|+++. +.+.+...+.
T Consensus 153 ~~k~~~l~~~l~l~~g--------~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~ 222 (383)
T PRK11705 153 EAKLDLICRKLQLKPG--------MRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence 3445566666666555 799999999999999998762 246999999999999998863 3444444454
Q ss_pred cCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+ +++||.|++..+++|.. .+...++.++.++|||||++++.+...
T Consensus 223 ~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 223 RDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 443 47899999998877774 344679999999999999999987643
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=116.14 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=90.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..++... ....++++|.++.|++.|+++ +++ +.+...+...++. +++||+|+|+..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---
Confidence 789999999999999888753 346799999999999887754 443 5667777777776 779999999742
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.+...++.++.++|+|||++++..+... -..+.+.++..+|.+...
T Consensus 122 --~~~~~~l~~~~~~LkpGG~lv~~~~~~~-------------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 --ASLSDLVELCLPLLKPGGRFLALKGRDP-------------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred --cCHHHHHHHHHHhcCCCeEEEEEeCCCh-------------HHHHHHHHHhcCceEeee
Confidence 3456799999999999999999865321 234667777789987654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-13 Score=134.14 Aligned_cols=124 Identities=19% Similarity=0.455 Sum_probs=106.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD- 294 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~- 294 (372)
..++|+|+.+|.|.|+++|.+..+.+|+|+++ ..++.+....+||+-..+.+. .+.+++.+.+||+||+++.+-.+.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcc
Confidence 56899999999999999999999999999988 567788889999998888776 678888889999999997766653
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 295 -KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 295 -~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+...+|.||+|+|||||+++|. +....-..++.++++|.|+.....
T Consensus 443 rC~~~~illEmDRILRP~G~~iiR-------------D~~~vl~~v~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 443 RCEMEDILLEMDRILRPGGWVIIR-------------DTVDVLEKVKKIAKSLRWEVRIHD 490 (506)
T ss_pred cccHHHHHHHhHhhcCCCceEEEe-------------ccHHHHHHHHHHHHhCcceEEEEe
Confidence 44567999999999999999998 445667788999999999988654
|
; GO: 0008168 methyltransferase activity |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=119.20 Aligned_cols=100 Identities=29% Similarity=0.340 Sum_probs=81.0
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+|||||||+|.++..+++... ...++++|+|+.+++.|+++ ++. +.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 699999999999999988742 35689999999999988875 332 45555566555665 58999999988777
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+ .+...++.++.++|+|||+++++++..
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 7 567789999999999999999998753
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-13 Score=124.93 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=80.5
Q ss_pred CCeEEEeCCCCcH----HHHHHHhcCC----ceeEEEEeeCCHHHHHHHHHcC--------C------------------
Q 017377 217 VQSVLDVGCGFGS----FGAHLVSLKL----MAVCVAVYEATGSQVQLALERG--------L------------------ 262 (372)
Q Consensus 217 ~~~VLDIGCG~G~----~~~~L~~~~~----~~~~v~gvD~s~~~v~~A~~rg--------l------------------ 262 (372)
+.+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3689999999995 5555655432 2468999999999999998641 1
Q ss_pred ------CeEEEEeeccCCCCCCCCccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 263 ------PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 263 ------~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+.+...|....++++++||+|+|.++++++.+ +...++.++.++|+|||++++...
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 245566677777777899999999988888853 335799999999999999999643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=115.40 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=84.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCCeE-EEEeeccCCC-CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAM-IGNFISRQLP-YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~~~-~~~~d~~~lp-~~~~sFDlV~~~~~~ 290 (372)
..|||||||||..-.++-.. ...+|+++|+++.|-++|.++ ...+. +++++.+++| ++++|+|.|+|..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 46899999999876666433 346799999999998766543 33444 7788889998 899999999999987
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
... +++.+.|.++.|+|||||.+++.......
T Consensus 156 CSv-e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 156 CSV-EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ecc-CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 776 88889999999999999999998765543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=135.60 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=83.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCC--CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP--YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++... ....++|+|+|+.|++.|+++ +.++.+...|...+| +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 789999999999998888764 346899999999999998875 344555666777777 8889999999997766
Q ss_pred ccc------------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWD------------KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~------------~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++. .+...+|+++.++|||||.+++.+..
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 552 24467999999999999999998764
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-12 Score=111.97 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=90.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.++||+|||.|..+.+|+++|. .|+++|.|+..++. |.+.++++.....|.....++ +.||+|++..++.+.
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 6899999999999999999984 58999999998864 445688888887887777775 689999997666665
Q ss_pred cc-cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCc-chhhHHHHHHHHHHHhcCeeEEeeecceEEEEe
Q 017377 294 DK-KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSS-RKNKSLLKVMEEFTEKICWSLIAQQDETFIWQK 362 (372)
Q Consensus 294 ~~-~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~-~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K 362 (372)
.. ....++..|...++|||++++...........|. .+..-.-.++..+.. .|+++.-..+...-+|
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 43 3457899999999999999986543322111000 011111122333323 5998865555554444
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-12 Score=115.26 Aligned_cols=103 Identities=25% Similarity=0.230 Sum_probs=85.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------CCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++........++++|+++.+++.++++. .++.+...+...+++++++||+|+++.+++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 68999999999999999887543467999999999999888762 235566667777778788999999988766
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
++ .+...+|.++.++|+|||.+++.+...
T Consensus 133 ~~-~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 133 NV-PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cC-CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 55 677789999999999999999876543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=114.29 Aligned_cols=102 Identities=26% Similarity=0.248 Sum_probs=84.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||+|||+|.++..+++.......++++|+++.+++.++++.. .+.+...+....++++++||+|+++.++++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~- 119 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV- 119 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc-
Confidence 789999999999999998876433579999999999999887642 3456666777788888899999998876555
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+...+++++.++|+|||++++.+..
T Consensus 120 ~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 120 TDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 67778999999999999999987753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=111.96 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=74.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+++||+|||.|.++..|+.+. -.++++|+|+..++.|++|- .++.+...+... ..|+++||+|+++.+++.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCC
Confidence 789999999999999999873 56899999999999999883 236666665544 35789999999999988885
Q ss_pred c--cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 K--KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~--~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+ +...++..+...|+|||.+++-..
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3 345789999999999999999765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=114.09 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=77.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+|||||||+|.++..|++. ......++|+|+|+.|++.|+++. .++.+...+...+++++++||+|+|+.+++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 378999999999998888753 112357999999999999998763 223444455666777788999999999988
Q ss_pred ccccc-HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWDKK-EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~-~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+.++ ...+|+++.|+++ |.+++.+..
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 87543 2469999999998 566666544
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-11 Score=106.68 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=86.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..++..+. .++++|+++.+++.++++ +..+.+...|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6799999999999999998763 689999999999988764 445555555554432 4689999998665444
Q ss_pred ccc--------------------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKK--------------------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~--------------------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.+. ...++.++.++|+|||.+++..+.... -..+.++.++.+|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~------------~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG------------EPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC------------hHHHHHHHHhCCCeEEEE
Confidence 211 235799999999999999998764331 123455556677776654
Q ss_pred e
Q 017377 354 Q 354 (372)
Q Consensus 354 ~ 354 (372)
+
T Consensus 164 ~ 164 (179)
T TIGR00537 164 A 164 (179)
T ss_pred E
Confidence 4
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=111.98 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMI 266 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~ 266 (372)
...+.+.+.+.+..... ...+|||||||+|.++..+++.+ ..++|+|+++.+++.|+++ +. .+.+
T Consensus 38 ~~~~~~~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~ 108 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPL------KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEF 108 (219)
T ss_pred HHHHHHHHHHHHhcCCC------CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence 34455556666652111 23789999999999999998874 4689999999999988875 22 3556
Q ss_pred EEeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCC------CCCC-----CcchhhH
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP------RGSS-----SSRKNKS 334 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~------~~~~-----~~~e~~~ 334 (372)
...+...++ ++||+|++..+++|+. ++...++.++.+++++++++.+....... .... +......
T Consensus 109 ~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
T TIGR02021 109 EVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLH 185 (219)
T ss_pred EECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEe
Confidence 666665554 7899999998887875 34567899999999987776654221100 0000 0000111
Q ss_pred HHHHHHHHHHhcCeeEEeee
Q 017377 335 LLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 335 ~w~~i~~l~~~lcw~~~~~~ 354 (372)
.-+.++.+.+..+|+.+..+
T Consensus 186 ~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 186 PMTDLERALGELGWKIVREG 205 (219)
T ss_pred cHHHHHHHHHHcCceeeeee
Confidence 23456777788889888654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-12 Score=114.41 Aligned_cols=101 Identities=25% Similarity=0.254 Sum_probs=79.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeec-cCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFIS-RQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~-~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++.. ....++++|+|+.+++.|+++ ++ ++.+...++ ..++ +++++||+|++++.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 689999999999999998764 335799999999999988764 33 356676776 6666 77889999999754
Q ss_pred cccccc--------cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDK--------KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~--------~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+|.. ....++.++.++|+|||+++++.++
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 23321 1246899999999999999998764
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=99.28 Aligned_cols=97 Identities=24% Similarity=0.181 Sum_probs=73.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC-CCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.... ..++++|+++.+++.++++ +. ++.+...+... ++...++||.|++.....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 68999999999999999987433 6799999999999887653 33 24444444433 333346899999975422
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+++++.++|+|||++++...
T Consensus 100 ----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 ----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 234689999999999999999753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=109.26 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=92.5
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC--eEE
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP--AMI 266 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~--~~~ 266 (372)
+........+...+.+.+..+ .+.-|||||||+|..+..|.+.| ..++|+|+|+.|++.|.++.+. ...
T Consensus 29 i~~IQ~em~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil 99 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLIL 99 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeee
Confidence 333334445555566655543 44789999999999999998876 4488999999999999987665 445
Q ss_pred EEeeccCCCCCCCCccEEEecccccccc-------ccH----HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWD-------KKE----GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~-------~~~----~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++. +-+||.+++||.|++... +.|. .++ ..++..++.+|++|+..++...+.+.
T Consensus 100 ~DMG-~GlpfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 100 CDMG-EGLPFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred eecC-CCCCCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence 5553 779999999999999744 5663 122 24677899999999999999876544
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=126.19 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=81.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeecc--CCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISR--QLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~--~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..|++.+ ..++++|+++.+++.+.+.. .++.+...++. .+|+++++||+|+|+.+++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 689999999999999999874 36899999999998876542 23445555553 57788899999999988777
Q ss_pred cccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.++ ...++.++.++|||||++++.+...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 7543 4579999999999999999987544
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-11 Score=110.44 Aligned_cols=100 Identities=21% Similarity=0.031 Sum_probs=77.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCC----------------CeEEEEeeccCCCCC-CC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGL----------------PAMIGNFISRQLPYP-SL 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl----------------~~~~~~~d~~~lp~~-~~ 279 (372)
.+|||+|||.|..+..|+++|. .|+|+|+|+.+++.+. ++++ .+.+.+.|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 6899999999999999999874 5999999999999753 3333 344556666665532 46
Q ss_pred CccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCC
Q 017377 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.||.|+-..+++|++++. ..++..+.++|||||++++.+..
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 799999987878886544 46899999999999987766543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=110.10 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=71.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++.......|+++|+++ |. ...++.+.+.|+...+ +.+++||+|+|+.+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 6899999999999999998754446799999988 21 1123556666666643 66789999999754
Q ss_pred cccccccH-----------HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 290 GIIWDKKE-----------GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~~~~-----------~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.++..++ ..+|.++.++|+|||.|++.....
T Consensus 127 -~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 127 -PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 3332221 358999999999999999987643
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=102.52 Aligned_cols=113 Identities=23% Similarity=0.262 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeec
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFIS 271 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~ 271 (372)
.+.+.+.+..... .+|||+|||+|..+..++..+.. ..++++|+++.+++.++++ ++. +.+...|.
T Consensus 20 t~lL~~~l~~~~~--------~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~ 90 (170)
T PF05175_consen 20 TRLLLDNLPKHKG--------GRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHHTT--------CEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST
T ss_pred HHHHHHHHhhccC--------CeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccc
Confidence 4455555554333 68999999999999999988654 5599999999999988764 555 55555544
Q ss_pred cCCCCCCCCccEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~~----~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +.++++||+|+|+--++.-.. -...++.+..+.|+|||.+++...
T Consensus 91 ~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 91 FE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 32 344789999999854222222 134689999999999999988765
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=109.35 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=79.9
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEe
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNF 269 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~ 269 (372)
....+.+.+...++ .+|||||||+|..+..+++.......++++|+++.+++.|+++ ++. +.+...
T Consensus 60 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 60 MVAMMCELIEPRPG--------MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34556666655554 7899999999999988887632234699999999999888764 432 456666
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|........++||+|++..+..+. ..++.++|+|||.+++...
T Consensus 132 d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 132 DGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEEc
Confidence 665544456799999998765443 3578899999999988653
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=115.14 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=92.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH---HHHc-CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL---ALER-GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~---A~~r-gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
++|||||||.|.++..|+.+|. ..|+|+|.+....-. +++- |.. +.......+.+|. .++||+|+|.++++
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 8999999999999999999875 468999999866532 2221 222 2333356788887 78999999999999
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCC-----------CCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGS-----------SSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~-----------~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
|. .+|-..|.+++..|+|||.+++.+........ ++..-....-..+..+.++.+|+-+.
T Consensus 194 Hr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 194 HR-RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred cc-CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 97 77777999999999999999986653322100 00001112245567777888887653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.5e-11 Score=104.91 Aligned_cols=95 Identities=25% Similarity=0.330 Sum_probs=73.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..++.... ...++++|.++.|++.++++ ++ ++.+...++..++ .+++||+|+|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 7899999999999999876542 35699999999998776543 55 3666777777664 357999999874 2
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...++..+.++|+|||.+++...
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2334578889999999999998853
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=114.20 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~ 269 (372)
+.-.+.+.+.++.... .+|||+|||+|.++..++++.. ...++++|+|+.+++.|+++ ++...+...
T Consensus 182 D~gt~lLl~~l~~~~~--------g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~ 252 (342)
T PRK09489 182 DVGSQLLLSTLTPHTK--------GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFAS 252 (342)
T ss_pred CHHHHHHHHhccccCC--------CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEc
Confidence 3334556666654332 5799999999999999998753 35699999999999888753 555555444
Q ss_pred eccCCCCCCCCccEEEecccccccc----ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWD----KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~----~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|... ..+++||+|+|+..++... .....++.++.++|+|||.++++...
T Consensus 253 D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 253 NVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 4332 2367899999997644321 22357899999999999999998763
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=106.73 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=89.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-C-CCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-L-PYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-l-p~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.. ...++++|+++.+++.|+++++..... +... + ++++++||+|+|+.+++|+ .
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~--d~~~~l~~~~~~sfD~Vi~~~~l~~~-~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQG--DLDEGLEAFPDKSFDYVILSQTLQAT-R 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEE--EhhhcccccCCCCcCEEEEhhHhHcC-c
Confidence 589999999999999887653 235689999999999998877665544 4433 4 4778899999999887666 6
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC---------CCCCC------------cchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP---------RGSSS------------SRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~---------~~~~~------------~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
++..+|+++.|++++ .+++.|+... ....+ +.......+.+..+.+..+++++...
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 777899999887654 4555444311 00000 00122345667778888888887543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=112.58 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=71.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCe------EEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPA------MIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~------~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
+.++|+|||+|..+..++++- -.|+|+|+|++|++.|++..... ...+.++..|--.++|.|+|+|..| .
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-V 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-H
Confidence 589999999997676666652 45889999999999998753221 1222222233334899999999998 7
Q ss_pred cccccHHHHHHHHHhcccCCe-EEEEEeCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGG-YFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG-~lvis~p~ 320 (372)
|| -+...+.++++|+||+.| .+.+-..+
T Consensus 111 HW-Fdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HW-FDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hh-hchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 88 556669999999999876 66655544
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=110.10 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++++.+ ...++++|. +.+++.++++ ++. +.+...|....++++ +|+|+++++++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh 226 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILY 226 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhh
Confidence 7999999999999999998864 356889997 6888877654 443 445556665556653 69999988888
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 292 IWDKKE-GIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 292 ~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+|.++. ..+|++++++|+|||.+++.+....
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 886543 5799999999999999999986443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=108.60 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=80.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCC-CCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP-YPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp-~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +..+.+...+....+ ..++.||+|++..++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 689999999999999998874 4589999999999988765 444455555555544 34579999999988776
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. .++..+|.++.++|+|||.++++.+..
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6 667779999999999999999987753
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=107.08 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
......+.+.+...++ .+|||||||+|.++..+++.......++++|+++.+++.|+++ ++ ++.+..
T Consensus 62 p~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred HHHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 3455566666666665 7999999999999998887633345799999999999988865 44 356666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.|....+.+.+.||+|++.....+ +...+.+.|||||.+++...
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEEc
Confidence 676655556789999999765333 23467778999999998643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=114.81 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC----CeE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL----PAM 265 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl----~~~ 265 (372)
+.-.+.+.+.++.... .+|||+|||+|.++..++++++ ...++++|+|+.+++.|+++ +. .+.
T Consensus 214 D~GtrllL~~lp~~~~--------~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 214 DIGARFFMQHLPENLE--------GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred ChHHHHHHHhCCcccC--------CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEE
Confidence 3345567777765433 5899999999999999998864 36799999999999998865 22 223
Q ss_pred EEEeeccCCCCCCCCccEEEeccccccc---ccc-HHHHHHHHHhcccCCeEEEEEe
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIW---DKK-EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~---~~~-~~~~L~el~rvLkPGG~lvis~ 318 (372)
+...|... .+++++||+|+|+-.++.. .++ ...++.++.++|+|||.++++.
T Consensus 285 ~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 285 FMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33333221 2345689999998553322 111 2468999999999999999995
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=108.40 Aligned_cols=101 Identities=25% Similarity=0.271 Sum_probs=78.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC---CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP---YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp---~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..++.+.. ...++|+|+++.+++.|+++ ++ ++.+...|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 6899999999999999998754 36799999999999887654 33 4566666665543 56679999998854
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+|.... ..++.++.++|||||.+++.+..
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4443221 35899999999999999998653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-10 Score=101.37 Aligned_cols=115 Identities=22% Similarity=0.139 Sum_probs=81.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++... ...++++|+++.+++.|+++ ++ .+.+...+.. .++ .++||+|++.....
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~- 108 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGG- 108 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCcc-
Confidence 7899999999999999988753 36799999999999988764 33 2444444432 233 36899999975422
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
....++.++.++|+|||++++....... ...+..+.++.+++.+
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~~~------------~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILLEN------------LHSALAHLEKCGVSEL 152 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecHhh------------HHHHHHHHHHCCCCcc
Confidence 2345889999999999999997653221 2344455566666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-11 Score=111.87 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=96.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CC-CCCCCccEEEecccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP-YPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp-~~~~sFDlV~~~~~~~~~~ 294 (372)
-+++||+|||||.++..|.+. ...++|+|+|++|++.|.++++--...+.+... ++ ..++.||+|++..++..+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl- 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL- 201 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh-
Confidence 378999999999999998876 245899999999999999998754433333332 22 456889999999886655
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC---CcchhhHHHHHHHHHHHhcCeeEEeeecc
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKNKSLLKVMEEFTEKICWSLIAQQDE 356 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~~e~~~~w~~i~~l~~~lcw~~~~~~~~ 356 (372)
-+.+.++.-+...|+|||.|.+|.-........ |.......-.-+.+..+..+.+++.....
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 556668899999999999999997544332211 11111122333556667778888766543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=109.98 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=72.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++............+..+++||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH---
Confidence 7899999999999988887753 4689999999999988875 333222222111234456799999997432
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.....++.++.++|+|||++++++..
T Consensus 236 -~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 -EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 22346899999999999999999863
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=106.32 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=92.9
Q ss_pred eeecCCCcccc--cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH
Q 017377 180 IAFHSEDGLVF--DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA 257 (372)
Q Consensus 180 ~~F~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A 257 (372)
..|.. ...+| +..+.-.+.+.+.++...+ .+|||+|||.|.++..+++..+ ...++.+|++...++.|
T Consensus 129 ~~~~t-~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 129 LTFKT-LPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESA 198 (300)
T ss_pred eEEEe-CCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHH
Confidence 33444 33455 3445556788888887665 4899999999999999999876 46799999999999999
Q ss_pred HHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccccccHH----HHHHHHHhcccCCeEEEEEeC
Q 017377 258 LER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEG----IFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 258 ~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~----~~L~el~rvLkPGG~lvis~p 319 (372)
+++ ++.......+..-.+..+ +||+|+||--++.-..-.. .++.+..+.|++||.|+|+..
T Consensus 199 r~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 199 RKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 875 444322222223344444 9999999965443322222 689999999999999999977
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=105.99 Aligned_cols=109 Identities=22% Similarity=0.179 Sum_probs=80.4
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEee
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFI 270 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d 270 (372)
....+.+.+...++ .+|||||||+|.++..|++.......++++|+++.+++.|+++ ++ ++.+...|
T Consensus 65 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 65 MVAMMTELLELKPG--------MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHhCCCCc--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 44566666666555 7999999999999999988743345689999999999988765 44 35556566
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..........||+|++.....+ +...+.+.|+|||++++...
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cccCCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEEc
Confidence 5554444568999998755332 34567889999999998754
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.8e-10 Score=102.78 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=80.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeeccC----CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQ----LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~~----lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++... ...|+++|+++.|++.+.++ ..++.+...|... .+++ ++||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC-
Confidence 7999999999999999988732 35799999999988754332 1234444445432 1223 56999986522
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.+.....++.++.++|||||.++++.+........ +.....+......+..+++.+..
T Consensus 151 --~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~---~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 151 --QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK---DPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred --ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC---CHHHHHHHHHHHHHHcCCeEEEE
Confidence 11122356899999999999999975432111010 11111222335556668877644
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=109.97 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHh-cCCceeEEEEeeCCHHHHHHHHHc-----CC--CeEEEEeeccCCCCCCCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVS-LKLMAVCVAVYEATGSQVQLALER-----GL--PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~-~~~~~~~v~gvD~s~~~v~~A~~r-----gl--~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
.+++|+|||||.|.++..++. .......++++|.++++++.|++. ++ .+.+...|+.+.+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 348999999998865544433 334556799999999999988864 22 2556666666554335789999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++++|. ++...+|..+.+.|+|||++++...
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 888885 6777899999999999999999873
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=107.05 Aligned_cols=101 Identities=27% Similarity=0.348 Sum_probs=81.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCC-CCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYP-SLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~-~~sFDlV~~~~~~ 290 (372)
..+|||+|||+|.++..+++.+. .++++|.++.+++.++++ ++ ++.+...+....+.+ +++||+|+++.++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 36899999999999999887653 488999999999888764 44 355655666555544 3789999999876
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
++. .++..+|.++.++|+|||.+++++++.
T Consensus 123 ~~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHV-PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhC-CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 665 677789999999999999999988654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=110.87 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=83.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC----------CeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL----------PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl----------~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++.. .+.+...|... .+++||+|+|.
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 689999999999999999875 469999999999999887621 23344444332 35889999999
Q ss_pred cccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCCC-------CCCC--cc---hhhHHHHHHHHHHHhcCeeEEeee
Q 017377 288 QCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKPR-------GSSS--SR---KNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 288 ~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~~-------~~~~--~~---e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+++|+.++. ..++..+.+ +.+||.++...+..... ..++ .. .....-+.++.+.+..+|++....
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 9988885443 245666664 45666644333321110 0000 00 000113556777788889876443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-10 Score=103.47 Aligned_cols=112 Identities=26% Similarity=0.317 Sum_probs=79.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ ++...+ .++..+.+||+|+++...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~--- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA--- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH---
Confidence 78999999999999888876542 489999999999988875 331111 112222379999997431
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.....++.++.++|||||++++++..... .+.+....++.+++....
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~------------~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQ------------ADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhh------------HHHHHHHHHHCCCEEEEE
Confidence 22345889999999999999999764321 234455557778876643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=113.27 Aligned_cols=101 Identities=28% Similarity=0.354 Sum_probs=79.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC--CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL--PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l--p~~~~sFDlV~~~~~~ 290 (372)
..+||||||+|.++..++...+ ...++|+|+++.+++.|.++ ++ ++.+...|+..+ .+++++||.|++++.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP- 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP- 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence 5899999999999999998864 46799999999998776543 55 355666676543 578999999998754
Q ss_pred ccccccH------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKE------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..|.... ..++.++.|+|+|||.+.+.+-.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 5564322 36899999999999999997653
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=104.16 Aligned_cols=96 Identities=21% Similarity=0.029 Sum_probs=74.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCC----------------eEEEEeeccCCCCC-CC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLP----------------AMIGNFISRQLPYP-SL 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~----------------~~~~~~d~~~lp~~-~~ 279 (372)
.+|||+|||.|..+..|+++|. .|+|+|+|+.+++.+. ++++. +.+.+.|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 6899999999999999999874 5999999999999763 44443 34455566655432 25
Q ss_pred CccEEEeccccccccccH-HHHHHHHHhcccCCeEEEE
Q 017377 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvi 316 (372)
.||+|+-..+++|.+++. ..++..+.++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999887777776444 4799999999999997554
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=100.87 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=74.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..++..+. ..++++|+++.+++.++++ ++++.+...|... .+++++||+|+++--...-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 6899999999999999987642 3689999999999877764 4555555555543 3567899999997332211
Q ss_pred cc--------------------cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 294 DK--------------------KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 294 ~~--------------------~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ....++.++.++|||||.+++.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 01 12357888999999999999876543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-10 Score=100.23 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=72.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccC-CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~-lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..++........++++|+++.+++.|+++ ++ ++.+...+... ++..++.||.|++...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~- 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG- 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-
Confidence 7899999999999998876522335699999999999987754 42 34454455543 2333468999998632
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+...++.++.++|+|||.+++...
T Consensus 121 ---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 121 ---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 24556799999999999999998655
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=96.65 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=83.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..++..+ ..++++|.++.+++.++++ +.. +.+...|... ++++++||+|+++...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 689999999999999999873 5689999999999888654 332 4444444433 4556689999987543
Q ss_pred cccc--------------------ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeE
Q 017377 291 IIWD--------------------KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSL 350 (372)
Q Consensus 291 ~~~~--------------------~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~ 350 (372)
.+.. .....++.++.++|+|||.+++..+.... -+.+..+.+..+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~------------~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG------------EDEVLEYLEKLGFEA 168 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC------------HHHHHHHHHHCCCee
Confidence 3210 11235789999999999999988753321 123455666677765
Q ss_pred Ee
Q 017377 351 IA 352 (372)
Q Consensus 351 ~~ 352 (372)
..
T Consensus 169 ~~ 170 (188)
T PRK14968 169 EV 170 (188)
T ss_pred ee
Confidence 54
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-10 Score=108.62 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
.....+.+.....++ .+|||+|||+|.++..++..+ ..++|+|+++.|++.|+++ ++. +.+...
T Consensus 169 ~la~~~~~l~~~~~g--------~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~ 237 (329)
T TIGR01177 169 KLARAMVNLARVTEG--------DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG 237 (329)
T ss_pred HHHHHHHHHhCCCCc--------CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec
Confidence 344455555544444 789999999999988776654 5689999999999887765 443 456677
Q ss_pred eccCCCCCCCCccEEEeccc--c---ccc--c-ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQC--G---IIW--D-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~--~---~~~--~-~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
|+.++|+++++||+|+++-- . ... . +....++.++.++|+|||++++..|..
T Consensus 238 D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 238 DATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred chhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 88889988899999999621 1 010 1 113568999999999999999998754
|
This family is found exclusively in the Archaea. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=95.61 Aligned_cols=100 Identities=33% Similarity=0.412 Sum_probs=77.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..+++.+ ...++++|+++..++.|+.+ +. ++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 579999999999999999886 47799999999999988875 33 3667777766654 78899999999844
Q ss_pred ccccc-------ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWD-------KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~-------~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..... .....+++++.++|+|||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33221 1124689999999999999999876
|
... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-10 Score=103.36 Aligned_cols=91 Identities=26% Similarity=0.289 Sum_probs=69.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.+. .++++|+|+.+++.|+++ +. .+.+...+ ++..+++||+|++..+++
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 6899999999999999998753 489999999999999875 22 23444443 455678999999998887
Q ss_pred cccc-cHHHHHHHHHhcccCCeEE
Q 017377 292 IWDK-KEGIFLIEADRLLKPGGYF 314 (372)
Q Consensus 292 ~~~~-~~~~~L~el~rvLkPGG~l 314 (372)
|+.. +...++.++.+++++++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEE
Confidence 8753 3346888888877654443
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-10 Score=107.68 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=82.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe--EEEEeeccCCCCCC-CCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGNFISRQLPYPS-LSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~--~~~~~d~~~lp~~~-~sFDlV~~~~~ 289 (372)
+++|||+|||+|.++...++.|. ..+.|+|+++..++.|+++ +++. ....+ ..+..+. +.||+|++|-.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~--~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGF--LLLEVPENGPFDVIVANIL 238 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc--cchhhcccCcccEEEehhh
Confidence 37999999999999999999875 4588999999999988875 5542 12211 1222333 59999999842
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
. +-...+..++.+.|||||++++|+... .+.+...+.+ ++.+|++...
T Consensus 239 A----~vl~~La~~~~~~lkpgg~lIlSGIl~-----------~q~~~V~~a~-~~~gf~v~~~ 286 (300)
T COG2264 239 A----EVLVELAPDIKRLLKPGGRLILSGILE-----------DQAESVAEAY-EQAGFEVVEV 286 (300)
T ss_pred H----HHHHHHHHHHHHHcCCCceEEEEeehH-----------hHHHHHHHHH-HhCCCeEeEE
Confidence 1 223468889999999999999998632 2233333334 5667777644
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=108.32 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=74.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------CCCeEEEEeeccC-CCCCCCC----ccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQ-LPYPSLS----FDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------gl~~~~~~~d~~~-lp~~~~s----FDlV~~ 286 (372)
.+|||+|||+|..+..|++.......++++|+|+.|++.|.++ ++++.....|+.+ ++++... ..++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 6799999999999999998743346799999999999888765 2334445566654 3444332 233444
Q ss_pred cccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 287 AQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 287 ~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
...+.++. ++...+|+++.++|+|||.|++......
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 44455554 2344789999999999999998765443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-10 Score=105.45 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=81.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHH----HHHHHHHcCCCeEEEEeeccC---CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS----QVQLALERGLPAMIGNFISRQ---LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~----~v~~A~~rgl~~~~~~~d~~~---lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++.......|+++|+++. +++.|+++ .++.....|+.. ...+..+||+|++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-
Confidence 79999999999999999987333456999999986 45555544 234444444432 2223468999999742
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
. .++...++.++.++|||||+|+|...... .+..++.+.... +++ +..++.+++.+
T Consensus 212 -~-pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~pe~~f~-~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 212 -Q-PDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAKPEVVFA-SEV-QKLKKEGLKPK 267 (293)
T ss_pred -C-cchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCCHHHHHH-HHH-HHHHHcCCceE
Confidence 2 23444577899999999999999543322 233333333333 334 34466666644
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=105.18 Aligned_cols=116 Identities=24% Similarity=0.290 Sum_probs=80.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++...++.|. ..++++|+++.+++.|+++ ++...+.... ......+.||+|++|-. .
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~---~ 235 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL---A 235 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES----H
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC---H
Confidence 7999999999999999998875 4589999999999988875 5554333221 22344589999999833 1
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
+-...++..+.++|+|||++++|+..... .+.+.+..++ ++++....
T Consensus 236 -~vL~~l~~~~~~~l~~~G~lIlSGIl~~~------------~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 236 -DVLLELAPDIASLLKPGGYLILSGILEEQ------------EDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp -HHHHHHHHHCHHHEEEEEEEEEEEEEGGG------------HHHHHHHHHT-TEEEEEEE
T ss_pred -HHHHHHHHHHHHhhCCCCEEEEccccHHH------------HHHHHHHHHC-CCEEEEEE
Confidence 22345778899999999999999874321 2333333355 88876543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-10 Score=86.15 Aligned_cols=97 Identities=32% Similarity=0.341 Sum_probs=73.7
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---C--CCeEEEEeeccCCCC-CCCCccEEEecccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G--LPAMIGNFISRQLPY-PSLSFDMVHCAQCGII 292 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---g--l~~~~~~~d~~~lp~-~~~sFDlV~~~~~~~~ 292 (372)
+|+|+|||+|.++..+++. ....++++|.++.+++.+++. . ....+...+...... ..++||+|+++.++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999873 346789999999999888721 1 123444444444442 5678999999987555
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
+......++..+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3466677999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=95.44 Aligned_cols=96 Identities=20% Similarity=0.089 Sum_probs=68.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++........++++|+++.+ ....+.+...+..+.+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 789999999999999988774344569999999865 1123444444554432 45678999998643
Q ss_pred cc---cccc-------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GI---IWDK-------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~---~~~~-------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +|.. ....++.++.++|+|||++++...
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 11 1211 124689999999999999999764
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-10 Score=98.90 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=65.2
Q ss_pred EEeeCCHHHHHHHHHcC--------CCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEE
Q 017377 245 AVYEATGSQVQLALERG--------LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 245 ~gvD~s~~~v~~A~~rg--------l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvi 316 (372)
+|+|+|+.|++.|+++. .++.+...|+.++|+++++||+|++.++++++ ++...+|++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 47899999999997542 13567778899999999999999999886666 7888899999999999999999
Q ss_pred EeCCCC
Q 017377 317 TSPESK 322 (372)
Q Consensus 317 s~p~~~ 322 (372)
.+....
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 887643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=98.91 Aligned_cols=100 Identities=26% Similarity=0.335 Sum_probs=73.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..+++... ...++++|+++.+++.|+++ ++. +.+...+... ++++++||+|+|+--...
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 5899999999999999998642 35799999999999988764 443 5555555544 466789999999632111
Q ss_pred ------ccc-------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 ------WDK-------------------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ------~~~-------------------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.. ....++.++.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 100 012568899999999999999753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-10 Score=100.78 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=94.6
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCC-ceeEEEEeeCCHHHHHHHHHcCC-----
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL-MAVCVAVYEATGSQVQLALERGL----- 262 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~-~~~~v~gvD~s~~~v~~A~~rgl----- 262 (372)
+|.......+++-+.++.... .+.+|||||||.|...-.+++... ....+.+.|.|+.+++..+++.-
T Consensus 50 FfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~ 123 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR 123 (264)
T ss_pred ccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh
Confidence 344444455566666654433 223899999999999988887642 23778999999999999887621
Q ss_pred -CeEEEEeeccC--CCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 263 -PAMIGNFISRQ--LPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 263 -~~~~~~~d~~~--lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+.+.+++... -|.+.+++|+|++.+++...+++. ..++.++.++|||||.+++.+.....
T Consensus 124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 23344443333 356789999999999988876554 47999999999999999999887765
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.5e-10 Score=96.40 Aligned_cols=103 Identities=24% Similarity=0.297 Sum_probs=80.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.+...|++.++.. .++|+|.|+.+++.|+. ++.+ +.+.++|+..-.+..+.||+|+--..+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 489999999999999999998763 38999999999987653 3555 6788888877778889999998643322
Q ss_pred cc--c-c----cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IW--D-K----KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~--~-~----~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+ . + .+..++..+.++|+|||+|+|+..+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 22 1 1 11347888999999999999998764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=96.99 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=73.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
..|-|+|||.+.++..+.. + ..|...|.-.. +.. +...|+..+|++++++|++++. +--|..+.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~---~~V~SfDLva~--------n~~--Vtacdia~vPL~~~svDv~Vfc--LSLMGTn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-K---HKVHSFDLVAP--------NPR--VTACDIANVPLEDESVDVAVFC--LSLMGTNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH--S-------EEEEESS-S--------STT--EEES-TTS-S--TT-EEEEEEE--S---SS-H
T ss_pred EEEEECCCchHHHHHhccc-C---ceEEEeeccCC--------CCC--EEEecCccCcCCCCceeEEEEE--hhhhCCCc
Confidence 5899999999999876542 2 34666676431 212 3345789999999999999985 44556777
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeec-----ceEEEEecCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQD-----ETFIWQKTVD 365 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~-----~~~iw~K~~~ 365 (372)
..++.|..|+|||||.|+|....... + .-+.+....+++++++..+.. -.+.++|..+
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf-------~---~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRF-------E---NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG--------S----HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred HHHHHHHHheeccCcEEEEEEecccC-------c---CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 78999999999999999999764322 1 123334445889999998652 4567777664
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-09 Score=94.22 Aligned_cols=108 Identities=21% Similarity=0.191 Sum_probs=75.8
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~ 273 (372)
.+.+.+...++ .+|||+|||+|.++..++... ....++++|.++.+++.++++ ++ ++.+...++..
T Consensus 31 ~l~~~l~~~~~--------~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 31 LLISQLRLEPD--------SVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 45566655444 789999999999999988653 236799999999999988764 43 34455444432
Q ss_pred -CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 274 -lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++.....+|.|+... ..+...++.++.++|+|||++++..+.
T Consensus 102 ~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 222223467765432 234457899999999999999999764
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-09 Score=95.16 Aligned_cols=106 Identities=22% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEee
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFI 270 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d 270 (372)
....+.+.+...++ .+|||||||+|.++..+++.. ..++++|+++.+++.|+++ ++. +.+...+
T Consensus 66 ~~~~l~~~l~~~~~--------~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 66 MVARMTELLELKPG--------DRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 34455555555444 789999999999998887763 2589999999999888765 342 4555555
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
......+.++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 135 ~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 135 GWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 4332223478999999765333 34567899999999999866
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=104.31 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=83.2
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEE--EEeec
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMI--GNFIS 271 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~--~~~d~ 271 (372)
..+...+...++ .+|||+|||+|..+..+++... ...++++|+++.+++.++++ |+.+.+ .+.+.
T Consensus 228 ~~~~~~L~~~~g--------~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 228 QWVATWLAPQNE--------ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHHHhCCCCC--------CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 355555655555 7899999999999999988643 46799999999999877655 655333 44454
Q ss_pred cCCCC--CCCCccEEEec----c-cccccccc----------------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 272 RQLPY--PSLSFDMVHCA----Q-CGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 272 ~~lp~--~~~sFDlV~~~----~-~~~~~~~~----------------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...++ +.++||.|++. . +..+-.++ ...+|.++.++|||||.+++++.....
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 44443 56789999952 1 11211121 246899999999999999999887655
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=93.90 Aligned_cols=110 Identities=15% Similarity=-0.016 Sum_probs=85.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH-----------------cCCCeEEEEeeccCCCCC---
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-----------------RGLPAMIGNFISRQLPYP--- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~-----------------rgl~~~~~~~d~~~lp~~--- 277 (372)
.+||+.|||.|.-+..|+++|. .|+|+|+|+..++.+.+ ++..+.+.++|...++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 6899999999999999999985 48999999999988754 134566777777777642
Q ss_pred CCCccEEEeccccccccccHH-HHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc
Q 017377 278 SLSFDMVHCAQCGIIWDKKEG-IFLIEADRLLKPGGYFVLTSPESKPRGSSSSR 330 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~~~~~-~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~ 330 (372)
.+.||+|+-..++++++++.. .+.+.+.++|+|||.+++...........|+.
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf 175 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPY 175 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCC
Confidence 268999998878888875554 78999999999999999877644332333433
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-09 Score=104.25 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=82.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQL 274 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~l 274 (372)
.+...+...++ .+|||+|||+|..+..+++.... ..++++|+++.+++.++++ |+.+.+...|+..+
T Consensus 235 ~~~~~l~~~~g--------~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 235 LAATLLAPQNG--------ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred HHHHHcCCCCC--------CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 44445555444 78999999999999999987532 5799999999999888755 55666666676655
Q ss_pred C--CCCCCccEEEecc----c--c-----cccccc----------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 275 P--YPSLSFDMVHCAQ----C--G-----IIWDKK----------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 275 p--~~~~sFDlV~~~~----~--~-----~~~~~~----------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+ ++.++||.|++.- . + ..|... ...+|.++.++|||||++++++.....
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 4 3467899999532 1 0 011111 235899999999999999999875544
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=97.01 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
..|.|+|||.+.++..-. ..|+..|+.. ++-.+...|+.++|.+++|.|++++ |+.-|..+.
T Consensus 182 ~vIaD~GCGEakiA~~~~------~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~--CLSLMgtn~ 243 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSER------HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVF--CLSLMGTNL 243 (325)
T ss_pred eEEEecccchhhhhhccc------cceeeeeeec----------CCCceeeccccCCcCccCcccEEEe--eHhhhcccH
Confidence 579999999998765211 2245556532 2223444578899999999999997 455667888
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee-----cceEEEEecC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ-----DETFIWQKTV 364 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~-----~~~~iw~K~~ 364 (372)
..++.|++|+|+|||.++|....... ..... +..-...++|...... +..+.++|+.
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf-------~dv~~---f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRF-------SDVKG---FVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhc-------ccHHH---HHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 88999999999999999999764333 11111 2223377888876553 4567888876
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=95.47 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=72.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG- 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~- 290 (372)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 6899999999999999998743 35799999999999988865 543 4555555432 3456689999997110
Q ss_pred -----ccc----c--c------------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 -----IIW----D--K------------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 -----~~~----~--~------------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+. . + ....++.++.++|+|||++++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 000 0 0 113578889999999999998765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=99.71 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|.++..+++.......|+++|.++.+++.|+++ +.. +.+...
T Consensus 67 ~l~a~ll~~L~i~~g--------~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g 138 (322)
T PRK13943 67 SLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG 138 (322)
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 344455555555444 7899999999999999987633223588999999999888763 443 455555
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|....+.+.++||+|++.....+ ....+.+.|+|||.+++..
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 65555545578999999754332 2345678999999998854
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=95.09 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=75.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|..+..++++... ..++++|+++.+.+.|+++ ++ .+.+.+.|..++. ....+||+|+||--
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 78999999999999999988433 7799999999999999875 22 2445555655543 34457999999822
Q ss_pred cccc-----------------cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIW-----------------DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~-----------------~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+.- .-+.+.+++...++|||||++.+..++
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 1111 122345788889999999999999774
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=94.66 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=71.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----CCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----LPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-----l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..++.... ...++++|+++.+++.|+++. .++.+...|... ++++++||+|+++--...
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 6899999999999999998752 367999999999999988752 134555555422 334578999999622110
Q ss_pred ------cc-------------------ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 293 ------WD-------------------KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 293 ------~~-------------------~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.. +....++.++.++|+|||++++..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 00 112357888889999999999964
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=101.60 Aligned_cols=116 Identities=22% Similarity=0.173 Sum_probs=83.6
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~ 273 (372)
.+...+...++ .+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|+..
T Consensus 243 l~~~~l~~~~g--------~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~ 314 (434)
T PRK14901 243 LVAPLLDPQPG--------EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRN 314 (434)
T ss_pred HHHHHhCCCCc--------CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhh
Confidence 44445554444 7899999999999999988632335799999999999877654 553 5666667766
Q ss_pred CC----CCCCCccEEEec------ccccccccc----------------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 274 LP----YPSLSFDMVHCA------QCGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 274 lp----~~~~sFDlV~~~------~~~~~~~~~----------------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++ +..++||.|++. +.+.+. ++ ...+|.++.++|||||+++.++.....
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~-p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRH-PDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccC-cchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 65 446789999963 121111 11 346799999999999999999876544
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=99.51 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=81.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCC-CCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYP-SLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~-~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ +.++.+...|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 5899999999999999887532 35789999999999988865 44566666665443332 457999999732111
Q ss_pred cc--------------------cc----HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCe
Q 017377 293 WD--------------------KK----EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 293 ~~--------------------~~----~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw 348 (372)
-. ++ ...++.++.+.|+|||.+++..... .-+.+.++.++.+|
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-------------Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-------------QGAAVRGVLAENGF 398 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-------------HHHHHHHHHHHCCC
Confidence 00 01 1246677788999999998865421 12345666666677
Q ss_pred eEE
Q 017377 349 SLI 351 (372)
Q Consensus 349 ~~~ 351 (372)
..+
T Consensus 399 ~~v 401 (423)
T PRK14966 399 SGV 401 (423)
T ss_pred cEE
Confidence 544
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-09 Score=94.43 Aligned_cols=112 Identities=20% Similarity=0.111 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
......+.+.+...++ .+|||||||+|.+++.|+........++++|..+..++.|+++ ++ ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4456677788887777 8999999999999999998733445688999999999998876 44 456666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.|...-.-....||.|++..+.... + ..+.+.|++||++++-...
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~i---p----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEI---P----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEESS
T ss_pred cchhhccccCCCcCEEEEeeccchH---H----HHHHHhcCCCcEEEEEEcc
Confidence 6654332245689999998664322 2 3467789999999987654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=104.19 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=76.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEec----c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCA----Q 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~----~ 288 (372)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+. +.+...|+..++ ++++||+|++. .
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTG 330 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCC
Confidence 7899999999999988887532335799999999999877654 554 456666666654 56789999952 1
Q ss_pred ccc-------cccc----------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGI-------IWDK----------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~-------~~~~----------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
... .|.. ....+|.++.++|||||++++++.....
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 111 1111 1235899999999999999999886654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=89.80 Aligned_cols=106 Identities=14% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLP 275 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp 275 (372)
.+.+.+....+ .+|||||||+|.++..+++++ ..++++|+++.+++.++++.. ++.+...|+..++
T Consensus 4 ~i~~~~~~~~~--------~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~ 72 (169)
T smart00650 4 KIVRAANLRPG--------DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD 72 (169)
T ss_pred HHHHhcCCCCc--------CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC
Confidence 45555554444 689999999999999999873 468999999999999887632 4667777888888
Q ss_pred CCCCCccEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeC
Q 017377 276 YPSLSFDMVHCAQCGIIWDKKEGIFLIEADR--LLKPGGYFVLTSP 319 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~~~~~~~L~el~r--vLkPGG~lvis~p 319 (372)
+++..||.|+++-- ++... ..+..+.. .+.++|.+++..-
T Consensus 73 ~~~~~~d~vi~n~P-y~~~~---~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 73 LPKLQPYKVVGNLP-YNIST---PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ccccCCCEEEECCC-cccHH---HHHHHHHhcCCCcceEEEEEEHH
Confidence 88778999998743 44321 23333332 2458888888654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=94.97 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=73.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG- 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~- 290 (372)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 5899999999999999998743 35799999999999988875 443 5555555433 4455589999996110
Q ss_pred -----------ccccc------------cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 -----------IIWDK------------KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 -----------~~~~~------------~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.++.+ ....++.++.++|+|||++++....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 11101 2335788899999999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=101.67 Aligned_cols=103 Identities=31% Similarity=0.330 Sum_probs=70.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------------CCeEEEEeeccC------CC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------------LPAMIGNFISRQ------LP 275 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------------l~~~~~~~d~~~------lp 275 (372)
..+|||+|||-|.-.......+ ...++|+|++...|+.|++|- ..+.+...|... ++
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 3799999999888666666654 356899999999999998873 123344444322 22
Q ss_pred CCCCCccEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 276 YPSLSFDMVHCAQCGIIWDKKE---GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~~~~---~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.....||+|-|-+++|+..+.. ..+|..+...|+|||+|+.+.|..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2235999999999876665443 358999999999999999988753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-07 Score=83.81 Aligned_cols=107 Identities=20% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~ 273 (372)
.....+...++ ..++|||||+|+.+..++..+ ....++++|-++.+++..+++ +++ +.+...++..
T Consensus 25 l~ls~L~~~~g--------~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 25 LTLSKLRPRPG--------DRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HHHHhhCCCCC--------CEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 44556666666 799999999999999999444 457899999999999776654 544 3444444332
Q ss_pred -CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 274 -lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++-. .+||.|+...+ .+...+|..+...|||||.+++....
T Consensus 96 ~L~~~-~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 96 ALPDL-PSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hhcCC-CCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 2211 27999999866 34456899999999999999998763
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=95.87 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=76.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEec----c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCA----Q 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~----~ 288 (372)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ ++. +.+...|...++...+.||.|++. .
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 7899999999999999887632334699999999999877654 543 455556666665555679999963 1
Q ss_pred c-cc--------cccc--------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 C-GI--------IWDK--------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~-~~--------~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. .. .+.+ ....+|.++.++|||||+++.++.....
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 11 1111 1235899999999999999999876544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-08 Score=93.75 Aligned_cols=102 Identities=18% Similarity=0.089 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----------CCeEEEEeeccC-CCCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------LPAMIGNFISRQ-LPYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----------l~~~~~~~d~~~-lp~~~~sFDlV 284 (372)
.+++|||||||.|.++..++++. ....|+++|+++.+++.|++.- ..+.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35799999999999999998762 3357899999999999998741 123444444433 23346789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .++... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98632 233222 24578999999999999998644
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=89.68 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=93.9
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHH----HHHHcCCCeE--EEEeeccCC--CC------CCCCccEE
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ----LALERGLPAM--IGNFISRQL--PY------PSLSFDMV 284 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~----~A~~rgl~~~--~~~~d~~~l--p~------~~~sFDlV 284 (372)
+|||||||||..+.+++.+-+ .....+.|.++.... .+.+.+++.. ...+|...- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999998743 366788888887753 2333344321 112233333 33 35699999
Q ss_pred Eecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc---------------hhhHHHHHHHHHHHhcCe
Q 017377 285 HCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR---------------KNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 285 ~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~---------------e~~~~w~~i~~l~~~lcw 348 (372)
+|.++++.+. .....++..+.++|+|||.|++.+|.... ..++.. .-....+.+..++...+.
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9998865554 33346899999999999999999986554 111111 112234567888888888
Q ss_pred eEEeee-----cceEEEEe
Q 017377 349 SLIAQQ-----DETFIWQK 362 (372)
Q Consensus 349 ~~~~~~-----~~~~iw~K 362 (372)
++.... +...||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 876542 45677776
|
The function of this family is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=96.89 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=72.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 579999999999999998874 236799999999999988765 442 5555555432 33456899999972100
Q ss_pred ------------cccc------------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 ------------IWDK------------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ------------~~~~------------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++.+ ....++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1100 113578899999999999998754
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=91.71 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-C-----CCeEEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-G-----LPAMIGN 268 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-g-----l~~~~~~ 268 (372)
.|.+.+...+...+ .+++|||||||.|.++..++... ....++++|+++.+++.|++. + ..+.+..
T Consensus 52 ~y~~~m~~~l~~~~-------~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~ 123 (262)
T PRK04457 52 AYTRAMMGFLLFNP-------RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIE 123 (262)
T ss_pred HHHHHHHHHHhcCC-------CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45555554443222 34789999999999999998774 346799999999999999876 2 1244555
Q ss_pred eeccC-CCCCCCCccEEEecccc-ccccc--cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQ-LPYPSLSFDMVHCAQCG-IIWDK--KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~-lp~~~~sFDlV~~~~~~-~~~~~--~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.|... ++-..++||+|++...- ..... ....++.++.++|+|||.+++...
T Consensus 124 ~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 124 ADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 55432 22224689999986210 11111 124699999999999999999754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=99.77 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=78.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC-CCCCCccEEEec----
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVHCA---- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp-~~~~sFDlV~~~---- 287 (372)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|+..++ +.+++||.|++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 7899999999999999988632346799999999999887755 554 456666766665 456789999963
Q ss_pred -cccccccc----------------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 -QCGIIWDK----------------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 -~~~~~~~~----------------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.....-.+ ....+|.++.++|||||++++++.....
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 11111011 1235789999999999999999987654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=93.22 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=76.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
...++||||+|.|..+..|+..- ..|++.|.|..|...-+++|..+.- ..+..-.+..||+|.|.+++-. .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~----~~~w~~~~~~fDvIscLNvLDR-c~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLD----IDDWQQTDFKFDVISCLNVLDR-CD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEe----hhhhhccCCceEEEeehhhhhc-cC
Confidence 34689999999999999998752 3478889999999999999986542 2223323568999999877544 48
Q ss_pred cHHHHHHHHHhcccCCeEEEEEe
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+|..+|++|++.|+|+|.++++.
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEE
Confidence 88889999999999999999865
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=92.44 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+.++|+|||+|.|.++..++++.+. ..++..|. +..++.+++ .-.+.+...|.. -++|. +|+|+..+++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 3478999999999999999988654 56788998 778888887 445777777776 67776 999999999999975
Q ss_pred cH-HHHHHHHHhcccCC--eEEEEEeCCCCC
Q 017377 296 KE-GIFLIEADRLLKPG--GYFVLTSPESKP 323 (372)
Q Consensus 296 ~~-~~~L~el~rvLkPG--G~lvis~p~~~~ 323 (372)
+. ..+|+++++.|+|| |.++|.+...+.
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 44 47899999999999 999999876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=93.37 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------------CCCeEEEEeeccC-CCCCCCCcc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------------GLPAMIGNFISRQ-LPYPSLSFD 282 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------------gl~~~~~~~d~~~-lp~~~~sFD 282 (372)
.+++||+||||+|..+..+++.. ....|+.+|+++.+++.|++. ...+.+...|+.. ++-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45799999999999988888763 346799999999999999962 1234444444443 333457899
Q ss_pred EEEecccccccc-----ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 283 MVHCAQCGIIWD-----KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 283 lV~~~~~~~~~~-----~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+|++... .... -....++..+.+.|+|||.+++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998732 1111 1113588999999999999988744
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=93.65 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=74.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~- 296 (372)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++...+.+...|+..+. .+++||+|+++-.+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 5899999999999988877632 25799999999999999887545666666766654 34689999998665553211
Q ss_pred ------------------HHHHHHHHHhcccCCeEEEEE
Q 017377 297 ------------------EGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 297 ------------------~~~~L~el~rvLkPGG~lvis 317 (372)
...++.....+|+|+|.+.+.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 134667788899999977765
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=99.83 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=80.7
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeecc
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISR 272 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~ 272 (372)
..+...+...++ .+|||+|||+|..+..+++.......++++|+++.+++.++++ |+. +.+...|..
T Consensus 240 ~lv~~~l~~~~g--------~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 311 (444)
T PRK14902 240 MLVAPALDPKGG--------DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR 311 (444)
T ss_pred HHHHHHhCCCCC--------CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 344555554444 7899999999999999988632335799999999999887764 543 455556665
Q ss_pred CCC--CCCCCccEEEeccc------ccc-----ccc---c-------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 273 QLP--YPSLSFDMVHCAQC------GII-----WDK---K-------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 273 ~lp--~~~~sFDlV~~~~~------~~~-----~~~---~-------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++ ++ ++||+|++.-- +.+ |.. + ...+|.++.++|||||.+++++.....
T Consensus 312 ~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 312 KVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred cccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 543 33 78999997421 000 100 0 134799999999999999998765433
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=88.83 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=68.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccC-CCC-CCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQ-LPY-PSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~-lp~-~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++- ....+...|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999998763 2356899999999999888651 112344444432 221 13579999997321110
Q ss_pred ------c---------------cc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 ------D---------------KK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ------~---------------~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
. .+ ...++..+.++|+|||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 12567778899999999999865
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=92.59 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=86.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+++|||||.|.....|...++ ..++-+|.|..|++.++.. ++.....+.|.+.++|.+++||+|+++.+ .||.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhhh
Confidence 5799999999999999999875 4577789999999988754 44455667788999999999999999965 8898
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+...-+.+++..|||+|.|+-+......
T Consensus 151 NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 77777889999999999999977655443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=86.30 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|..++.|++.. ..|+.+|..+...+.|+++ |. ++.+.+.
T Consensus 59 ~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 59 HMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred HHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 355577778888777 899999999999999999874 2688899999999999875 55 3555555
Q ss_pred eccCCCCC-CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 270 ISRQLPYP-SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 270 d~~~lp~~-~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.. ..++ ...||.|+.+.+.-..+ ..+.+-|+|||.+++-.-
T Consensus 128 DG~-~G~~~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 128 DGS-KGWPEEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred Ccc-cCCCCCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 433 2333 37899999986644432 235678999999998765
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.2e-08 Score=89.10 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=69.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC--ceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL--MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD- 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~--~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~- 294 (372)
.+|||+|||+|.++..++.+.. ....|+++|+++.+++.|+++...+.+...|....++ +++||+|++|--.....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 6899999999999998887521 2357999999999999999876556666667665554 56899999983222110
Q ss_pred ----------ccHHHHHHHHHhcccCCeE
Q 017377 295 ----------KKEGIFLIEADRLLKPGGY 313 (372)
Q Consensus 295 ----------~~~~~~L~el~rvLkPGG~ 313 (372)
.-...++....++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1123477888887777775
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=97.58 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=69.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+|+--.+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 589999999999999988763 235799999999999998876 432 3444444322 24456899999962111
Q ss_pred c-------------c--------ccc----HHHHHHHHHhcccCCeEEEEEe
Q 017377 292 I-------------W--------DKK----EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~-------------~--------~~~----~~~~L~el~rvLkPGG~lvis~ 318 (372)
. + ..+ ...++.++.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 0 011 1236778899999999999864
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-07 Score=83.51 Aligned_cols=130 Identities=19% Similarity=0.104 Sum_probs=83.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCC----------------CeEEEEeeccCCCCCC-C
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGL----------------PAMIGNFISRQLPYPS-L 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl----------------~~~~~~~d~~~lp~~~-~ 279 (372)
.+||..|||.|.-...|+++| ..|+|+|+|+..++.+. ++++ .+.+.+.|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 689999999999999999987 56999999999999884 4433 1234555665554333 4
Q ss_pred CccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC-CCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP-RGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~-~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+||+|+=..++..++++. ....+.+.++|+|||.+++.+..... ....|+... .-++++.+.. -.|++..-
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v--~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSV--TEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS------HHHHHHHHT-TTEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCC--CHHHHHHHhc-CCcEEEEE
Confidence 799999776666665444 57899999999999994443332222 122333332 2244555544 45665543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-08 Score=87.57 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=87.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-----eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-----~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
+..++||.|+|-|..+..++-..+ -.|..+|..+..++.|++.-.. ..+.+...+++..+.++||+|++-.|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 347899999999999998876644 4467789999999999964221 334445566665456799999999999
Q ss_pred cccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCC-Ccc--hhhHHHHHHHHHHHhcCeeEEeee
Q 017377 291 IIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSS-SSR--KNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 291 ~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~-~~~--e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.|.+++ .-.+|+.+...|+|||.+++-+......... ... .....-+.+..+.++.+.+++...
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 999744 3579999999999999999876544331100 000 011123456677788899988766
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=88.67 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccCC--CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQL--PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~l--p~~~~sFDlV 284 (372)
.+++||+||||.|.++..++++ .....++.+|+++.+++.|++.- ..+.+...|+... ..++++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3589999999999999999877 34467889999999999998752 1244454454221 1235789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .++... ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98632 332221 23589999999999999987643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=90.46 Aligned_cols=104 Identities=25% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----------CCeEEEEeec------cCCCCCCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----------LPAMIGNFIS------RQLPYPSL 279 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-----------l~~~~~~~d~------~~lp~~~~ 279 (372)
+..++|+|||.|.-....-+.++ ..++|+|+.+..|+.|++|- .++.+..+|. ..+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 36799999999987766666654 45789999999999998761 1345555543 23556666
Q ss_pred CccEEEeccccccccc---cHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 280 SFDMVHCAQCGIIWDK---KEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~---~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+||+|-|-+++|.--+ ..+.+|.++.+.|+|||+|+-+.|...
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 7999999988543222 234689999999999999999988643
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.7e-07 Score=83.90 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeecc
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISR 272 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~ 272 (372)
.|...+.+.++ .+|||.|.|+|.++++|+..-.....++.+|+.+...+.|+++ ++. +.+...|..
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 56667777777 8999999999999999996533446788999999999999987 332 445555665
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+.-+++ .||+|+.- + ++|-.++..++.+|+|||.+++-.|..+.
T Consensus 157 ~~~~~~-~vDav~LD-----m-p~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 157 EGIDEE-DVDAVFLD-----L-PDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cccccc-ccCEEEEc-----C-CChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 555554 89999864 3 56667999999999999999999997644
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-08 Score=88.47 Aligned_cols=101 Identities=26% Similarity=0.237 Sum_probs=80.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCC-CeEEEEeeccCCC---CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGL-PAMIGNFISRQLP---YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl-~~~~~~~d~~~lp---~~~~sFDlV~~~~~ 289 (372)
..+||||||.|.+...+|.+++. ..+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|..++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999999866 5799999998887554 45588 7888777765432 45669999999876
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.|+... ..+++.+.++|+|||.+.+.+-.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6665321 25899999999999999998653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=96.34 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------------CCeEEEEeeccC-CCCCCCCcc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------------LPAMIGNFISRQ-LPYPSLSFD 282 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------------l~~~~~~~d~~~-lp~~~~sFD 282 (372)
++++|||||||+|..+..++++. ...+++.+|+++.+++.|+++. ..+.+...|... +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 34789999999999999998763 3367999999999999999831 224445455443 222357899
Q ss_pred EEEecccccccccc-----HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 283 MVHCAQCGIIWDKK-----EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 283 lV~~~~~~~~~~~~-----~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+|++... .+..+. ...+++.+.+.|+|||.+++....
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999743 222221 135889999999999999997643
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-07 Score=85.94 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
++++|||||||+|.++..+++.. ....++++|+++.+++.|++.- ..+.+...|... +....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34799999999999999888764 2356899999999999888741 112333333221 112257899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+... .+.... ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8643 222221 24688999999999999998744
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=85.14 Aligned_cols=100 Identities=29% Similarity=0.380 Sum_probs=72.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC-CC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ-LP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~-lp--~~~~sFDlV~~~~~ 289 (372)
..+||||||.|.+...++...+. ..+.|+|+....+..|.++ +++ +.+...|+.. ++ ++++++|.|+.++-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 37999999999999999998754 6799999999988765543 654 5566666655 22 56799999998854
Q ss_pred ccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKK--------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~--------~~~~L~el~rvLkPGG~lvis~p 319 (372)
-.|+.. ...+|..+.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 445321 13589999999999999999854
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=84.02 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCCcH----HHHHHHhc----CCceeEEEEeeCCHHHHHHHHHc--------CC-----------------
Q 017377 216 GVQSVLDVGCGFGS----FGAHLVSL----KLMAVCVAVYEATGSQVQLALER--------GL----------------- 262 (372)
Q Consensus 216 ~~~~VLDIGCG~G~----~~~~L~~~----~~~~~~v~gvD~s~~~v~~A~~r--------gl----------------- 262 (372)
.+-+|+.+||++|. ++..+.+. ......|.|.|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999994 44444441 22258899999999999999752 11
Q ss_pred --------CeEEEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 263 --------PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 263 --------~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
.+.+...+..+.+.+.+.||+|+|.++++.+.++. ..++..+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 12344444444334567899999999999886443 4799999999999999999743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.1e-07 Score=84.71 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC-C-----CCCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL-P-----YPSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l-p-----~~~~sFDlV 284 (372)
+++|||||||+|..+..++..-.....++++|+++.+++.|+++ ++. +.+...++.+. + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 37899999999998888876533346799999999999988765 543 44444444331 1 124689999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .+....++..+.++|+|||.+++...
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 88632 13334688999999999999887543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-07 Score=91.82 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
...+.+.+.+...++ .+|||+|||+|.++..+++.. ..++++|+|+.+++.|+++ ++ ++.+...
T Consensus 284 ~l~~~vl~~l~~~~~--------~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~ 352 (443)
T PRK13168 284 KMVARALEWLDPQPG--------DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHA 352 (443)
T ss_pred HHHHHHHHHhcCCCC--------CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Confidence 445555555554443 689999999999999999874 4689999999999988864 44 3556655
Q ss_pred eccC----CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQ----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~----lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+.. +++.+++||+|+++--... ....+..+.+ ++|++.++++..+
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeCh
Confidence 5532 3455678999998632111 1235555555 6999999998643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.2e-07 Score=84.91 Aligned_cols=99 Identities=25% Similarity=0.253 Sum_probs=68.4
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+|||||||+|..+..++..... ..|+++|+|+.+++.|+++ ++ ..+......-+.--.++||+|+||--.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 6999999999999999988643 6799999999999988865 53 2222222211221234899999982111100
Q ss_pred --------------------cc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 --------------------KK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 --------------------~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+ ...++.++.+.|+|||.+++..-
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 01 12567889999999999998855
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=84.44 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-------eE----------EE-----------
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-------AM----------IG----------- 267 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-------~~----------~~----------- 267 (372)
.+..+|||||..|.++..+++.- ....+.|+|+++..|+.|++.--. +. ++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 34679999999999999999873 335689999999999999875110 00 00
Q ss_pred ----------------Eeecc-CCCCCCCCccEEEecc----ccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 268 ----------------NFISR-QLPYPSLSFDMVHCAQ----CGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 268 ----------------~~d~~-~lp~~~~sFDlV~~~~----~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
+++.. -+.+....||+|.|-. +-..|+++. ..++..+.++|.|||+|++.--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 00000 1123456899999952 222344433 4799999999999999998743
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=76.25 Aligned_cols=120 Identities=18% Similarity=0.063 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR 272 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~ 272 (372)
..-..+.|+..+....+ .-|||+|.|||.++..++++++...+++.++.|++.+....++-..+.+.++|+.
T Consensus 33 Ss~lA~~M~s~I~pesg--------lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~ 104 (194)
T COG3963 33 SSILARKMASVIDPESG--------LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAF 104 (194)
T ss_pred cHHHHHHHHhccCcccC--------CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchh
Confidence 34456666666665554 6899999999999999999999989999999999999888887666666666665
Q ss_pred CCC-----CCCCCccEEEeccccccccccHH-HHHHHHHhcccCCeEEEEEeCC
Q 017377 273 QLP-----YPSLSFDMVHCAQCGIIWDKKEG-IFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 273 ~lp-----~~~~sFDlV~~~~~~~~~~~~~~-~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+. +.+..||.|+|.--+..++.... ++|+++...|++||.++-....
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 554 67788999999865555543333 5889999999999999987665
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=77.66 Aligned_cols=131 Identities=19% Similarity=0.129 Sum_probs=70.1
Q ss_pred CcccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C
Q 017377 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G 261 (372)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g 261 (372)
+...+++..-..+.+.+...... ........+|||+|||+|..+..++... ....|+..|.++ .++..+.+ +
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~--~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEF--NPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp ------HHHHHHHHHHH---------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred cEEEechHHHHHHHHHHhccccc--chhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 34556666555555555321000 0111134799999999999999988872 335678889988 76655543 2
Q ss_pred ----CCeEEEEeeccC-C---CCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 262 ----LPAMIGNFISRQ-L---PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 262 ----l~~~~~~~d~~~-l---p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+.+..++=.+ . ....+.||+|+++.+++.- .....++.-+.++|+|+|.++++.+..
T Consensus 93 ~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 93 SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccccCcEEEecCcccccccccccCCEEEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 112233222111 1 1234689999999987764 666678999999999999988887643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=85.07 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=67.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCC-CCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPY-PSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~-~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.+ ..++|+|+++.+++.|+++ +++ +.+...|+..+.. ..+.||+|+++--..
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 789999999999999999864 4689999999999988754 553 5666666655432 345799999873211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ...+.++..-++|++.++++..+.
T Consensus 252 G~----~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 252 GI----GKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred Cc----cHHHHHHHHHcCCCeEEEEECCcc
Confidence 11 112333344478888888776543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=82.96 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred CeEEEeCCCCcH----HHHHHHhcC---CceeEEEEeeCCHHHHHHHHHc--------CCC-------------------
Q 017377 218 QSVLDVGCGFGS----FGAHLVSLK---LMAVCVAVYEATGSQVQLALER--------GLP------------------- 263 (372)
Q Consensus 218 ~~VLDIGCG~G~----~~~~L~~~~---~~~~~v~gvD~s~~~v~~A~~r--------gl~------------------- 263 (372)
-+|+..||.+|. ++..+.+.. .....|+|+|+|+.+++.|++- +++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999994 344444431 1246799999999999988753 111
Q ss_pred ---------eEEEEeeccCCCCC-CCCccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 017377 264 ---------AMIGNFISRQLPYP-SLSFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 264 ---------~~~~~~d~~~lp~~-~~sFDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~ 318 (372)
+.+...+....+++ .+.||+|+|.++++++.++ ...++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 12233333333443 5789999999998888543 4579999999999999988764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-06 Score=85.64 Aligned_cols=100 Identities=18% Similarity=0.115 Sum_probs=69.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCCC----CCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLP----YPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~lp----~~~~sFDlV~~ 286 (372)
.+|||+|||+|.++..++..+ ...++++|+|+.+++.|+++ ++. +.+...|+...- -..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 689999999999998776554 24789999999999988765 553 455555554321 13468999999
Q ss_pred cccccccc--------ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWD--------KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~--------~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.--.+.-. .....++....++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 73211111 1122345567899999999998764
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.6e-07 Score=84.77 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~ 271 (372)
....+.+.+.+....+ .+|||||||+|.++..+++++. .++++|+++.|++.++++. ..+.+...|.
T Consensus 28 ~~i~~~i~~~l~~~~~--------~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~ 96 (272)
T PRK00274 28 ENILDKIVDAAGPQPG--------DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDA 96 (272)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChh
Confidence 3456677776665554 7899999999999999999853 6899999999999998753 3466777777
Q ss_pred cCCCCCCCCccEEEecc
Q 017377 272 RQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~ 288 (372)
..+++++-.+|.|+++-
T Consensus 97 ~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 97 LKVDLSELQPLKVVANL 113 (272)
T ss_pred hcCCHHHcCcceEEEeC
Confidence 77776643368888873
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-06 Score=76.85 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcc-CCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEE
Q 017377 193 VKDYSRQIAEMIGL-GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMI 266 (372)
Q Consensus 193 ~~~~~~~l~~~l~~-~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~ 266 (372)
.+...+.+.+.+.. ..+ .+|||+|||+|.++..++.++. ..++++|.++.+++.++++ ++ ++.+
T Consensus 37 ~d~v~e~l~~~l~~~~~~--------~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVD--------ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARV 106 (199)
T ss_pred CHHHHHHHHHHHhhhcCC--------CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEE
Confidence 34445555555532 222 6899999999999987666653 5799999999999887764 43 2455
Q ss_pred EEeeccC-CCCCCCCccEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeCC
Q 017377 267 GNFISRQ-LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADR--LLKPGGYFVLTSPE 320 (372)
Q Consensus 267 ~~~d~~~-lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~r--vLkPGG~lvis~p~ 320 (372)
...|... ++...++||+|+++-- +.. .-...++..+.. +|+|+|.++++...
T Consensus 107 ~~~D~~~~l~~~~~~fDlV~~DPP-y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 107 VNTNALSFLAQPGTPHNVVFVDPP-FRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEchHHHHHhhcCCCceEEEECCC-CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 5555433 2223457999999843 111 112234454444 48999999998664
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=69.62 Aligned_cols=101 Identities=29% Similarity=0.312 Sum_probs=71.3
Q ss_pred EEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--C---eEEEEeeccC--CCCCC-CCccEEEeccccc
Q 017377 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P---AMIGNFISRQ--LPYPS-LSFDMVHCAQCGI 291 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~---~~~~~~d~~~--lp~~~-~sFDlV~~~~~~~ 291 (372)
++|+|||+|... .+.........++++|.++.++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333332221357779999999987555431 1 2344444444 77877 589999 665656
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 6544 667999999999999999998876544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.4e-07 Score=94.74 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=72.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC-CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL-PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l-p~~~~sFDlV~~~~~ 289 (372)
++|||+|||+|.++..++..+. ..|+++|+|+.+++.|+++ ++. +.+...|..+. .-..++||+|++.--
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 6899999999999999998753 3589999999999988875 443 45555554331 111468999999621
Q ss_pred ccc----------ccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GII----------WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~----------~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+. ...+...++..+.++|+|||.++++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 111 0122345788889999999999887653
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-06 Score=78.43 Aligned_cols=128 Identities=23% Similarity=0.230 Sum_probs=87.4
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeec
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFIS 271 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~ 271 (372)
..|...+.+.++ .+|||.|.|+|+++.+|+..-.....+..+|.++...+.|+++ |+. +.+...|.
T Consensus 30 ~~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 30 SYILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred HHHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 356677788887 8999999999999999997522345688899999999998875 553 56666676
Q ss_pred cCCCCC---CCCccEEEeccccccccccHHHHHHHHHhcc-cCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 017377 272 RQLPYP---SLSFDMVHCAQCGIIWDKKEGIFLIEADRLL-KPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (372)
Q Consensus 272 ~~lp~~---~~sFDlV~~~~~~~~~~~~~~~~L~el~rvL-kPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lc 347 (372)
....|+ +..||.|+.- + ++|-.++..+.++| +|||.+++-.|.. .+.....+.+ +..+
T Consensus 102 ~~~g~~~~~~~~~DavfLD-----l-p~Pw~~i~~~~~~L~~~gG~i~~fsP~i-----------eQv~~~~~~L-~~~g 163 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLD-----L-PDPWEAIPHAKRALKKPGGRICCFSPCI-----------EQVQKTVEAL-REHG 163 (247)
T ss_dssp GCG--STT-TTSEEEEEEE-----S-SSGGGGHHHHHHHE-EEEEEEEEEESSH-----------HHHHHHHHHH-HHTT
T ss_pred ecccccccccCcccEEEEe-----C-CCHHHHHHHHHHHHhcCCceEEEECCCH-----------HHHHHHHHHH-HHCC
Confidence 554443 3679999864 2 44445899999999 9999999999954 3334444455 4456
Q ss_pred eeEE
Q 017377 348 WSLI 351 (372)
Q Consensus 348 w~~~ 351 (372)
|..+
T Consensus 164 f~~i 167 (247)
T PF08704_consen 164 FTDI 167 (247)
T ss_dssp EEEE
T ss_pred Ceee
Confidence 6554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=81.44 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.++++- -++.+...|
T Consensus 15 ~~~~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D 83 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--------DPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEec
Confidence 4566777777665554 789999999999999999884 36899999999999988762 235666777
Q ss_pred ccCCCCCCCCccEEEeccc
Q 017377 271 SRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~ 289 (372)
...++++ .||.|+++-.
T Consensus 84 ~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred cccCCch--hceEEEEcCC
Confidence 7777765 4899999844
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-06 Score=76.53 Aligned_cols=122 Identities=19% Similarity=0.114 Sum_probs=74.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeE-EEEeeccCC-----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAM-IGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~-~~~~d~~~l-----p~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.|+..+++.+. ..++++|+++.|+.........+. +...+...+ +..-..||+++++..
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~-- 152 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI-- 152 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH--
Confidence 6899999999999999999853 568999999988876444433322 222222222 212236776666532
Q ss_pred cccccHHHHHHHHHhcccCCeEEEE-EeCCCCCC----CC-C---CcchhhHHHHHHHHHHHhcCeeEE
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVL-TSPESKPR----GS-S---SSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvi-s~p~~~~~----~~-~---~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
+ +|..+.+.|+| |.+++ .-|..... .. . ....+...-+.+..++...+|+..
T Consensus 153 -~------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 153 -S------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred -h------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 57889999999 66654 33433221 01 0 112233445555666677788765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=71.59 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=64.0
Q ss_pred CeEEEeCCCCcH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|||||||+|. ++..|++.| ..|+++|+++..++.|++++..+...+.-..++.+ -+.+|+|.+.+. +.+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~-y~~a~liysirp----p~e 89 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI-YKNAKLIYSIRP----PRD 89 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH-HhcCCEEEEeCC----CHH
Confidence 689999999996 888888776 46899999999999999998877776543222222 256999998754 233
Q ss_pred HHHHHHHHHhcccCCeEEEEEe
Q 017377 297 EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~ 318 (372)
....+.++.+-+. .-++|..
T Consensus 90 l~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 90 LQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHcC--CCEEEEc
Confidence 3445555555443 4455543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-06 Score=76.66 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE--EE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM--IG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~--~~ 267 (372)
+.+.+.+.+.+..... .....+||+|||+|..+..++..-. ...++++|.|+.++..|.++ ++..+ +.
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4556666655543221 1224799999999999999887643 57799999999999888876 33322 22
Q ss_pred Eeec-----cCCCCCCCCccEEEecccccccc-------------------------ccHHHHHHHHHhcccCCeEEEEE
Q 017377 268 NFIS-----RQLPYPSLSFDMVHCAQCGIIWD-------------------------KKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 268 ~~d~-----~~lp~~~~sFDlV~~~~~~~~~~-------------------------~~~~~~L~el~rvLkPGG~lvis 317 (372)
+.++ ...+...+.+|+++||--.+.-. +....++.-..|.|+|||.+++.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 2211 22345578999999982211100 01113455678999999999998
Q ss_pred eCCC
Q 017377 318 SPES 321 (372)
Q Consensus 318 ~p~~ 321 (372)
....
T Consensus 285 ~~~~ 288 (328)
T KOG2904|consen 285 LVER 288 (328)
T ss_pred eccc
Confidence 7744
|
|
| >cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-08 Score=81.48 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|++.+|+-|||+.|++...|..||||.|++.|+.++..|+.+..-|. +++++..
T Consensus 5 ~eva~~~gvs~~tlR~ye~~Gll~~~r~~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~ 65 (102)
T cd04789 5 SELAEKAGISRSTLLYYEKLGLITGTRNANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA 65 (102)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 447899999999999999999999889999999999999999999999988888 5666655
|
Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-06 Score=81.45 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~ 268 (372)
.++.+.+.+......+ ..|||==||||++..... ..+..+.|.|++..|++-|+.+ ++. ..+..
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEag---l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAG---LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhh---hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 3566677776666666 789999999999876654 3456789999999999998876 333 32333
Q ss_pred e-eccCCCCCCCCccEEEecc--cc---cccc---ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 F-ISRQLPYPSLSFDMVHCAQ--CG---IIWD---KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~-d~~~lp~~~~sFDlV~~~~--~~---~~~~---~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. |+..+|+++++||.|++-- +. .... +-...+|..+.++|++||++++..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4 8999999999999999941 10 1111 1124689999999999999999988
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.6e-06 Score=77.43 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+....+ .+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+...|
T Consensus 15 ~~i~~~i~~~~~~~~~--------~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D 83 (253)
T TIGR00755 15 ESVIQKIVEAANVLEG--------DVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGD 83 (253)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECc
Confidence 4456667776665544 7899999999999999998863 3899999999999888652 345667777
Q ss_pred ccCCCCCCCCcc---EEEecc
Q 017377 271 SRQLPYPSLSFD---MVHCAQ 288 (372)
Q Consensus 271 ~~~lp~~~~sFD---lV~~~~ 288 (372)
+..++++ +|| +|+++-
T Consensus 84 ~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 84 ALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred hhcCChh--HcCCcceEEEcC
Confidence 7777765 566 777763
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=76.59 Aligned_cols=100 Identities=21% Similarity=0.191 Sum_probs=73.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-----CCCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-----YPSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-----~~~~sFDlV 284 (372)
+++|||||+++|..+..++..-.....++.+|.++...+.|++. |+. +.+...++.+ ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 47899999999999999997644456799999999999988754 543 4555554432 11 124689999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+.-.. ..+...++..+.++|+|||.+++....
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 98632 244456888899999999999987543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.6e-06 Score=90.80 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=69.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-----------------CeEEEEeeccCCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-----------------PAMIGNFISRQLPY 276 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-----------------~~~~~~~d~~~lp~ 276 (372)
.+|||+|||+|..+..+++.... ..++++|+|+.+++.|+++ ++ .+.+...|.... +
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 58999999999999999987532 5799999999999988755 11 244555554332 2
Q ss_pred CC--CCccEEEeccccc--------------c-----------c----c----ccH----HHHHHHHHhcccCCeEEEEE
Q 017377 277 PS--LSFDMVHCAQCGI--------------I-----------W----D----KKE----GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 277 ~~--~sFDlV~~~~~~~--------------~-----------~----~----~~~----~~~L~el~rvLkPGG~lvis 317 (372)
.+ ..||+|++|--.+ + . . ++. ..++.+..++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999972111 0 0 0 111 35678888999999999987
Q ss_pred eC
Q 017377 318 SP 319 (372)
Q Consensus 318 ~p 319 (372)
.-
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 54
|
|
| >cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-08 Score=79.66 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|+|.+|+-|||+.|++...|..||||.|++.|+.++..|..+...|. +++++..
T Consensus 5 ~eva~~~gvs~~tLR~ye~~Gll~~~r~~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~ 65 (102)
T cd04775 5 GQMSRKFGVSRSTLLYYESIGLIPSARSEANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG 65 (102)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 457899999999999999999998888899999999999999999999988888 5666654
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.2e-06 Score=77.29 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-C----CCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-Y----PSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-~----~~~sFDlV 284 (372)
+++|||||+|+|..+..++..-.....++.+|.++...+.|++. |+. +.+...++.+ ++ + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 47999999999999999987532345689999999999888764 553 4444444322 21 1 23689999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.-.. ..+...++..+.++|+|||.+++...
T Consensus 199 FIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 199 FVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 97532 23345688899999999999888644
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.2e-06 Score=82.69 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=66.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC----CCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ----LPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~----lp~~~~sFDlV~~~~ 288 (372)
.+|||+|||+|.++..+++.. ..++++|+++.+++.|+++ ++ ++.+...|... +++.+++||+|++.-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 689999999999999998763 3689999999999988864 44 35555555543 234456899999763
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..... ...++..+.+ ++|++.++++..
T Consensus 371 Pr~G~---~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKGC---AAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCCCC---CHHHHHHHHh-cCCCEEEEEcCC
Confidence 21111 1235665554 889998888743
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.23 E-value=9e-06 Score=80.95 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp-~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++..+ ..++++|+++.+++.|+++ ++ ++.+...|..... -..++||+|++.--.-
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 689999999999999999764 4689999999999988765 44 3556666654322 1124699999873211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. ...++..+. .++|++.++++..
T Consensus 312 G~---~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---cHHHHHHHH-hcCCCeEEEEEeC
Confidence 11 123455554 4799999998864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=75.88 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCeEEEeCCCCc----HHHHHHHhcCC----ceeEEEEeeCCHHHHHHHHHc---------CCC----------------
Q 017377 217 VQSVLDVGCGFG----SFGAHLVSLKL----MAVCVAVYEATGSQVQLALER---------GLP---------------- 263 (372)
Q Consensus 217 ~~~VLDIGCG~G----~~~~~L~~~~~----~~~~v~gvD~s~~~v~~A~~r---------gl~---------------- 263 (372)
+-+|.-+||++| +.+..|.+... ....|+|.|++...++.|+.- +++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 468999999999 45555555543 258899999999999988642 221
Q ss_pred ---------eEEEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 264 ---------AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 264 ---------~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
+.+...+....++..+.||+|+|-++++.+.... ..++..++..|+|||+|++-..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 1111222222232457799999999988886443 4799999999999999999643
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=73.89 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE--EEE-eeccC-CC-CCCCCccEEEe
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM--IGN-FISRQ-LP-YPSLSFDMVHC 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~--~~~-~d~~~-lp-~~~~sFDlV~~ 286 (372)
++++|||||.+.|..+..|+..-.....++.+|.++++.+.|+++ |+... ... +++.+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 347899999999999999998744346799999999999999876 55432 222 22211 11 45689999997
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-. ...+...++..+.++|+|||.+++....
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 52 2333446999999999999999986543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-05 Score=74.34 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCC--e
Q 017377 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP--A 264 (372)
Q Consensus 192 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~--~ 264 (372)
+...|+..+.+.+..............+|||||||+|.....|+.+.. ...++|+|+++.+++.|+++ ++. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 345788888777754221111122346899999999988777776532 46799999999999988864 232 2
Q ss_pred EEE-EeeccCC----CCCCCCccEEEeccc
Q 017377 265 MIG-NFISRQL----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 265 ~~~-~~d~~~l----p~~~~sFDlV~~~~~ 289 (372)
.+. ..+...+ ..+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 221 1111111 124678999999954
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.6e-06 Score=73.69 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=67.6
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc---CC------------CeEEEEeeccCCCCCCCCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER---GL------------PAMIGNFISRQLPYPSLSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r---gl------------~~~~~~~d~~~lp~~~~sF 281 (372)
.+.||+|.|+|.++..++.. +......+|+|..++.|+.++++ .+ ...+...|....--+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 78999999999998887743 33334448999999999988765 11 1234455555555567889
Q ss_pred cEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 282 DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 282 DlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.|||.... ....+++...|+|||.+++-..
T Consensus 164 DaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 164 DAIHVGAAA-------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEccCc-------cccHHHHHHhhccCCeEEEeec
Confidence 999997331 1245677788999999988654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-06 Score=79.78 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=66.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---HHHHHcCCCeE--EEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALERGLPAM--IGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~~A~~rgl~~~--~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.++|||||||+|.++...++.|. ..+.++|.|.-+. +.++.+++... +.....+++.+|-+..|+|++...-+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 37899999999999999998873 5688899876551 33444565532 33334444455578899999964322
Q ss_pred cc--cccHHHHHHHHHhcccCCeEEE
Q 017377 292 IW--DKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 292 ~~--~~~~~~~L~el~rvLkPGG~lv 315 (372)
.. ..-...+|-.=++-|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22 1222346666788999999987
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.9e-06 Score=85.94 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=76.5
Q ss_pred cCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCC-eEEEEeeccCC--CCCCCCccEEEec
Q 017377 215 AGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLP-AMIGNFISRQL--PYPSLSFDMVHCA 287 (372)
Q Consensus 215 ~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~-~~~~~~d~~~l--p~~~~sFDlV~~~ 287 (372)
.+...+||||||.|.|...++..++. ..+.|+|++...+..+.. .++. +.+...++..+ -++++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 34578999999999999999998755 668999999987765543 3554 33433343222 2788999999998
Q ss_pred cccccccccH--------HHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKE--------GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p 319 (372)
+. -.|+... ..+|..+.++|+|||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 65 5664221 2589999999999999999854
|
|
| >cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-07 Score=81.61 Aligned_cols=62 Identities=18% Similarity=0.033 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
+.=||.++|+|.+|+.|||+.|++.. .|..||||.|+++|+.+|..|..+...|. +++++..
T Consensus 4 I~evA~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~ 66 (172)
T cd04790 4 ISQLARQFGLSRSTLLYYERIGLLSPSARSESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS 66 (172)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 34588999999999999999999985 67899999999999999999999999998 6777776
|
Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=70.81 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=52.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----CCeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
++|+|+|||||.++...+-.|. ..|+++|+++.+++.++++- -.+.+...|..+. ...||.|++|
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 7899999999999988877764 56899999999999988762 2566776666655 4668999987
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=71.74 Aligned_cols=100 Identities=26% Similarity=0.251 Sum_probs=65.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCce--------eEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMA--------VCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDM 283 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~--------~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDl 283 (372)
..|||--||+|++....+..+... ..+.|.|+++.+++.|+++ ++. +.+...|+..+++.++++|.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 689999999999986665442222 2478999999999988876 443 56777788999988899999
Q ss_pred EEeccccc-ccc--ccH----HHHHHHHHhcccCCeEEEEE
Q 017377 284 VHCAQCGI-IWD--KKE----GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 284 V~~~~~~~-~~~--~~~----~~~L~el~rvLkPGG~lvis 317 (372)
|+++--.- -.. .+. ..++.++.++|++...++++
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99972100 001 111 25689999999994444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=77.21 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C--CCeEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G--LPAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g--l~~~~~ 267 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + -++.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~--------~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPT--------DTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4566677777666555 789999999999999999874 3589999999999988764 2 235566
Q ss_pred EeeccCCCCCCCCccEEEecc
Q 017377 268 NFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~ 288 (372)
..|+...++ ..||+|+++-
T Consensus 91 ~~Dal~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVANV 109 (294)
T ss_pred ECCHhhhcc--cccCEEEecC
Confidence 666655554 4689999873
|
|
| >cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.7e-07 Score=74.66 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=||.+.|+|..|+=|||+.|++...|..||||.|++.++.++..|..|...|. ++++..
T Consensus 4 ~eva~~~gvs~~tlR~Ye~~GLl~p~r~~~g~R~Y~~~~~~~l~~I~~lr~~G~---sl~eI~ 63 (112)
T cd01282 4 GELAARTGVSVRSLRYYEEQGLLVPERSANGYRDYDEAAVDRVRQIRRLLAAGL---TLEEIR 63 (112)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347889999999999999999999899999999999999999999999998877 454444
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.7e-07 Score=76.45 Aligned_cols=61 Identities=11% Similarity=-0.086 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccc-cchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIY-SSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=+|.++|+|..|+-|||+.|++...|-. ||||.|++.++.++..|+.+...|. ++++...
T Consensus 4 gE~A~~~gvs~~TLRyYE~~GLl~p~r~~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (133)
T cd04787 4 KELANAAGVTPDTVRFYTRIGLLRPTRDPVNGYRLYSEKDLSRLRFILSARQLGF---SLKDIKE 65 (133)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 34788999999999999999999887776 9999999999999999999999888 5666443
|
Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-05 Score=74.93 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||.||+|.|..+..+++.. ....++.+|+++.+++.|++.. ..+.+...|... +...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45789999999999999888763 2356899999999999998752 123333333322 233457899999
Q ss_pred ecccccccc---c---cHHHHHH-HHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIWD---K---KEGIFLI-EADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~~---~---~~~~~L~-el~rvLkPGG~lvis~p 319 (372)
+-. .-.+. . ....+++ .+.+.|+|||.+++...
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 862 12211 0 1234777 89999999999987643
|
|
| >cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.4e-07 Score=75.71 Aligned_cols=55 Identities=9% Similarity=-0.131 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTR 82 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 82 (372)
.=||.++|++..|+=|||+.|++...|..||||+|+++|+.++..|..++..|..
T Consensus 5 ~EvA~~~Gvs~~tLRyYE~~GLl~p~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~s 59 (139)
T cd01110 5 GEVAKRSGVAVSALHFYEQKGLIASWRNAGNQRRYPRDVLRRIAFIKVAQRLGLS 59 (139)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeEECHHHHHHHHHHHHHHHcCCC
Confidence 4478999999999999999999998999999999999999999999999988883
|
Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=79.98 Aligned_cols=97 Identities=26% Similarity=0.286 Sum_probs=65.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcC---CceeEEEEeeCCHHHHHHH----HHcCC--CeEEEEeeccCCCCCCCCccEEEec
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLA----LERGL--PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~---~~~~~v~gvD~s~~~v~~A----~~rgl--~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
...|||||||+|.+....++.+ .....|.+++-++.++... +.++. .+.+...+++++..|. .+|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 3679999999999987666543 1346799999998776443 33444 4778888888887764 89999996
Q ss_pred ccccccc--ccHHHHHHHHHhcccCCeEEE
Q 017377 288 QCGIIWD--KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 288 ~~~~~~~--~~~~~~L~el~rvLkPGG~lv 315 (372)
-.- .+. +-....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 321 222 222357888999999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=69.18 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=90.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---HHHHHcC--C-Ce----------------------E---
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALERG--L-PA----------------------M--- 265 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~~A~~rg--l-~~----------------------~--- 265 (372)
..+||=-|||.|.++-.++.+|+ .+.|.|.|--|+ ++..... . .. .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 46899999999999999999864 578999999886 2332210 0 00 0
Q ss_pred --------------EEEeeccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC-
Q 017377 266 --------------IGNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS- 327 (372)
Q Consensus 266 --------------~~~~d~~~lp~~~---~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~- 327 (372)
...+|...+..++ ++||.|++.+ ++.-..+.-..|..|.++|||||+++=.+|.-.+-...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0001111111123 6999999874 35544666789999999999999888777765542221
Q ss_pred --CcchhhHHHHHHHHHHHhcCeeEEeeec
Q 017377 328 --SSRKNKSLLKVMEEFTEKICWSLIAQQD 355 (372)
Q Consensus 328 --~~~e~~~~w~~i~~l~~~lcw~~~~~~~ 355 (372)
.....+-.|+++..+++.++|+.+.++.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0011344589999999999999987663
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-06 Score=70.49 Aligned_cols=60 Identities=13% Similarity=-0.067 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcccccccceeccCCCCc-cccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPD-IYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=||.++|++..|+-|||+.|++...+ -.||||.|++.|+.++..|+.+..-|. ++++-.
T Consensus 4 ~eva~~~gvs~~tLRyye~~Gll~p~~~~~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~~I~ 64 (96)
T cd04768 4 GEFAKLAGVSIRTLRHYDDIGLFKPAKIAENGYRYYSYAQLYQLQFILFLRELGF---SLAEIK 64 (96)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347899999999999999999998754 589999999999999999999998888 454444
|
Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.8e-06 Score=78.97 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=77.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~- 296 (372)
..++|+|||.|-.+.. + ....+.|.|.+...+..++..+.. .....|+..+|+.+.+||.+++..+++|+...
T Consensus 47 sv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred ceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 5799999999965321 2 224578999999999888877764 33445788999999999999999888887533
Q ss_pred -HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 -EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 -~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...+++|+.|+|||||...+.......
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 346999999999999998877665544
|
|
| >TIGR01950 SoxR redox-sensitive transcriptional activator SoxR | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-06 Score=75.34 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=||.++|++..|+=|||+.|++...|-.||||+|+++|+.++..|..+..-|.
T Consensus 5 gevA~~~Gvs~~tLRyYE~~GLl~~~r~~~g~R~Y~~~di~~l~~I~~lr~~G~ 58 (142)
T TIGR01950 5 GELAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRRVAVIKAAQRVGI 58 (142)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCccCCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 447899999999999999999999889999999999999999999999988887
|
SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.5e-05 Score=76.31 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=74.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC-CCCCCccEEE----ec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVH----CA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp-~~~~sFDlV~----~~ 287 (372)
.+|||++||.|.=+..+++.-.....+++.|+++.-++..+++ |+. +.+.+.|...++ ...+.||.|+ |+
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 7899999999999999988632335689999999888766544 665 345555555442 3346799999 55
Q ss_pred cc---------ccccccc--------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QC---------GIIWDKK--------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~---------~~~~~~~--------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.. ...|..+ ...+|....++|||||+++.++.....
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 22 1112111 135788999999999999999987655
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.8e-05 Score=72.97 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-C-----CCCCccE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-Y-----PSLSFDM 283 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-~-----~~~sFDl 283 (372)
+++|||||+++|..+..++..-.....++.+|.++...+.|++. |+. +.+...++.+ ++ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 47899999999999999987533456799999999999888754 543 3444443322 12 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 284 V~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|+.-.- ......++..+.++|+|||.+++..
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 997632 2333457888889999999988753
|
|
| >cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-06 Score=73.36 Aligned_cols=60 Identities=15% Similarity=-0.017 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=+|-++|+|..|+=|||+.|++. ..|..||||.|+++|+.++..|..+..-|. ++++..
T Consensus 4 gevA~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (127)
T cd04784 4 GELAKKTGCSVETIRYYEKEGLLPAPARSANNYRLYDEEHLERLLFIRRCRSLDM---SLDEIR 64 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347889999999999999999997 567889999999999999999998888788 455444
|
Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-06 Score=72.93 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|++..|+-|||+.|++. ..|..||||.|+++++.++..|..+..-|.
T Consensus 4 ~e~a~~~gvs~~tlRyYe~~GLl~~~~r~~~g~R~Y~~~~~~~l~~I~~lr~~G~ 58 (127)
T cd01108 4 GEAAKLTGLSAKMIRYYEEIGLIPPPSRSDNGYRVYNQRDIEELRFIRRARDLGF 58 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCC
Confidence 347889999999999999999997 678889999999999999999999988888
|
Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=78.97 Aligned_cols=99 Identities=23% Similarity=0.220 Sum_probs=78.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..++|+|||.|....++... ....++|+|.++.++..+.+. ++. ..+...+....||++++||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 47899999999999888765 345678899999888666543 222 2234556778899999999999998877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|. ++...++.|++|+++|||+++....
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeHHH
Confidence 77 7777899999999999999997543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.9e-05 Score=69.60 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-------CeEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-------PAMI 266 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-------~~~~ 266 (372)
+.+.+.+++.-..+.. ...+|||...|-|.+++..+++|. ..|..++.++..++.|.-+.. .+.+
T Consensus 118 dP~~Dt~~Kv~~V~~~------~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKVK------RGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheeccc------cCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 4555555554433331 237999999999999999999975 246667888888888875521 1233
Q ss_pred EEeeccCC--CCCCCCccEEEeccccccc--cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHH
Q 017377 267 GNFISRQL--PYPSLSFDMVHCAQCGIIW--DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEF 342 (372)
Q Consensus 267 ~~~d~~~l--p~~~~sFDlV~~~~~~~~~--~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l 342 (372)
..+|+.+. .|+|.+||+|+----.+.. .-.-..+.+|++|+|||||.++--+-++..+.+ . ......+..-
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr----G-~d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR----G-LDLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc----c-CChhHHHHHH
Confidence 33344332 4789999999753111111 112246889999999999999987765554222 1 1112233444
Q ss_pred HHhcCeeEEee
Q 017377 343 TEKICWSLIAQ 353 (372)
Q Consensus 343 ~~~lcw~~~~~ 353 (372)
..+.+|..+.+
T Consensus 265 Lr~vGF~~v~~ 275 (287)
T COG2521 265 LRRVGFEVVKK 275 (287)
T ss_pred HHhcCceeeee
Confidence 47778886544
|
|
| >TIGR02044 CueR Cu(I)-responsive transcriptional regulator | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.8e-06 Score=72.78 Aligned_cols=54 Identities=13% Similarity=-0.040 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|+|..|+=|||+.|++.. .|..||||.|++.++.++..|..+..-|.
T Consensus 4 ~e~a~~~gvs~~tlRyYe~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (127)
T TIGR02044 4 GQVAKLTGLSSKMIRYYEEKGLIPPPLRSEGGYRTYTQQHLDELRLISRARQVGF 58 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 3478899999999999999999976 57889999999999999999999988887
|
This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.4e-06 Score=71.68 Aligned_cols=134 Identities=18% Similarity=0.303 Sum_probs=89.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-CCC----eE-EEEe----eccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLP----AM-IGNF----ISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-gl~----~~-~~~~----d~~~lp~~~~sFDlV~~~ 287 (372)
+.|||+|.|.-.++..|........+|...|-++..++-.++- ..+ .. ...+ ...+......+||+|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 6899999997666666655555667788889999888655432 111 00 0000 111222345699999999
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee-cceEEEEec
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ-DETFIWQKT 363 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~-~~~~iw~K~ 363 (372)
.|++ +.+....+++.++++|+|.|..++..|-... ..+.+.++++..++...... -+..|||+.
T Consensus 111 DClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 111 DCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------SLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred cchh-HHHHHHHHHHHHHHHhCcccceeEecCcccc-----------hHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 9954 4455567889999999999999998884332 34455666677777777654 345677764
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=69.64 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEE----EEeeccCCCCCCCCccEEEecc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMI----GNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~----~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
.+++|||+|||+|...-.+.+.-.....++.+|.|+.|++.++.. ...... ...-....++. ..|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 457999999999986655554322446788999999999887653 111110 00101122332 339999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++....+.. ..+++.+...+.+ +|+|.+|+...
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 988886522 2466666666655 99999987654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6e-05 Score=73.02 Aligned_cols=102 Identities=20% Similarity=0.103 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-CCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+....+|+|.|.|..+..++..- . .+.+++...+.+-.+...- ..+.....|+.+- .|.+ |+|++-.+++||+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCC
Confidence 35789999999999999999853 2 2677888888876555443 3333333333333 3433 6999999999997
Q ss_pred ccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 295 KKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 295 ~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++. ..+|++++..|+|||.+++.+...+.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 443 57999999999999999999875443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=67.18 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC---CCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY---PSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~---~~~sFDlV~~~~~~~~~~ 294 (372)
-++|||||=+...... .. ....|+.||+++. ...+...+ ....|. +++.||+|.|+.++-.+
T Consensus 53 lrlLEVGals~~N~~s--~~--~~fdvt~IDLns~--------~~~I~qqD--Fm~rplp~~~~e~FdvIs~SLVLNfV- 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TS--GWFDVTRIDLNSQ--------HPGILQQD--FMERPLPKNESEKFDVISLSLVLNFV- 117 (219)
T ss_pred ceEEeecccCCCCccc--cc--CceeeEEeecCCC--------CCCceeec--cccCCCCCCcccceeEEEEEEEEeeC-
Confidence 5899999975543222 12 2356899999752 22333443 334444 46799999999775555
Q ss_pred ccH---HHHHHHHHhcccCCeE-----EEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecc----eEEEEe
Q 017377 295 KKE---GIFLIEADRLLKPGGY-----FVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDE----TFIWQK 362 (372)
Q Consensus 295 ~~~---~~~L~el~rvLkPGG~-----lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~----~~iw~K 362 (372)
+++ +.++..+.+.|+|+|. |+++.|.+-..+. ..-..+.+..+.+.+++..+..+.. -..|+|
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-----Ry~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-----RYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-----cccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 433 4799999999999999 9999886543211 1111234566778899998876533 246777
Q ss_pred cCC
Q 017377 363 TVD 365 (372)
Q Consensus 363 ~~~ 365 (372)
...
T Consensus 193 ~~~ 195 (219)
T PF11968_consen 193 SGK 195 (219)
T ss_pred cCC
Confidence 544
|
|
| >cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-06 Score=70.34 Aligned_cols=54 Identities=13% Similarity=-0.055 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|++..|+=|||+.|++.. .|..||||.|++.|+.++..|..+...|.
T Consensus 4 ge~A~~~gvs~~tlR~ye~~GLl~p~~r~~~g~R~Y~~~~l~~l~~I~~lr~~G~ 58 (107)
T cd01111 4 SQLALDAGVSVHIVRDYLLRGLLHPVARTEGGYGLFDDCALQRLRFVRAAFEAGI 58 (107)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC
Confidence 3478899999999999999999976 68889999999999999999999887777
|
Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs, |
| >cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-06 Score=68.96 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=53.1
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=||.++|++..|+=|||+.|++.. .|..||||.|++.|+.++..|..+..-|. ++++...
T Consensus 5 eva~~~gvs~~tlR~ye~~Gll~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~eI~~ 65 (96)
T cd04788 5 ELARRTGLSVRTLHHYDHIGLLSPSQRTEGGHRLYDRADIRRLHQIIALRRLGF---SLREIGR 65 (96)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478899999999999999999976 57789999999999999999999988888 5666554
|
Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.5e-06 Score=68.50 Aligned_cols=61 Identities=11% Similarity=-0.085 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCC-ccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|++..|+=|||+.|++... |-.||||.|+++|+.++..|..+..-|. ++++...
T Consensus 4 ~eva~~~gvs~~tlR~ye~~Gll~p~~~~~~gyR~Y~~~~~~~l~~I~~lr~~G~---~l~eI~~ 65 (97)
T cd04782 4 GEFAKLCGISKQTLFHYDKIGLFKPEIVKENGYRYYTLEQFEQLDIILLLKELGI---SLKEIKD 65 (97)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 34789999999999999999999764 6679999999999999999999988888 4555443
|
Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-06 Score=71.38 Aligned_cols=56 Identities=13% Similarity=-0.140 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRP 83 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~ 83 (372)
.=+|.++|++..|+-|||+.|++...+-.||||.|+++++.++..|..+..-|...
T Consensus 4 gevA~~~gvs~~tlRyYe~~GLl~p~~~~~gyR~Y~~~~l~~l~~I~~lr~~G~~L 59 (120)
T cd04781 4 AEVARQSGLPASTLRYYEEKGLIASIGRRGLRRQYDPQVLDRLALIALGRAAGFSL 59 (120)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCCCH
Confidence 34789999999999999999999987667899999999999999999988877743
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an |
| >PRK10227 DNA-binding transcriptional regulator CueR; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-06 Score=72.53 Aligned_cols=54 Identities=20% Similarity=0.025 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=||.++|++..|+=|||+.|++.. .|..||||.|++.++.++..|..+..-|.
T Consensus 4 ge~a~~~gvs~~tlRyYE~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (135)
T PRK10227 4 SDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHCCC
Confidence 3478899999999999999999975 67889999999999999999999876666
|
|
| >COG0789 SoxR Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-06 Score=70.97 Aligned_cols=62 Identities=15% Similarity=-0.027 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccc-cchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIY-SSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
+.-||.++|++..|+=|||+.|++...+.. ||||.|+++|++++..|..+..-|. +++++..
T Consensus 3 I~eva~~~gvs~~tLRyYE~~GLl~p~~~~~~gyR~Ys~~dl~~l~~I~~~r~~G~---~L~~I~~ 65 (124)
T COG0789 3 IGEVAKLTGVSVRTLRFYERKGLLSPERRDEGGYRYYTPEDLELLQIIKTLRELGF---SLAEIKE 65 (124)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCCCCCcccCCCCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 456899999999999999999999876555 8999999999999999999886566 6777765
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=62.62 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCCeEEEEeeccCCCCCCCCccEEEeccccc-
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGI- 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~- 291 (372)
+..+||||||+|..+..|++.........+.|+++.+.+. |+.++..+.....|... .+..++.|+++-+--..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcCc
Confidence 4679999999999999999874344556789999998865 44455544333333211 12337788877762211
Q ss_pred -------------ccc--cc----HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 292 -------------IWD--KK----EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 292 -------------~~~--~~----~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.|. .+ .++++..+..+|.|.|.+++.....+.
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 121 11 235677888999999999998775443
|
|
| >cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.2e-06 Score=70.76 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=+|.++|++..|+=|||+.|++. ..|-.||||.|+++++.++..|..+..-|. ++++..
T Consensus 4 ~eva~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~---sl~eI~ 64 (123)
T cd04770 4 GELAKAAGVSPDTIRYYERIGLLPPPQRSENGYRLYGEADLARLRFIRRAQALGF---SLAEIR 64 (123)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 347889999999999999999998 678889999999999999999999988888 455444
|
Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=73.17 Aligned_cols=96 Identities=25% Similarity=0.236 Sum_probs=69.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||++||+|.++..++.... ...|+++|+++.+++.++++ ++. ..+...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 5799999999999999987532 24689999999999988764 444 3345455543221146799999862
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+..++....+.+++||+++++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 1 2223477787788999999999944
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00027 Score=66.97 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCc-eeEEEEeeCCHHHHHH----HHHcCCC--eEEEEeeccCC---CCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQL----ALERGLP--AMIGNFISRQL---PYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~-~~~v~gvD~s~~~v~~----A~~rgl~--~~~~~~d~~~l---p~~~~sFDlV~ 285 (372)
.+-+||||.||.|....-.+..... ..++.-.|.|+..|+. ++++|+. +.+.+.|+.+. .--+-..|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4568999999999987766665433 4578889999999865 4566776 35666665432 11234579999
Q ss_pred eccccccccccH--HHHHHHHHhcccCCeEEEEEeCCCCCCCCC---Ccchh---------hHHHHHHHHHHHhcCeeEE
Q 017377 286 CAQCGIIWDKKE--GIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKN---------KSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 286 ~~~~~~~~~~~~--~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~~e~---------~~~w~~i~~l~~~lcw~~~ 351 (372)
.++...-+.++. ...|.-+.+.+.|||+++.+..+-.+.-.+ ..+.| +....+|..+.+..+++..
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 997655554433 246888999999999999998654441100 00011 1224567777777777655
Q ss_pred ee
Q 017377 352 AQ 353 (372)
Q Consensus 352 ~~ 353 (372)
..
T Consensus 295 ~q 296 (311)
T PF12147_consen 295 DQ 296 (311)
T ss_pred hh
Confidence 43
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-06 Score=73.58 Aligned_cols=57 Identities=11% Similarity=-0.131 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 25 CFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.+.=+|-++|++..|+-|||+.|+|...|..||||+|++.++.+|..|..+..-|.
T Consensus 12 ~~IgevAk~~gvs~~TlRyYE~~GLi~~~r~~~g~R~Y~~~~i~~L~~I~~lr~lG~ 68 (154)
T PRK15002 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGI 68 (154)
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCCCCCccCCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 456668999999999999999999999999999999999999999999999988888
|
|
| >TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-06 Score=70.78 Aligned_cols=55 Identities=9% Similarity=-0.082 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTR 82 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 82 (372)
.=||.++|+|..|+-|||+.|++.. .|-.||||.|++.++.++..|..+..-|..
T Consensus 4 ~e~a~~~gvs~~tlR~Ye~~GLl~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~lG~s 59 (127)
T TIGR02047 4 GELAQKTGVSVETIRFYEKQGLLPPPARTDNNYRVYTVGHVERLAFIRNCRTLDMS 59 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHcCCC
Confidence 3478899999999999999999974 678899999999999999999999888883
|
This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix. |
| >PRK13752 putative transcriptional regulator MerR; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.6e-06 Score=72.48 Aligned_cols=63 Identities=16% Similarity=0.030 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 25 CFLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.+.=||.++|+|-.|+=|||+.|++.. .|-.||||.|++.++.++..|..+..-|. ++++..
T Consensus 8 ~~IgevAk~~Gvs~~TLRyYE~~GLl~p~~r~~~gyR~Y~~~~l~rl~~I~~lr~~G~---sL~eI~ 71 (144)
T PRK13752 8 LTIGVFAKAAGVNVETIRFYQRKGLLPEPDKPYGSIRRYGEADVTRVRFVKSAQRLGF---SLDEIA 71 (144)
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 4566789999999999999999999974 67789999999999999999999998888 555544
|
|
| >cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-06 Score=70.66 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTR 82 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 82 (372)
=+|.++|+|..|+=|||+.|++. ..|..||||.|++.++.++..|..+...|..
T Consensus 5 e~a~~~gvs~~tlR~Ye~~GLl~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~s 59 (126)
T cd04783 5 ELAKAAGVNVETIRYYQRRGLLPEPPRPEGGYRRYPEETVTRLRFIKRAQELGFT 59 (126)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCCC
Confidence 47889999999999999999998 7888999999999999999999999888883
|
Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00049 Score=65.05 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---------CeEEEEeeccCCCCCCCCccEEEe
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---------PAMIGNFISRQLPYPSLSFDMVHC 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---------~~~~~~~d~~~lp~~~~sFDlV~~ 286 (372)
.+++||=||.|.|..++.++++. ..++.+|+++..++.+++.-. .+.+... . ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h--hhccCCcCCEEEE
Confidence 56899999999999999999884 278999999999999987321 2222211 1 1112478999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.. ....+.+.++|.|+|||.++...-.
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCC
Confidence 632 2234788999999999999997543
|
|
| >cd04774 HTH_YfmP Helix-Turn-Helix DNA binding domain of the YfmP transcription regulator | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.6e-06 Score=67.46 Aligned_cols=53 Identities=17% Similarity=-0.036 Sum_probs=49.3
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~ 81 (372)
=+|..+|++.+|+-||++.|++...|..||||.|++.|+.++..|..|.. .|.
T Consensus 5 e~a~~~gvs~~tLR~ye~~Gll~p~r~~~g~R~Y~~~dv~~l~~I~~L~~~~G~ 58 (96)
T cd04774 5 EVAKRLGLTKRTLKYYEEIGLVSPERSEGRYRLYSEEDLKRLERILRLREVLGF 58 (96)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCEEECHHHHHHHHHHHHHHHHcCC
Confidence 47889999999999999999999889999999999999999999999988 666
|
Helix-turn-helix (HTH) transcription regulator, YfmP, and related proteins; N-terminal domain. YfmP regulates the multidrug efflux protein, YfmO, and indirectly regulates the expression of the Bacillus subtilis copZA operon encoding a metallochaperone, CopZ, and a CPx-type ATPase efflux protein, CopA. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00052 Score=61.86 Aligned_cols=99 Identities=15% Similarity=0.034 Sum_probs=64.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-C-CC-CCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-Y-PS-LSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-~-~~-~sFDlV~~~ 287 (372)
.+|||++||+|.++..++.++. ..++++|.++.+++.++++ ++. +.+...|... +. + .. ..||+|+..
T Consensus 51 ~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 6899999999999999999975 3589999999999877764 443 3455555422 11 1 12 247877764
Q ss_pred cccccccccHHHHHHHH--HhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEA--DRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el--~rvLkPGG~lvis~p~ 320 (372)
-- +.. .....++..+ ..+|++||.+++....
T Consensus 129 PP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PP-FFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 21 111 1222334333 4579999998887653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.5e-06 Score=70.31 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=||.++|+|..|+=|||+.|++.. .|..||||.|+++++.++..|..+...|. ++++..
T Consensus 4 ~e~a~~~gvs~~tlR~Ye~~Gll~~~~r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (126)
T cd04785 4 GELARRTGVNVETIRYYESIGLLPEPARTAGGYRLYGAAHVERLRFIRRARDLGF---SLEEIR 64 (126)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 4478999999999999999999975 57789999999999999999999988888 444443
|
Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.8e-06 Score=70.04 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.+.=||...|++..|+=|||+.|++.. .|..||||.|++.++.+|..|..+...|. ++++..
T Consensus 5 tI~elA~~~gvs~~tlR~Ye~~GLL~p~~r~~~gyR~Y~~~~l~rL~~I~~lr~~G~---~L~eI~ 67 (120)
T TIGR02054 5 TISRLAEDAGVSVHVVRDYLLRGLLHPVRRTTSGYGIFDDASLQRLRFVRAAFEAGI---GLGELA 67 (120)
T ss_pred cHHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeeCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 355689999999999999999999985 57889999999999999999999999888 455544
|
This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon. |
| >cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.5e-06 Score=68.88 Aligned_cols=60 Identities=12% Similarity=-0.101 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcccccccceeccC-CCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSS-SKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=+|.+.|+|..|+-|||+.|++ ...|..||||.|+++++.++..|..+..-|. ++++-.
T Consensus 4 ~e~a~~~gvs~~tlr~ye~~gll~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (113)
T cd01109 4 KEVAEKTGLSADTLRYYEKEGLLPPVKRDENGIRDFTEEDLEWLEFIKCLRNTGM---SIKDIK 64 (113)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 34788999999999999999999 4578889999999999999999999887777 455443
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.2e-06 Score=70.95 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=51.8
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=||..+|++..|+-|||+.|++.. .|-.||||.|++.|+.++..|..+..-|. ++++...
T Consensus 5 e~a~~~gvs~~tLRyYE~~GLl~p~~r~~~gyR~Y~~~~v~~l~~I~~lr~~Gf---sL~eI~~ 65 (131)
T cd04786 5 ELAKRSGMAASRIRFYEAEGLLSSVERSANGYRDYPPETVWVLEIISSAQQAGF---SLDEIRQ 65 (131)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478899999999999999999975 56789999999999999999999888877 5555443
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su |
| >PRK13749 transcriptional regulator MerD; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.4e-06 Score=69.69 Aligned_cols=63 Identities=14% Similarity=-0.003 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.+.=||..+|+|-.|+=|||+.|++.. .|-.||||.|+++++.+|..|..+..-|. ++++...
T Consensus 5 tIgelA~~~gvS~~tiR~YE~~GLl~p~~r~~~gyR~Y~~~~l~rL~~I~~~r~~G~---sL~eI~~ 68 (121)
T PRK13749 5 TVSRLALDAGVSVHIVRDYLLRGLLRPVACTTGGYGLFDDAALQRLCFVRAAFEAGI---GLDALAR 68 (121)
T ss_pred cHHHHHHHHCCCHHHHHHHHHCCCCCCCCcCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 345688999999999999999999986 58889999999999999999998777777 5666654
|
|
| >cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.3e-06 Score=69.05 Aligned_cols=54 Identities=9% Similarity=-0.215 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.=||.++|+|..|+=|||+.|++...|.. |||.|++.++.++..|..+..-|.
T Consensus 3 Igeva~~~gvs~~tlRyYe~~GLl~p~r~~-gyR~Y~~~~l~~l~~I~~lr~~G~ 56 (118)
T cd04776 3 ISELAREFDVTPRTLRFYEDKGLLSPERRG-QTRVYSRRDRARLKLILRGKRLGF 56 (118)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCcCCC-CccccCHHHHHHHHHHHHHHHCCC
Confidence 345889999999999999999999987865 999999999999999999988888
|
Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. |
| >cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.9e-06 Score=70.78 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=+|.++|++..|+-||++.|++...|..+|||.|++.++.++..|..+..-|. ++++...
T Consensus 4 ~e~a~~~gvs~~TLR~Ye~~GLl~p~r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 64 (134)
T cd04779 4 GQLAHLAGVSKRTIDYYTNLGLLTPERSDSNYRYYDETALDRLQLIEHLKGQRL---SLAEIKD 64 (134)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCccCCCCCeeECHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 457899999999999999999999999999999999999999999999988888 5655543
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >TIGR02043 ZntR Zn(II)-responsive transcriptional regulator | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.4e-06 Score=70.29 Aligned_cols=55 Identities=11% Similarity=-0.065 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.=+|.+.|++..|+-|||+.|++.. .|-.||||.|++.|+.++..|..+..-|.
T Consensus 4 I~e~a~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 59 (131)
T TIGR02043 4 IGELAKLCGVTSDTLRFYEKNGLIKPAGRTDSGYRLYTDEDQKRLRFILKAKELGF 59 (131)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999986 57789999999999999999999888888
|
This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix. |
| >cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.6e-06 Score=67.64 Aligned_cols=60 Identities=12% Similarity=-0.171 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=+|.+.|+|..|+=|||+.|++.. +-.||||+|++.++.++..|..+..-|. ++++-..
T Consensus 4 ge~a~~~gvs~~tlRyYe~~GLl~p-~~~~g~r~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 63 (107)
T cd04777 4 GKFAKKNNITIDTVRHYIDLGLLIP-EKKGGQYFFDEKCQDDLEFILELKGLGF---SLIEIQK 63 (107)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCcCC-ccCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3478999999999999999999976 4468999999999999999999988888 5555543
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.3e-06 Score=66.05 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLG 79 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g 79 (372)
=+|.++|+|..|+=|||+.|++.. .|..||||.|++.|+.++..|..|..|
T Consensus 5 e~A~~~gvs~~tlR~Ye~~Gll~~~~r~~~g~R~Y~~~~v~~l~~I~~l~~g 56 (99)
T cd04772 5 DLARAIGLSPQTVRNYESLGLIPPAERTANGYRIYTDKHIAALRAYRALLPG 56 (99)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCCeecCHHHHHHHHHHHHHhhC
Confidence 378899999999999999999985 688999999999999999999998744
|
Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins. |
| >PRK09514 zntR zinc-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.2e-06 Score=70.77 Aligned_cols=61 Identities=15% Similarity=0.005 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.=+|.++|++..|+=|||+.|++.. .|..||||.|++.++.++..|..+..-|. ++++-.
T Consensus 4 I~e~a~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 65 (140)
T PRK09514 4 IGELAKLAEVTPDTLRFYEKQGLMDPEVRTEGGYRLYTEQDLQRLRFIRRAKQLGF---TLEEIR 65 (140)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCcccCCCCCeeeCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 34578999999999999999999986 57899999999999999999999988888 444444
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.5e-05 Score=71.69 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred eecCCCcccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 181 ~F~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.|-+ .++||--.+. ++.+.+.+... .|.+ .+.++||+|+|.|..+..++..- ..|.+.+.|..|....+.+
T Consensus 83 G~lg-rGsMFifSe~---QF~klL~i~~p-~w~~-~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLG-RGSMFIFSEE---QFRKLLVIGGP-AWGQ-EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccc-cCceEEecHH---HHHHHHhcCCC-ccCC-CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc
Confidence 4555 5567754444 44455544421 2332 44799999999999999887642 3367789999999999888
Q ss_pred CCCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccC-CeEEEEEe
Q 017377 261 GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKP-GGYFVLTS 318 (372)
Q Consensus 261 gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkP-GG~lvis~ 318 (372)
+.++.-.. +..-.+-.||+|.|-..+ .-..++..+|++++.+|+| .|..+++-
T Consensus 154 ~ynVl~~~----ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 154 NYNVLTEI----EWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CCceeeeh----hhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 87654321 111124469999997653 3347788899999999999 88888754
|
|
| >TIGR02051 MerR Hg(II)-responsive transcriptional regulator | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.4e-06 Score=69.19 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=51.6
Q ss_pred HHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
=+|.++|++..|+=|||+.|++. ..|..||||.|++.++.++..|..+..-|. ++++-.
T Consensus 4 e~a~~~gvs~~tlR~Ye~~GLl~~~~r~~~g~R~Y~~~~l~~l~~I~~l~~~G~---sl~eI~ 63 (124)
T TIGR02051 4 ELAKAAGVNVETIRYYERKGLLPEPDRPEGGYRRYPEETVKRLRFIKRAQELGF---SLEEIG 63 (124)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCEeECHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 37889999999999999999997 568889999999999999999999988888 444444
|
This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=67.37 Aligned_cols=102 Identities=19% Similarity=0.068 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC---------eEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP---------AMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~---------~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||-||-|.|.++..++++.. ...++.+|+++..++.|++.-.. +.+...|... +.-..++||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 457999999999999999999864 57789999999999999976221 1222222221 121234899999
Q ss_pred eccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~~~----~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+-.. -...+ ....+++.+++.|+++|.++...-
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 8632 22111 124689999999999999999843
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=69.27 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc------CCceeEEEEeeCCHHHHHHHHHc----CCC
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL------KLMAVCVAVYEATGSQVQLALER----GLP 263 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~------~~~~~~v~gvD~s~~~v~~A~~r----gl~ 263 (372)
....+.+.+++....+ .+|+|-.||+|.|...+.+. ......+.|+|+++.++..|+.+ +..
T Consensus 32 ~~i~~l~~~~~~~~~~--------~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKG--------DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT-TT--------EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcccc--------ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3456677777755444 68999999999998887762 12346799999999999887643 322
Q ss_pred e---EEEEeeccCCCCC--CCCccEEEecc--cccccc------------------ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 264 A---MIGNFISRQLPYP--SLSFDMVHCAQ--CGIIWD------------------KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 264 ~---~~~~~d~~~lp~~--~~sFDlV~~~~--~~~~~~------------------~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. .+...|....+.. .+.||+|+++- ....|. .....++..+.+.|++||.+++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1 2444443333322 47899999972 111010 011247788999999999999888
Q ss_pred CC
Q 017377 319 PE 320 (372)
Q Consensus 319 p~ 320 (372)
|.
T Consensus 184 p~ 185 (311)
T PF02384_consen 184 PN 185 (311)
T ss_dssp EH
T ss_pred cc
Confidence 74
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.8e-06 Score=68.47 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~c~~ 91 (372)
..-+|.++|++.+|+-||++.|++...|..+|||+|++.|+.++..|..|.. .|. +++....
T Consensus 4 i~e~A~~~gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~i~~L~~d~g~---~l~~i~~ 66 (91)
T cd04766 4 ISVAAELSGMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRRIQRLTQELGV---NLAGVKR 66 (91)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 4568999999999999999999999889899999999999999999999987 666 5666665
|
Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. |
| >cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.72 E-value=7e-06 Score=68.10 Aligned_cols=59 Identities=12% Similarity=-0.047 Sum_probs=50.5
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccc
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELD 87 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (372)
=+|.+.|+|..|+-|||+.|++...+..+|||.|++.|+.++..|..+..-|...++.+
T Consensus 5 e~a~~~gvs~~tLryYe~~GLi~p~~~~~~yR~Y~~~d~~~l~~I~~lr~~G~sl~eI~ 63 (116)
T cd04769 5 ELAQQTGVTIKAIRLYEEKGLLPSPKRSGNYRVYDAQHVECLRFIKEARQLGFTLAELK 63 (116)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCCCCCCceeeCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 36889999999999999999998765566999999999999999999988888544433
|
Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00019 Score=64.43 Aligned_cols=93 Identities=31% Similarity=0.372 Sum_probs=68.3
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCCC-eEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLP-AMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
+++|||+|.|.-|..|+-..+ ...++.+|....-+.+. .+.+++ +.+.+..++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 799999999998888876543 35688999998766543 344776 6666666666 556789999999744
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEe
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 344568888999999999988873
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=64.50 Aligned_cols=100 Identities=26% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-----eE-EEEee-ccC-CCCCCCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AM-IGNFI-SRQ-LPYPSLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-----~~-~~~~d-~~~-lp~~~~sFDlV~~~ 287 (372)
+..+|||+||++|.|+..+++++.....+.|+|+.+..-- .+.. +. ..... ... ++-..+.||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----QNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----cceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 3479999999999999999998755688999999865100 1110 10 01000 011 11123689999996
Q ss_pred ccccccc----ccH-------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWD----KKE-------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~----~~~-------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+ .... .+. ...+.-+...|+|||.+++-...
T Consensus 99 ~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 99 MA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 42 1111 111 12345556789999999988765
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.8e-06 Score=61.02 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=51.1
Q ss_pred HHHHHHHHhcccccccce-eccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccC
Q 017377 29 IVALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLC 89 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c 89 (372)
=+|.++|++.+|+-||++ .|++...|..+|||.|++.|+.++..|..|...|. +++++
T Consensus 5 e~A~~~gVs~~tlr~ye~~~gl~~~~r~~~g~R~yt~~di~~l~~i~~l~~~g~---~l~~i 63 (68)
T cd04763 5 EVALLTGIKPHVLRAWEREFGLLKPQRSDGGHRLFNDADIDRILEIKRWIDNGV---QVSKV 63 (68)
T ss_pred HHHHHHCcCHHHHHHHHHhcCCCCCCcCCCCCcccCHHHHHHHHHHHHHHHcCC---CHHHH
Confidence 478999999999999995 69998889999999999999999999999888777 55544
|
Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen |
| >cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.6e-06 Score=66.40 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcccccccceeccCCCCcc--ccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDI--YSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.+.|++.+|+=|||+.|++...+. .||||.|++.++.++..|..+..-|. ++++...
T Consensus 4 ~eva~~~gis~~tlR~ye~~GLi~p~~~~~~ngyR~Y~~~~i~~l~~I~~lr~~G~---sl~~i~~ 66 (108)
T cd01107 4 GEFAKLSNLSIKALRYYDKIGLLKPAYVDPDTGYRYYSAEQLERLNRIKYLRDLGF---PLEEIKE 66 (108)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCCCcCCCCCCccccCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3478999999999999999999988663 48999999999999999999988777 4555443
|
Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00033 Score=65.86 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.....++ .+|||||+|.|.+|..|++++. .++++++++.+++..+++. -+..+...|
T Consensus 16 ~~v~~kIv~~a~~~~~--------d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D 84 (259)
T COG0030 16 KNVIDKIVEAANISPG--------DNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGD 84 (259)
T ss_pred HHHHHHHHHhcCCCCC--------CeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence 4457777777766555 7899999999999999999853 4889999999999888773 345666778
Q ss_pred ccCCCCCCC-CccEEEec
Q 017377 271 SRQLPYPSL-SFDMVHCA 287 (372)
Q Consensus 271 ~~~lp~~~~-sFDlV~~~ 287 (372)
+-..++++. .++.|++|
T Consensus 85 aLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 85 ALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred hhcCcchhhcCCCEEEEc
Confidence 777777654 68999987
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00036 Score=65.37 Aligned_cols=83 Identities=24% Similarity=0.199 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CCC--eEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLP--AMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl~--~~~~~~ 269 (372)
...+++|.+..+.++. ..|||||.|||.++..|++.+ ..|+++++++.|+....++ |.+ ..+..+
T Consensus 44 p~v~~~I~~ka~~k~t--------D~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPT--------DVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCCC--------CEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 3456666666666655 899999999999999999986 4588899999999888877 444 222222
Q ss_pred eccCCCCCCCCccEEEec
Q 017377 270 ISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~ 287 (372)
....+..+.-.||.++++
T Consensus 113 ~gD~lK~d~P~fd~cVsN 130 (315)
T KOG0820|consen 113 HGDFLKTDLPRFDGCVSN 130 (315)
T ss_pred ecccccCCCcccceeecc
Confidence 222233333468999985
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=66.99 Aligned_cols=105 Identities=19% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--------------------cCC-----------C-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--------------------RGL-----------P- 263 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--------------------rgl-----------~- 263 (372)
++.++||||||+-.+-..-+.. ....|+..|.++..++..++ .|- .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3478999999996553222222 34568889999877653221 010 0
Q ss_pred -e-EEEEeeccC-CCCCC-----CCccEEEeccccccccccHH---HHHHHHHhcccCCeEEEEEeCCCC
Q 017377 264 -A-MIGNFISRQ-LPYPS-----LSFDMVHCAQCGIIWDKKEG---IFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 264 -~-~~~~~d~~~-lp~~~-----~sFDlV~~~~~~~~~~~~~~---~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+ .+...|..+ -|+.. ..||+|++.+|+.....+.. .+++++.++|||||+|++.+....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 1 122234333 23332 35999999999888776654 689999999999999999876443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=6e-06 Score=61.62 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
=+|.++|++.+|+-||++.|++...+..||||.|++.|+..+..|..|...|.
T Consensus 5 eva~~~gvs~~tlr~y~~~gll~~~~~~~g~r~y~~~dv~~l~~i~~l~~~G~ 57 (69)
T PF13411_consen 5 EVAKLLGVSPSTLRYYEREGLLPPPRDENGYRYYSEEDVERLREIKELRKQGM 57 (69)
T ss_dssp HHHHHTTTTHHHHHHHHHTTSSTTBESTTSSEEE-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCcCHHHHHHHHHhcCcccccccCceeeccHHHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999999999999999999999999887666
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=70.87 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=60.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC-C-------C---C----
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL-P-------Y---P---- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l-p-------~---~---- 277 (372)
.+|||++||+|.++..|++.. ..++++|+++.+++.|+++ ++ ++.+...|.... + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 359999999999999888763 3699999999999988875 44 345555554331 1 1 0
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 278 -SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 278 -~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...||+|+..--.-.+ ...++..+ ++|++.++++..
T Consensus 276 ~~~~~d~v~lDPPR~G~---~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGL---DPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCCCC---cHHHHHHH---HcCCcEEEEEcC
Confidence 1137988875221111 11244444 348888888855
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.2e-05 Score=65.95 Aligned_cols=54 Identities=17% Similarity=0.023 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcccccccceeccCCCCcc-ccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDI-YSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|+|..|+-|||+.|++...+- .||||+|++.|+.++..|..|..-|.
T Consensus 4 ~eva~~~gvs~~tlR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 58 (108)
T cd04773 4 GELAHLLGVPPSTLRHWEKEGLLSPDREPETGYRVYDPSDVRDARLIHLLRRGGY 58 (108)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCceeeCHHHHHHHHHHHHHHHCCC
Confidence 3478999999999999999999987664 59999999999999999999988777
|
Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins. |
| >cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.3e-05 Score=63.09 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccc-cchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIY-SSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
..=+|.++|++..|+=|||+.|++...|.. ||||+|++.|+..+..|..|...|. ++++...
T Consensus 4 i~evA~~~gvs~~tLR~ye~~Gll~p~r~~~~g~R~Ys~~dv~~l~~I~~Lr~~G~---sl~~i~~ 66 (88)
T cd01105 4 IGEVSKLTGVSPRQLRYWEEKGLIKSIRSDGGGQRKYSLADVDRLLVIKELLDEGF---TLAAAVE 66 (88)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCceecCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 345789999999999999999999887777 5999999999999999999998887 5554443
|
Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00081 Score=65.44 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=66.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcC---CceeEEEEeeCCHHHHHHHHHcCC----C-eEE--EEeeccC----CCC--CCCCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLALERGL----P-AMI--GNFISRQ----LPY--PSLSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~---~~~~~v~gvD~s~~~v~~A~~rgl----~-~~~--~~~d~~~----lp~--~~~sF 281 (372)
..++|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ ..++..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 479999999999877766541 123678999999999988776522 2 222 2222211 221 12346
Q ss_pred cEEEecc-cccccccc-HHHHHHHHHh-cccCCeEEEEEeCCC
Q 017377 282 DMVHCAQ-CGIIWDKK-EGIFLIEADR-LLKPGGYFVLTSPES 321 (372)
Q Consensus 282 DlV~~~~-~~~~~~~~-~~~~L~el~r-vLkPGG~lvis~p~~ 321 (372)
.+|+.-+ ++-++.++ ...+|+++.+ .|+|||.|+|..-..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 7776654 33344322 2368999999 999999999976443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >cd04780 HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=97.59 E-value=1.2e-05 Score=64.30 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=52.2
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccC-CCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSL-GTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~c~~ 91 (372)
=||.++|++..|+-||++.|++.. .|..||||.|++.++.++..|+.|.. .|. ++++...
T Consensus 5 eva~~~gvs~~tlR~Ye~~GLl~p~~r~~~g~r~Y~~~dv~~l~~I~~L~~~~G~---~l~~I~~ 66 (95)
T cd04780 5 ELSKRSGVSVATIKYYLREGLLPEGRRLAPNQAEYSEAHVERLRLIRALQQEGGL---PISQIKE 66 (95)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478999999999999999999986 67889999999999999999999975 567 5666665
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00037 Score=69.09 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC-C-CC-------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL-P-YP------------- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l-p-~~------------- 277 (372)
.+|||++||+|.++..++... ..++++|.++.+++.|+++ ++ ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999887653 3689999999999988865 45 345555554331 1 10
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 278 -SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 278 -~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...||+|+..--...+ ...++..+. +|++.++++..+
T Consensus 285 ~~~~~D~v~lDPPR~G~---~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL---DDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCCCCC---cHHHHHHHH---ccCCEEEEEeCH
Confidence 1258999875221111 123444443 378888888653
|
|
| >cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.56 E-value=3.2e-06 Score=68.01 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCCCCCccccCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTTRPKELDLCGK 91 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~c~~ 91 (372)
...-+|.++|++.+|+-||++.|++...|..+|||+|+++|+.++..|..|+. .|. ++++...
T Consensus 3 ~i~eva~~~gVs~~tLR~ye~~Gli~p~r~~~g~R~Ys~~dv~~l~~I~~L~~~~G~---~l~~i~~ 66 (98)
T cd01279 3 PISVAAELLGIHPQTLRVYDRLGLVSPARTNGGGRRYSNNDLELLRQVQRLSQDEGF---NLAGIKR 66 (98)
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeECHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 34568899999999999999999998888889999999999999999999988 677 5666665
|
Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00041 Score=69.89 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=80.2
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC----eEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP----AMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~----~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
++|-+|||.-.+...+.+.|+ .+|+.+|+|+-.++.+..++.. ..+...++..+.|++++||+|+--+.+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 799999999999999988876 4578899999999888877532 3466678889999999999999987766654
Q ss_pred ccHH---------HHHHHHHhcccCCeEEEEEeC
Q 017377 295 KKEG---------IFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~~~~---------~~L~el~rvLkPGG~lvis~p 319 (372)
.+.. ..+.++.|+|+|||.++..+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 3322 357899999999999887665
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=62.41 Aligned_cols=91 Identities=25% Similarity=0.189 Sum_probs=61.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|+|+-||.|.|+..+++.+ ....|.++|.++.+++..+++ ++. +.....|...+.- .+.||-|+++.-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-- 178 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-- 178 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T--
T ss_pred eEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh--
Confidence 789999999999999999843 235689999999999876654 444 4566777776655 789999998732
Q ss_pred cccccHHHHHHHHHhcccCCeEEE
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lv 315 (372)
.....+|..+.+++++||.+-
T Consensus 179 ---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCcEEE
Confidence 111237888999999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.9e-05 Score=64.86 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=48.5
Q ss_pred EEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+.+-.....+|.++|.|+|.+.+++.|...+. ..++++++|+|||||++-++.|....
T Consensus 33 lvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 33 LVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 33334567789999999999999999997444 47899999999999999999997665
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00077 Score=70.12 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=35.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC-------ceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL-------MAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~-------~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+|||.|||+|.|...+++... ....+.++|+++..++.++.+
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 5899999999999988876521 136789999999999888765
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=62.45 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEEeeccCC-CCCCC-CccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQL-PYPSL-SFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------gl~~~~~~~d~~~l-p~~~~-sFDlV 284 (372)
.+++||=||-|.|..+..+++.. ....++.+|+++..++.|++- ...+.+...|.... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 45899999999999999998774 346789999999999998864 12344554443221 11223 89999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.-..- ..... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 985321 21111 13589999999999999999874
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0019 Score=64.36 Aligned_cols=104 Identities=20% Similarity=0.113 Sum_probs=74.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC----CCCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL----PYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l----p~~~~sFDlV~~ 286 (372)
++|||+=|=||.|+.+.+..|. .+++.+|.|...++.|+++ |++ ..+.+.|+... .-...+||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 7899999999999999998764 3688899999999999886 543 34555554321 123458999998
Q ss_pred ccccc------cc--cccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 287 AQCGI------IW--DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 287 ~~~~~------~~--~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
----+ .| ..+...++..+.++|+|||.+++++....-
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 41100 11 123346788999999999999999775433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00049 Score=66.23 Aligned_cols=88 Identities=9% Similarity=-0.039 Sum_probs=61.8
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeecc
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISR 272 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~ 272 (372)
..+++.+.+...++ ..++|.+||.|..+..+++.......|+|+|.++.+++.|+++-. .+.+...+..
T Consensus 7 ll~Evl~~L~~~pg--------~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKPD--------GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCCC--------CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHH
Confidence 45566677765554 689999999999999999885434679999999999999987632 3444444443
Q ss_pred CCC--CCC--CCccEEEeccccc
Q 017377 273 QLP--YPS--LSFDMVHCAQCGI 291 (372)
Q Consensus 273 ~lp--~~~--~sFDlV~~~~~~~ 291 (372)
.+. .++ .+||.|++..++.
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCcc
Confidence 332 111 2799999864433
|
|
| >cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.40 E-value=3.2e-05 Score=57.46 Aligned_cols=53 Identities=13% Similarity=-0.027 Sum_probs=46.1
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
=+|.++|++.+|+-||++-|.+...+..+|||.|++.|+.++..|..+...|.
T Consensus 5 evA~~~gvs~~tlR~~~~~g~l~~~~~~~g~R~y~~~~l~~l~~i~~l~~~g~ 57 (67)
T cd04764 5 EVSEIIGVKPHTLRYYEKEFNLYIPRTENGRRYYTDEDIELLKKIKTLLEKGL 57 (67)
T ss_pred HHHHHHCcCHHHHHHHHHhcCCCCCCCCCCceeeCHHHHHHHHHHHHHHHCCC
Confidence 47889999999999999654444678899999999999999999999888776
|
Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=60.20 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=80.9
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC----e
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP----A 264 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~----~ 264 (372)
|-.-...+.+..++.+..+. .+||.||-|.|.....+.+..+...- -++.++..++..++.|.. +
T Consensus 83 Mm~WEtpiMha~A~ai~tkg---------grvLnVGFGMgIidT~iQe~~p~~H~--IiE~hp~V~krmr~~gw~ek~nV 151 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAISTKG---------GRVLNVGFGMGIIDTFIQEAPPDEHW--IIEAHPDVLKRMRDWGWREKENV 151 (271)
T ss_pred hhhhhhHHHHHHHHHHhhCC---------ceEEEeccchHHHHHHHhhcCCcceE--EEecCHHHHHHHHhcccccccce
Confidence 33444567777777776322 68999999999998888877654333 379999999998887652 3
Q ss_pred EEEEee--ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 017377 265 MIGNFI--SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 265 ~~~~~d--~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
.+.... -..-.++++.||-|.----..+. ++...+...+.|+|||+|.+-+-
T Consensus 152 iil~g~WeDvl~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 152 IILEGRWEDVLNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EEEecchHhhhccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 322211 01112678999999875322333 67777888999999999987653
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00083 Score=60.22 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=75.0
Q ss_pred cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--e
Q 017377 191 DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--A 264 (372)
Q Consensus 191 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~ 264 (372)
...++.-+.+.+++... . -...++||+-||+|.++...+++|. ..++.+|.+...++..+++ +.. .
T Consensus 23 PT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~ 94 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKI 94 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGE
T ss_pred CCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcce
Confidence 33345555666666543 0 0227899999999999999999985 4578899999999877765 333 3
Q ss_pred EEEEeecc-CC---CCCCCCccEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeCCC
Q 017377 265 MIGNFISR-QL---PYPSLSFDMVHCAQCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSPES 321 (372)
Q Consensus 265 ~~~~~d~~-~l---p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~--rvLkPGG~lvis~p~~ 321 (372)
.+...|.. .+ ......||+|++--- +........++..+. .+|+++|.+++.....
T Consensus 95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeeccCHHHHHHhhcccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 44444421 12 124688999998622 222111245666665 7999999999987643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >cd04767 HTH_HspR-like_MBC Helix-Turn-Helix DNA binding domain of putative HspR-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.38 E-value=3.4e-05 Score=64.15 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~ 81 (372)
+.-+|.++|++.+|+-|||+.|++...| .+|||+|++.|+.+|..|..|.. .|.
T Consensus 4 I~eVA~~~GVs~~TLR~wE~~GLl~p~r-~~G~R~Ys~~dv~rL~~I~~L~~e~G~ 58 (120)
T cd04767 4 IGVVAELLNIHPETLRIWERHGLIKPAR-RNGQRLYSNNDLKRLRFIKKLINEKGL 58 (120)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCcC-CCCcEEECHHHHHHHHHHHHHHHHcCC
Confidence 4568899999999999999999998766 49999999999999999999976 556
|
Putative helix-turn-helix (HTH) transcription regulator HspR-like proteins. Unlike the characterized HspR, these proteins have a C-terminal domain with putative metal binding cysteines (MBC). Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind spe |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0013 Score=63.38 Aligned_cols=95 Identities=23% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+.|||+|||+|.++...+..|. ..|.+++.|+ |.+.|++. .+. +.+..+..+++.+| +..|+|++.-.-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc--ceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 47899999999999988887764 4578888764 55666543 222 23334445666665 569999986432
Q ss_pred ccccccHH--HHHHHHHhcccCCeEEEE
Q 017377 291 IIWDKKEG--IFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 291 ~~~~~~~~--~~L~el~rvLkPGG~lvi 316 (372)
+-. -+.+ .-....++.|+|.|..+=
T Consensus 254 ~mL-~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 254 YML-VNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhh-hhHHHHHHHHHHHhhcCCCCcccC
Confidence 222 2221 122345699999999873
|
|
| >cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.33 E-value=3.9e-05 Score=61.83 Aligned_cols=60 Identities=12% Similarity=-0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHhcccccccce-eccCCCCccccchhhhhHHHhHHHHhhccc-cCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTL-SLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~c~~ 91 (372)
=+|.++|++.+|+-||++ .|++...|..||||+|++.|+..+..|..+ +..|. ++++...
T Consensus 5 EvA~~~gVs~~tLR~ye~~~gli~p~r~~~g~R~Yt~~di~~l~~I~~llr~~G~---~l~~i~~ 66 (99)
T cd04765 5 EVAEILGLPPHVLRYWETEFPQLKPVKRAGGRRYYRPKDVELLLLIKHLLYEKGY---TIEGAKQ 66 (99)
T ss_pred HHHHHHCcCHHHHHHHHHHcCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 378899999999999995 588887888999999999999999999985 55566 5666554
|
Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. |
| >cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA | Back alignment and domain information |
|---|
Probab=97.33 E-value=4.7e-05 Score=61.70 Aligned_cols=60 Identities=15% Similarity=0.012 Sum_probs=50.9
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=+|.+.|++.+|+-||++.|++.. .|-.||||.|++.|+.++..|..+...|. ++++...
T Consensus 5 eva~~~gvs~~tlR~ye~~Gll~~~~~~~~g~R~y~~~di~~l~~i~~lr~~g~---~l~~i~~ 65 (103)
T cd01106 5 EVAKLTGVSVRTLHYYDEIGLLKPSRRTENGYRLYTEEDLERLQQILFLKELGF---SLKEIKE 65 (103)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478999999999999999999965 56679999999999999999998888777 4544443
|
Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0046 Score=60.49 Aligned_cols=118 Identities=19% Similarity=0.067 Sum_probs=86.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+=+|.|.|+..++..+... |.++|+++.+++..+++ ++. +....+|+...+...+.||-|+++..
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-- 265 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-- 265 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC--
Confidence 689999999999999999987543 89999999999887765 333 34566777777766589999999743
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw 348 (372)
.....++....+.+++||.+.+.......... ......+..++.+.+.
T Consensus 266 ---~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~------~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 ---KSAHEFLPLALELLKDGGIIHYYEFVPEDDIE------ERPEKRIKSAARKGGY 313 (341)
T ss_pred ---CcchhhHHHHHHHhhcCcEEEEEeccchhhcc------cchHHHHHHHHhhccC
Confidence 22234788888899999999988775544111 0134556666666654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=58.40 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=70.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeecc-CC-----CCCCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISR-QL-----PYPSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~-~l-----p~~~~sFDlV~ 285 (372)
+++||||.=||..+..++..-+....++++|+++...+.+.+. |+. +.+....+. .+ ..+.++||+++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 7899999999988877777666678899999999998776542 443 222222211 11 13678999998
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.- +|-++......++.++||+||.+++.-
T Consensus 155 vD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 VD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred Ec----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 63 554444578899999999999999753
|
|
| >cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA | Back alignment and domain information |
|---|
Probab=97.30 E-value=5.3e-05 Score=56.26 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcccccccce-eccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.-+|..+|++.+|+-||++ .|++...|..||||.|+++++..+..|..+..-|.
T Consensus 4 ~eva~~~gvs~~tlr~w~~~~g~~~~~r~~~~~r~yt~~~v~~l~~i~~l~~~g~ 58 (68)
T cd01104 4 GAVARLTGVSPDTLRAWERRYGLPAPQRTDGGHRLYSEADVARLRLIRRLTSEGV 58 (68)
T ss_pred HHHHHHHCcCHHHHHHHHHhCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 3578999999999999996 68888888889999999999999999999888666
|
Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00064 Score=58.06 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=52.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
..++|+|||.|-+.....- +....+.|+|+++.+++.+..+ .+.+.+.+.+...+-+..+.||.++.+-
T Consensus 50 kkl~DLgcgcGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cchhhhcCchhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 7899999999988744433 3346689999999999988765 3344555666777777779999999873
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=61.74 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=66.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccC-CC--CCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQ-LP--YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~-lp--~~~~sFDlV~~~ 287 (372)
++|||+=|=||.|+.+.+..|. ..++.+|.|..+++.|+++ +++ ..+...|+.. +. -..+.||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999999887653 4588999999999998876 543 3455444422 11 024689999984
Q ss_pred ---cc--cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 ---QC--GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ---~~--~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+. -.....+...++..+.++|+|||.+++....
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 1111123346788899999999999877663
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0029 Score=57.73 Aligned_cols=121 Identities=19% Similarity=0.165 Sum_probs=63.4
Q ss_pred ccccc-hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------
Q 017377 188 LVFDG-VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------ 260 (372)
Q Consensus 188 ~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------ 260 (372)
..|.. .......+.+.+...++ ...+|||||.|......+-.. ......|+++.+...+.|...
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~~--------dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTPD--------DVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--TT---------EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCCC--------CEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 45532 23445556666666555 789999999999866655431 123468999999887655431
Q ss_pred -----CCC---eEEEEeeccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 -----GLP---AMIGNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 -----gl~---~~~~~~d~~~lp~~~---~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.. +.+..+|..+.++.. ..-|+|+++.. -+.++....|.+...-||+|-+++-..+
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 222 223333322211110 34699999864 3445555677888889999987664333
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0031 Score=57.85 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=66.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHH----HHHHHHcCCCeEEEEeeccCCC----CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQ----VQLALERGLPAMIGNFISRQLP----YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~----v~~A~~rgl~~~~~~~d~~~lp----~~~~sFDlV~~~~~ 289 (372)
.+||-+|.++|+...++++--.....|.+++.|+.. ++.|++|. ++.....|+. .| .--+.+|+|++. +
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~~D-V 151 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIFQD-V 151 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEEEE--
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEEec-C
Confidence 799999999999999998863334568999999844 56677663 4443333443 22 112479999986 2
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.-++..+.++.++...||+||+++++.-
T Consensus 152 --aQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 152 --AQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp --SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 2334455688899999999999999864
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK15043 transcriptional regulator MirA; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=8.4e-05 Score=69.17 Aligned_cols=56 Identities=11% Similarity=-0.000 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcccccccc-eeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLD-FVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.+.-+|.+.|++..|+=||| +.|++...|..||||+|++.|+.++..|..+..-|.
T Consensus 5 tIgeVA~~~GVs~~TLR~wErr~GLL~P~Rt~~G~R~Ys~~dv~rL~~I~~l~~~G~ 61 (243)
T PRK15043 5 TIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGV 61 (243)
T ss_pred CHHHHHHHHCcCHHHHHHHHHhcCCCCCccCCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 45568899999999999999 699999999999999999999999999998776666
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=61.01 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEe
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNF 269 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~ 269 (372)
.....+.+.+.+....+ ..|||||+|+|.++..|++.+ ..++++|+++.+++..+++ ..++.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES
T ss_pred CHHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeec
Confidence 45678888888876555 789999999999999999986 5688999999999988885 345777777
Q ss_pred eccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccC
Q 017377 270 ISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKP 310 (372)
Q Consensus 270 d~~~lp~~~---~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkP 310 (372)
|...+..+. +.-..|+++-- ++. ...++.++...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 877776554 45567777622 222 22355555553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0039 Score=67.14 Aligned_cols=103 Identities=14% Similarity=-0.007 Sum_probs=67.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-----------------------------------------CceeEEEEeeCCHHHHHH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-----------------------------------------LMAVCVAVYEATGSQVQL 256 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-----------------------------------------~~~~~v~gvD~s~~~v~~ 256 (372)
..++|-+||+|++....+... .....++|+|+++.+++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 689999999999987765420 011368999999999999
Q ss_pred HHHc----CCC--eEEEEeeccCCCCC--CCCccEEEecccc-cccc--ccHHHHHH---HHHhcccCCeEEEEEeCC
Q 017377 257 ALER----GLP--AMIGNFISRQLPYP--SLSFDMVHCAQCG-IIWD--KKEGIFLI---EADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 257 A~~r----gl~--~~~~~~d~~~lp~~--~~sFDlV~~~~~~-~~~~--~~~~~~L~---el~rvLkPGG~lvis~p~ 320 (372)
|+++ |+. +.+...|..+++.+ .++||+|+++--. ..+. .+...+.. +..+...+|+.+++.++.
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8876 553 45666677766544 3589999998221 1111 12222333 334444489998887764
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.01 Score=58.01 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..++|||||++|.|+..|+++|. .|+++|..+ +-.... ....+.....+.....-+.+.+|+|+|--+ +.
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e~ 281 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----EK 281 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecc-----cC
Confidence 47999999999999999999874 689999654 222222 222344444443333222678999999733 55
Q ss_pred HHHHHHHHHhcccCC--eEEEEEeC
Q 017377 297 EGIFLIEADRLLKPG--GYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPG--G~lvis~p 319 (372)
|..+..-|.+.|..| ..+|+..-
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEE
Confidence 556666677777655 45555543
|
|
| >cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0001 Score=59.19 Aligned_cols=53 Identities=15% Similarity=-0.028 Sum_probs=48.9
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
=+|.+.|++.+|+-||++.|++...+..+|||+|++.|+.++..+..|...|.
T Consensus 5 eva~~~gi~~~tlr~~~~~Gll~~~~~~~g~r~y~~~dv~~l~~i~~l~~~g~ 57 (100)
T cd00592 5 EVAKLLGVSVRTLRYYEEKGLLPPERSENGYRLYSEEDLERLRLIRRLRELGL 57 (100)
T ss_pred HHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCcccCHHHHHHHHHHHHHHHcCC
Confidence 37889999999999999999999888899999999999999999999987666
|
Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=52.34 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=77.9
Q ss_pred cccchhHHHHHHHHHHccC-CCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C--
Q 017377 189 VFDGVKDYSRQIAEMIGLG-TDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G-- 261 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g-- 261 (372)
.-...++.-+.+.+++... . ...++||+=+|+|.++...+++|. ..++.+|.+...++..+++ +
T Consensus 22 ~RPT~drVREalFNil~~~~i-------~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~ 92 (187)
T COG0742 22 TRPTTDRVREALFNILAPDEI-------EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLE 92 (187)
T ss_pred cCCCchHHHHHHHHhcccccc-------CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCc
Confidence 3334445555666666542 1 227899999999999999999975 4567799999999887766 3
Q ss_pred CCeEEEEeeccCC-CCCCC--CccEEEecccccccc-ccHHHHH--HHHHhcccCCeEEEEEeCCC
Q 017377 262 LPAMIGNFISRQL-PYPSL--SFDMVHCAQCGIIWD-KKEGIFL--IEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 262 l~~~~~~~d~~~l-p~~~~--sFDlV~~~~~~~~~~-~~~~~~L--~el~rvLkPGG~lvis~p~~ 321 (372)
..+.+...|+... +-... .||+|+.--- ++.. -+....+ .+-...|+|||.+++.....
T Consensus 93 ~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 93 GEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2333443444322 22223 4999998632 2221 1112222 23567899999999986643
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=54.40 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=88.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEE-EeeccCCC---CCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIG-NFISRQLP---YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~-~~d~~~lp---~~~~sFDlV~~~~~~~~~ 293 (372)
+.+||||+-||.|+..++++|. ..|.++|..-.++..-.+....+... ..+...+. +. +..|+|+|--+++..
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFISL 157 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFISL 157 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhhH
Confidence 8999999999999999999974 56899999999887766665554432 22222222 22 368899997554443
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEe-CCCCC-CCC------C-CcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTS-PESKP-RGS------S-SSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~-p~~~~-~~~------~-~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..+|-.+..+++|||.++.-. |-... ++. . .+..+...-..+.++++..+|...--
T Consensus 158 ----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 158 ----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 458899999999998887644 33222 111 1 12234556777888888889987643
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=64.12 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=69.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp-~~~~sFDlV~~~~~~~ 291 (372)
-+|||+.||+|..+..++.+......|+++|+++..++.++++ ++. +.+.+.|+..+- ...+.||+|...- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4799999999999999998732225689999999999888765 333 444444443321 1235799998752 2
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+..++..+.+.+++||++.++..
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2223489999999999999999843
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00016 Score=49.93 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=40.7
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhh
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLEL 73 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 73 (372)
=+|.++|++..|+-+|++-|++...+..+|+|+|++.|+.++..|
T Consensus 5 e~a~~~gv~~~tlr~~~~~g~l~~~~~~~~~~~y~~~~v~~l~~i 49 (49)
T cd04761 5 ELAKLTGVSPSTLRYYERIGLLSPARTEGGYRLYSDADLERLRLI 49 (49)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCEEeCHHHHHHhhhC
Confidence 478899999999999999999987788889999999999998765
|
Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >smart00422 HTH_MERR helix_turn_helix, mercury resistance | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00011 Score=54.69 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=48.2
Q ss_pred HHHHHHHHhcccccccceeccCCCC-ccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
-+|.+.|++.+|+-+|++-|++... +..+|||+|++.|+.++..+..|..-|.
T Consensus 5 eva~~~gvs~~tlr~~~~~gli~~~~~~~~g~r~y~~~dl~~l~~i~~lr~~g~ 58 (70)
T smart00422 5 EVAKLAGVSVRTLRYYERIGLLPPPIRTEGGYRLYSDEDLERLRFIKRLKELGF 58 (70)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCEecCHHHHHHHHHHHHHHHcCC
Confidence 4788999999999999999999976 8899999999999999999999876666
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=55.34 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=77.4
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEee
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFI 270 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d 270 (372)
+..|..++...++ .+|+|-|.|+|+++.+++..-..+..+...|.++.-.+.|++. ++. +.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 4467788888888 8999999999999999998754556788899999887777653 543 4444445
Q ss_pred ccCCCC--CCCCccEEEeccccccccccHHHHHHHHHhcccCCe-EEEEEeC
Q 017377 271 SRQLPY--PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGG-YFVLTSP 319 (372)
Q Consensus 271 ~~~lp~--~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG-~lvis~p 319 (372)
.....| .+..+|.|+.- + +.|-.++--+..+||.+| +++-..|
T Consensus 166 Vc~~GF~~ks~~aDaVFLD-----l-PaPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLD-----L-PAPWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccCCccccccccceEEEc-----C-CChhhhhhhhHHHhhhcCceEEeccH
Confidence 555444 35789988764 2 333346666777998876 5555555
|
|
| >PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.98 E-value=8.6e-05 Score=48.98 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccccccceeccC-CCCccccchhhh
Q 017377 29 IVALIAVLGSSTSNTLDFVTSS-SKPDIYSSYRRL 62 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~ 62 (372)
=+|.++|++..|+=|||+.|+| ...|-.||||+|
T Consensus 4 e~A~~~gvs~~tlR~ye~~Gll~~~~r~~~g~R~Y 38 (38)
T PF00376_consen 4 EVAKLLGVSPRTLRYYEREGLLPPPERTEGGYRRY 38 (38)
T ss_dssp HHHHHHTS-HHHHHHHHHTTSS-SSEETTTS-EEE
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCccCCCCeecC
Confidence 3789999999999999999999 789999999987
|
One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0029 Score=58.06 Aligned_cols=120 Identities=23% Similarity=0.211 Sum_probs=77.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCCC-eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLP-AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+++|||+|.|.-|..|+-..+ ...++-+|....-+.+- .+.+++ +.+.+..++.+.-...-||+|.|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 47999999999999998874433 34488899987655433 344777 77777666666422111999999744
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
.+...++.-+...+++||.++..-.. .........+.......+.+..
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~----------~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL----------AGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH----------hhhhhHHHHHHHHHhhcCcEEE
Confidence 33344667788999999987643221 2233445555555555555543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=58.42 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=72.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc-eeEEEEeeCCHHHHHHHHHc----CCCe-EEEEeeccCCC--CCC-CCccEEEec-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQLALER----GLPA-MIGNFISRQLP--YPS-LSFDMVHCA- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~-~~~v~gvD~s~~~v~~A~~r----gl~~-~~~~~d~~~lp--~~~-~sFDlV~~~- 287 (372)
.+|||+.++.|.=+.++++.... ...|+++|.++.-++...++ |+.. .....|...++ .+. +.||.|+.-
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDa 237 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECC
Confidence 89999999999988888887332 34469999999877655543 6653 44455554443 222 359999862
Q ss_pred -----ccc-------cccccc--------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 -----QCG-------IIWDKK--------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 -----~~~-------~~~~~~--------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+++ ..+... ...+|....++|||||.++.++.....
T Consensus 238 PCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 238 PCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 111 111111 235789999999999999999987655
|
|
| >PRK13182 racA polar chromosome segregation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00017 Score=63.99 Aligned_cols=61 Identities=8% Similarity=-0.152 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.-+|..+|+|.+|+-||++-|.+...|..||||+|++.|+..|..|..+..-|. +++++..
T Consensus 4 ~evA~~lGVS~~TLRrw~k~g~L~~~R~~~G~R~y~~~dl~~L~~I~~l~~~Gm---~i~~i~~ 64 (175)
T PRK13182 4 PFVAKKLGVSPKTVQRWVKQLNLPCEKNEYGHYIFTEEDLQLLEYVKSQIEEGQ---NMQDTQK 64 (175)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCCCcCCCCCEEECHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 357899999999999999888888899999999999999999999998887777 5666643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.01 Score=56.57 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCcHHHHHHHh-cCCceeEEEEeeCCHHHHHHHHHc-------CCCeEEEEeeccCCCCCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVS-LKLMAVCVAVYEATGSQVQLALER-------GLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~-~~~~~~~v~gvD~s~~~v~~A~~r-------gl~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
+++|+=||||.=-++..+.. +......++++|+++..++.+++- +-...+...|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997666655554 323456789999999999888642 2335566666666655557899999874
Q ss_pred cccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+..+. ++...+|..+.+.++||..+++...
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 34433 3556799999999999999998743
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00041 Score=56.01 Aligned_cols=96 Identities=18% Similarity=0.056 Sum_probs=38.2
Q ss_pred EEeCCCCcHHHHHHHhcCCce--eEEEEeeCCH---HHHHHHHHcCCC--eEEEEeeccCC--CCCCCCccEEEeccccc
Q 017377 221 LDVGCGFGSFGAHLVSLKLMA--VCVAVYEATG---SQVQLALERGLP--AMIGNFISRQL--PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 221 LDIGCG~G~~~~~L~~~~~~~--~~v~gvD~s~---~~v~~A~~rgl~--~~~~~~d~~~l--p~~~~sFDlV~~~~~~~ 291 (372)
||||+..|..+..+++.-... ..++++|..+ ..-+..++.++. +.+...+..+. .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999988887652121 3688999998 344444433332 44444433221 133578999998742
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|-.+.....+..+.+.|+|||.+++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 322444567889999999999999865
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0058 Score=55.50 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=63.6
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~ 288 (372)
...|+|+|+.+|+++..+++.......|+++|+.+.-. -..+.+...|...-+ +....+|+|+|-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 37899999999999999998744444588999876421 112444444544322 3445589999742
Q ss_pred c---ccccc-ccH------HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 289 C---GIIWD-KKE------GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 289 ~---~~~~~-~~~------~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. .-++. +.. ..++.-...+|+|||.+++-..-.
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 1 11221 111 134566678999999999987643
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0041 Score=53.14 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=36.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHh-----cCCceeEEEEeeCCHHHHHHHHHc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVS-----LKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~-----~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 347899999999999999988 3 446799999999998877665
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0085 Score=53.81 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=63.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
++|||+|.|+|..+...+..|. ..++..|+.+..++.+. .+|+.+.+...+ +-..+..||+|+...+++..
T Consensus 81 krVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d---~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHAD---LIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeecc---ccCCCcceeEEEeeceecCc
Confidence 7999999999998888777754 33566788877765443 345555544333 22367889999999877665
Q ss_pred cccHHHHHHHHHhcccCCeEEEE-EeCCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVL-TSPES 321 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvi-s~p~~ 321 (372)
..-..++. +.+.|+..|..++ -+|..
T Consensus 156 -~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 156 -TEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred -hHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 33334566 6666655555444 44543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.019 Score=56.87 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=83.5
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCce-------------------------
Q 017377 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMA------------------------- 241 (372)
Q Consensus 187 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~------------------------- 241 (372)
-..+++...+-+.++..+-...+ |.. ...++|-=||+|++.+..+-.+...
T Consensus 166 yR~~~g~ApLketLAaAil~lag--w~~--~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~ 241 (381)
T COG0116 166 YRVYDGPAPLKETLAAAILLLAG--WKP--DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLR 241 (381)
T ss_pred ccccCCCCCchHHHHHHHHHHcC--CCC--CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHH
Confidence 33445544555555554432222 111 1579999999999988776653210
Q ss_pred ------e-------EEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-cccccc--H--
Q 017377 242 ------V-------CVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG-IIWDKK--E-- 297 (372)
Q Consensus 242 ------~-------~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~-~~~~~~--~-- 297 (372)
. .++|.|+++.+++.|+.+ |+. +.+.+.|...++-+-+.+|+|+||--. .-.... .
T Consensus 242 ~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~ 321 (381)
T COG0116 242 EEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAK 321 (381)
T ss_pred HHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHH
Confidence 1 277999999999998866 655 667778888777554899999998210 111111 1
Q ss_pred --HHHHHHHHhcccCCeEEEEEeC
Q 017377 298 --GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 298 --~~~L~el~rvLkPGG~lvis~p 319 (372)
..+...+++.++--+.+++++.
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcc
Confidence 2355677788888888888866
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0061 Score=61.80 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=76.4
Q ss_pred ccccch----hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---
Q 017377 188 LVFDGV----KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--- 260 (372)
Q Consensus 188 ~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--- 260 (372)
.+|+.. +.+++...+.+...++ .+|||+=||.|.|+..|+++. ..|+|+|+++.+++.|+++
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~--------~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGG--------ERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCC--------CEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHH
Confidence 466543 3445555555555443 789999999999999999653 6699999999999888765
Q ss_pred -CCC-eEEEEeeccCCCC---CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 -GLP-AMIGNFISRQLPY---PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 -gl~-~~~~~~d~~~lp~---~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++. +.+...+++++.- ....+|.|+..--.-. .+ ..+++.+. -++|-..+++|..
T Consensus 338 n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~-~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 338 NGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--AD-REVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred cCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CC-HHHHHHHH-hcCCCcEEEEeCC
Confidence 554 5666666665542 2357899987511111 11 12444444 4567777888754
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0073 Score=59.73 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=36.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFIS 271 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~ 271 (372)
..|||+-||.|.|+..|++.. ..|+|+|+++.+++.|+++ ++. +.+..+++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 379999999999999999864 4589999999999988764 554 55555443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0083 Score=57.52 Aligned_cols=126 Identities=25% Similarity=0.296 Sum_probs=80.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE-EEEeeccCC-C-CCCCCccEEEec---
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM-IGNFISRQL-P-YPSLSFDMVHCA--- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~-~~~~d~~~l-p-~~~~sFDlV~~~--- 287 (372)
..|||+.+|.|.=+..+++.-.....+++.|++..-++..+++ |+... ....|.... + .....||.|+.-
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 7899999999999999988744456799999999888665543 66543 333444433 1 233469999872
Q ss_pred -cc--cccc-------c-cc-------HHHHHHHHHhcc----cCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHh
Q 017377 288 -QC--GIIW-------D-KK-------EGIFLIEADRLL----KPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEK 345 (372)
Q Consensus 288 -~~--~~~~-------~-~~-------~~~~L~el~rvL----kPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~ 345 (372)
.. +..- . .+ ...+|....+.+ ||||+++.++...... | ..+.++.|.++
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e------E---NE~vV~~fl~~ 237 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE------E---NEEVVEKFLKR 237 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG------G---THHHHHHHHHH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH------H---HHHHHHHHHHh
Confidence 11 1111 0 11 125788999999 9999999998855431 1 12345556555
Q ss_pred c-CeeEEe
Q 017377 346 I-CWSLIA 352 (372)
Q Consensus 346 l-cw~~~~ 352 (372)
. .+++..
T Consensus 238 ~~~~~l~~ 245 (283)
T PF01189_consen 238 HPDFELVP 245 (283)
T ss_dssp STSEEEEC
T ss_pred CCCcEEEe
Confidence 4 555543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.013 Score=57.01 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--cCC-----CeEEEEeeccCCCCC-CCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--RGL-----PAMIGNFISRQLPYP-SLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--rgl-----~~~~~~~d~~~lp~~-~~sFDlV~~~ 287 (372)
.+.+|||+|.|.|.-...+-+--+.--+++-++.|+..-+.... .++ +..-.++...+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 34679999999997554443332222334445667655443221 111 111122233455554 3568888776
Q ss_pred ccccccccc--HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIWDKK--EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~~~~--~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.-+.+...+ ....++.+..++.|||.|+|..++...
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 655665322 124688889999999999999886544
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.055 Score=52.02 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---HHHHHc----C-C---
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALER----G-L--- 262 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~~A~~r----g-l--- 262 (372)
+..++++....+.... .....+||=-|||.|.++..|+..|+. +-|-+.|--|+ .++... + .
T Consensus 132 kpii~~l~~lfp~~~~----~r~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IY 204 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGK----ERTKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIY 204 (369)
T ss_pred hhHHHHHHhhCCCccc----cccCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEE
Confidence 3455566655554221 112357999999999999999987753 45556666664 233311 0 0
Q ss_pred CeEE--------------------EEe----eccCC-------------CCCCCCccEEEeccccccccccHHHHHHHHH
Q 017377 263 PAMI--------------------GNF----ISRQL-------------PYPSLSFDMVHCAQCGIIWDKKEGIFLIEAD 305 (372)
Q Consensus 263 ~~~~--------------------~~~----d~~~l-------------p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~ 305 (372)
|... ..+ ....+ +-..++||+|+..+ ++.-..+.-.+|..+.
T Consensus 205 PfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~ 283 (369)
T KOG2798|consen 205 PFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIY 283 (369)
T ss_pred eeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHH
Confidence 0000 000 00000 01124699999864 3444455567899999
Q ss_pred hcccCCeEEEEEeCCCCCCCC----CCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 306 RLLKPGGYFVLTSPESKPRGS----SSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 306 rvLkPGG~lvis~p~~~~~~~----~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+|+|||+++=.+|.-.+-.. .+....+-..+++...++.++|++..++
T Consensus 284 ~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 284 KILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999999988776544111 1111233446777888899999998776
|
|
| >cd04778 HTH_MerR-like_sg2 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.00081 Score=61.98 Aligned_cols=60 Identities=8% Similarity=-0.117 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=||..+|+|-.|.=|||+.|++...|..+|||.|++.++.+|..|..|+.-|. ++++...
T Consensus 6 elA~~~Gvs~~tIR~Ye~~GLL~p~r~~~~~r~Y~~~~v~rL~~I~~l~~~G~---~L~~I~~ 65 (219)
T cd04778 6 DLARAAGTTVRNVRAYQDRGLLPPPRRRGRVAIYNDSHLARLRLINQLLERGY---TLAHIAE 65 (219)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCcccCCCCcccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 47889999999999999999999888889999999999999999999997666 4555443
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.1 Score=47.63 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=73.2
Q ss_pred EEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCC-ccEEEecccccc
Q 017377 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLS-FDMVHCAQCGII 292 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~s-FDlV~~~~~~~~ 292 (372)
|.||||--|.+..+|++++.. ..++++|+++.-++.|++. ++. +.+...|.-. +++.+. .|.|+.+++--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH-
Confidence 689999999999999999854 5688999999999988865 433 3333333211 233443 79998875411
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.-...+|.+....++..-.|++.-. . ....++.+....+|.+..+.
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lILqP~-~-------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLILQPN-T-------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEEEEES-S--------------HHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHhhHHHhccCCeEEEeCC-C-------------ChHHHHHHHHHCCCEEEEeE
Confidence 2223567777777776667777532 2 23567888889999988653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0086 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=34.6
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
++||||||.|.++..++..+.. ..++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHH
Confidence 4899999999999999887643 4799999999999877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=52.56 Aligned_cols=105 Identities=11% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCCeEEEeCCCCc--HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCC--eEEEEeeccCC-------------C
Q 017377 216 GVQSVLDVGCGFG--SFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLP--AMIGNFISRQL-------------P 275 (372)
Q Consensus 216 ~~~~VLDIGCG~G--~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~--~~~~~~d~~~l-------------p 275 (372)
+++..||||||-- .....++..-.....|.-+|+++..+..++.. ... ..+..+|..+. .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5689999999953 24555555433457788899999988755543 223 45555554331 1
Q ss_pred CCCCCccEEEecccccccc--ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 276 YPSLSFDMVHCAQCGIIWD--KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~--~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
| ++.+=+++ ..++++.. +++..++..+...|.||.+|+|+.....
T Consensus 148 ~-~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 F-DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp T-TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred C-CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 2 23333443 33555554 3567899999999999999999987553
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.051 Score=46.46 Aligned_cols=97 Identities=23% Similarity=0.201 Sum_probs=61.3
Q ss_pred EEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC--CCCCCccEEEeccccccccc-----cH---HHHHHHHHhc
Q 017377 244 VAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQCGIIWDK-----KE---GIFLIEADRL 307 (372)
Q Consensus 244 v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~~~~~-----~~---~~~L~el~rv 307 (372)
|.+.|+.+.+++.++++ +. .+.+...+-+.+. .+.+++|+|+-|.+...-.+ .+ -.+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 78899999999888776 33 2454444333333 23358999999866544322 11 2689999999
Q ss_pred ccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 017377 308 LKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (372)
Q Consensus 308 LkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lc 347 (372)
|+|||.+.+....-.. +-..+.+.+.+|.+.+.
T Consensus 82 L~~gG~i~iv~Y~GH~-------gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 82 LKPGGIITIVVYPGHP-------GGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEEEEEE--STC-------HHHHHHHHHHHHHHTS-
T ss_pred hccCCEEEEEEeCCCC-------CCHHHHHHHHHHHHhCC
Confidence 9999999999876544 55667778888887654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.062 Score=52.68 Aligned_cols=105 Identities=20% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--------CeEEEEeeccC-CCCCCCCccE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--------PAMIGNFISRQ-LPYPSLSFDM 283 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--------~~~~~~~d~~~-lp~~~~sFDl 283 (372)
.++||=+|.|.|.-...+.+. +....|+-+|.++.|++.++.. .+ .+.+.+.|+.+ +.-..+.||.
T Consensus 290 a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 478999999999999999876 3457899999999999998843 11 12333333322 1223468999
Q ss_pred EEeccccccccccH-----HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 284 VHCAQCGIIWDKKE-----GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 284 V~~~~~~~~~~~~~-----~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|+...- -.-++.. ..+..-+.|.|+++|.+++....+..
T Consensus 369 vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 369 VIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred EEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 987521 1111111 23566788999999999998665544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.019 Score=50.51 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCC--CCCCC-ccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLP--YPSLS-FDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp--~~~~s-FDlV~~~ 287 (372)
.+|+|+.||.|..+..++... ..|+++|+++..++.|+.+ |+. +.+...|..++. +.... ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999874 4588999999999988865 543 566666644331 11122 8999986
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.058 Score=48.51 Aligned_cols=133 Identities=18% Similarity=0.113 Sum_probs=69.7
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHH----------HHHHHHHcCCC-eEEEEeeccCCCCCCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGS----------QVQLALERGLP-AMIGNFISRQLPYPSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~----------~v~~A~~rgl~-~~~~~~d~~~lp~~~~sFDlV~ 285 (372)
.+|+|+=.|.|.|+..+... +.. ..|+++-..+. +-..+++.... ..........++ +.+..|+++
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vgp~-G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~ 127 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVGPK-GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVP 127 (238)
T ss_pred CEEEEEecCCccHhhhhchhcCCc-eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccc
Confidence 89999999999999998875 322 23444333222 11122222111 111101111222 333444444
Q ss_pred e--------ccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCC--CCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 286 C--------AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG--SSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 286 ~--------~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~--~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
. +.. +| ......+..++++.|||||.+++.+.....-. ......++-.-..+..-.+..+|++..+.
T Consensus 128 ~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 128 TAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 3 322 22 24445789999999999999999876544310 00111222222334444577788887663
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.033 Score=50.41 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=31.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
-.+.|||||.|.+...|+...+. ..+.|+++-...-+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHH
Confidence 35899999999999999988655 458888886655544443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.021 Score=58.15 Aligned_cols=80 Identities=26% Similarity=0.289 Sum_probs=57.1
Q ss_pred cceeeecCCCcccccch----hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHH
Q 017377 177 ENQIAFHSEDGLVFDGV----KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS 252 (372)
Q Consensus 177 ~~~~~F~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~ 252 (372)
+-.++|+- +.+|+.- +.++..+.++..+..+ ..+||+-||||.++..++.. +..|.|+++++.
T Consensus 350 ~ltF~iSp--~AFFQ~Nt~~aevLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~---~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 350 GLTFRISP--GAFFQTNTSAAEVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARG---VKRVIGVEISPD 416 (534)
T ss_pred CeEEEECC--chhhccCcHHHHHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhcc---ccceeeeecChh
Confidence 34445554 4577533 4456666677666665 78999999999999999875 356899999999
Q ss_pred HHHHHHHc----CCC-eEEEEe
Q 017377 253 QVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 253 ~v~~A~~r----gl~-~~~~~~ 269 (372)
.++.|+.+ |+. +.+.++
T Consensus 417 aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 417 AVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred hcchhhhcchhcCccceeeeec
Confidence 99988765 443 556655
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.067 Score=53.29 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCCeE-EEEeeccCCC---CCCCCccEEEe-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLPAM-IGNFISRQLP---YPSLSFDMVHC- 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~~~-~~~~d~~~lp---~~~~sFDlV~~- 286 (372)
...+|||+.+.+|.=+.+++..-..+..|.+.|.+..-+....+ .|+... ..+.|...+| |+. +||-|..
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLD 319 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLD 319 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeec
Confidence 45799999999998777776653334568899999887765443 376543 4556666555 554 8999984
Q ss_pred ---ccccccc-------c----------ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 287 ---AQCGIIW-------D----------KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 287 ---~~~~~~~-------~----------~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++.-... . .-..++|.....++++||+||.++.....
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 4311111 0 11235788889999999999999886654
|
|
| >cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0039 Score=42.29 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhh
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLEL 73 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 73 (372)
=+|.+++++++|+..|.+-|.+...+..+|+++|+..|+..++.|
T Consensus 5 e~a~~lgvs~~tl~~~~~~g~~~~~~~~~~~~~~~~~ei~~~~~~ 49 (49)
T cd04762 5 EAAELLGVSPSTLRRWVKEGKLKAIRTPGGHRRFPEEDLERLLGI 49 (49)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCceeCCCCceecCHHHHHHHHhC
Confidence 367889999999999999999887777789999999999998764
|
Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.045 Score=48.96 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=67.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.++.|+|.|+|.++...++. .-.|.+++.++.....|.++ |. ++.+.+.|+....| ..-|+|+|...-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 57999999999988776654 35688999999988888887 22 35566777777766 56799999632111
Q ss_pred cc-ccHHHHHHHHHhcccCCeEEE
Q 017377 293 WD-KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 293 ~~-~~~~~~L~el~rvLkPGG~lv 315 (372)
.. +....++..+...||-+|.++
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccc
Confidence 11 233357778888999998887
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.042 Score=53.81 Aligned_cols=94 Identities=21% Similarity=0.195 Sum_probs=66.9
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|+=+|+| .|..+..+++. ..+.|+++|.++.-.+.|++.|.+..+...+....+--.+.||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~------- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG------- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-------
Confidence 667766665 56778888875 23779999999999999999988765542222222211234999997622
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...+....+.||+||.+++...+.
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCCC
Confidence 236778889999999999998764
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.21 Score=49.95 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=33.2
Q ss_pred CCCCCCccEEEecccccccccc-H-------------------------------------HHHHHHHHhcccCCeEEEE
Q 017377 275 PYPSLSFDMVHCAQCGIIWDKK-E-------------------------------------GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 275 p~~~~sFDlV~~~~~~~~~~~~-~-------------------------------------~~~L~el~rvLkPGG~lvi 316 (372)
-||+++.+++|++.+ .||... | ..+|+-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 389999999999987 677421 0 1123333456889999999
Q ss_pred EeCCCCC
Q 017377 317 TSPESKP 323 (372)
Q Consensus 317 s~p~~~~ 323 (372)
+......
T Consensus 236 ~~~Gr~~ 242 (386)
T PLN02668 236 VCLGRTS 242 (386)
T ss_pred EEecCCC
Confidence 9876643
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.15 Score=47.80 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+.+|+|||||.=-++....... ....++|+|++..++++...- +++......|...- .+....|+.+..-. ++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLllK~-lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-PPKEPADLALLLKT-LP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-CCCCCcchhhHHHH-HH
Confidence 5899999999999998877654 335899999999999876543 66655555554333 24577999998754 33
Q ss_pred ccccHH-HHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 293 WDKKEG-IFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 293 ~~~~~~-~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
..+... ..-.++...++ .-.+++|.|...-..+. .--....-..++.++..-.|..-
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~-~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRN-KGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES--------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCc-cccccCHHHHHHHhcccCCceee
Confidence 322221 12122223332 23566676654331110 00111223345666666677744
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.077 Score=49.19 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=32.4
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
..++.|++|+|||||.+++..... . ...+....++.+|.+. +.+||.|+.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~----------~---~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWN----------R---VDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccc----------c---HHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 357899999999999988743210 0 1122333466777754 556899875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.13 Score=49.64 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCC--eE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP--AM 265 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~--~~ 265 (372)
...|+..+.+.+...... ....-++||||+|....-..|..+- ...+++|.|+++..++.|++. ++. +.
T Consensus 82 R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 347888888887654330 0113589999999875443343331 247799999999999998864 333 33
Q ss_pred EEEeecc-C----CCCCCCCccEEEecccccc
Q 017377 266 IGNFISR-Q----LPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 266 ~~~~d~~-~----lp~~~~sFDlV~~~~~~~~ 292 (372)
+...... . +.-+++.||+.+|+--++.
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 3222111 1 1123468999999854443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.24 Score=44.86 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH----HHHHHc-CCCeEEEEeeccCCC----CCCCCccEEEe
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV----QLALER-GLPAMIGNFISRQLP----YPSLSFDMVHC 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v----~~A~~r-gl~~~~~~~d~~~lp----~~~~sFDlV~~ 286 (372)
...+||=+|+.+|+...++++--. ...+.+++.|+... ..|.+| ++-..+. |+. .| .--+..|+|.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~--DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILE--DAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeec--ccC-CcHHhhhhcccccEEEE
Confidence 348999999999999999887632 35588999998664 456655 2223333 332 22 11245888887
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-- .-+.....+..++...|++||+++++.-.
T Consensus 152 DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 152 DV---AQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred ec---CCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 51 12233345788899999999988887543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.17 Score=46.19 Aligned_cols=102 Identities=13% Similarity=-0.032 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHH-HHHHc---CCCeEEEEeeccCCC-------C-CCCCc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQ-LALER---GLPAMIGNFISRQLP-------Y-PSLSF 281 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~-~A~~r---gl~~~~~~~d~~~lp-------~-~~~sF 281 (372)
|++|+|+|.-.|..+..+++. -.....|.++|++-.... .|.+. ...+.+..+|..+.. . ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 479999999998877666543 213467999999543332 22222 124555555544321 1 11233
Q ss_pred cEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 282 DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 282 DlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+|+-- + .|..++....|+....+++||+|+++.+..
T Consensus 113 vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 113 VLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred eEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 344443 3 455577777888899999999999987653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.92 Score=42.57 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=59.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH--HHHHHc--------CCCeEEEEee--c-cCCCCCCCC-ccE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV--QLALER--------GLPAMIGNFI--S-RQLPYPSLS-FDM 283 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v--~~A~~r--------gl~~~~~~~d--~-~~lp~~~~s-FDl 283 (372)
.+||++|.|+|.-+..++.... ..+.-.|...... +..... |-.+....++ . ....+-... ||+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 6799999999988877776532 3344456554332 222111 2122222221 1 111111122 999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 284 V~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+++.|+++- .....++.-+...|-.+|.+++..+-
T Consensus 166 ilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEec
Confidence 9999998775 44455888888899999977777664
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.51 Score=46.36 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcC---------------CceeEEEEeeCCHHHHH-----------HHHHcCCCeE-EE-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLK---------------LMAVCVAVYEATGSQVQ-----------LALERGLPAM-IG- 267 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~---------------~~~~~v~gvD~s~~~v~-----------~A~~rgl~~~-~~- 267 (372)
+.-+|+|+||..|..+..+.+.- .....+.--|.-.+-.. .... ..++. .+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 34689999999999887776531 12345666665432211 1111 12222 11
Q ss_pred EeeccCCCCCCCCccEEEeccccccc
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
..+...--||++|.|+++++.+ .||
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHW 119 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHW 119 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB
T ss_pred CchhhhccCCCCceEEEEEech-hhh
Confidence 1233333489999999999976 666
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.88 Score=47.06 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=76.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcC---CceeEEEEeeCCHHHHHHHHHc----CCC--eE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLALER----GLP--AM 265 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~---~~~~~v~gvD~s~~~v~~A~~r----gl~--~~ 265 (372)
...+.+++.+...+. .+|.|-.||+|.+.....+.- .....+.|.|.++.....|+.+ |++ +.
T Consensus 173 ~v~~liv~~l~~~~~--------~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 173 EVSELIVELLDPEPR--------NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred HHHHHHHHHcCCCCC--------CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 345566666665333 589999999998866655431 1126689999999999888865 444 23
Q ss_pred EEEeeccCCCC-----CCCCccEEEecccc--cccc---------------------c-cHHHHHHHHHhcccCCeEEEE
Q 017377 266 IGNFISRQLPY-----PSLSFDMVHCAQCG--IIWD---------------------K-KEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 266 ~~~~d~~~lp~-----~~~sFDlV~~~~~~--~~~~---------------------~-~~~~~L~el~rvLkPGG~lvi 316 (372)
....++..-|. ..+.||.|+++--+ -.|. . ....++..+...|+|||...+
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 33333333332 34679999987221 1111 0 113578899999999998887
Q ss_pred EeCCC
Q 017377 317 TSPES 321 (372)
Q Consensus 317 s~p~~ 321 (372)
..|..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 77644
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.1 Score=44.58 Aligned_cols=100 Identities=20% Similarity=0.107 Sum_probs=64.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-C-----CC-CCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-L-----PY-PSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-l-----p~-~~~sFDlV~~~~~ 289 (372)
.+||.+|||. |..+..+++.... ..++++|.++...+.+++.+- ..+......+ + .+ ..+.+|+|+-.-.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 6899999987 8888888876321 347888999999999988731 1222111110 0 12 2346999987421
Q ss_pred cc--------------cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GI--------------IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~--------------~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +-..+....+.++.+.|+|+|.+++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 0012234578999999999999998764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.059 Score=47.01 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCCccEEEecccccccc-------ccH---HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 278 SLSFDMVHCAQCGIIWD-------KKE---GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~-------~~~---~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++||.+.|..++.|.. -++ ...+.++.++|||||.++++.|.-..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 57899999988877763 111 25889999999999999999996654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3 Score=41.63 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred CeEEEeCCCCcH----HHHHHHhc--CCceeEEEEeeC----CHHHH--------HHHHHcCCCeEEEEeecc---C---
Q 017377 218 QSVLDVGCGFGS----FGAHLVSL--KLMAVCVAVYEA----TGSQV--------QLALERGLPAMIGNFISR---Q--- 273 (372)
Q Consensus 218 ~~VLDIGCG~G~----~~~~L~~~--~~~~~~v~gvD~----s~~~v--------~~A~~rgl~~~~~~~d~~---~--- 273 (372)
-.|+|+|-|.|. +...|+.+ ++....||+++. +...+ ++|+..|++..+...-.. .
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 579999999985 34444444 567899999999 66555 456666888776653111 1
Q ss_pred --CCCCCCCccEEEeccccccccc------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 274 --LPYPSLSFDMVHCAQCGIIWDK------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 274 --lp~~~~sFDlV~~~~~~~~~~~------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+...++..=+|-|...+++..+ ++...+....|-|+|.-. ++.+...+.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv-v~~E~ea~~ 248 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV-VLVEQEADH 248 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE-EEEeecCCC
Confidence 2233343334445555555542 233456677778999944 444444433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.64 Score=45.04 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.-..+++.+.+...++ ..++|.=+|.|..+..+++.... ..++|+|.++.+++.|+++
T Consensus 6 pVll~Evl~~L~~~~g--------giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPD--------GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred chhHHHHHHhcCcCCC--------CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 4456677777766555 68999999999999999987433 6799999999999998875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.1 Score=37.84 Aligned_cols=67 Identities=15% Similarity=0.018 Sum_probs=46.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEE--eeccCCCCCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN--FISRQLPYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~--~d~~~lp~~~~sFDlV~~ 286 (372)
++|+|||.+-|..+.+++-+|. ..|.+++.++...+..++.--...+.+ ......+-.-+.||+..+
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 7999999999999999998874 458899999999988877411111111 012233333456887764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.9 Score=37.89 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=75.4
Q ss_pred eCCCCcHHHHHHHhcCC--ceeEEEEeeCCHHHHH----------HHHHcCCCeEEEEeeccCCC----CCCCCccEEEe
Q 017377 223 VGCGFGSFGAHLVSLKL--MAVCVAVYEATGSQVQ----------LALERGLPAMIGNFISRQLP----YPSLSFDMVHC 286 (372)
Q Consensus 223 IGCG~G~~~~~L~~~~~--~~~~v~gvD~s~~~v~----------~A~~rgl~~~~~~~d~~~lp----~~~~sFDlV~~ 286 (372)
||=|.=+|+..|+.... .....+..|..+...+ ..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 67777788999988732 2333455666554443 223345555543 3555554 35689999998
Q ss_pred cccccccc-------cc-------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 287 AQCGIIWD-------KK-------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 287 ~~~~~~~~-------~~-------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
++- |.. .+ ...++..+.++|+++|.+.|+...... -..|+ ++.+++..+..+..
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Ccccc-HHHHHHhcCCEEEE
Confidence 853 332 11 124688899999999999999764433 14576 46888888887765
Q ss_pred e
Q 017377 353 Q 353 (372)
Q Consensus 353 ~ 353 (372)
.
T Consensus 150 ~ 150 (166)
T PF10354_consen 150 K 150 (166)
T ss_pred E
Confidence 4
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.94 Score=43.34 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=61.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~~ 291 (372)
.+||..|+| .|..+..+++.. ...++.++.++...+.+++.++...+..-+ ... ....+.+|+|+.....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g~- 242 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVGT- 242 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCCC-
Confidence 678888876 477777777752 244778899999999988777654332111 000 1245679998854211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.++.+.|+++|.++....
T Consensus 243 ------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 243 ------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------HHHHHHHHHHhhcCCEEEEECC
Confidence 2367888999999999997654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.16 Score=46.83 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCc----e-e---EEEEeeCCHHHHHHHHHcCCC-eEEEEeeccCCC--------CCC
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLM----A-V---CVAVYEATGSQVQLALERGLP-AMIGNFISRQLP--------YPS 278 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~----~-~---~v~gvD~s~~~v~~A~~rgl~-~~~~~~d~~~lp--------~~~ 278 (372)
+..+|+|+.+..|+++..|.++-.. . . .|+++|+.+.. .++ +....+|+.... |..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------PI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------PIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------ccCceEEeecccCCHhHHHHHHHHhCC
Confidence 3578999999999999998875211 1 1 27788875432 222 334444444322 455
Q ss_pred CCccEEEecc-----ccccccccHH-----HHHHHHHhcccCCeEEEEE
Q 017377 279 LSFDMVHCAQ-----CGIIWDKKEG-----IFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 279 ~sFDlV~~~~-----~~~~~~~~~~-----~~L~el~rvLkPGG~lvis 317 (372)
..-|+|+|-+ ++|.+.+... .+|.-...+|||||.|+--
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 6899999963 2333322221 3566678899999999854
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.39 Score=45.97 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCCCCccEEEeccc--c-c-------ccc-----ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 276 YPSLSFDMVHCAQC--G-I-------IWD-----KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 276 ~~~~sFDlV~~~~~--~-~-------~~~-----~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+++++||+|++.-- . . .+. +-....+.++.|+|||||.+++..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 56788888888511 0 0 010 111357899999999999999863
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.39 Score=44.68 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=61.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCH----HHHHHHHHcC-CCeEEEEeeccCCCC----CCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG----SQVQLALERG-LPAMIGNFISRQLPY----PSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~----~~v~~A~~rg-l~~~~~~~d~~~lp~----~~~sFDlV~~~~ 288 (372)
.+||-+|+++|+.-....+---....|.+++.|. ..+..|++|. +-.++. |+ +.|. .-.-.|+|++.
T Consensus 158 sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE--DA-rhP~KYRmlVgmVDvIFaD- 233 (317)
T KOG1596|consen 158 SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE--DA-RHPAKYRMLVGMVDVIFAD- 233 (317)
T ss_pred ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec--cC-CCchheeeeeeeEEEEecc-
Confidence 7899999999998888877632334577888875 4466777662 222233 22 2221 11246666654
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..-++....+..+..-.||+||.++++.-.
T Consensus 234 --vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 234 --VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred --CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 122233345667888999999999998653
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.17 E-value=4.8 Score=37.58 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCCeEEEEeeccCCCCC---CCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLPAMIGNFISRQLPYP---SLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~~~~~~~d~~~lp~~---~~sFDlV~~~~~~ 290 (372)
++||=+|=+.-...+..+. + ....|+.+|+++..+++ |.+.|+++.....|. +.|+| .++||++++.-
T Consensus 46 k~il~lGDDDLtSlA~al~-~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~Dl-R~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALT-G-LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDL-RDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp -EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---T-TS---TTTSS-BSEEEE----
T ss_pred CEEEEEcCCcHHHHHHHhh-C-CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecc-cccCCHHHhcCCCEEEeCC--
Confidence 7899999665443322222 2 23568889999999864 556688877776665 34554 37999999862
Q ss_pred cccc-ccHHHHHHHHHhcccCCe-EEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 291 IIWD-KKEGIFLIEADRLLKPGG-YFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 291 ~~~~-~~~~~~L~el~rvLkPGG-~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
.++ +-...++..-...||.-| ..+++-. ... .....|-.++.....++.-+.
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~-~~~-------~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGFT-HKE-------ASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE--TTT---------HHHHHHHHHHHHTS--EEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEEe-cCc-------CcHHHHHHHHHHHHHCCcCHH
Confidence 222 223457888888898766 4444322 211 234667777777777765443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=4.5 Score=37.23 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=73.6
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe--EEEEeeccCCCCC-CCCccEEEeccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGNFISRQLPYP-SLSFDMVHCAQCGI 291 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~--~~~~~d~~~lp~~-~~sFDlV~~~~~~~ 291 (372)
.+.||||--|.+..+|.+.+.. ..+++.|+++.-++.|... ++.- ....+|. ..++. +..+|+|+.+++--
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 4999999999999999998754 5577899999888887654 3322 2222232 22333 34799998874311
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.-...+|.+-..-|+.=-++++. |+.+. ..++.|.....|.+..+.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlILQ-Pn~~~-------------~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLILQ-PNIHT-------------YELREWLSANSYEIKAET 142 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEEC-CCCCH-------------HHHHHHHHhCCceeeeee
Confidence 22234666666666633344444 32222 235677778888887663
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.11 Score=42.43 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=26.9
Q ss_pred CccEEEeccccccc-----ccc-HHHHHHHHHhcccCCeEEEEEeC
Q 017377 280 SFDMVHCAQCGIIW-----DKK-EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 280 sFDlV~~~~~~~~~-----~~~-~~~~L~el~rvLkPGG~lvis~p 319 (372)
.||+|.|..+ .-| .++ ...+++.+.+.|+|||+|++.-.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4899999643 323 222 23689999999999999999754
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.3 Score=49.43 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCeEEEeCCCCcH--HHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-------CCCeEEE-EeeccCCCCCC-CCccEE
Q 017377 216 GVQSVLDVGCGFGS--FGAHLVSLKLMAVCVAVYEATGSQVQLALER-------GLPAMIG-NFISRQLPYPS-LSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~--~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-------gl~~~~~-~~d~~~lp~~~-~sFDlV 284 (372)
.++.++|+|.|.|. +++..+... ..-.++.||.+.+|....... |-+..-. ++--..+|.+. +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34678888887664 444444443 234577899999998765532 1111111 22234566554 459999
Q ss_pred EeccccccccccH--HHHHH-HHHhcccCCeEEEEEeCCCCC
Q 017377 285 HCAQCGIIWDKKE--GIFLI-EADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 285 ~~~~~~~~~~~~~--~~~L~-el~rvLkPGG~lvis~p~~~~ 323 (372)
+|++.+++..... ..+.. -+.+..++||++++..+...-
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 9999888775322 12333 367788999999999876544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.5 Score=45.24 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=69.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEEeeccCC--CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQL--PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------gl~~~~~~~d~~~l--p~~~~sFDlV 284 (372)
.+++||=||-|.|.+....+.+ .....+.-+|++++.++..++- +..+.+.-+|...+ ....++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5689999999999998888877 4556678889999888876653 22233332232111 1347899999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.-.. ....+. ...++..+.+.||+||+++...-
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 98633 222221 12467789999999999998864
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.19 Score=40.95 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEA 249 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~ 249 (372)
.....|||||+|.+.-.|.+.|..+. |+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~---GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGW---GIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcc---cccc
Confidence 35799999999999999888887654 4454
|
; GO: 0008168 methyltransferase activity |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.18 E-value=5 Score=38.16 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=47.0
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC--CCCccEEEec
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP--SLSFDMVHCA 287 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~--~~sFDlV~~~ 287 (372)
+|+|+-||.|.+...+...|+ ..+.++|+++..++..+.+.... ....|...+... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeC
Confidence 589999999999888888774 34788999999998877664332 223344444321 3569999985
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.2 Score=45.96 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcCC-----CeEEEEeeccCCCCCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGL-----PAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rgl-----~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
+..|+=+|.|-|-+....++. -.....+.+++-++.++-..+.+.. .+.+...|+...+-|....|++++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 456888999999876555432 2245778999999998865554432 3666777888888556889999986
Q ss_pred ccccccccH--HHHHHHHHhcccCCeEEEE
Q 017377 289 CGIIWDKKE--GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 289 ~~~~~~~~~--~~~L~el~rvLkPGG~lvi 316 (372)
.+-.+.++. ...|.-+-+.|||+|+.+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 334444433 3589999999999987663
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=2.6 Score=43.84 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCCeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc---------CCC----------
Q 017377 216 GVQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR---------QLP---------- 275 (372)
Q Consensus 216 ~~~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~---------~lp---------- 275 (372)
.+.+|+=+|||.- ..+...++. ....|.++|.++.-.+.+++.|......+.... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3579999999974 455555554 123588999999999999988766332221100 000
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 276 YPS--LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 276 ~~~--~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.+ +.+|+|+..-. ..-...+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999998733 22222343346999999999999987654
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.8 Score=41.46 Aligned_cols=106 Identities=24% Similarity=0.272 Sum_probs=65.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCce---eEEEEeeCCHHHHHHH---HHcCC--CeEEEEeeccCCC---------CCCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMA---VCVAVYEATGSQVQLA---LERGL--PAMIGNFISRQLP---------YPSLS 280 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~---~~v~gvD~s~~~v~~A---~~rgl--~~~~~~~d~~~lp---------~~~~s 280 (372)
.+|||+.+..|+=++.|++..... .-+++-|.+..-+... .++-. ...+...++...| .....
T Consensus 157 ~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (375)
T KOG2198|consen 157 DKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLK 236 (375)
T ss_pred CeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhh
Confidence 799999999999998888763321 2477889887655332 22211 1222222322222 33457
Q ss_pred ccEEEec-----ccc-------cc--cc--------ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 281 FDMVHCA-----QCG-------II--WD--------KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 281 FDlV~~~-----~~~-------~~--~~--------~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
||-|.|- .+. .. |. .-.-.+|..-.++||+||.+|.|+..-++
T Consensus 237 fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 237 FDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred cceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 9999873 100 00 11 11124688889999999999999986665
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.6 Score=42.38 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEe--eccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNF--ISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~--d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+||=+||| .|.++..+++. +. ..++++|.++..++.+++.|....+..- +.....-..+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 678878875 34455555554 32 2477889999999999988865433210 11111111235899886522
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+....+.|++||.+++...
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1256778899999999998765
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.7 Score=37.95 Aligned_cols=84 Identities=25% Similarity=0.252 Sum_probs=60.9
Q ss_pred CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-------C-CCCCCccEEEeccccccccccH
Q 017377 226 GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-------P-YPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 226 G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-------p-~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
|.|.++..+++... ..++++|.++.-.+.+++.|....+. .... . .+.+.+|+|+-.-. .
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~---~~~~~~~~~i~~~~~~~~~d~vid~~g------~- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVID---YSDDDFVEQIRELTGGRGVDVVIDCVG------S- 68 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEE---TTTSSHHHHHHHHTTTSSEEEEEESSS------S-
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccccc---ccccccccccccccccccceEEEEecC------c-
Confidence 46888888888733 67889999999999999988444332 2221 1 23457999985422 1
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...+.+...+|+|||.+++.....
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 237888999999999999998765
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.14 Score=51.15 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=52.5
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhcccc
Q 017377 12 ILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLS 77 (372)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~ 77 (372)
++.|.++-... .+.+.=+|..+|++.+|+=|||+-|++. ..|..+|||.|++.++..+..+-.++
T Consensus 22 ~~~p~~~k~~~-~~~i~eva~~~gv~~~tlr~~e~~~~~~~~~r~~~g~r~yt~~di~~l~~~~~~~ 87 (387)
T TIGR03453 22 LFPPNARKTLR-KFTSGEVAKLLGVSDSYLRQLSLEGKGPEPETLSNGRRSYTLEQINELRRHLAQR 87 (387)
T ss_pred cCCCccccccc-cCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCceeeCHHHHHHHHHHHHhc
Confidence 45566553333 4677779999999999999999888765 57889999999999999999887664
|
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.2 Score=41.52 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe---EEEEeeccCCC-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA---MIGNFISRQLP-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~---~~~~~d~~~lp-~~~~sFDlV~~~~~ 289 (372)
-+|||.=+|+|.=+...+........|+.-|+|+++++.++++ ++.. .+...|+..+= .....||+|-.-
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD-- 128 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD-- 128 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE---
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC--
Confidence 5899999999998888777632346788999999999888765 4443 44444544332 246789999753
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+ -.+..+|....+.++.||++.++...
T Consensus 129 --Pf-GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 --PF-GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ---S-S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred --CC-CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 22 22334899999999999999998653
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.2 Score=47.54 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEE---------------eecc---CCCC-C
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN---------------FISR---QLPY-P 277 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~---------------~d~~---~lp~-~ 277 (372)
.++|||+|||.|.-+......+. ..+...|.+...++.- +++..... .... +.-+ .
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~---t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLV---TLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred CceeEecCCcccccchhhhhhcc--ceeeeEecchhheeee---cccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 37899999999998888877653 4566678777665211 11111000 0000 0011 1
Q ss_pred CC--CccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 278 SL--SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 278 ~~--sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+ .||+|.++..++........+......+++++|.+++..-....
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yF 239 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYF 239 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhcc
Confidence 12 68888888766655322222356677788999999887554333
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.42 E-value=3.4 Score=37.30 Aligned_cols=107 Identities=11% Similarity=-0.001 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~ 285 (372)
+++.|+|+|.-.|..+...++. ......+.++|++-...+-+..+-..+.+...+..+.. ...+.--+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 3478999999888766665543 22446788889887665544443444556555443322 1112123334
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|-.+-+++ +..-+.|+-..++|..|-|+++.+.+.+.
T Consensus 149 ilDsdHs~-~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 149 ILDSDHSM-EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EecCCchH-HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 44443333 55555677788999999999999887765
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=87.48 E-value=2.3 Score=38.22 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=31.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
..|||.=||+|+.+......+ ....|+|+++..++.|.+
T Consensus 193 diVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred eeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 689999999999988877765 448899999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.27 E-value=0.92 Score=41.76 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC----CCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ----LPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~----lp~~~~sFDlV~~~ 287 (372)
..|+|.-||.|..+...+.+++. |.++|+++.-+..|+.+ |++ +.+.++|..+ +.+...-+|+|..+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 57999999999999999888654 77899999999988876 665 4455555322 33444446677655
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.88 Score=40.87 Aligned_cols=101 Identities=22% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC--------CCCCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ--------LPYPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~--------lp~~~~sFDlV~~~~ 288 (372)
..+|||+||.+|+++....++.....-+.|+|+-. ..--.|....... |..+ -..|+...|+|++-.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~-dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGN-DVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCccccccc-ccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 37999999999999988887742334478888732 1111233222221 2211 014678899999852
Q ss_pred ccccc-----cccH------HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGIIW-----DKKE------GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~~~-----~~~~------~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. ..- .+.. ..+|.-....++|+|.++.-......
T Consensus 145 a-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 145 A-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred C-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 1 111 1111 12344445678899999988765443
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.85 E-value=6.7 Score=35.76 Aligned_cols=94 Identities=30% Similarity=0.302 Sum_probs=60.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~~ 291 (372)
.+||-+|+|. |..+..+++.. ...+++++.++...+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~-- 210 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVG-- 210 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCC--
Confidence 7899999985 66666666652 255788899988888887766432221110 000 112467999986522
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ..+..+.+.|+++|.++......
T Consensus 211 ----~~-~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 211 ----GP-ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ----CH-HHHHHHHHhcccCCEEEEEccCC
Confidence 10 25667788999999999876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.66 E-value=7.3 Score=37.74 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=57.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=.|+| .|.++..+++. ....+++++.++.-.+.+++.|....+.. ... ..+.+|+++-..+ .
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~------~ 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP------A 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC------c
Confidence 688888875 34455555554 22357778999988999998887643321 111 1245887654322 1
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|++||.+++...
T Consensus 234 -~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEEEec
Confidence 1367888899999999998764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=14 Score=34.87 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhc----CCceeEEEEeeCCHHHHHHHHHc------CCCeEEEEeec----cCCCCCCCCcc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGSQVQLALER------GLPAMIGNFIS----RQLPYPSLSFD 282 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~----~~~~~~v~gvD~s~~~v~~A~~r------gl~~~~~~~d~----~~lp~~~~sFD 282 (372)
..+.+|+|.|+..=++.|++. +. ..+++++|+|...+....+. ++++.-.+.+. ..+| ...--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 378999999999888777664 32 36789999999988543221 33333222221 1222 22222
Q ss_pred EE-EeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 283 MV-HCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 283 lV-~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++ +....+-.+.+++ ..+|..+...|+||-++++-+-..+.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 22 2223334444443 46899999999999999987654443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=85.52 E-value=2.7 Score=43.62 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec---------cCC--C--------C
Q 017377 217 VQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---------RQL--P--------Y 276 (372)
Q Consensus 217 ~~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~---------~~l--p--------~ 276 (372)
+.+|+=+|+|.- ..+..++.. ....++.+|.++...+.+++.|......+... ..+ + +
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 479999999975 555555544 22347889999998888887665432221100 000 0 1
Q ss_pred C--CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEE
Q 017377 277 P--SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 277 ~--~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lv 315 (372)
+ -..+|+|++. +++.-.+.+..+.+++.+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1 2569999876 444444455557888999999999987
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.06 E-value=2 Score=39.98 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=59.5
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCC
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP 263 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~ 263 (372)
+..+...|++.+++.+....+. .. ....++||||-|.--.--.+ ...--..+++|.|+++..++.|+.. ++.
T Consensus 53 pvPgRAdYih~laDLL~s~~g~-~~-~~~i~~LDIGvGAnCIYPli-G~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 53 PVPGRADYIHHLADLLASTSGQ-IP-GKNIRILDIGVGANCIYPLI-GVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred CCCChhHHHHHHHHHHHhcCCC-CC-cCceEEEeeccCcccccccc-cceeecceeecCccCHHHHHHHHHHHHcCcchh
Confidence 4466788999999999766551 11 22358999998865432222 1111246789999999999888754 222
Q ss_pred e--EEEEe-ecc----CCCCCCCCccEEEeccccc
Q 017377 264 A--MIGNF-ISR----QLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 264 ~--~~~~~-d~~----~lp~~~~sFDlV~~~~~~~ 291 (372)
. .+..- +.. .+--..+.||+++|+--++
T Consensus 130 ~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 130 RAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred hheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 1 11100 111 1111257899999996544
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=84.93 E-value=9.6 Score=36.37 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=57.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||-+|+| .|..+..+++. ....++.++.++...+.+++.+....+.........-..+.+|+|+....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-------
Confidence 678888886 66666666655 22457778889988888876664433221110000001246898885421
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+.++.+.|+++|.++....
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEECC
Confidence 01267788899999999987653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=84.12 E-value=8.6 Score=37.36 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
..+++.+.+...++ ..++|.=-|.|..+..+++.... ..++|+|-++.+++.|+++
T Consensus 8 ll~Evl~~L~~~~~--------g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 8 LLKEVLEALNPKPG--------GIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER 63 (310)
T ss_dssp THHHHHHHHT--TT---------EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC
T ss_pred cHHHHHHhhCcCCC--------ceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH
Confidence 45667777776555 68999999999999999987544 7899999999999999865
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.00 E-value=8.1 Score=37.73 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=64.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC---------CCCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---------PYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l---------p~~~~sFDlV~~~ 287 (372)
.+||=+|+|+ |..+...++. +-...|+.+|.++.-++.|++-|..+.......... -+....||..+-.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 7899999997 4444444443 344678889999999999999777655432221101 1223458888854
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.. .+. .++.....+|+||.+++.+.....
T Consensus 250 sG-~~~------~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 250 SG-AEV------TIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred cC-chH------HHHHHHHHhccCCEEEEeccCCCc
Confidence 22 222 455567789999999988765544
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.62 E-value=7 Score=37.73 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=52.6
Q ss_pred ccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 190 FDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 190 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
+....-+.+++.+.+...++ ...+|.=-|.|..+..++++.....+++++|-++.+++.|+++
T Consensus 5 ~~HipVLl~E~i~~L~~~~~--------giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPD--------GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred CCccchHHHHHHHhcccCCC--------cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 34445567788888877776 7899999999999999999976667799999999999999886
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=83.54 E-value=9.8 Score=36.51 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=57.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee--ccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI--SRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d--~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+||-.|||. |..+..+++. |. ..+++++.++...+.+++.+....+..-+ ...+....+.+|+|+....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 6788888764 5566666654 32 14677888888888777766543221100 1112112245899986422
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 241 -~--~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 -A--PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -C--HHHHHHHHHHHhcCCEEEEEec
Confidence 1 1257788999999999997653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.48 E-value=2.7 Score=42.44 Aligned_cols=62 Identities=27% Similarity=0.274 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
..|..-+...+..... -...+..-|||||.|||.++...+..+. -.+++++.-..|++.|++
T Consensus 46 iky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARK 107 (636)
T ss_pred HHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHH
Confidence 3555556555554332 0111224699999999999888777763 348999999999988875
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.38 E-value=12 Score=35.64 Aligned_cols=92 Identities=25% Similarity=0.239 Sum_probs=56.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l----p~~~~sFDlV~~~~~~~ 291 (372)
.+||-+|+| .|..+..+++. +.. .+..++.++...+.+++.+....+. .+.... ..+.+.+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 688888865 24455555554 322 2566788888888887777652221 111110 113467999986521
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 236 ---~--~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 ---V--PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ---C--hHHHHHHHHHHhcCCEEEEEec
Confidence 1 1367788899999999987654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=4.7 Score=38.49 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=34.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
..|||-=||+|+.+......+ -.+.|+|+++..++.|++|
T Consensus 210 D~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 210 DIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 689999999999888777665 4488999999999999988
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.73 E-value=4.9 Score=39.78 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEEeeccCCCCC-CCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLPYP-SLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~~~~~~~d~~~lp~~-~~sFDlV~~~~~~ 290 (372)
+.+|||.=+|+|.=+..++...... .++.-|+|+.+++.++++ +.+....+.|+..+=.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC---
Confidence 3789999999999888887763332 678899999999998876 22333333333322211 3678887432
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+. .+.-++....+..+.||++.++......
T Consensus 129 -PFG-SPaPFlDaA~~s~~~~G~l~vTATD~a~ 159 (380)
T COG1867 129 -PFG-SPAPFLDAALRSVRRGGLLCVTATDTAP 159 (380)
T ss_pred -CCC-CCchHHHHHHHHhhcCCEEEEEeccccc
Confidence 232 2223888888899999999998665443
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=82.73 E-value=17 Score=34.68 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=59.0
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|. |.|.++..+++.. ...+++++.++...+.+++.|....+..-+.... ....+.+|+|+-.-.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 67887774 5778888887762 2457778888888999988776543321110000 012346898885421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|++||.++....
T Consensus 217 -------~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 -------GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -------HHHHHHHHHHhCcCcEEEEecc
Confidence 1245778899999999997653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.56 E-value=8 Score=37.61 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=55.2
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=+|||. |.++..++++-.-...++++|.++.-++.+++.+.. .. . ..+. ....+|+|+-.-.- ..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~--~~-~--~~~~-~~~g~d~viD~~G~----~~ 234 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET--YL-I--DDIP-EDLAVDHAFECVGG----RG 234 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce--ee-h--hhhh-hccCCcEEEECCCC----Cc
Confidence 6899899863 445555555311123577889999888888753322 11 1 1111 11248988854220 11
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+.+..++|++||.+++...
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 12367888999999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=81.14 E-value=9 Score=37.31 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=56.8
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeC---CHHHHHHHHHcCCCeEEEEeeccCC--CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEA---TGSQVQLALERGLPAMIGNFISRQL--PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~---s~~~v~~A~~rgl~~~~~~~d~~~l--p~~~~sFDlV~~~~~~~ 291 (372)
.+||=+|+|. |.++..+++.. ...+++++. ++.-.+.+++.|... .+...... ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC--
Confidence 6788888863 66666666652 234666765 678888888877653 21111110 001246898886522
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..++|++||.+++...
T Consensus 248 ---~--~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ---V--PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---C--HHHHHHHHHHccCCcEEEEEec
Confidence 1 1267788999999999988664
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.05 E-value=5.3 Score=39.76 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=31.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~ 258 (372)
+...|.|+|.|.|.++..|.-+ ....|.++|.|....+.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 4578999999999999888755 2366889999976665443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 9e-13
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA 257
++ ++ + + VLDVGCG G L + + + V + + QV A
Sbjct: 51 DEMIALLDVRSG--------DRVLDVGCGIGKPAVRLATARDVRV-TGI-SISRPQVNQA 100
Query: 258 LER----GLPAMI----GNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLK 309
R GL + + LP+ SFD V + + L E R+L+
Sbjct: 101 NARATAAGLANRVTFSYADA--MDLPFEDASFDAVWALESLHHMPDRGR-ALREMARVLR 157
Query: 310 PGGYFVLTSPESKPRGSSSSRK 331
PGG + + ++
Sbjct: 158 PGGTVAIADFVLLAPVEGAKKE 179
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV----QLALERGLPAMI----GNF 269
+ D+GCG G L + V + + + A + GL + G+
Sbjct: 48 SLIADIGCGTGGQTMVLA--GHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105
Query: 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
LP+ + D++ + G L E + LK GGY ++
Sbjct: 106 --DDLPFRNEELDLIWSEGAIYNIGFERG--LNEWRKYLKKGGYLAVS 149
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-11
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL------ALERGLPAMI 266
L + D+GCG G L + + + A++ +
Sbjct: 44 LTDD-AKIADIGCGTGGQTLFLAD-YVKGQITGI---DLFPDFIEIFNENAVKANCADRV 98
Query: 267 ----GNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
G+ LP+ + D++ + G + E + LK GG+ ++
Sbjct: 99 KGITGSM--DNLPFQNEELDLIWSEGAIYNIGFERG--MNEWSKYLKKGGFIAVS 149
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR 272
G VL+ GCG G+ L A ++ + + ++ A E I N
Sbjct: 35 YPPG-AKVLEAGCGIGAQTVILAKNNPDAEITSI-DISPESLEKARENTEKNGIKNVKFL 92
Query: 273 Q-----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
Q LP+ SFD + E L ++LKPGG +
Sbjct: 93 QANIFSLPFEDSSFDHIFVCFVLEHLQSPEE-ALKSLKKVLKPGGTITVI 141
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-10
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 22/112 (19%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQL------ALERGLPA--MI 266
VLD+ CG G F L +E G S+ + A R ++
Sbjct: 40 GKVLDLACGVGGFSFLLED--------YGFEVVGVDISEDMIRKAREYAKSRESNVEFIV 91
Query: 267 GNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLT 317
G+ R+L + +FD V + ++ E E R+LKP G F++
Sbjct: 92 GDA--RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Query: 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGS--------FGAHLVSLKLMAVCVAVYEA 249
R + + LQ LD+G G+G FG + L + V
Sbjct: 65 RTDEWLASELAMTGVLQRQ-AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKR--N 121
Query: 250 TGSQVQLALERGLPAMI----GNFISRQLPYPSLSFDMVHCAQCGI-IWDKKEGIFLIEA 304
+ + GL I G+F ++P S+D + + DK + E
Sbjct: 122 E----EYNNQAGLADNITVKYGSF--LEIPCEDNSYDFIWSQDAFLHSPDKLK--VFQEC 173
Query: 305 DRLLKPGGYFVLT 317
R+LKP G +T
Sbjct: 174 ARVLKPRGVMAIT 186
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-10
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPS 278
VLD+GCG G F + ++ V + ++ E + + I P
Sbjct: 44 RVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKFC-EGKFNVVKSDAIEYLKSLPD 99
Query: 279 LSFDMVHCAQCGI--IWDKKEGIFLIEADRLLKPGGYFVLTSP 319
D V + + + ++ L +K Y V+ SP
Sbjct: 100 KYLDGVMISHF-VEHLDPERLFELLSLCYSKMKYSSYIVIESP 141
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 7e-10
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI 270
+ ++ + VLD+GC G+ GA + + EA + A E+ ++G+
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAIKENG--TRVSGI-EAFPEAAEQAKEKLDHVVLGDIE 83
Query: 271 SRQLPYPSLSFDMVHCAQCGIIWDKKE-----GIFLIEADRLLKPGGYFVLTSP 319
+ +PY FD V D E + + +K G + + P
Sbjct: 84 TMDMPYEEEQFDCVIF------GDVLEHLFDPWAVIEKVKPYIKQNGVILASIP 131
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 8e-10
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG-----SQVQLALERGLPAM 265
++++ VLDVGCG G L Y+A G +Q ERG
Sbjct: 49 QYVKKE-AEVLDVGCGDGYGTYKLSR--------TGYKAVGVDISEVMIQKGKERGEGPD 99
Query: 266 IGNFI---SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT--SPE 320
+ +FI LP+ + F+ + ++ L E R+LK GY + P
Sbjct: 100 L-SFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLR-ALNEIKRVLKSDGYACIAILGPT 157
Query: 321 SKPR 324
+KPR
Sbjct: 158 AKPR 161
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-09
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 36/163 (22%)
Query: 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGS--------FGAHLVSL 237
+ + G + +++I I L + VLD+G G G +GAH +
Sbjct: 33 ENYISSGGLEATKKILSDIELNEN--------SKVLDIGSGLGGGCMYINEKYGAHTHGI 84
Query: 238 KLMAVCVAVYEATGSQVQLALER-GLPAMI----GNFISRQLPYPSLSFDMVHC--AQCG 290
+ + V +A ER I + +P +FD+++ A
Sbjct: 85 DI----------CSNIVNMANERVSGNNKIIFEANDI--LTKEFPENNFDLIYSRDAILA 132
Query: 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNK 333
+ + K + + LKP G ++T + + + +
Sbjct: 133 LSLENKNK-LFQKCYKWLKPTGTLLITDYCATEKENWDDEFKE 174
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-09
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 20/135 (14%)
Query: 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV 254
Y +MI E+ + ++DVGCG G+ + + + + + +
Sbjct: 20 SYPSDFYKMI-----DEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMI 74
Query: 255 QLA--LERGLPAMIGNFISRQ-----------LPYPSLSFDMVHCAQCGIIWDKKEGIFL 301
+ A ++ G P N + DM+ +C +D ++ F
Sbjct: 75 KTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEK--FQ 132
Query: 302 IEADRLLKPGGYFVL 316
A L+ G +
Sbjct: 133 RSAYANLRKDGTIAI 147
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+++G G G F + + + V E + ++A +RG+ + G LP
Sbjct: 49 GRGVEIGVGTGRF------AVPLKIKIGV-EPSERMAEIARKRGVFVLKGTA--ENLPLK 99
Query: 278 SLSFDMVHCAQCGI--IWDKKEGIFLIEADRLLKPGGYFVLTSP 319
SFD I + D + L EA R+LK GGY ++
Sbjct: 100 DESFDFALMVT-TICFVDDPER--ALKEAYRILKKGGYLIVGIV 140
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 21/112 (18%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQL------ALERGLPA--MI 266
++VLD G G L + Y+ G S +QL + E
Sbjct: 25 KTVLDCGAGGDLP-----PLSIFV--EDGYKTYGIEISDLQLKKAENFSRENNFKLNISK 77
Query: 267 GNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLT 317
G+ R+LP+ S V+ K + + E R+LKPGG +
Sbjct: 78 GDI--RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN 127
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 4e-09
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPY 276
+ D+G G G + L + L V E + Q A+ + G + L
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGY--AENLAL 90
Query: 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
P S D V + E E R+++ G +LT
Sbjct: 91 PDKSVDGVISILAIHHFSHLEK-SFQEMQRIIRDGTIVLLT 130
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 5e-09
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQLPY 276
LD G G G +L L + + E ++ A +G FI
Sbjct: 97 ALDCGAGIGRITKNL--LTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL 154
Query: 277 PSLSFDMVHCAQCGIIWDKKEGI-FLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSL 335
P ++D++ I + + F + L P GY S +++ SL
Sbjct: 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSL 214
Query: 336 LKVMEEFTE 344
+ +
Sbjct: 215 TRSDIHYKR 223
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFISRQLPYP 277
+LDVG G G + HL SL + E V+LA + + G L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVTFHHGTI--TDLSDS 99
Query: 278 SLSFDMVHCAQCGI-IWDKKEGIFLIEADRLLKPGGYFVLT 317
+ + I + + L+ ++ GG +++
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMS 140
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
++D GCG G + +L+ C+ + ++ E+ ++I +S P
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFATKLYCI---DINVIALKEVKEK-FDSVIT--LSDPKEIP 72
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT--SPESKPRGSSSSRK--NK 333
S D + A D K+ + E R+LK G ++ E+ G S + K
Sbjct: 73 DNSVDFILFANSFHDMDDKQH-VISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEK 131
Query: 334 SLLKVMEEFT 343
+ F
Sbjct: 132 DYMGWFSNFV 141
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNF 269
L AG +L++GCG G +++ + + A R G P F
Sbjct: 39 GELPAG-AKILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLF 94
Query: 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320
QL ++D V C + + E L R LKPGG F +
Sbjct: 95 --HQLDAID-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 4e-08
Identities = 43/331 (12%), Positives = 91/331 (27%), Gaps = 91/331 (27%)
Query: 12 ILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLD-FVTSSSKPD---IYSSYRRLKEQAA 67
I+ +S L L L S + FV + + + S + + Q +
Sbjct: 54 IIMSKDAVSGTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 68 VD---YLELRTLSLGTTRPKELDLCGKERENFVPCYNVS-ANLLAGFKEG-EEFDRH--- 119
+ Y+E R + F YNVS ++ E
Sbjct: 107 MMTRMYIEQRDRLYNDNQV------------FAK-YNVSRLQPYLKLRQALLELRPAKNV 153
Query: 120 --CGMSGLGDRCLVRPP-KDYKIPLRWPAGRDVIW------------------------- 151
G+ G G + YK+ + + W
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 152 --SANVKITKDQFLSSGSMTKRL-MLLEENQIAFHSEDGLVFDGVKDYSRQIAEMIGLG- 207
++ + + L S+ L LL+ + LV V++ + L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLNVQN--AKAWNAFNLSC 266
Query: 208 ---------TDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAV------YEA-TG 251
++FL A + + + + L+ + E T
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTT 325
Query: 252 SQVQLALERGLPAMIGNFISRQLPYPSLSFD 282
+ +L++ + I + ++ + ++ D
Sbjct: 326 NPRRLSI---IAESIRDGLATWDNWKHVNCD 353
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 8e-08
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-----L 274
L++G G G L++ + + +A + +++ ++ + + Q +
Sbjct: 43 FLELGVGTGRIALPLIARGYRYIAL---DADAAMLEVFRQK-IAGVDRKVQVVQADARAI 98
Query: 275 PYPSLSFDMVHCAQCGIIW--DKKEGIFLIEADRLLKPGGYFVLT 317
P P S V D + L EA R+LKPGG +
Sbjct: 99 PLPDESVHGVIVVH-LWHLVPDWPKV--LAEAIRVLKPGGALLEG 140
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 9e-08
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 23/144 (15%)
Query: 189 VFDGV-KDYSRQIAEMIGLGTD-------SEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM 240
F + + Y +G L G +S+L+VG G G + L + +
Sbjct: 2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPG-ESLLEVGAGTGYWLRRLPYPQKV 60
Query: 241 AVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW--DKK 296
V E + + + + R + LP+P SFD+V + + D +
Sbjct: 61 GV-----EPSEAMLAVGRRRAPEATWVRAW--GEALPFPGESFDVVLLFT-TLEFVEDVE 112
Query: 297 EGIFLIEADRLLKPGGYFVLTSPE 320
L+EA R+L+PGG V+ E
Sbjct: 113 RV--LLEARRVLRPGGALVVGVLE 134
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 9e-08
Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 41/168 (24%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG-----SQVQLALERGLPAM 265
E+L+ VLD+G G G + L +E +++A E+G+ +
Sbjct: 50 EYLKNP-CRVLDLGGGTGKWSLFLQE--------RGFEVVLVDPSKEMLEVAREKGVKNV 100
Query: 266 I-GNFISRQLPYPSLSFDMVHCAQCGIIW---DKKEGIFLIEADRLLKPGGYFVLTSPES 321
+ + LP+PS +F+ V A ++ +K + E R+L P G + T
Sbjct: 101 VEAK--AEDLPFPSGAFEAV-LALGDVLSYVENKDKA--FSEIRRVLVPDGLLIATVD-- 153
Query: 322 KPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCY 369
+ +++ EK W I + F+ +T
Sbjct: 154 ------------NFYTFLQQMIEKDAWDQITR----FLKTQTTSVGTT 185
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF---ISRQL 274
+ VLD+GCG G L V V + + V A G + ++
Sbjct: 54 ERVLDLGCGEGWLLRALA--DRGIEAVGV-DGDRTLVDAARAAGAGEVHLASYAQLAEAK 110
Query: 275 PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
+D++ ++ L LL PGG V+
Sbjct: 111 VPVGKDYDLICANF-ALLHQDIIE-LLSAMRTLLVPGGALVIQ 151
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 20/139 (14%)
Query: 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVA 245
L + I G+ + +D+G G G+ L K +
Sbjct: 22 KTLFAPIYPIIAENIINRFGITAGT---------CIDIGSGPGALSIAL--AKQSDFSIR 70
Query: 246 VYEATGSQVQLALERGLPAMIGNFIS------RQLPYPSLSFDMVHCAQCGII-WDKKEG 298
+ + ++AL+ A + + I +P D++ + W+
Sbjct: 71 ALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSR-GSVFFWEDVAT 129
Query: 299 IFLIEADRLLKPGGYFVLT 317
E R+LK GG +
Sbjct: 130 -AFREIYRILKSGGKTYIG 147
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ---- 273
VLD+G G G + C+ V +AT V++A + N +Q
Sbjct: 23 HRVLDIGAGAGHTALAF--SPYVQECIGV-DATKEMVEVASSFAQEKGVENVRFQQGTAE 79
Query: 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
LP+P SFD++ C + + E R+LK G F+L
Sbjct: 80 SLPFPDDSFDIITCRYAAHHFSDVRK-AVREVARVLKQDGRFLL 122
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLALER----GLPAMIGNFIS 271
+LD GCG G G +L ++ G + + + ++G+
Sbjct: 49 KILDAGCGQGRIGGYLSKQG--------HDVLGTDLDPILIDYAKQDFPEARWVVGDL-- 98
Query: 272 RQLPYPSLSFDMVHCAQCGIIW---DKKEGIFLIEADRLLKPGGYFVLTSPESK 322
FD++ A ++ + L R L G V+ +
Sbjct: 99 SVDQISETDFDLIVSA-GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR 151
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQL 274
++D+GCGFG F A V + + + A G I + +L
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGPDTGI-TYERADLDKL 101
Query: 275 PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
P SFD+ + + + + + + L PGG+FV +
Sbjct: 102 HLPQDSFDLAYSSL-ALHYVEDVARLFRTVHQALSPGGHFVFS 143
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 19/114 (16%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL------ERGLPAMI 266
+++D GCG G + + V T S Q E + +
Sbjct: 115 AGPD-DTLVDAGCGRGGSMVMAHR-RFGSRVEGV---TLSAAQADFGNRRARELRIDDHV 169
Query: 267 ----GNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
N P+ + + + D + E R LK GG +V
Sbjct: 170 RSRVCNM--LDTPFDKGAVTASWNNESTMYVDLHD--LFSEHSRFLKVGGRYVT 219
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQL 274
++VLD+GCGFG + A V + + + A + ++ + +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTTSPVV-CYEQKAIEDI 102
Query: 275 PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
++++V + + + + LK G F+ +
Sbjct: 103 AIEPDAYNVVLSSL-ALHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-07
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGN 268
E L +VLD+GCG G + + + ++ A +R + + +
Sbjct: 80 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV-AIKAAAKRYPQVTFCVAS 138
Query: 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323
S +LP+ S D + + E R++KPGG+ + +P +
Sbjct: 139 --SHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPGGWVITATPGPRH 183
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 21/142 (14%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR 272
G +VLD+GCG G L V + +Q+++A + F S
Sbjct: 81 SLEG-ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
Query: 273 -------------------QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGY 313
P S D+V + K +F E R+L+ GG
Sbjct: 140 SRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALF-KEIHRVLRDGGE 198
Query: 314 FVLTSPESKPRGSSSSRKNKSL 335
+ + R S +++++ L
Sbjct: 199 LYFSDVYADRRLSEAAQQDPIL 220
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ---- 273
+ VLDV G G + VA + T +++A Q
Sbjct: 39 EEVLDVATGGGHVANAF--APFVKKVVAF-DLTEDILKVARAFIEGNGHQQVEYVQGDAE 95
Query: 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
+P+ F +V C + F+ EA R+LK GG +L
Sbjct: 96 QMPFTDERFHIVTCRIAAHHFPNPAS-FVSEAYRVLKKGGQLLL 138
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 21/143 (14%)
Query: 213 LQAGVQSVLDVGCGFGSFG---AHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF 269
L+ G +VLDVG G G + + +V K + + V A E+ + N
Sbjct: 35 LKEG-MTVLDVGTGAGFYLPYLSKMVGEKGKVYAI---DVQEEMVNYAWEKVNKLGLKNV 90
Query: 270 ISRQ-----LPYPSLSFDMVHCAQCGI--IWDKKEGIFLIEADRLLKPGGYFVL--TSPE 320
+ +P P + D + A + + + FL E R+ KP Y + E
Sbjct: 91 EVLKSEENKIPLPDNTVDFIFMA-FTFHELSEPLK--FLEELKRVAKPFAYLAIIDWKKE 147
Query: 321 SKPRGSSSSRK--NKSLLKVMEE 341
+ +G + ++E+
Sbjct: 148 ERDKGPPPEEVYSEWEVGLILED 170
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 22/120 (18%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLAL------ERG 261
L+ G V V CG+ S L L + G L
Sbjct: 114 RHLRPG-CVVASVPCGWMS-----ELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA 167
Query: 262 LPAMIGNFI---SRQLPYPSLSFDMVHCAQCGIIWDKKEGI--FLIEADRLLKPGGYFVL 316
L I + +L +D++ I + + LKPGG V
Sbjct: 168 LAGQI-TLHRQDAWKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLALERGLPAMIGNFIS--- 271
++D GCG+G L LM + + TG + LA R L ++
Sbjct: 24 VHIVDYGCGYGYL-----GLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 78
Query: 272 ---RQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
++ +D+ C ++ L + +K GG + P
Sbjct: 79 GDATEIELND-KYDIAICHA-FLLHMTTPETMLQKMIHSVKKGGKIICFEP 127
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 22/108 (20%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLA-----LERGLPAMIGNFI 270
+VL+ G G G+ L+ A G S+ L + G+F
Sbjct: 48 NVLEFGVGTGNLTNKLLL--------AGRTVYGIEPSREMRMIAKEKLPKEFSITEGDF- 98
Query: 271 SRQLPYPSLSFDMVHCAQCGIIW--DKKEGIFLIEADRLLKPGGYFVL 316
P+ S D + D ++ + + + +LL GG V
Sbjct: 99 -LSFEVPT-SIDTIVSTY-AFHHLTDDEKNVAIAKYSQLLNKGGKIVF 143
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPA---MIGNFISRQL 274
VL++ G G + HL L + + + + A GL +
Sbjct: 48 GDVLELASGTGYWTRHLSGLADRVTAL---DGSAEMIAEAGRHGLDNVEFRQQDL--FDW 102
Query: 275 PYPSLSFDMVHCAQCGIIW--DKKEGIFLIEADRLLKPGGYFVLT 317
P +D V A + D + F + PGG
Sbjct: 103 T-PDRQWDAVFFAHW-LAHVPDDRFEAFWESVRSAVAPGGVVEFV 145
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Query: 210 SEFLQAGVQ-----SVLDVGCGFGSFGAHLVSLKLMAVCV-AVYEATGSQVQLALERGLP 263
++FL + +L + G G L SL V QLA E+G+
Sbjct: 18 NDFLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVK 77
Query: 264 AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT--SPES 321
+ +++ + C + ++ ++ + + LKPGG F+L +PE
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLY-PKVYQGLKPGGVFILEGFAPEQ 136
Query: 322 KPRGSSSSRKNKSLLK 337
+ + L K
Sbjct: 137 LQYNTGGPKDLDLLPK 152
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-06
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFIS-- 271
G LD G G G L L + V + + T + A + N+
Sbjct: 79 GTSCALDCGAGIGRITKRL--LLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 136
Query: 272 -RQLPYPSLSFDMVHCAQCGIIWDKKEGI-FLIEADRLLKPGGYFVLTSPESKPRGSSSS 329
+ S+D++ + FL L+P G V+ G
Sbjct: 137 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN-MAQEGVILD 195
Query: 330 RKNKSLLKVMEEFTE 344
+ S+ + ++
Sbjct: 196 DVDSSVCRDLDVVRR 210
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 29/121 (23%)
Query: 210 SEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG-----SQVQLALERGLPA 264
S L VL+ GCG G A ++LA A
Sbjct: 43 SRLLTPQ-TRVLEAGCGHGPDAARFGP--------QAARWAAYDFSPELLKLARANAPHA 93
Query: 265 MIGNFISR----QLPYPSLS-FDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ +LP + F ++ + G ++ L P +F+ P
Sbjct: 94 ---DVYEWNGKGELPAGLGAPFGLIVSRR-GPTS------VILRLPELAAPDAHFLYVGP 143
Query: 320 E 320
Sbjct: 144 R 144
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 9e-06
Identities = 30/124 (24%), Positives = 40/124 (32%), Gaps = 30/124 (24%)
Query: 212 FLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQL------ALERGL 262
+LQ +LD+GCG G L S Y TG + + A GL
Sbjct: 27 YLQED-DEILDIGCGSGKISLELAS--------KGYSVTGIDINSEAIRLAETAARSPGL 77
Query: 263 PAMIGNFIS------RQLPYPSLSFDMVHCAQCGIIW----DKKEGIFLIEADRLLKPGG 312
G L + SFD + K+ + E R+LKPG
Sbjct: 78 NQKTGGKAEFKVENASSLSFHDSSFDFAVMQAF--LTSVPDPKERSRIIKEVFRVLKPGA 135
Query: 313 YFVL 316
Y L
Sbjct: 136 YLYL 139
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 214 QAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ 273
+ V+D+GCG G+ + L+ K V + + S ++ A +R + ++
Sbjct: 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGV-DVSYSVLERAKDRLKIDRLPEMQRKR 85
Query: 274 LPYPSLS----------FDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ S +D + D+ + ++++P
Sbjct: 86 ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 17/116 (14%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL------ERGLPAMI 266
++ G +LD+G G G + S + A E G+ +
Sbjct: 34 MKPG-TRILDLGSGSGEMLCTWAR-DHGITGTGI---DMSSLFTAQAKRRAEELGVSERV 88
Query: 267 GNFIS---RQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+FI + D+ C I G + LKPGG ++ P
Sbjct: 89 -HFIHNDAAGYV-ANEKCDVAACVGATWIAGGFAG-AEELLAQSLKPGGIMLIGEP 141
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 6e-05
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 214 QAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFIS 271
Q+ + V+D+GCG G+ L+ V + + +++A ER L +
Sbjct: 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGV-DVSYRSLEIAQERLDRLRLPRNQWER 85
Query: 272 RQLPYPSL--------SFDMVHCAQCGIIWDKKEGIFLIEA-DRLLKPGGYFVLTSP 319
QL +L +D + D +P ++T+P
Sbjct: 86 LQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI-VIVTTP 141
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 7e-05
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSL 279
V D GCG A + + +A + + +A Q+P
Sbjct: 71 VADFGCGDCRL-ASSIRNPVHCFDLASLDPRVTVCDMA---------------QVPLEDE 114
Query: 280 SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322
S D+ ++ FL EA+R+LKPGG + S+
Sbjct: 115 SVDVAVFCL-SLMGTNIRD-FLEEANRVLKPGGLLKVAEVSSR 155
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 214 QAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR- 272
++ +++D GCG GS L+ + + + + A + + +
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778
Query: 273 ----------QLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319
+ D+ C + ++ + F + L P ++++P
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIVSTP 835
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 21/112 (18%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLAL------ERGLPAMIGN 268
++D CG G+ L G S+ L + + + +
Sbjct: 58 LPLIDFACGNGTQTKFLSQF--------FPRVIGLDVSKSALEIAAKENTAANISYRLLD 109
Query: 269 F--ISRQLPYPSLSFDMVHCAQCGIIW--DKKEGIFLIEADRLLKPGGYFVL 316
+ S D + G +K + LL G L
Sbjct: 110 GLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYL 161
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/144 (17%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 188 LVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVY 247
+ DY + +I LD+ CG G+ +L
Sbjct: 12 KLIRADVDYKKWSDFIIEK---CVENNLVFDDYLDLACGTGNLTENLCPKF--------K 60
Query: 248 EATG---SQVQLAL------ERGLPAMIGNFIS---RQLPYPSLSFDMVHCAQCGI--IW 293
SQ L+ +GL L FD++ C I
Sbjct: 61 NTWAVDLSQEMLSEAENKFRSQGLKP---RLACQDISNLNINR-KFDLITCCLDSTNYII 116
Query: 294 DKKEGI-FLIEADRLLKPGGYFVL 316
D + + LK GG F+
Sbjct: 117 DSDDLKKYFKAVSNHLKEGGVFIF 140
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 19/172 (11%), Positives = 41/172 (23%), Gaps = 25/172 (14%)
Query: 219 SVLDVGCGFGSFGAHLVSLKL-MAVCVAVYEATGSQVQLALER------------GLPAM 265
VL + G G+ ++ + V + ER
Sbjct: 51 KVLAIDFGNGADLEKYFYGEIALLVATDPDA---DAIARGNERYNKLNSGIKTKYYKFDY 107
Query: 266 IGNFISRQL-------PYPSLSFDMVHCAQC--GIIWDKKEGIFLIEADRLLKPGGYFVL 316
I I + F+++ + + L GG ++
Sbjct: 108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLI 167
Query: 317 TSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHC 368
T+ + + +K + K + + IA T+
Sbjct: 168 TTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPM 219
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 28/145 (19%)
Query: 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVA 245
D + ++ +I + + E + V+ VLD+ CG G L
Sbjct: 13 DTIYRRRIERVKAEIDFVEEI--FKEDAKREVRRVLDLACGTGIPTLELAE--------R 62
Query: 246 VYEATG---SQVQLAL------ERGLPAMIGNFIS---RQLPYPSLSFDMVHCAQCGI-- 291
YE G + L + ER L F+ ++ + + FD V I
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKI---EFLQGDVLEIAFKN-EFDAVTMFFSTIMY 118
Query: 292 IWDKKEGIFLIEADRLLKPGGYFVL 316
++ + LKPGG F+
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 18/123 (14%), Positives = 30/123 (24%), Gaps = 20/123 (16%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLALERGLPAMIGNF------ 269
+L +G G G ++S S Q+A + L A N
Sbjct: 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114
Query: 270 ----------ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+D +H Q + + K L LL ++
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVV 173
Query: 320 ESK 322
Sbjct: 174 SGS 176
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 4e-04
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-------GLPAMIGNFI 270
SVLD+GCG G + + A R
Sbjct: 66 DSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS 123
Query: 271 SRQLPYPSLSFDMVHCAQCGI-IWDKKEGI--FLIEADRLLKPGGYFVLTSPESKP 323
+ FD++ + E + R L+PGGYF++T P
Sbjct: 124 YGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV 179
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQL 274
+L +GCG + L V Y + A +P + + + R+L
Sbjct: 44 DRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQL--RWETMDVRKL 101
Query: 275 PYPSLSFDMVHC--------------AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318
+PS SFD+V L E R+L PGG F+ +
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 5e-04
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 10/150 (6%)
Query: 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ 255
++A I G ++ +L +G G+ +H+ + + A+ A +
Sbjct: 55 NKSKLAAAIIKGLKVMPIKRD-SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE 113
Query: 256 L-ALERGLPAMIGNFISRQLPYPSLSFD---MVHCAQCGIIWDKKEGIFLIEADRLLKPG 311
L +I I P + V + + I + A LK G
Sbjct: 114 LLDACAERENII--PILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKG 171
Query: 312 GYFVLTSPESKPRGSSSSRKNKSLLKVMEE 341
GY ++ K R ++ K + K +E
Sbjct: 172 GYGMIA---IKARSIDVTKDPKEIFKEQKE 198
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 30/141 (21%), Positives = 43/141 (30%), Gaps = 24/141 (17%)
Query: 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVA 245
D + KDY R+ A++ L S+LDV CG G HL +
Sbjct: 23 DLVHQGKGKDYHREAADLAAL---VRRHSPKAASLLDVACGTGMHLRHLAD--------S 71
Query: 246 VYEATG---SQ--VQLALERGLPA--MIGNFISRQLPYPSLSFDMVHCAQ---CGIIWDK 295
G S + +A R A G+ R F V C +
Sbjct: 72 FGTVEGLELSADMLAIARRRNPDAVLHHGDM--RDFSLGR-RFSAVTCMFSSIGHLAGQA 128
Query: 296 KEGIFLIEADRLLKPGGYFVL 316
+ L + P G V+
Sbjct: 129 ELDAALERFAAHVLPDGVVVV 149
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 24/156 (15%)
Query: 173 MLLEENQIAFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGA 232
M + N + ++ + + + F + G ++L++G G F +
Sbjct: 2 MTISRNYDQEIKDTA-GHKYAYNFDFDVMHPFMVRAFTPFFRPG--NLLELGSFKGDFTS 58
Query: 233 HLVSLKLMAVCVAVYEATGSQVQLA---LERGLPAMIGNFISRQLPYPSLSFDMVHCAQC 289
L CV EA+ + A L+ G+ + F QLP +D +
Sbjct: 59 RLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQLPR---RYDNIVL--- 109
Query: 290 GIIWD------KKEGIFLIEADRLLKPGGYFVLTSP 319
+ D L GG L P
Sbjct: 110 ---THVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 142
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 18/142 (12%)
Query: 189 VFDGV-KDYSRQIAEMIGL--------GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL 239
FD V Y Q + I + + +LD+G G G A L+
Sbjct: 9 KFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTEN-PDILDLGAGTGLLSAFLMEKYP 67
Query: 240 MAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQLPYPSLSFDMVHCAQCGIIW--D 294
A V + + +++A R + +I + + +DMV A I D
Sbjct: 68 EATFTLV-DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEE-KYDMVVSAL-SIHHLED 124
Query: 295 KKEGIFLIEADRLLKPGGYFVL 316
+ + + +LK G F+
Sbjct: 125 EDKKELYKRSYSILKESGIFIN 146
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 9e-04
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 28/126 (22%)
Query: 208 TDSEFLQA----GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQV------ 254
T SE L+A LD+GCG G +L + Y+ + +
Sbjct: 20 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--------GYDVDAWDKNAMSIANVE 71
Query: 255 QLALERGLP---AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI-EADRLLKP 310
++ L + + L + +D + + + K LI R KP
Sbjct: 72 RIKSIENLDNLHTRVVDL--NNLTFDR-QYDFILSTVVLMFLEAKTIPGLIANMQRCTKP 128
Query: 311 GGYFVL 316
GGY ++
Sbjct: 129 GGYNLI 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.69 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.69 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.69 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.67 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.67 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.67 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.65 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.65 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.65 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.64 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.64 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.64 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.64 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.64 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.64 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.63 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.63 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.62 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.6 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.6 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.6 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.6 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.6 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.59 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.59 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.59 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.59 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.59 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.59 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.59 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.58 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.58 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.58 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.58 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.57 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.57 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.57 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.57 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.56 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.56 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.56 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.55 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.54 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.54 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.54 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.54 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.54 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.54 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.53 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.53 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.53 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.53 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.52 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.52 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.51 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.49 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.48 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.48 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.46 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.46 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.46 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.46 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.46 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.45 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.45 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.45 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.44 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.44 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.43 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.43 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.43 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.43 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.43 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.42 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.42 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.41 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.4 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.4 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.4 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.4 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.4 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.4 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.39 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.39 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.39 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.38 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.38 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.37 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.36 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.36 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.36 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.35 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.35 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.35 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.35 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.35 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.35 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.35 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.34 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.34 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.34 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.34 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.33 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.33 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.33 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.33 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.32 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.32 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.32 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.31 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.31 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.31 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.31 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.31 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.29 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.29 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.28 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.28 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.28 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.28 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.28 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.28 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.27 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.27 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.27 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.26 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.26 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.26 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.26 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.26 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.26 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.25 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.25 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.25 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.25 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.25 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.24 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.24 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.24 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.23 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.23 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.23 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.23 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.23 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.22 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.22 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.22 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.22 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.22 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.21 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.21 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.21 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.19 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.19 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.18 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.18 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.17 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.16 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.16 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.15 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.15 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.15 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.15 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.14 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.13 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.12 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.12 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.12 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.12 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.12 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.1 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.1 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.09 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.09 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.08 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.08 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.08 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.07 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.07 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.06 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.06 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.06 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.06 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.06 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.06 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.05 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.04 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.04 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.03 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.03 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.03 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.02 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.02 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.02 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.02 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.02 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.01 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.01 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.99 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.99 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.99 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.98 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.98 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.97 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.96 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.95 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.95 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.94 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.93 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.91 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.9 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.85 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.85 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.84 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.79 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.79 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.79 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.77 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.76 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.75 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.71 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.7 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.68 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.58 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.58 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.57 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.57 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.52 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.51 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.48 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.47 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.43 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.36 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.35 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.35 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.34 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.33 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.3 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.27 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.24 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.23 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.18 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.17 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.14 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.13 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.08 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.07 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.05 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.94 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.9 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.89 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.87 | |
| 3gp4_A | 142 | Transcriptional regulator, MERR family; structural | 97.76 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.76 | |
| 3hh0_A | 146 | Transcriptional regulator, MERR family; protein st | 97.76 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.74 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.72 | |
| 3gpv_A | 148 | Transcriptional regulator, MERR family; protein st | 97.71 | |
| 2vz4_A | 108 | Tipal, HTH-type transcriptional activator TIPA; tr | 97.68 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.67 | |
| 1q06_A | 135 | Transcriptional regulator CUER; MERR family transc | 97.64 | |
| 2zhg_A | 154 | Redox-sensitive transcriptional activator SOXR; ox | 97.62 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.61 | |
| 2jml_A | 81 | DNA binding domain/transcriptional regulator; anti | 97.59 | |
| 1r8d_A | 109 | Transcription activator MTAN; protein-DNA complex, | 97.58 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.51 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.46 | |
| 2dg6_A | 222 | Putative transcriptional regulator; winged-helix m | 97.41 | |
| 3qao_A | 249 | LMO0526 protein, MERR-like transcriptional regulat | 97.34 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.33 | |
| 1r8e_A | 278 | Multidrug-efflux transporter regulator; protein-DN | 97.08 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.03 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.01 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.91 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.79 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.75 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.71 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.32 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.08 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.69 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.54 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.46 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.4 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.18 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.96 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.92 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 93.82 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.74 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.07 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.98 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.96 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.73 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 92.6 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.57 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.56 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.52 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.09 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.07 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 92.05 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 91.87 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.58 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 90.88 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.78 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.76 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.75 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 90.52 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.37 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 90.34 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.32 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 90.19 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.14 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 90.09 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 89.9 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.7 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 89.48 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 89.47 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.46 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.4 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 89.29 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 88.81 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 88.43 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.14 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 87.97 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.96 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.62 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 87.2 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 87.18 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 87.1 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 86.92 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 86.71 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 86.44 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 86.31 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 85.98 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 85.87 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 85.8 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 85.56 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 85.37 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.32 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 85.17 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.42 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 84.14 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.09 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 84.07 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.88 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 82.93 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 82.55 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 82.44 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 82.2 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 82.05 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 81.78 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 81.62 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 80.72 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 80.63 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 80.05 |
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=141.73 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=118.0
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeecc
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISR 272 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~ 272 (372)
+.+.+.+...++ .+|||||||+|.++..+++.+.....++++|+++.+++.|+++ ++ .+.+...|..
T Consensus 27 ~~~~~~~~~~~~--------~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~ 98 (219)
T 3dh0_A 27 EKVLKEFGLKEG--------MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN 98 (219)
T ss_dssp HHHHHHHTCCTT--------CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT
T ss_pred HHHHHHhCCCCC--------CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc
Confidence 455566665554 7999999999999999998753345799999999999988765 44 4777888888
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
.+++++++||+|+++.+++|+ ++...++.++.++|+|||.++++++........+........+.+..+.+..+|+.+.
T Consensus 99 ~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 99 KIPLPDNTVDFIFMAFTFHEL-SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp BCSSCSSCEEEEEEESCGGGC-SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCCCeeEEEeehhhhhc-CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEE
Confidence 899999999999999887777 6778899999999999999999987655432222222222345567777888998765
Q ss_pred ee-----cceEEEEecC
Q 017377 353 QQ-----DETFIWQKTV 364 (372)
Q Consensus 353 ~~-----~~~~iw~K~~ 364 (372)
.. ...++.+|+.
T Consensus 178 ~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 178 VVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp EEEETTTEEEEEEECC-
T ss_pred EEeeCCceEEEEEEecc
Confidence 43 2234666654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=154.03 Aligned_cols=99 Identities=23% Similarity=0.292 Sum_probs=85.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..|++.+ ..|+|+|+|+.|++.|+++ .++.+...+++.+|+++++||+|+|+.++ ||. ++
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~-~~ 114 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF-DL 114 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC-CH
T ss_pred CCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeeh-hHh-hH
Confidence 589999999999999999875 4589999999999988653 46778888999999999999999999875 663 46
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
..++.++.|+|||||.|++......
T Consensus 115 ~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 6799999999999999999876543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-16 Score=139.90 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=105.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++.. .+.+...|...++++ ++||+|+|..+++|+ ++
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~-~~ 121 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL-TD 121 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGS-CH
T ss_pred CeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcC-Ch
Confidence 789999999999999999874 469999999999999998854 566777788888888 999999999887777 45
Q ss_pred HHH--HHHHHHhcccCCeEEEEEeCCCCCCCCCC-----------c--chhhH-----HHHHHHHHHHhcCeeEEeeecc
Q 017377 297 EGI--FLIEADRLLKPGGYFVLTSPESKPRGSSS-----------S--RKNKS-----LLKVMEEFTEKICWSLIAQQDE 356 (372)
Q Consensus 297 ~~~--~L~el~rvLkPGG~lvis~p~~~~~~~~~-----------~--~e~~~-----~w~~i~~l~~~lcw~~~~~~~~ 356 (372)
+.. +|.++.++|||||.+++.++......... . ..... .-+.+..+.++.++++......
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc
Confidence 544 99999999999999999987654310000 0 00000 1255677889999998877765
Q ss_pred eEEE
Q 017377 357 TFIW 360 (372)
Q Consensus 357 ~~iw 360 (372)
...|
T Consensus 202 ~~~w 205 (220)
T 3hnr_A 202 HFVW 205 (220)
T ss_dssp SSEE
T ss_pred ceEE
Confidence 5544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=144.95 Aligned_cols=112 Identities=22% Similarity=0.342 Sum_probs=93.5
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeec
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFIS 271 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~ 271 (372)
.+.+.+.+...++ .+|||||||+|.++..+++.+. .++++|+|+.|++.|+++ ++ ++.+...|.
T Consensus 26 ~~~l~~~l~~~~~--------~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~ 94 (260)
T 1vl5_A 26 LAKLMQIAALKGN--------EEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94 (260)
T ss_dssp HHHHHHHHTCCSC--------CEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHhCCCCC--------CEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH
Confidence 3456666665554 7999999999999999998753 799999999999988765 43 467778888
Q ss_pred cCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..+|+++++||+|+|+.+++|+ +++..+|.++.|+|||||++++.++.
T Consensus 95 ~~l~~~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 95 EQMPFTDERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp -CCCSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HhCCCCCCCEEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 8999999999999999887777 67778999999999999999998654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=142.19 Aligned_cols=98 Identities=13% Similarity=-0.068 Sum_probs=81.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----------------CCCeEEEEeeccCCCCCC-C
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----------------GLPAMIGNFISRQLPYPS-L 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----------------gl~~~~~~~d~~~lp~~~-~ 279 (372)
.+|||+|||+|..+..|++++ ..|+|+|+|+.|++.|+++ ..++.+.+.|+..+++++ +
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 789999999999999999885 4699999999999999876 235677888888998875 8
Q ss_pred CccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 017377 280 SFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+||+|++..++++++. +...++.++.|+|||||++++..
T Consensus 101 ~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999888777753 33468999999999999855444
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=138.55 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=107.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc-cc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD-KK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~ 296 (372)
.+|||||||+|.++..+++.+. .++++|+++.+++.|+++...+.+...+...+++++++||+|++..+++|+. ++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 6899999999999999998853 5899999999999999987778888888888999999999999999988885 47
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCCCCCC---CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
...+|.++.++|+|||+++++++........ .........+.+..+.++.+|+.+...
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 7789999999999999999998766541100 000111224556777788899988654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=134.97 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=100.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++...+.+...+ +++++++||+|+++.+++|+ ++.
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~-~~~ 91 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM-DDK 91 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC-SCH
T ss_pred CeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc-cCH
Confidence 689999999999999999875 37999999999999999886567777665 78889999999999887777 677
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
..++.++.++|+|||++++.++........+........+.+..+.+ +|+.+...
T Consensus 92 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 92 QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 88999999999999999999876654332222222222344555555 88877553
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=145.60 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=101.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||||||+|.++..+++.+ ...++++|+|+.+++.|+++.. .+.+...+...+++++++||+|++..+++|+.
T Consensus 95 ~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 172 (254)
T 1xtp_A 95 SRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT 172 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred CEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCC
Confidence 799999999999999998875 3468999999999999998743 46677778888899899999999999888875
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC---CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 295 -KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 295 -~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
++...+|.++.++|||||+++++++........ ........-+.+..+.++.+|+.+...
T Consensus 173 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 173 DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 345689999999999999999998643221100 000011123456667778888877543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=141.44 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMI 266 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~ 266 (372)
.....+.+.+.+...++ .+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+
T Consensus 46 ~~~~~~~l~~~~~~~~~--------~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 115 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSG--------DRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTF 115 (273)
T ss_dssp HHHHHHHHHHHSCCCTT--------CEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence 34555666666665554 799999999999999998863 36799999999999988765 44 3777
Q ss_pred EEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...|...+|+++++||+|++..+++|+ ++...+|.++.++|||||+++++++..
T Consensus 116 ~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 116 SYADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred EECccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 788888999999999999999887777 667789999999999999999998754
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=142.65 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=84.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-CceeEEEEeeCCHHHHHHHHHc----C--CCeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALER----G--LPAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-~~~~~v~gvD~s~~~v~~A~~r----g--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..|++.. .....|+|+|+|+.|++.|+++ + .++.+.+.|+..+|++ .||+|+++.++
T Consensus 72 ~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l 149 (261)
T 4gek_A 72 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 149 (261)
T ss_dssp CEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCG
T ss_pred CEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeee
Confidence 789999999999999998863 2456899999999999999876 3 2467788888888764 59999999887
Q ss_pred cccccc-HHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 291 IIWDKK-EGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 291 ~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+++.+. ...+|++++|+|||||.|++++....
T Consensus 150 ~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 150 QFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred eecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 776433 34689999999999999999986543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=137.46 Aligned_cols=133 Identities=19% Similarity=0.166 Sum_probs=104.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ ...+.+...+...+++++++||+|++..+++|+ +
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~ 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT-E 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS-S
T ss_pred CeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc-c
Confidence 689999999999999999885 4689999999999999987 345777788888999999999999999888777 7
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC---------CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKPRGSS---------SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~---------~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
++..++.++.++|+|||+++++++........ +.......-..+..+.+..+|+.+...
T Consensus 131 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 131 EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 77789999999999999999998755431110 000000112356777788999988543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=139.13 Aligned_cols=132 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|||||||+|.++..+++.+. .++|+|+|+.+++.|+++.. .+.+...+...+ +++++||+|+|..+++|+ ++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~-~~ 118 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI-DD 118 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC-SS
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh-cC
Confidence 6899999999999999998764 58999999999999998855 567777777777 578899999999988887 67
Q ss_pred HHHHHHHHH-hcccCCeEEEEEeCCCCCC--------CCCCcc----------h--hhHHHHHHHHHHHhcCeeEEeee
Q 017377 297 EGIFLIEAD-RLLKPGGYFVLTSPESKPR--------GSSSSR----------K--NKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 297 ~~~~L~el~-rvLkPGG~lvis~p~~~~~--------~~~~~~----------e--~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
+..+|+++. |+|||||++++++++.... ...+.. . .....+.+..+.+..+|+.+...
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 788999999 9999999999999876531 000000 0 01123456777788899887554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-16 Score=141.82 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=89.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||||||+|.++..+++.. ...++++|+|+.+++.|+++. ..+.+...|...+|+++++||+|++..+++|+.
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 134 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS 134 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSC
T ss_pred CEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcC
Confidence 799999999999999999873 357999999999999999875 457778888888999999999999998877774
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 295 -KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 295 -~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
++...+|.++.++|||||.+++.++...
T Consensus 135 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 135 LENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred hHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 5566899999999999999999987543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-15 Score=139.04 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=102.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..+++. ....++++|+|+.+++.|+++ +++ +.+...|...+|+++++||+|+|..++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred CCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence 379999999999999999987 235799999999999988765 443 778888889999999999999999988
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHH----------HHHHHHHHhcCeeEEee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLL----------KVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w----------~~i~~l~~~lcw~~~~~ 353 (372)
+|+ ++..++.++.++|||||+++++++...... +.......| ..+..+.++.+|+.+..
T Consensus 125 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 125 YNI--GFERGLNEWRKYLKKGGYLAVSECSWFTDE--RPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp GGT--CHHHHHHHHGGGEEEEEEEEEEEEEESSSC--CCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred eec--CHHHHHHHHHHHcCCCCEEEEEEeeecCCC--ChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 777 567799999999999999999987532211 111222333 34566668888887743
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-15 Score=136.93 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=101.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++... ..++++|+|+.+++.|+++ ++. +.+...|...+|+++++||+|+|..+++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 6999999999999999998853 2799999999999988765 443 7788888899999999999999998877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHH----------HHHHHHHHhcCeeEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLL----------KVMEEFTEKICWSLIA 352 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w----------~~i~~l~~~lcw~~~~ 352 (372)
|+ +...++.++.++|||||+++++++...... +.......| ..+..+.+..+|+.+.
T Consensus 126 ~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 126 NI--GFERGMNEWSKYLKKGGFIAVSEASWFTSE--RPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp CC--CHHHHHHHHHTTEEEEEEEEEEEEEESSSC--CCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred hc--CHHHHHHHHHHHcCCCcEEEEEEeeccCCC--ChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 76 567799999999999999999986522211 111222223 3456666888888775
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=140.13 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~ 267 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ ++.+.
T Consensus 22 ~~~~~~l~~~~~~~~~--------~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~ 91 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPG--------TRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 91 (256)
T ss_dssp HHHHHHHHHHTCCCTT--------CEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE
Confidence 4556677777766555 799999999999999999873 34689999999999988765 44 37788
Q ss_pred EeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..|+..+++ +++||+|+|..+++|+ ++...+|.++.++|||||+++++++..
T Consensus 92 ~~d~~~~~~-~~~fD~V~~~~~~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 92 HNDAAGYVA-NEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEPYW 143 (256)
T ss_dssp ESCCTTCCC-SSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred ECChHhCCc-CCCCCEEEECCChHhc-CCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 888888888 8899999999887776 566779999999999999999988643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=142.09 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ 273 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~ 273 (372)
..+.+.+.+.+...++ .+|||||||+|.++..+++.+ ..++|+|+|+.+++.|+++. ++.+...|...
T Consensus 20 ~~~~~~l~~~~~~~~~--------~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~ 87 (261)
T 3ege_A 20 IRIVNAIINLLNLPKG--------SVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAEN 87 (261)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCT-TEEEECCCTTS
T ss_pred HHHHHHHHHHhCCCCC--------CEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcc-CCEEEECchhh
Confidence 3566677777765554 799999999999999999854 57999999999999887665 77888888899
Q ss_pred CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 274 lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+|+++++||+|+|..+++|+ ++...+++++.++|| ||++++.++...
T Consensus 88 ~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 88 LALPDKSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp CCSCTTCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred CCCCCCCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 99999999999999987777 788889999999999 998888887643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=143.57 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHH----ccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--
Q 017377 193 VKDYSRQIAEMI----GLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-- 262 (372)
Q Consensus 193 ~~~~~~~l~~~l----~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-- 262 (372)
.....+.+.+.+ ...++ .+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~--------~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 132 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQ--------AKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLAD 132 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTT--------CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhhhccCCCCC--------CEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 345566677776 44444 799999999999999999872 24799999999999988765 44
Q ss_pred CeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 263 PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 263 ~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.+.+...|...+|+++++||+|++..+++|+ .++..+|.++.++|||||+++++++...
T Consensus 133 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp TEEEEECCTTSCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred ceEEEEcCcccCCCCCCCEeEEEecchhhhc-CCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 4777888889999999999999999998888 5677899999999999999999987543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-15 Score=133.14 Aligned_cols=161 Identities=15% Similarity=0.076 Sum_probs=109.9
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----C------Ce
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----L------PA 264 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l------~~ 264 (372)
...+.+.+.+....+ .+|||||||+|.++..+++.+. ...++++|+|+.+++.|+++. + .+
T Consensus 16 ~~~~~l~~~l~~~~~--------~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (219)
T 3jwg_A 16 QRLGTVVAVLKSVNA--------KKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86 (219)
T ss_dssp HHHHHHHHHHHHTTC--------CEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred HHHHHHHHHHhhcCC--------CEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence 344555555554443 7999999999999999998753 357999999999999998762 2 56
Q ss_pred EEEEeeccCCCCCCCCccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCC---Cc-----ch----
Q 017377 265 MIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSS---SS-----RK---- 331 (372)
Q Consensus 265 ~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~-----~e---- 331 (372)
.+...|...+++++++||+|+|..+++|+.++ ...+++++.++|||||.++.+ ++....... +. ..
T Consensus 87 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (219)
T 3jwg_A 87 SLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST-PNKEYNFHYGNLFEGNLRHRDHRFE 165 (219)
T ss_dssp EEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE-EBGGGGGCCCCT-----GGGCCTTS
T ss_pred EEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc-cchhhhhhhcccCcccccccCceee
Confidence 77777777788888999999999998888432 257999999999999965544 433220000 00 00
Q ss_pred -hhHHH-HHHHHHHHhcCeeEEeee-----------cceEEEEecCC
Q 017377 332 -NKSLL-KVMEEFTEKICWSLIAQQ-----------DETFIWQKTVD 365 (372)
Q Consensus 332 -~~~~w-~~i~~l~~~lcw~~~~~~-----------~~~~iw~K~~~ 365 (372)
....+ .-++.+++..++++.... .+++++.|...
T Consensus 166 ~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~~ 212 (219)
T 3jwg_A 166 WTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLGAG 212 (219)
T ss_dssp BCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEECC-
T ss_pred ecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEeccCC
Confidence 01111 112366677888887652 34678888764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=139.49 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=88.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.+.. .++++|+|+.+++.|+++. ..+.+...|...+++++++||+|+|..+++|+ +
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~ 122 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI-A 122 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC-S
T ss_pred CEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh-h
Confidence 79999999999999999998642 6899999999999999874 45778888888999999999999999887777 7
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+...+|+++.++|||||.++++.+.
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 7888999999999999999998654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=133.49 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=88.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++. ....++++|+++.+++.|+++ ++ .+.+...|...+++++++||+|+++.+++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHh
Confidence 38999999999999999987 347899999999999998876 43 47778888889999999999999998877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
|+ +++..+|.++.++|+|||.++++++..
T Consensus 123 ~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 123 FW-EDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hc-cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 77 778889999999999999999987654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=136.28 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=94.2
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeecc
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISR 272 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~ 272 (372)
..+.+.+...++ .+|||||||+|.++..+++.+. .++++|+++.+++.|+++ ++ ++.+...+..
T Consensus 11 ~~~~~~~~~~~~--------~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 79 (239)
T 1xxl_A 11 GLMIKTAECRAE--------HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 79 (239)
T ss_dssp HHHHHHHTCCTT--------CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred chHHHHhCcCCC--------CEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc
Confidence 345556666555 7999999999999999998753 689999999999988765 43 4677778888
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+|+++++||+|+|..+++|+ .++..+|.++.++|||||++++.++..
T Consensus 80 ~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 80 SLPFPDDSFDIITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp BCCSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cCCCCCCcEEEEEECCchhhc-cCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 899999999999999888887 677889999999999999999987654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=132.81 Aligned_cols=100 Identities=27% Similarity=0.334 Sum_probs=87.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+ +. ..++++|+|+.+++.|+++...+.+...+...+|+++++||+|++..+++|+ +++
T Consensus 38 ~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~ 111 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV-EDV 111 (211)
T ss_dssp SEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC-SCH
T ss_pred CeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc-CCH
Confidence 78999999999998887 22 2689999999999999988656677777888899999999999999887777 677
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
..++.++.++|||||.+++++++...
T Consensus 112 ~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 112 ERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 88999999999999999999987643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=141.72 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPA 264 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~ 264 (372)
..+.+.+.+.+...++ .+|||||||+|.++..+++.+. .++|+|+|+.|++.|+++. ..+
T Consensus 43 ~~~~~~l~~~l~~~~~--------~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~ 111 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGC--------HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKW 111 (293)
T ss_dssp HHHHHHHHHHHHHTTC--------CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred HHHHHHHHHHhcccCC--------CEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhccccccccee
Confidence 4455566666654444 7899999999999999999864 6999999999999997642 235
Q ss_pred EEEEeeccCCC---CCCCCccEEEec-ccccccccc-------HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 265 MIGNFISRQLP---YPSLSFDMVHCA-QCGIIWDKK-------EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 265 ~~~~~d~~~lp---~~~~sFDlV~~~-~~~~~~~~~-------~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+...+...++ +++++||+|+|. .+++|+ .+ ...+|.++.++|||||+++++.++
T Consensus 112 ~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHL-PDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECCGGGHHHHSCCTTCEEEEEECTTCGGGS-CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEeecChhhCccccccCCCeEEEEEcChHHhhc-CccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 56667777777 888999999998 777777 44 668999999999999999999875
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=138.77 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=92.5
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPS 278 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~ 278 (372)
.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++..++.+...|...+|+ +
T Consensus 48 ~l~~~l~~~~~--------~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~ 115 (279)
T 3ccf_A 48 DLLQLLNPQPG--------EFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-D 115 (279)
T ss_dssp HHHHHHCCCTT--------CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-S
T ss_pred HHHHHhCCCCC--------CEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-C
Confidence 45555655444 789999999999999999843 57999999999999999886556677778888887 5
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 279 LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 279 ~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
++||+|+++.+++++ .++..+|.++.++|||||++++..+...
T Consensus 116 ~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 116 KPLDAVFSNAMLHWV-KEPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp SCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCcCEEEEcchhhhC-cCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 899999999886665 6788899999999999999999987653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=138.20 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=102.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..+++.. ...++++|+++.+++.|+++ ++. +.+...|...+|+++++||+|++..++
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 195 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST 195 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred CCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence 3799999999999999999872 25699999999999988865 543 778888899999999999999999887
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhH----------HHHHHHHHHHhcCeeEEeee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKS----------LLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~----------~w~~i~~l~~~lcw~~~~~~ 354 (372)
+|+ + ...+|.++.++|||||++++.++............... ..+.+..+.++.+++.+...
T Consensus 196 ~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 196 MYV-D-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp GGS-C-HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred hhC-C-HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 777 3 77899999999999999999987554422110000000 12445666788888877544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=136.34 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=98.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC--CCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL--PYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l--p~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.+. .++++|+|+.+++.|+++ +.+...+.... |+++++||+|+|..+++|+.+
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 7899999999999999998754 489999999999999987 55555566554 788999999999999888853
Q ss_pred -cHHHHHHHHHhcccCCeEEEEEeCCCCCCC------CCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 296 -KEGIFLIEADRLLKPGGYFVLTSPESKPRG------SSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 296 -~~~~~L~el~rvLkPGG~lvis~p~~~~~~------~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
+...++.++.++|||||++++++++..... ..+.......-+.+..+.++.+++.+...
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 346799999999999999999998765410 00000011112456677788888876443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=135.83 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=87.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++... ...++++|+|+.+++.|+++..++.+...|...++ ++++||+|+++.+++|+ ++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~-~~~ 111 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV-PDH 111 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS-TTH
T ss_pred CEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC-CCH
Confidence 7899999999999999998721 24589999999999999988666778888888888 78999999999886665 778
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+|.++.++|+|||+++++.+..
T Consensus 112 ~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 112 LAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC
Confidence 889999999999999999998754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=137.47 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=88.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++.... +...+...+|+++++||+|++..+++|+.+++
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 689999999999999999875 46999999999999999886533 66678888999999999999988788887778
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+|.++.++|||||.++++.++.
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCh
Confidence 889999999999999999998854
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=131.35 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=87.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-CCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|++.+ .++.+...|...+ +++++||+|+++.+++|+.+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~ 123 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDD 123 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHH
Confidence 689999999999999999884 46899999999999999877 4577777888777 788999999999988887433
Q ss_pred -HHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 297 -EGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 297 -~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
...+|.++.++|+|||.+++++++..
T Consensus 124 ~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 124 RFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 26799999999999999999987653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=133.09 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=92.8
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--CeEEEEeeccCCCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--PAMIGNFISRQLPY 276 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~~~~~~~d~~~lp~ 276 (372)
.+.+.+...++ .+|||||||+|.++..+++.+. ..++++|+|+.+++.|+++.. .+.+...+...+++
T Consensus 34 ~l~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~ 103 (243)
T 3bkw_A 34 ALRAMLPEVGG--------LRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHL 103 (243)
T ss_dssp HHHHHSCCCTT--------CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCC
T ss_pred HHHHhccccCC--------CEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccC
Confidence 45555554444 7899999999999999998853 268999999999999998753 36677778888888
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++||+|++..+++|+ ++...+|.++.++|+|||++++++++
T Consensus 104 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYV-EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCceEEEEecccccc-chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 88999999999887776 67788999999999999999998864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=137.37 Aligned_cols=98 Identities=11% Similarity=-0.019 Sum_probs=82.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----------------------CCeEEEEeeccCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------------------LPAMIGNFISRQLP 275 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----------------------l~~~~~~~d~~~lp 275 (372)
.+|||+|||+|..+..|+++|. .|+|+|+|+.|++.|+++. .++.+.+.|+..++
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 6899999999999999999864 6999999999999997542 35678888888888
Q ss_pred CCC-CCccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 017377 276 YPS-LSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 276 ~~~-~sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+++ ++||+|++..++.++++ +...++.++.++|||||++++.+
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 764 89999999888777753 34579999999999999997654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-15 Score=131.39 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=85.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++.. ++.+...|...++ ++++||+|+|+.+++|+.
T Consensus 53 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 128 (216)
T 3ofk_A 53 SNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLE 128 (216)
T ss_dssp EEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSS
T ss_pred CcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCC
Confidence 789999999999999999874 579999999999999998742 4677778888887 689999999999888774
Q ss_pred ccH--HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 295 KKE--GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 295 ~~~--~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.. ..++.++.++|||||+++++++..
T Consensus 129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 222 468999999999999999988754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=131.15 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=89.9
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC------CeE
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL------PAM 265 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl------~~~ 265 (372)
..+.+.+.+....+ .+|||||||+|.++..+++.+. ...++++|+++.+++.|+++ ++ .+.
T Consensus 17 ~~~~l~~~l~~~~~--------~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~ 87 (217)
T 3jwh_A 17 RMNGVVAALKQSNA--------RRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87 (217)
T ss_dssp HHHHHHHHHHHTTC--------CEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEE
T ss_pred HHHHHHHHHHhcCC--------CEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceE
Confidence 34455555554444 7999999999999999998753 25799999999999999876 22 466
Q ss_pred EEEeeccCCCCCCCCccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~p 319 (372)
+...|....++++++||+|+|+.+++|+.+. ...+++++.++|||||.++++..
T Consensus 88 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 88 LIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred EEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 7777777777777899999999998887432 25799999999999997766544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.5e-15 Score=134.81 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=85.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ ..++.+...|...+|+++++||+|++..+++++
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 117 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV 117 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence 789999999999999999874 4699999999999999887 345778888888899999999999999886665
Q ss_pred cccHHHHHHHHHhcccCCeEEEEE
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis 317 (372)
++...++.++.++|+|||.+++.
T Consensus 118 -~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 -PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHCCCCcEEEEE
Confidence 67788999999999999999998
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=145.65 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=102.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------C----CCeEEEEeeccCC------CC
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------G----LPAMIGNFISRQL------PY 276 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------g----l~~~~~~~d~~~l------p~ 276 (372)
...+|||||||+|.++..+++.......++++|+|+.+++.|+++ | .++.+...|...+ |+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 347899999999999999988632335799999999999999876 4 4677888888777 89
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhh----------HHHHHHHHHHHhc
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNK----------SLLKVMEEFTEKI 346 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~----------~~w~~i~~l~~~l 346 (372)
++++||+|+++.+++++ +++..+|.++.++|||||+++++++.............. ..++.+..+.++.
T Consensus 163 ~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLS-TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCEEEEEEccchhcC-CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 99999999999886666 678889999999999999999998655431110000000 1125566777888
Q ss_pred CeeEE
Q 017377 347 CWSLI 351 (372)
Q Consensus 347 cw~~~ 351 (372)
+|+.+
T Consensus 242 GF~~v 246 (383)
T 4fsd_A 242 GFRDV 246 (383)
T ss_dssp TCCCE
T ss_pred CCceE
Confidence 88755
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=151.91 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEE---Ee
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIG---NF 269 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~---~~ 269 (372)
...+.+.+.+.+...++ .+|||||||+|.++..+++.+. .++|+|+|+.+++.|++++++.... ..
T Consensus 92 ~~~~~~~l~~~~~~~~~--------~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 160 (416)
T 4e2x_A 92 FAMLARDFLATELTGPD--------PFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKA 160 (416)
T ss_dssp HHHHHHHHHHTTTCSSS--------CEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHH
T ss_pred HHHHHHHHHHHhCCCCC--------CEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechh
Confidence 34445555555544443 7999999999999999998864 6899999999999999997765432 22
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC-------CCCCCcchhhHHHHHHHHH
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP-------RGSSSSRKNKSLLKVMEEF 342 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~-------~~~~~~~e~~~~w~~i~~l 342 (372)
+...+|+++++||+|++..+++|+ +++..+|+++.++|||||++++..++... ....+........+.+..+
T Consensus 161 ~~~~l~~~~~~fD~I~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 239 (416)
T 4e2x_A 161 TADDVRRTEGPANVIYAANTLCHI-PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGM 239 (416)
T ss_dssp HHHHHHHHHCCEEEEEEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHH
T ss_pred hHhhcccCCCCEEEEEECChHHhc-CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHH
Confidence 344567778999999999998888 68888999999999999999999875211 0000000111223456777
Q ss_pred HHhcCeeEEeee
Q 017377 343 TEKICWSLIAQQ 354 (372)
Q Consensus 343 ~~~lcw~~~~~~ 354 (372)
.++.+++.+...
T Consensus 240 l~~aGf~~~~~~ 251 (416)
T 4e2x_A 240 AQRCGFELVDVQ 251 (416)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHcCCEEEEEE
Confidence 788899887543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=130.33 Aligned_cols=130 Identities=17% Similarity=0.064 Sum_probs=99.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC------CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL------PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl------~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++.. .+.+...|...++ ++++||+|+++.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 589999999999999998753 569999999999999988732 2677777887776 456999999998877
Q ss_pred ccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWD-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
++. ++...++.++.++|+|||++++...........+... ...+.+..+.+..+|+.+..
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYK--VDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCC--CCHHHHHHHHGGGTEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCcc--CCHHHHHHHHHHcCCeEEEE
Confidence 774 2667899999999999999999887654422211111 12345667778889988754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=131.80 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=98.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-CCCeEEEEeeccCCCCCCCCccEEEecccccccc-c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD-K 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~-~ 295 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ ++.+. ..+...++ ++++||+|+|+.+++|+. +
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRLGRPVR--TMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTSCCE--ECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred CcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhcCCceE--EeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 689999999999999999885 4689999999999999987 55444 44667777 789999999999988875 3
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCCCCC--CCcchhhHHHHHHHHHHHhcC-eeEEeee
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKPRGS--SSSRKNKSLLKVMEEFTEKIC-WSLIAQQ 354 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~~~~--~~~~e~~~~w~~i~~l~~~lc-w~~~~~~ 354 (372)
+...+|.++.++|||||+++++.+....... ..........+.+..+.++.+ |+.+...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 5568999999999999999999876543111 000011112345666777788 8776543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=125.31 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=84.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ ++ ++.+...|...+++ +++||+|+++.+++|
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 699999999999999999884 4699999999999988764 44 56777778888888 889999999988777
Q ss_pred cc-ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WD-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~-~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+. ++...++.++.++|+|||++++.++..
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 74 366789999999999999988876533
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=136.85 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=87.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+.+|||||||+|.++..+++.......++++|+|+.+++.|+++ +.++.+...|...++++ ++||+|++..++.|
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 101 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLH 101 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhhc
Confidence 37999999999999999998743346799999999999988875 33567778888888884 69999999988777
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+ ++...++.++.++|||||++++.++.
T Consensus 102 ~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 102 M-TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp C-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 6 67778999999999999999999987
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=121.63 Aligned_cols=123 Identities=18% Similarity=0.098 Sum_probs=98.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEec-ccccccc-c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCA-QCGIIWD-K 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~-~~~~~~~-~ 295 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.++++..++.+...+...+++++++||+|+++ .+++++. +
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~ 124 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAED 124 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChH
Confidence 689999999999999999874 4689999999999999988766777778888888888999999998 4544543 3
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+...++.++.++|+|||.+++..+.... ...+.+..+.+..+++....
T Consensus 125 ~~~~~l~~~~~~l~~~G~l~~~~~~~~~----------~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 125 GREPALANIHRALGADGRAVIGFGAGRG----------WVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEETTSS----------CCHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCC----------cCHHHHHHHHHHcCCEEeee
Confidence 3467999999999999999998875432 11234555667778887654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=131.08 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=87.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
..+|||||||+|.++..+++.. ....++++|+|+.+++.|+++.. .+.+...|...++++ ++||+|++..+++|+
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHL 122 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGS
T ss_pred CCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccC
Confidence 3799999999999999999874 23679999999999999998733 577788888888887 899999999988887
Q ss_pred cccH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 294 DKKE-GIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 294 ~~~~-~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.+.. ..+|+++.++|||||.++++++...
T Consensus 123 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 4322 2599999999999999999987544
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=135.48 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=83.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+...|...+| ++||+|++..+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFE 140 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred CEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchh
Confidence 799999999999999998542 23799999999999999876 33 4666667776665 8899999999988
Q ss_pred ccc-ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 292 IWD-KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 292 ~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
|+. ++...+|.++.++|||||.+++.++...
T Consensus 141 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 141 HFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp GTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred hcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 886 4677899999999999999999987654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=133.62 Aligned_cols=98 Identities=22% Similarity=0.200 Sum_probs=85.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecc-cccccc--
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQ-CGIIWD-- 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~-~~~~~~-- 294 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++...+.+...|+..+++ +++||+|+|.. ++.|+.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHH
T ss_pred CcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCH
Confidence 689999999999999999875 36899999999999999987677888888888888 78999999997 777764
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++...+|.++.++|||||.+++...
T Consensus 128 ~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 128 AELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEec
Confidence 3555789999999999999999754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=136.79 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=86.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC-CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP-YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp-~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ ++ .+.+...|...++ +++++||+|+|..++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 689999999999999999884 4689999999999998876 43 3667778888887 788999999999887
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+|+ +++..+|.++.++|||||++++.+++
T Consensus 147 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 147 EWV-ADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp GGC-SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hcc-cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 777 67788999999999999999999864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=130.29 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=85.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+...|...+++++++||+|+++.+++++
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 6899999999999999998864 699999999999988865 356777788888888888999999999773333
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. .+...++.++.++|+|||.+++.+++
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2 45667999999999999999999875
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-14 Score=126.76 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=86.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC------CeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL------PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl------~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ ++ .+.+...+...+++++++||+|+++
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 689999999999999999884 4699999999999999885 22 2467777888889999999999999
Q ss_pred cccccccccHH---HHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIWDKKEG---IFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~~~~~~---~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+++|+ .++. .++.++.++|+|||+++++++...+
T Consensus 109 ~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (235)
T 3sm3_A 109 AFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW 146 (235)
T ss_dssp SCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCT
T ss_pred chhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECCcch
Confidence 887777 4444 7999999999999999999876543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=136.38 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=84.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-------CCCeEEEEeeccCCCCCC------CCccEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-------GLPAMIGNFISRQLPYPS------LSFDMV 284 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-------gl~~~~~~~d~~~lp~~~------~sFDlV 284 (372)
.+|||||||+|.++..+++.......++|+|+|+.+++.|+++ ..++.+...|+..+++++ ++||+|
T Consensus 38 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V 117 (299)
T 3g5t_A 38 KLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMI 117 (299)
T ss_dssp SEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEE
Confidence 7999999999999999996421346799999999999999876 346778888888888877 899999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
+|+.+++|+ +...++.++.++|+|||.+++.
T Consensus 118 ~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 118 TAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred eHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 999886666 8888999999999999999983
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=129.21 Aligned_cols=102 Identities=23% Similarity=0.162 Sum_probs=84.1
Q ss_pred CeEEEeCCCCcHHH-HHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFG-AHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~-~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++ ..++..+ ..++++|+|+.+++.|+++ +..+.+...|+..+++++++||+|++..+++|
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 78999999999974 4444443 4699999999999988765 45566777788889998999999999988777
Q ss_pred cc-ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WD-KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~-~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+. ++...++.++.++|+|||.++++++...
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 74 4566899999999999999999987543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=128.95 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=96.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC---CCCC-CCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---PYPS-LSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l---p~~~-~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|++++ ...+...+...+ ++.. ++||+|+|+.+++
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAAG-AGEVHLASYAQLAEAKVPVGKDYDLICANFALL-- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHTC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--
T ss_pred CEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHhc-ccccchhhHHhhcccccccCCCccEEEECchhh--
Confidence 789999999999999999885 46899999999999999883 334444444444 5444 4599999998866
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC-------------------CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS-------------------SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~-------------------~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
..+...++.++.++|+|||++++++++....... +........+.+..+.++.+|+.+...
T Consensus 128 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 128 HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ 207 (227)
T ss_dssp SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence 4677789999999999999999999865442110 000001124556777788899887543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=134.02 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=88.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++... ...++++|+++.+++.|+++ ++ ++.+...|...+++++++||+|+++.++.|
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 117 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH 117 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGG
T ss_pred CeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhh
Confidence 7999999999999999998842 35799999999999988875 44 467777888899999999999999988777
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+ +++..++.++.++|||||++++.++..
T Consensus 118 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 118 L-QSPEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 7 667789999999999999999998654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=134.81 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=90.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
...+.+.+.+...++ .+|||||||+|.++..+++. + ..++++|+|+.+++.|+++ ++. +.+.
T Consensus 59 ~~~~~~~~~~~~~~~--------~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 127 (302)
T 3hem_A 59 AKRKLALDKLNLEPG--------MTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR 127 (302)
T ss_dssp HHHHHHHHTTCCCTT--------CEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHcCCCCc--------CEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 344555555555444 79999999999999999987 4 5699999999999988876 443 6667
Q ss_pred EeeccCCCCCCCCccEEEeccccccccc--------cHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDK--------KEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
..|...+ +++||+|+++.+++|+.+ +...++.++.++|||||.+++.++...
T Consensus 128 ~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 128 IQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp ECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 7777665 789999999998888732 225799999999999999999987554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=127.06 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=97.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..++.. +++|+++.+++.|+++ .+.+...+...+++++++||+|++..+++|+ +++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~ 118 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFV-DDP 118 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCH
T ss_pred CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhc-cCH
Confidence 68999999999999988754 7899999999999988 4555666778888888999999999887776 677
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCC-----------CCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPR-----------GSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~-----------~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
..+|.++.++|+|||.+++++++.... ............+.+..+.++.+++.+...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 889999999999999999998765421 000000011123556777788898876543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-14 Score=122.32 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=75.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp-~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++. ...|+++|+|+.+++.|+++ ++ ++.+...+...++ +++++||+|+++...+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 78999999999999999987 36699999999999988765 44 3555555555543 5578999999873322
Q ss_pred cc--------cccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IW--------DKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~--------~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+. ..+...++.++.++|||||.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 22 1334468999999999999999987643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=127.87 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=85.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||||||+|.++..+++.+.. .++++|+++.+++.|+++. ..+.+...|...+++++++||+|+++.++.++.
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 121 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALL 121 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhc
Confidence 68999999999999999988643 6899999999999998874 246677778888899899999999987665442
Q ss_pred --------------ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 295 --------------KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 295 --------------~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+...++.++.++|+|||.+++.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 244679999999999999999998854
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=128.77 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=92.8
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEee
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFI 270 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d 270 (372)
.+.+.+.+.+..... ...+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ +..+.+...+
T Consensus 22 ~~~~~~~~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d 92 (246)
T 1y8c_A 22 KWSDFIIEKCVENNL------VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHTTTC------CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHHHHhCC------CCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecc
Confidence 445556666544311 23789999999999999999885 4699999999999988876 4467777778
Q ss_pred ccCCCCCCCCccEEEecc-cccccc--ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 271 SRQLPYPSLSFDMVHCAQ-CGIIWD--KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~-~~~~~~--~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...++++ ++||+|++.. +++|+. ++...+|.++.++|+|||.++++.++.
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 8888877 8999999997 877773 455689999999999999999987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=131.89 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=85.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++........++++|+|+.+++.|+++ ++. +.+...|...++++ ++||+|+++.+++
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~ 198 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNI 198 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGG
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhh
Confidence 7899999999999999863333456799999999999999876 333 67788888899988 9999999998877
Q ss_pred cccccHH--HHHHHHHhcccCCeEEEEEeCCCC
Q 017377 292 IWDKKEG--IFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 292 ~~~~~~~--~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
|+.+... .++.++.++|||||++++++....
T Consensus 199 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 199 YEPDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp GCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 7743332 379999999999999999986543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=130.03 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=84.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ ++++.+...|...+++ +++||+|+++.+++|+
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 789999999999999999885 3689999999999988765 5577788888888877 7899999999887777
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. ++...++.++.++|+|||++++.....
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 4 344579999999999999988876533
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=117.59 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=90.6
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIG 267 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~ 267 (372)
...+.+.+.+...++ .+|||+|||+|.++..+++. ...++++|+++.+++.|+++ +++ +.+.
T Consensus 39 ~~~~~l~~~~~~~~~--------~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (194)
T 1dus_A 39 KGTKILVENVVVDKD--------DDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVV 107 (194)
T ss_dssp HHHHHHHHHCCCCTT--------CEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred hHHHHHHHHcccCCC--------CeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEE
Confidence 556677777765544 79999999999999999887 35799999999999988875 444 6666
Q ss_pred EeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+... ++++++||+|+++..+++...+...++.++.++|+|||.+++..+..
T Consensus 108 ~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 108 HSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp ECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 666655 45578999999987644323556679999999999999999998854
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=131.59 Aligned_cols=136 Identities=16% Similarity=0.066 Sum_probs=100.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-----CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-----PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-----~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+|||||||+|.++..+++.+ ...++++|+++.+++.|+++.. .+.+...+...+++++++||+|++..+++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 3799999999999999998875 3478999999999999987742 25577778888888888999999998887
Q ss_pred ccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCC--CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 292 IWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSS--SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 292 ~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~--~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
|+.+. ...+|.++.++|+|||+++++++........ .........+.+..+.++.+|+.+...
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 77432 3479999999999999999988644320000 000111124456667788888877543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=137.33 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCcHHHHHH----HhcCCce-eEEEEeeCCHHHHHHHHHc-----CCC-e--EEEEeeccCCC------CC
Q 017377 217 VQSVLDVGCGFGSFGAHL----VSLKLMA-VCVAVYEATGSQVQLALER-----GLP-A--MIGNFISRQLP------YP 277 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L----~~~~~~~-~~v~gvD~s~~~v~~A~~r-----gl~-~--~~~~~d~~~lp------~~ 277 (372)
..+|||||||+|.++..+ +.+.... ..++++|+|+.|++.|+++ +++ + .+...+...++ ++
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 368999999999876543 3332222 1359999999999988875 332 2 23344444333 67
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+++||+|+|..+++|+ +++..+|.+++|+|||||++++..+..
T Consensus 133 ~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp CCCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred CCceeEEEEeeeeeec-CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 8999999999987776 788889999999999999999987643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=128.88 Aligned_cols=131 Identities=19% Similarity=0.157 Sum_probs=98.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC--CCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ--LPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~--lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.++++.. .+...+... .++++++||+|++..+++|+ .
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~-~ 107 (230)
T 3cc8_A 34 KEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL-F 107 (230)
T ss_dssp SEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGGS-S
T ss_pred CcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhhc-C
Confidence 789999999999999999873 579999999999999987764 344445554 67888999999999887777 6
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCCC--------CCCCc---------chhhHHHHHHHHHHHhcCeeEEeee
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKPR--------GSSSS---------RKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~~--------~~~~~---------~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
++..++.++.++|+|||+++++.++.... ..+.. .......+.+..+.++.+++.+...
T Consensus 108 ~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 183 (230)
T 3cc8_A 108 DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVD 183 (230)
T ss_dssp CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEE
Confidence 67789999999999999999998864320 00000 0011123456677788898877544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=133.86 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=84.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+...|...+| ++||+|++..+++
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFE 166 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred CEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHH
Confidence 789999999999999999872 24799999999999999876 43 2566667776664 7899999999888
Q ss_pred ccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 292 IWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 292 ~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|+. ++...++.++.++|||||.+++.++....
T Consensus 167 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 167 HFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 876 56778999999999999999999886543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=124.63 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=85.0
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +..+.+...|...+++++++||+|+++. .|+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCC
Confidence 89999999999999999875 4699999999999988876 5677777788888888889999999964 3443
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 295 -KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 295 -~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++...++.++.++|+|||+++++++....
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 45668999999999999999999886544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=126.50 Aligned_cols=101 Identities=22% Similarity=0.147 Sum_probs=84.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecc-cccccc--
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQ-CGIIWD-- 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~-~~~~~~-- 294 (372)
.+|||||||+|.++..+++.+. .++++|+|+.+++.|+++...+.+...|...+++ +++||+|+|.. +++|+.
T Consensus 42 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~ 117 (239)
T 3bxo_A 42 SSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTT 117 (239)
T ss_dssp CEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSH
T ss_pred CeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCH
Confidence 7899999999999999998753 6899999999999999886667777788888887 68999999755 555553
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
++...+|.++.++|+|||.++++++...
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 118 EELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 3456799999999999999999876543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=129.16 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----CCeEEEE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGN 268 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~ 268 (372)
...+.+.+.+.+. .++ .+|||||||+|.++..+++.+. ..++++|+|+.|++.|+++. .++.+..
T Consensus 46 ~~~~~~~l~~~~~-~~~--------~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~ 114 (236)
T 1zx0_A 46 ETPYMHALAAAAS-SKG--------GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLK 114 (236)
T ss_dssp GHHHHHHHHHHHT-TTC--------EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEE
T ss_pred HHHHHHHHHhhcC-CCC--------CeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEe
Confidence 3455555555542 222 6899999999999999977542 47999999999999998763 4466777
Q ss_pred eeccCC--CCCCCCccEEEe-cccc-c-cc-cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQL--PYPSLSFDMVHC-AQCG-I-IW-DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~l--p~~~~sFDlV~~-~~~~-~-~~-~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...+ |+++++||+|++ .+.+ . .+ ..+...++.++.|+|||||++++.+.
T Consensus 115 ~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 777777 899999999999 4442 1 11 12334679999999999999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-14 Score=130.35 Aligned_cols=113 Identities=9% Similarity=-0.052 Sum_probs=86.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL 274 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l 274 (372)
...+.+.+.+...++ .+|||||||+|.++..|++++ ..|+++|+|+.|++.|+++.... ....+...+
T Consensus 32 ~~~~~il~~l~l~~g--------~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~ 99 (261)
T 3iv6_A 32 SDRENDIFLENIVPG--------STVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR-CVTIDLLDI 99 (261)
T ss_dssp CHHHHHHHTTTCCTT--------CEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS-CCEEEECCT
T ss_pred HHHHHHHHhcCCCCc--------CEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc-cceeeeeec
Confidence 345566666665555 799999999999999999885 46999999999999999874332 122233333
Q ss_pred CC-----CCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 275 PY-----PSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 275 p~-----~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+. .+++||+|+++.+++|+. ++...++.++.++| |||.++++.+.
T Consensus 100 ~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 100 TAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp TSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 32 257899999998888875 34557999999999 99999999764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=129.82 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~ 269 (372)
..+.+.+++.+.. ++ .+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++ +..+.+...
T Consensus 47 ~~~m~~~a~~~~~-~G--------~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (236)
T 3orh_A 47 TPYMHALAAAASS-KG--------GRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG 115 (236)
T ss_dssp HHHHHHHHHHHTT-TC--------EEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcc-CC--------CeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEee
Confidence 4556666666543 33 689999999999999998774 35789999999999999875 334555555
Q ss_pred eccC--CCCCCCCccEEEec-----cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 270 ISRQ--LPYPSLSFDMVHCA-----QCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 270 d~~~--lp~~~~sFDlV~~~-----~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+... .++++++||.|+.. ....|. .+...++.++.|+|||||.|++..
T Consensus 116 ~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~-~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hHHhhcccccccCCceEEEeeeecccchhhh-cchhhhhhhhhheeCCCCEEEEEe
Confidence 5433 35788999999752 333333 566789999999999999998753
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=131.14 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=91.8
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C----CCeEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G----LPAMI 266 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g----l~~~~ 266 (372)
...+.+.+.+.... .+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ + .++.+
T Consensus 70 ~~~~~~~~~~~~~~---------~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~ 137 (299)
T 3g2m_A 70 SEAREFATRTGPVS---------GPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTL 137 (299)
T ss_dssp HHHHHHHHHHCCCC---------SCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEE
T ss_pred HHHHHHHHhhCCCC---------CcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEE
Confidence 34555555554322 489999999999999999885 4589999999999999876 2 35778
Q ss_pred EEeeccCCCCCCCCccEEEeccccccccc--cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWDK--KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~~--~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...|...+++ +++||+|+|....+++.+ +...+|.++.++|||||+|++.+++...
T Consensus 138 ~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 138 VQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp EECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred EeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 8888888888 689999998755566543 3467999999999999999999887653
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-14 Score=134.93 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=76.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-------eEEEEeec------cCC--CCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-------AMIGNFIS------RQL--PYP 277 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-------~~~~~~d~------~~l--p~~ 277 (372)
..+|||||||+|..+..++..+ ...|+|+|+|+.|++.|+++ +.. +.+...++ ..+ +++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3789999999997666666553 24699999999999999876 322 23444443 222 467
Q ss_pred CCCccEEEeccccccc-c-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 278 SLSFDMVHCAQCGIIW-D-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~-~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+++||+|+|..++++. . ++...+|.++.++|||||+|++++++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999999875543 2 34568999999999999999999885
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=125.04 Aligned_cols=99 Identities=22% Similarity=0.293 Sum_probs=81.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+ ..++++|+|+.+++.|+++ +.++.+...|+..++++ ++||+|+|..+..++
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 789999999999999999875 4699999999999988765 55677888888888875 689999987543333
Q ss_pred -c-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 294 -D-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 294 -~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ++...++.++.++|+|||.+++..++
T Consensus 119 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 34567999999999999999998765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-12 Score=114.84 Aligned_cols=132 Identities=17% Similarity=0.090 Sum_probs=97.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|.++..+++.+. ...++++|+++.+++.|+++ ++ .+.+...
T Consensus 27 ~i~~~~l~~l~~~~~--------~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 97 (204)
T 3e05_A 27 EVRAVTLSKLRLQDD--------LVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA 97 (204)
T ss_dssp HHHHHHHHHTTCCTT--------CEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred HHHHHHHHHcCCCCC--------CEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 334456666665555 7999999999999999998853 36799999999999988875 44 3566666
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCee
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWS 349 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~ 349 (372)
+........++||+|++..... +...++.++.++|+|||.+++..+.. ...+.+..+.++.+|+
T Consensus 98 d~~~~~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 98 FAPEGLDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAVTL------------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp CTTTTCTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEECBH------------HHHHHHHHHHHHTTCE
T ss_pred ChhhhhhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEeccc------------ccHHHHHHHHHHCCCc
Confidence 6644443447899999986533 56679999999999999999987632 2344455666777774
Q ss_pred EE
Q 017377 350 LI 351 (372)
Q Consensus 350 ~~ 351 (372)
..
T Consensus 162 ~~ 163 (204)
T 3e05_A 162 VE 163 (204)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-13 Score=118.93 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC--CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP--YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp--~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++ ++.+...|+..++ +++++||+|+++...
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 7899999999999998887643 4689999999999988875 44 4667777766553 457899999998663
Q ss_pred ccccccHHHHHHHHHh--cccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKEGIFLIEADR--LLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~~~~L~el~r--vLkPGG~lvis~p~~~~ 323 (372)
.+..++...++.++.+ +|+|||.+++..+....
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERATTCA 158 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence 3333566779999999 99999999998875443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=127.85 Aligned_cols=102 Identities=23% Similarity=0.217 Sum_probs=84.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCC-CCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPY-PSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~-~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..+++.+. ..++++|+|+.+++.|+++ +. .+.+...|...+++ ++++||+|+|..++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 7899999999999999888742 4689999999999998876 22 35677778888888 68899999999886
Q ss_pred ccc---cccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIW---DKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~---~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
++. .++...+|.++.++|+|||++++++++.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 552 2556689999999999999999998763
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=115.98 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
.....+.+.+...++ .+|||+|||+|.++..+++.. ....++++|+++.+++.|+++ +++ ......
T Consensus 12 ~~~~~~~~~~~~~~~--------~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 82 (178)
T 3hm2_A 12 HVRALAISALAPKPH--------ETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82 (178)
T ss_dssp HHHHHHHHHHCCCTT--------EEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEEC
T ss_pred HHHHHHHHHhcccCC--------CeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEec
Confidence 344556666665554 789999999999999998874 347799999999999998875 444 224444
Q ss_pred ec-cCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 IS-RQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~-~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+. ..++..+++||+|+++.++.+ ..++.++.++|+|||++++.+..
T Consensus 83 d~~~~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 83 GAPRAFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CTTGGGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEECS
T ss_pred chHhhhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEeec
Confidence 44 233333389999999877554 45899999999999999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-14 Score=130.88 Aligned_cols=134 Identities=14% Similarity=0.066 Sum_probs=87.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC----------------------------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP---------------------------------- 263 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~---------------------------------- 263 (372)
.+|||||||+|.+...++.. ....|+|+|+|+.|++.|+++-..
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 78999999999954433332 224799999999999988763100
Q ss_pred -eEEEEeeccC-CCC-----CCCCccEEEecccccccc---ccHHHHHHHHHhcccCCeEEEEEeCCCCCC---CCCCcc
Q 017377 264 -AMIGNFISRQ-LPY-----PSLSFDMVHCAQCGIIWD---KKEGIFLIEADRLLKPGGYFVLTSPESKPR---GSSSSR 330 (372)
Q Consensus 264 -~~~~~~d~~~-lp~-----~~~sFDlV~~~~~~~~~~---~~~~~~L~el~rvLkPGG~lvis~p~~~~~---~~~~~~ 330 (372)
..+...|+.. +|+ ++++||+|+|+.++++.. ++...+|.++.|+|||||+|+++....... ......
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 2233446665 554 456799999998876643 456789999999999999999985322110 000000
Q ss_pred hhhHHHHHHHHHHHhcCeeEEee
Q 017377 331 KNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 331 e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.....-+.+..+.+..+|+.+..
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEEEe
Confidence 00111344566667788877643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-14 Score=130.80 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=90.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------CCC----------------------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLP---------------------------- 263 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------gl~---------------------------- 263 (372)
.+|||||||+|.++..++..+. ..|+|+|+|+.|++.|+++ +++
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 6899999999988877776653 4699999999999988763 110
Q ss_pred eE-EEEeeccC-CCC---CCCCccEEEecccccccc---ccHHHHHHHHHhcccCCeEEEEEeCCCCCC---CCCCcchh
Q 017377 264 AM-IGNFISRQ-LPY---PSLSFDMVHCAQCGIIWD---KKEGIFLIEADRLLKPGGYFVLTSPESKPR---GSSSSRKN 332 (372)
Q Consensus 264 ~~-~~~~d~~~-lp~---~~~sFDlV~~~~~~~~~~---~~~~~~L~el~rvLkPGG~lvis~p~~~~~---~~~~~~e~ 332 (372)
+. +...|... .|+ ..++||+|+++.+++|.. ++...+|.++.++|||||+|++++...... ........
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~ 214 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 214 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence 11 45556555 343 367999999999987753 344579999999999999999997543210 00000000
Q ss_pred hHHHHHHHHHHHhcCeeEEee
Q 017377 333 KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 333 ~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.-.-+.+....++.+++.+..
T Consensus 215 ~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 215 ALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp CCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCHHHHHHHHHHCCCEEEEE
Confidence 011234556667778877644
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=141.34 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=95.1
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----------CC-C
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----------GL-P 263 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----------gl-~ 263 (372)
...+.+.+.+....+ .+|||||||+|.++..|++.+.....|+|+|+|+.|++.|+++ +. +
T Consensus 708 qRle~LLelL~~~~g--------~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~n 779 (950)
T 3htx_A 708 QRVEYALKHIRESSA--------STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKS 779 (950)
T ss_dssp HHHHHHHHHHHHSCC--------SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSE
T ss_pred HHHHHHHHHhcccCC--------CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCc
Confidence 345555666654444 7999999999999999998863346799999999999999872 33 4
Q ss_pred eEEEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 264 AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 264 ~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.+...|+..+++++++||+|+|..+++|+.+.. ..++.++.++|||| .+++++|+.
T Consensus 780 VefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 780 ATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred eEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 6788889999999999999999999988885332 35899999999999 889988765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=113.87 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
....+.+.+.+...++ .+|||+|||+|.++..+++. ...++++|+++.+++.|+++ ++ ++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 89 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKD--------DVVVDVGCGSGGMTVEIAKR---CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89 (183)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEESCCCSHHHHHHHTT---SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4556667777765554 78999999999999999883 35799999999999988876 43 466666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCe
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw 348 (372)
.|... ++++++||+|+++.+ .+...++.++.++ |||.+++..+.. .....+....+..+|
T Consensus 90 ~d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~------------~~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 90 GRAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL------------ENAAKIINEFESRGY 149 (183)
T ss_dssp SCHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH------------HHHHHHHHHHHHTTC
T ss_pred CCccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc------------ccHHHHHHHHHHcCC
Confidence 66665 677789999999866 4556799999999 999999998632 123344555577778
Q ss_pred eEEeeecceEEEEe
Q 017377 349 SLIAQQDETFIWQK 362 (372)
Q Consensus 349 ~~~~~~~~~~iw~K 362 (372)
++...+.....+++
T Consensus 150 ~~~~~~~~~~~~~~ 163 (183)
T 2yxd_A 150 NVDAVNVFISYAKK 163 (183)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred eEEEEEeeeehhhc
Confidence 77766544444443
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=122.38 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=81.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecc-cccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQ-CGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~-~~~~ 292 (372)
.+|||||||+|.++..+++. ..++++|+|+.+++.|+++ +..+.+...+...++++ ++||+|++.. ++.|
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNY 109 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhh
Confidence 68999999999999999876 5689999999999988875 45577777788888876 8899999986 6666
Q ss_pred cc--ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 293 WD--KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 293 ~~--~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+. ++...++.++.++|+|||.+++..++
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 53 34557899999999999999997654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=127.06 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=90.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHH------HHHHHHHc----CC--
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS------QVQLALER----GL-- 262 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~------~v~~A~~r----gl-- 262 (372)
.....+.+.+...++ .+|||||||+|.++..+++.......++++|+|+. +++.|+++ ++
T Consensus 30 ~~~~~l~~~~~~~~~--------~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPG--------EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHTCCTT--------CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred HHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 445566666666555 79999999999999999987312257999999997 88888765 33
Q ss_pred CeEEEEee---ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 263 PAMIGNFI---SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 263 ~~~~~~~d---~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.+.+...| ...+|+++++||+|++..+++|+ +++..++..+.++++|||++++.+....
T Consensus 102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYF-ASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGS-SCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred ceEEEECChhhhccCCCCCCCEEEEEEccchhhC-CCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 35666666 45667888999999999988777 5555577777777788999999886553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=116.86 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=84.2
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEe
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNF 269 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~ 269 (372)
....+.+.+...++ .+|||||||+|.++..+++. ...++++|+++.+++.|+++ +++ +.+...
T Consensus 43 ~~~~~l~~l~~~~~--------~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 111 (204)
T 3njr_A 43 MRALTLAALAPRRG--------ELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111 (204)
T ss_dssp HHHHHHHHHCCCTT--------CEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHhcCCCCC--------CEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence 33455666666555 78999999999999999987 35699999999999988865 554 667777
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|.........+||+|++..++ +.. ++.++.++|||||.++++...
T Consensus 112 d~~~~~~~~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 112 TAPAALADLPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp CTTGGGTTSCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred chhhhcccCCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 766632234579999987542 455 999999999999999999774
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=126.21 Aligned_cols=97 Identities=22% Similarity=0.355 Sum_probs=83.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.. ....++++|+|+.+++.|++++..+.+...+...+|+++++||+|+++.+.
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------- 158 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------- 158 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-------
T ss_pred CEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-------
Confidence 689999999999999999873 235699999999999999998877788888888899999999999987541
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++.++.++|||||.+++.++....
T Consensus 159 -~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 159 -CKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp -CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred -hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 2589999999999999999987644
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-13 Score=116.74 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=91.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC-CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP-YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp-~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++.......++++|+++.+++.|+++ ++ ++.+...|...++ +.+++||+|+++..+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY 103 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc
Confidence 6899999999999999998721224799999999999988876 43 4677777777765 667899999998654
Q ss_pred ccc--------cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhc---CeeEEe
Q 017377 291 IIW--------DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKI---CWSLIA 352 (372)
Q Consensus 291 ~~~--------~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~l---cw~~~~ 352 (372)
+.. ..+...++.++.++|||||++++....... ........+..+.+.+ .|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~v~~ 169 (197)
T 3eey_A 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGD-------TGFEEKEKVLEFLKGVDQKKFIVQR 169 (197)
T ss_dssp CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTT-------TBSHHHHHHHHHHTTSCTTTEEEEE
T ss_pred ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCC-------CcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 221 123346999999999999999998764332 1123334455555443 365543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=117.44 Aligned_cols=114 Identities=13% Similarity=-0.032 Sum_probs=85.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~- 296 (372)
.+|||+|||+|.++..+++.+ .++|+|+|+.|++. ...+.+...|... ++++++||+|+++..+++..+.
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCT
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccc
Confidence 689999999999999999875 79999999999988 2234555566655 6777999999998664433221
Q ss_pred -------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 297 -------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 297 -------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
...++.++.+.| |||.+++..+.... -+.+..+.+..+|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~------------~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR------------PKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC------------HHHHHHHHHHTTCEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC------------HHHHHHHHHHCCCcEEEE
Confidence 246888999999 99999998764322 234556667778876644
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=126.38 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=95.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--C-------------------------------
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P------------------------------- 263 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~------------------------------- 263 (372)
..+|||||||+|.++..++..+. ..++++|+|+.+++.|+++.. +
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 36899999999999998887753 479999999999999876521 1
Q ss_pred -e-EEEEeeccCCC-CCC---CCccEEEecccccccc---ccHHHHHHHHHhcccCCeEEEEEeCCCCCC---CCCCcch
Q 017377 264 -A-MIGNFISRQLP-YPS---LSFDMVHCAQCGIIWD---KKEGIFLIEADRLLKPGGYFVLTSPESKPR---GSSSSRK 331 (372)
Q Consensus 264 -~-~~~~~d~~~lp-~~~---~sFDlV~~~~~~~~~~---~~~~~~L~el~rvLkPGG~lvis~p~~~~~---~~~~~~e 331 (372)
+ .+...|....+ +++ ++||+|+|+.++++.. ++...+|.++.++|||||++++.++..... .......
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 214 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS 214 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence 4 56666766653 355 8999999998877433 356679999999999999999988543220 0000000
Q ss_pred hhHHHHHHHHHHHhcCeeEEeee
Q 017377 332 NKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 332 ~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
....-+.+..+.+..+++.+...
T Consensus 215 ~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 215 LPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEEEE
Confidence 00112345666677888876544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=120.62 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=77.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCCCCC-CCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQLPYP-SLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~lp~~-~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++..++.+...|. ..+|++ +++||+|+++ .
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------~ 119 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------R 119 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------S
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------C
Confidence 789999999999999999884 469999999999999999866777887777 678888 8999999987 2
Q ss_pred cHHHHHHHHHhcccCCeEEE
Q 017377 296 KEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lv 315 (372)
+...++.++.++|||||.++
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEE
Confidence 33458999999999999999
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=127.25 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=80.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----------------------------------
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------------------------------- 261 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----------------------------------- 261 (372)
..+|||||||+|.++..++... ....|+|+|+++.+++.|+++.
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 3789999999999999999873 2357999999999999998762
Q ss_pred ----------------------------CCeEEEEeeccCCC-----CCCCCccEEEecccccccc-----ccHHHHHHH
Q 017377 262 ----------------------------LPAMIGNFISRQLP-----YPSLSFDMVHCAQCGIIWD-----KKEGIFLIE 303 (372)
Q Consensus 262 ----------------------------l~~~~~~~d~~~lp-----~~~~sFDlV~~~~~~~~~~-----~~~~~~L~e 303 (372)
-++.+...|....+ +.+++||+|+|..++.+++ ++...+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 13455555554333 5678999999998764432 245579999
Q ss_pred HHhcccCCeEEEEEeCC
Q 017377 304 ADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 304 l~rvLkPGG~lvis~p~ 320 (372)
+.++|+|||+|++...+
T Consensus 206 ~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHHEEEEEEEEEECCC
T ss_pred HHHHhCCCcEEEEecCC
Confidence 99999999999998653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=114.82 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=93.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++.+. ..++++|+++.+++.|+++ ++. +.+...|... +.+++||+|+++..+.+
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILAEI 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHHH
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcHHH
Confidence 7899999999999999988642 4689999999999988875 544 6666666544 45689999999865433
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee----cceEEEEecC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ----DETFIWQKTV 364 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~----~~~~iw~K~~ 364 (372)
...++.++.++|+|||++++++.... ..+.+..+.+..+++.+... ...++.+++.
T Consensus 138 ----~~~~l~~~~~~L~~gG~l~~~~~~~~------------~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~~ 197 (205)
T 3grz_A 138 ----LLDLIPQLDSHLNEDGQVIFSGIDYL------------QLPKIEQALAENSFQIDLKMRAGRWIGLAISRKH 197 (205)
T ss_dssp ----HHHHGGGSGGGEEEEEEEEEEEEEGG------------GHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECC
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEecCcc------------cHHHHHHHHHHcCCceEEeeccCCEEEEEEeccc
Confidence 35689999999999999999865432 13345566677788876543 2245555554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=128.50 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=81.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------------CCeEEEEeeccCCC----CC--CC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------------LPAMIGNFISRQLP----YP--SL 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------------l~~~~~~~d~~~lp----~~--~~ 279 (372)
.+|||||||+|.++..+++.+ ...++++|+|+.+++.|+++. ..+.+...|...++ ++ ++
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 689999999999999998753 357999999999999888752 13567777877775 54 45
Q ss_pred CccEEEeccccccc-c--ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 280 SFDMVHCAQCGIIW-D--KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 280 sFDlV~~~~~~~~~-~--~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+||+|+|+.++++. . ++...+|.++.++|||||+++++.++.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 99999999875443 1 334579999999999999999998853
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=124.96 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=83.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--CeEEEEeeccCCCCCC-----CCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--PAMIGNFISRQLPYPS-----LSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~~~~~~~d~~~lp~~~-----~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..+++.+. .++++|+|+.+++.|+++.. ++.+...|...++++. ..||+|+++.++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 6899999999999999998864 58999999999999988743 5667777776654332 349999999887
Q ss_pred ccccc-cHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 291 IIWDK-KEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 291 ~~~~~-~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+++.+ +...++.++.++|||||++++.++...
T Consensus 135 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 135 HHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp TTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 77642 567899999999999999999887543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-12 Score=110.92 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~ 267 (372)
......+.+.+...++ .+|||+|||+|.++..+++.+ ..++++|+++.+++.|+++ ++ .+.+.
T Consensus 19 ~~~~~~~~~~~~~~~~--------~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~ 87 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKN--------DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87 (192)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEE
Confidence 3445556666665554 799999999999999999875 5799999999999988874 44 45566
Q ss_pred EeeccCCCCCC-CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhc
Q 017377 268 NFISRQLPYPS-LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKI 346 (372)
Q Consensus 268 ~~d~~~lp~~~-~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~l 346 (372)
..+... ++++ ++||+|++...+. +...++.++.++|+|||.+++..+.. .....+..+.++.
T Consensus 88 ~~d~~~-~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~~~------------~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 88 EGDAPE-ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAILL------------ETKFEAMECLRDL 150 (192)
T ss_dssp ESCHHH-HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEECBH------------HHHHHHHHHHHHT
T ss_pred ecCHHH-hcccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEecCc------------chHHHHHHHHHHC
Confidence 665544 3333 5899999986543 34669999999999999999987632 2233445555667
Q ss_pred CeeEEe
Q 017377 347 CWSLIA 352 (372)
Q Consensus 347 cw~~~~ 352 (372)
+|+...
T Consensus 151 g~~~~~ 156 (192)
T 1l3i_A 151 GFDVNI 156 (192)
T ss_dssp TCCCEE
T ss_pred CCceEE
Confidence 764443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=117.41 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=92.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC--CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP--YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp--~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..+++... ...++|+|+++.+++.|+++ ++ ++.+...|+..++ +++++||+|+++..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~- 120 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 120 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-
Confidence 6899999999999999998753 35799999999999988765 44 4667777877776 77889999999854
Q ss_pred ccccc--------cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 291 IIWDK--------KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 291 ~~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+|.. ....++.++.++|+|||.+++..... .....+.+..+..+|......
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR------------GLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH------------HHHHHHHHHHHHCCCeeeecc
Confidence 33321 12469999999999999999986521 122344445566678766543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=123.96 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=77.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..++.+. ....|+++|+++.|++.|+++ ++ ++.+..+|+..+| +++||+|++...
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~--- 197 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL--- 197 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT---
T ss_pred CEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC---
Confidence 899999999998775554432 246799999999999999876 55 4667777777765 789999998643
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.++...++.++.|+|||||.+++....
T Consensus 198 -~~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 198 -AEPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp -CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred -ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 367778999999999999999998753
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=115.70 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=90.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccC-CCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQ-LPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+||| +|.++..++... ...++++|+++.+++.|+++ ++++.+...|... .++++++||+|+++-..+
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 789999999 999999999873 35799999999999988765 5567777766533 356678999999985433
Q ss_pred ccc------------------ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWD------------------KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~------------------~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+.. .....++.++.++|||||++++..+.. ......+....++.+|+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-----------EKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-----------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-----------HhHHHHHHHHHHHcCCceEEE
Confidence 321 112568999999999999999986632 123345556667778866553
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=117.30 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=92.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+. ..++++|+++. .+.+...+...+|+++++||+|++..++ |+ .+.
T Consensus 69 ~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~~ 130 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR------NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TNI 130 (215)
T ss_dssp SCEEEETCTTCHHHHHCC------SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SCH
T ss_pred CeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cCH
Confidence 689999999999988773 35889999987 3344556777889999999999999876 55 778
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeec-----ceEEEEecCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQD-----ETFIWQKTVD 365 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~-----~~~iw~K~~~ 365 (372)
..+|.++.++|+|||.++++++.... . ..+.+..+.+..+++.+.... ..++++|...
T Consensus 131 ~~~l~~~~~~L~~gG~l~i~~~~~~~-------~---~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~ 193 (215)
T 2zfu_A 131 RDFLEEANRVLKPGGLLKVAEVSSRF-------E---DVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGP 193 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECGGGC-------S---CHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECSS
T ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCC-------C---CHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecCc
Confidence 88999999999999999999865422 1 224456666788998876542 3577888653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=117.68 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC--CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP--YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp--~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..+++... ...++|+|+|+.+++.|+++ ++ ++.+...|+..++ +++++||.|++.+.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~- 117 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 117 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC-
Confidence 6899999999999999998742 36799999999999988765 54 4677777777766 77899999998754
Q ss_pred cccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKK--------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~--------~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+|... ...++.++.++|+|||.+++.+.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 233221 24689999999999999999865
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=116.15 Aligned_cols=108 Identities=22% Similarity=0.150 Sum_probs=86.8
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +++ +.+...
T Consensus 64 ~~~~~~~~~l~~~~~--------~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 132 (210)
T 3lbf_A 64 YMVARMTELLELTPQ--------SRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG 132 (210)
T ss_dssp HHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC
Confidence 345566666665554 799999999999999999873 5689999999999998875 443 667777
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|....+.++++||+|++..++.++.+ ++.++|+|||+++++.+.
T Consensus 133 d~~~~~~~~~~~D~i~~~~~~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 133 DGWQGWQARAPFDAIIVTAAPPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCGGGCCEEEEEESSBCSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred CcccCCccCCCccEEEEccchhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 77776666789999999987666642 588999999999999886
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=118.40 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=71.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHH----HHHHcCCCeEEEEeeccC----CCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ----LALERGLPAMIGNFISRQ----LPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~----~A~~rgl~~~~~~~d~~~----lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..+++... ...|+|+|+|+.|++ .|+++ .++.+...|+.. .+++ ++||+|+|+.
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC-
T ss_pred CEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec-
Confidence 7899999999999999988743 357999999998654 44433 245555556554 3454 8999999972
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. ..+...++.++.++|||||+++++.+
T Consensus 135 ~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 135 AQ--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cC--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 12 23344569999999999999999964
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=121.80 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=84.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++... ...++++|++ .+++.|+++ ++ .+.+...|....+++++ ||+|++..+++
T Consensus 167 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~ 243 (335)
T 2r3s_A 167 LKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243 (335)
T ss_dssp SEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGG
T ss_pred CEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhc
Confidence 7999999999999999998742 3579999999 999988875 44 36777777777777655 99999999988
Q ss_pred cccc-cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 292 IWDK-KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 292 ~~~~-~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++.+ +...+|+++.++|+|||++++.++....
T Consensus 244 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 244 HFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 8853 3357999999999999999999876544
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=118.39 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=89.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCC---CCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYP---SLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~---~~sFDlV~~~~ 288 (372)
..+|||||||+|.++..++... ....++++|+|+.+++.|+++ ++ ++.+...++.+++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 3789999999999999998643 235799999999999988764 55 467777777777764 68999999975
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
. .+...++.++.++|+|||++++..... .......+....+..+++...
T Consensus 150 ~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~----------~~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 150 V-----ARLSVLSELCLPLVKKNGLFVALKAAS----------AEEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEEECC-----------CHHHHHHHHHHHHHTTEEEEE
T ss_pred c-----CCHHHHHHHHHHhcCCCCEEEEEeCCC----------chHHHHHHHHHHHHcCCeEeE
Confidence 2 556779999999999999999874321 112234445555677776654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=117.25 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=79.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEEeeccCCC--CCCCC-ccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQLP--YPSLS-FDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl---~~~~~~~d~~~lp--~~~~s-FDlV~~~ 287 (372)
.+|||+|||+|.++..++..+. ..|+++|+|+.+++.|+++ ++ .+.+...|+..+. +++++ ||+|+++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 6899999999999998887753 4689999999999988865 54 5667777765543 24678 9999998
Q ss_pred cccccccccHHHHHHHH--HhcccCCeEEEEEeCCCC
Q 017377 288 QCGIIWDKKEGIFLIEA--DRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el--~rvLkPGG~lvis~p~~~ 322 (372)
.. ++. .+...++.++ .++|+|||.++++.....
T Consensus 133 ~~-~~~-~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PP-FHF-NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CC-CCC-ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 65 443 4556688888 778999999999887543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=114.90 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=92.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HH----cCC-CeEEEEeeccCCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LE----RGL-PAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~----rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
.+|||||||+|.++..+++.. ....++|+|+|+.|++.+ ++ .++ ++.+...|+..+|+++++ |.|+...
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~ 106 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLM 106 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEES
T ss_pred CEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEc
Confidence 789999999999999999874 346799999999988753 22 233 467888899999998877 8877432
Q ss_pred cc---c-cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC------CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 289 CG---I-IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS------SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 289 ~~---~-~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~------~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.. + |+.+++..++.++.++|||||.++++.....+.... +.......-+.+....+..+|++....
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 107 PWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp CCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence 11 1 122444679999999999999999976433321111 111111222335666788899877543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.4e-13 Score=120.46 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=79.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC-C--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL-P--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l-p--~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++... ...++|+|+|+.+++.|+++ ++ ++.+...|+..+ + +++++||.|++++.
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred CeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 6899999999999999998754 35799999999999887755 54 467777776663 3 78899999999754
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..|.... ..++.++.++|||||++++++..
T Consensus 115 -~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 115 -DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp -CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred -CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3343221 14999999999999999998763
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=117.34 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeec
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFIS 271 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~ 271 (372)
...+.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.|+++.. .+.+...|.
T Consensus 57 ~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~ 125 (231)
T 1vbf_A 57 NLGIFMLDELDLHKG--------QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDG 125 (231)
T ss_dssp HHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc
Confidence 445566666655554 799999999999999999875 568999999999999987732 566666666
Q ss_pred cCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.....++++||+|++..++.++. .++.++|+|||+++++.+...
T Consensus 126 ~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 126 TLGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp GGCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECSSS
T ss_pred ccccccCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcCCC
Confidence 65333468899999998876653 368999999999999987654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=128.55 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=95.7
Q ss_pred ccc-cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------
Q 017377 188 LVF-DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------ 260 (372)
Q Consensus 188 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------ 260 (372)
..| +.....+..+.+.+...++ .+|||||||+|.++..++.... ...++|+|+++.+++.|+++
T Consensus 152 ~vYGEt~~~~i~~il~~l~l~~g--------d~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frk 222 (438)
T 3uwp_A 152 EVYGETSFDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRK 222 (438)
T ss_dssp GGGGGTHHHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 455 3345667777788777666 7999999999999999886522 23589999999999887652
Q ss_pred -----CC---CeEEEEeeccCCCCCC--CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 261 -----GL---PAMIGNFISRQLPYPS--LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 261 -----gl---~~~~~~~d~~~lp~~~--~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|+ ++.+..+|+..+|+++ ..||+|+++.. +++ ++....|.++.|+|||||.|++..+....
T Consensus 223 r~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-~F~-pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 223 WMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNF-AFG-PEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp HHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCT-TCC-HHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred HHHHhCCCCCCeEEEECcccCCccccccCCccEEEEccc-ccC-chHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 33 4678888888888754 47999999854 333 67778899999999999999998765543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=124.89 Aligned_cols=101 Identities=23% Similarity=0.208 Sum_probs=84.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+ ..|+++|+++.+++.|+++ ++.+.+...|....+.++++||+|+|+..+++.
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 689999999999999999885 4799999999999988765 566777778888877777899999998764441
Q ss_pred ----cccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 294 ----DKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 294 ----~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.++...++.++.++|+|||.++++....
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2455679999999999999999997643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-12 Score=119.64 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=81.4
Q ss_pred CCeEEEeCCCC---cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccCCC-----------CCCC
Q 017377 217 VQSVLDVGCGF---GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLP-----------YPSL 279 (372)
Q Consensus 217 ~~~VLDIGCG~---G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~lp-----------~~~~ 279 (372)
..+|||||||+ |.++..+..... ...|+++|+|+.|++.|+++. -.+.+...|+.+.+ ++..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 37899999999 998776665432 367999999999999998762 34667777765421 3335
Q ss_pred CccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 280 SFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+||+|+++.+++|+.+ +...+|+++.++|+|||+|++++...
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 8999999988777754 36789999999999999999998765
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-12 Score=118.90 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=89.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEE-EeeccCCC---CCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIG-NFISRQLP---YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~-~~d~~~lp---~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||||.++..|++.+. ..|+|+|+|+.|++.+.++...+... ..++..++ ++..+||+|+|..++++.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl 164 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL 164 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH
Confidence 6899999999999999998853 46999999999999876654444322 12233333 344569999998665543
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCC-CCC----CC-CCC---cchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPE-SKP----RG-SSS---SRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~-~~~----~~-~~~---~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..+|.++.|+|+|||.+++..-+ ... .. ... +..+...-+.+.++++..+|....-
T Consensus 165 ----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 165 ----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp ----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45899999999999999987322 111 00 111 2233445566777888899987654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=123.83 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCC--CCCCCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL--PYPSLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~l--p~~~~sFDlV~~~ 287 (372)
+..+|||||||+|.++..+++... ...++++|+ +.+++.|+++ ++ .+.+...|.... |+| ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 347999999999999999998753 357999999 9999998876 33 366777777664 566 789999999
Q ss_pred cccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++++|.++. ..+|+++.++|+|||.+++.++....
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 9988886433 47899999999999999998875544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.4e-12 Score=115.86 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=78.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ ++. +.+...|...++ +++++||+|+++-.
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 7899999999999999998853 2799999999999988875 443 677777777665 56789999999743
Q ss_pred cccc-------------------cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIW-------------------DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~-------------------~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+.. ..+...++.++.++|+|||.+++..+.
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 2221 012346899999999999999997653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-12 Score=118.75 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=77.5
Q ss_pred CeEEEeCCCCcH----HHHHHHhc-CC-c-eeEEEEeeCCHHHHHHHHHcC-----------------------------
Q 017377 218 QSVLDVGCGFGS----FGAHLVSL-KL-M-AVCVAVYEATGSQVQLALERG----------------------------- 261 (372)
Q Consensus 218 ~~VLDIGCG~G~----~~~~L~~~-~~-~-~~~v~gvD~s~~~v~~A~~rg----------------------------- 261 (372)
.+|||+|||+|. ++..|++. +. . ...|+|+|+|+.|++.|++.-
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 689999999998 55556654 21 1 358999999999999998741
Q ss_pred -------CCeEEEEeeccCCCCC-CCCccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 017377 262 -------LPAMIGNFISRQLPYP-SLSFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 262 -------l~~~~~~~d~~~lp~~-~~sFDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~ 318 (372)
-.+.+...|....|++ .++||+|+|.++++++.++ ...++.++.++|+|||+|++..
T Consensus 187 ~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 187 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 0245566666666665 5789999999888877433 2579999999999999999853
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=118.20 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=77.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----------CC-CeEEEEeeccC-CC--CCCCCccE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----------GL-PAMIGNFISRQ-LP--YPSLSFDM 283 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----------gl-~~~~~~~d~~~-lp--~~~~sFDl 283 (372)
.+|||||||+|.++..|++... ...++|+|+|+.|++.|+++ +. ++.+...|+.. ++ +++++||.
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 6899999999999999998753 35799999999999987642 33 46677777775 66 78899999
Q ss_pred EEecccccccccc--------HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 284 VHCAQCGIIWDKK--------EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 284 V~~~~~~~~~~~~--------~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|++.+. ..|... ...+|.++.++|||||.|++.+..
T Consensus 127 v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 127 MFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 987643 233211 135899999999999999998653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=113.55 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHccC-CCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEE
Q 017377 194 KDYSRQIAEMIGLG-TDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~-~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~ 267 (372)
....+.+.+.+... .+ .+|||+|||+|.++..++.++. ..|+++|+|+.+++.|+++ ++ ++.+.
T Consensus 39 ~~~~~~l~~~l~~~~~~--------~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~ 108 (202)
T 2fpo_A 39 DRVRETLFNWLAPVIVD--------AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVV 108 (202)
T ss_dssp HHHHHHHHHHHHHHHTT--------CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHhhcCC--------CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEE
Confidence 44555555555431 22 6899999999999998887753 3689999999999988765 44 46677
Q ss_pred EeeccC-CCCCCCCccEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeCCC
Q 017377 268 NFISRQ-LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADR--LLKPGGYFVLTSPES 321 (372)
Q Consensus 268 ~~d~~~-lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~r--vLkPGG~lvis~p~~ 321 (372)
..|+.. ++.++++||+|++... ++. .....++.++.+ +|+|||.++++....
T Consensus 109 ~~D~~~~~~~~~~~fD~V~~~~p-~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 109 NSNAMSFLAQKGTPHNIVFVDPP-FRR-GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp CSCHHHHHSSCCCCEEEEEECCS-SST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred ECCHHHHHhhcCCCCCEEEECCC-CCC-CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 777655 5666789999999855 443 455567888865 699999999987754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=120.07 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC----Ce
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL----PA 264 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl----~~ 264 (372)
...-.+.+.+.++...+ .+|||+|||+|.++..+++.+. ...++++|+|+.+++.|+++ ++ .+
T Consensus 207 ~d~~~~~ll~~l~~~~~--------~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v 277 (375)
T 4dcm_A 207 LDIGARFFMQHLPENLE--------GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRC 277 (375)
T ss_dssp CCHHHHHHHHTCCCSCC--------SEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred ccHHHHHHHHhCcccCC--------CeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceE
Confidence 33444556666655443 7899999999999999998853 36799999999999988865 43 25
Q ss_pred EEEEeeccCCCCCCCCccEEEeccccccc---ccc-HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 265 MIGNFISRQLPYPSLSFDMVHCAQCGIIW---DKK-EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 265 ~~~~~d~~~lp~~~~sFDlV~~~~~~~~~---~~~-~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+...|... ++++++||+|+|+..+++. ... ...++.++.++|+|||.++++...
T Consensus 278 ~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 278 EFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 556666554 5678899999998765432 122 235899999999999999998753
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=124.59 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=79.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG- 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~- 290 (372)
.+|||||||+|.++..+++.+. ..++|+|+|+ +++.|+++ ++. +.+...++..+++++++||+|++....
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 7899999999999999998843 4789999994 88877754 554 778888999999999999999996432
Q ss_pred -ccccccHHHHHHHHHhcccCCeEEEE
Q 017377 291 -IIWDKKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 291 -~~~~~~~~~~L~el~rvLkPGG~lvi 316 (372)
.+.......++.++.|+|||||+++.
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 23336677899999999999999973
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=122.92 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~ 269 (372)
....+.+.+.+....+ .+|||+|||+|.++..+++.+.. ..++++|+|+.+++.|+++ ++...+...
T Consensus 182 d~~~~~ll~~l~~~~~--------~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~ 252 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTK--------GKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEVFAS 252 (343)
T ss_dssp CHHHHHHHHHSCTTCC--------SBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred cHHHHHHHHhcCcCCC--------CeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 3445566666644333 68999999999999999988633 4689999999999988865 556666655
Q ss_pred eccCCCCCCCCccEEEeccccccc----cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIW----DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~----~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|... +.+++||+|+|+..+++. ..+...++.++.++|+|||.+++..+.
T Consensus 253 d~~~--~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 253 NVFS--EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp STTT--TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cccc--cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 5543 447899999999765431 234467999999999999999998764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-12 Score=110.18 Aligned_cols=120 Identities=17% Similarity=0.078 Sum_probs=87.4
Q ss_pred chhHHHHHHHHHHcc-CCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--Ce
Q 017377 192 GVKDYSRQIAEMIGL-GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PA 264 (372)
Q Consensus 192 ~~~~~~~~l~~~l~~-~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~ 264 (372)
....+.+.+.+.+.. ..+ .+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++ ++ .+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~--------~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 96 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPYFDG--------GMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKF 96 (187)
T ss_dssp CCHHHHHHHHHHHCSCCSS--------CEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGE
T ss_pred CHHHHHHHHHHHHHhhcCC--------CCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcce
Confidence 345666677777642 233 789999999999999888864 25699999999999988765 43 35
Q ss_pred EEEEeeccCC----CCCCCCccEEEeccccccccccHHHHHHHH--HhcccCCeEEEEEeCCCCC
Q 017377 265 MIGNFISRQL----PYPSLSFDMVHCAQCGIIWDKKEGIFLIEA--DRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 265 ~~~~~d~~~l----p~~~~sFDlV~~~~~~~~~~~~~~~~L~el--~rvLkPGG~lvis~p~~~~ 323 (372)
.+...|.... ++++++||+|+++.. ++. .....++..+ .++|+|||.+++..+....
T Consensus 97 ~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 97 EVRKMDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EEEECcHHHHHHHHHhcCCCCCEEEECCC-CCc-hhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 6666665442 233688999999865 332 3445567777 8999999999999876543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-13 Score=116.75 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGN 268 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~ 268 (372)
.+..++.+.+.++ .+.+|||+|||+|.++..++...+.. .++++|+|+.|++.++++ |+...+..
T Consensus 36 ld~fY~~~~~~l~----------~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~ 104 (200)
T 3fzg_A 36 LNDFYTYVFGNIK----------HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF 104 (200)
T ss_dssp HHHHHHHHHHHSC----------CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE
T ss_pred HHHHHHHHHhhcC----------CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE
Confidence 3444555555552 23789999999999999998775554 899999999999988865 56533333
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.+.... .+.++||+|++...+++. ++...++.++.+.|+|||++|-..
T Consensus 105 ~d~~~~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 105 LNKESD-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ECCHHH-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred eccccc-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 333322 467889999999887777 666667779999999999876554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-12 Score=116.58 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=76.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeecc---CCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISR---QLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~---~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.-.....|+++|+++.|++.++++. .++.....+.. ..++..+++|+|++..
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~--- 155 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV--- 155 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC---
T ss_pred CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec---
Confidence 89999999999999999987334467999999999999887652 23444444432 3456778999998752
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.+++...++.++.++|||||+++++..
T Consensus 156 ~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 156 AQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp CCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 3335667799999999999999999864
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=121.40 Aligned_cols=112 Identities=16% Similarity=0.059 Sum_probs=88.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
...+.+.+.+...++ .+|||||||+|.++..+++.+.....++++|+++.+++.|+++ +++ +.+...
T Consensus 62 ~~~~~l~~~l~~~~~--------~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~ 133 (317)
T 1dl5_A 62 SLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (317)
T ss_dssp HHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHhcCCCCc--------CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 455566676666555 7999999999999999998754335699999999999988876 543 667777
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
|....+.++++||+|++..++.++. .++.++|||||.++++..+.
T Consensus 134 d~~~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 134 DGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBCBG
T ss_pred ChhhccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEECCC
Confidence 7776555668999999998877663 56889999999999987654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=120.10 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=95.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~ 289 (372)
+..+|||||||+|.++..+++... ...++++|+ +.+++.|+++ ++ .+.+...|.. .++|. +||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 347999999999999999998753 356889999 9999988865 43 3667777765 46665 8999999999
Q ss_pred ccccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchh-----------hHHHHHHHHHHHhcCeeEEe
Q 017377 290 GIIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKN-----------KSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 290 ~~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~-----------~~~w~~i~~l~~~lcw~~~~ 352 (372)
+++|.++ ...+|+++.++|+|||++++.++..... .+.... ....++++.+.++.+++.+.
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--CccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 8888543 3579999999999999999998755442 110000 00123455666777887763
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=123.04 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=77.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG- 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~- 290 (372)
.+|||||||+|.++..+++.+. ..++++|+++ +++.|+++ ++ .+.+...++..+++++++||+|+++...
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 142 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence 7899999999999999998752 4699999996 88887764 43 4677788888889988999999997532
Q ss_pred -ccccccHHHHHHHHHhcccCCeEEE
Q 017377 291 -IIWDKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 291 -~~~~~~~~~~L~el~rvLkPGG~lv 315 (372)
.+...+...++.++.++|||||.++
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 2223455679999999999999998
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=112.99 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=73.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccC----CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQ----LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~----lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++... ...++++|+++.+++.|+++. .++.+...|+.. ++++ ++||+|++..
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~~-- 151 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYEDV-- 151 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEECC--
T ss_pred CEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEec--
Confidence 7899999999999999998732 357999999999999887652 245666667766 6776 7899999321
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEE
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
.-......++.++.++|+|||+++++
T Consensus 152 -~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 152 -AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 11111256799999999999999997
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=111.01 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHccC--CCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEE
Q 017377 194 KDYSRQIAEMIGLG--TDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~--~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~ 267 (372)
....+.+.+.+... .+ .+|||+|||+|.++..+++.+.. ++++|+++.+++.|+++ ++++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~--------~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 93 (171)
T 1ws6_A 25 VRLRKALFDYLRLRYPRR--------GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVV 93 (171)
T ss_dssp HHHHHHHHHHHHHHCTTC--------CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHHHHhhccCC--------CeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEE
Confidence 45555565555431 33 68999999999999999988643 89999999999988865 4456666
Q ss_pred EeeccC-CC-C--CCCCccEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeCCCCC
Q 017377 268 NFISRQ-LP-Y--PSLSFDMVHCAQCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 268 ~~d~~~-lp-~--~~~sFDlV~~~~~~~~~~~~~~~~L~el~--rvLkPGG~lvis~p~~~~ 323 (372)
..|... ++ + .+++||+|+++..++ .+...++..+. ++|+|||.++++.+....
T Consensus 94 ~~d~~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 94 ALPVEVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CSCHHHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred eccHHHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 666544 22 1 134899999986533 23334666666 999999999999886543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-12 Score=115.11 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=70.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCC-HHHHHHH---HHc----CC-CeEEEEeeccCCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEAT-GSQVQLA---LER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s-~~~v~~A---~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
.+|||||||+|.++..++... ....++|+|+| +.|++.| +++ ++ ++.+...++..+|. ..||.|.+..
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~--~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF--ELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG--GGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh--hccCeEEEEE
Confidence 689999999999999998654 34779999999 7777776 433 44 46777788877753 2334444433
Q ss_pred cccccc-------ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 289 CGIIWD-------KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 289 ~~~~~~-------~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+.++|. .+...+|.++.|+|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 323332 122458999999999999999943
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.3e-12 Score=115.24 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=86.3
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc-----CC-CeEEEEee
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER-----GL-PAMIGNFI 270 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r-----gl-~~~~~~~d 270 (372)
..+.+.+...++ .+|||+|||+|.++..+++. +. ...++++|+++.+++.|+++ +. .+.+...|
T Consensus 86 ~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d 156 (258)
T 2pwy_A 86 SAMVTLLDLAPG--------MRVLEAGTGSGGLTLFLARAVGE-KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGK 156 (258)
T ss_dssp HHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESC
T ss_pred HHHHHHcCCCCC--------CEEEEECCCcCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 345555555554 79999999999999999987 32 35799999999999998876 53 46677778
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
....++++++||+|++. + +++..++.++.++|+|||++++..+.
T Consensus 157 ~~~~~~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 157 LEEAELEEAAYDGVALD-----L-MEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp GGGCCCCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred hhhcCCCCCCcCEEEEC-----C-cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 88878888899999984 2 34446899999999999999999874
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-12 Score=115.94 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=89.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCC---CCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYP---SLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~---~~sFDlV~~~~ 288 (372)
..+|||||||+|..+..++... ....|+++|+++.+++.|+++ ++. +.+...++.+++.. +++||+|+|..
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 4789999999999999998764 236799999999999988765 553 67777777776643 48999999974
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
+ .+...++.++.++|||||++++..... ...+...+....+.++++...
T Consensus 160 ~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~----------~~~e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 160 V-----APLCVLSELLLPFLEVGGAAVAMKGPR----------VEEELAPLPPALERLGGRLGE 208 (249)
T ss_dssp S-----CCHHHHHHHHGGGEEEEEEEEEEECSC----------CHHHHTTHHHHHHHHTEEEEE
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEEeCCC----------cHHHHHHHHHHHHHcCCeEEE
Confidence 3 345679999999999999999865321 112333444555667777654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=115.07 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=92.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.+.. .++++|+|+.+++.|+++ ++. +.+...|+..++. +++||+|+++..
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-- 201 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-- 201 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc--
Confidence 78999999999999999988643 699999999999988865 554 6677788877776 789999998632
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
.....++.++.++|+|||.+++.+...... ......+.+...++..+|+...
T Consensus 202 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ---VRTHEFIPKALSIAKDGAIIHYHNTVPEKL------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ---hhHHHHHHHHHHHCCCCeEEEEEEeecccc------ccccHHHHHHHHHHHcCCeeEE
Confidence 222458899999999999999987753210 1112345566777888888765
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=111.01 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=83.6
Q ss_pred HHHHHHHHHHc-cCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 195 DYSRQIAEMIG-LGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 195 ~~~~~l~~~l~-~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
...+.+.+.+. ...+ .+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++ ++. +.+.
T Consensus 17 ~~~~~~~~~l~~~~~~--------~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (177)
T 2esr_A 17 KVRGAIFNMIGPYFNG--------GRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL 86 (177)
T ss_dssp -CHHHHHHHHCSCCCS--------CEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE
T ss_pred HHHHHHHHHHHhhcCC--------CeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence 34445556655 3333 789999999999999999874 25799999999999988865 332 5566
Q ss_pred EeeccC-CCCCCCCccEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeCCCCC
Q 017377 268 NFISRQ-LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 268 ~~d~~~-lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~--rvLkPGG~lvis~p~~~~ 323 (372)
..|... ++..+++||+|+++.. ++. .....++..+. ++|+|||.+++..+....
T Consensus 87 ~~d~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 87 KMEAERAIDCLTGRFDLVFLDPP-YAK-ETIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp CSCHHHHHHHBCSCEEEEEECCS-SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred ECcHHHhHHhhcCCCCEEEECCC-CCc-chHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 666554 3444567999999854 222 33345677776 999999999999876543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=119.36 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=83.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..+++... ...++++|+ +.+++.|+++ ++ .+.+...|.. .+++. .||+|++..++
T Consensus 203 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 278 (369)
T 3gwz_A 203 AATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL 278 (369)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred CcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence 37999999999999999998743 356899999 9999988864 33 3667777766 56666 89999999998
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++|.++. ..+|+++.++|+|||++++.++....
T Consensus 279 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 279 HDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp GGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 8885433 37999999999999999998875543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.9e-12 Score=111.77 Aligned_cols=111 Identities=18% Similarity=0.160 Sum_probs=83.6
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|.++..+++.......++++|+++.+++.|+++ ++ ++.+...
T Consensus 64 ~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 135 (215)
T 2yxe_A 64 HMVGMMCELLDLKPG--------MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG 135 (215)
T ss_dssp HHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES
T ss_pred HHHHHHHHhhCCCCC--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 344556666655444 7999999999999999998742225799999999999998875 43 3556666
Q ss_pred eccCCCCC-CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 270 ISRQLPYP-SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 270 d~~~lp~~-~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+... +++ +++||+|++..++.++. .++.++|||||.+++..+..
T Consensus 136 d~~~-~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 136 DGTL-GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp CGGG-CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESSS
T ss_pred Cccc-CCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECCC
Confidence 6533 333 67899999998876653 47899999999999998754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=115.76 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcc-CCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----CCeEEEE
Q 017377 194 KDYSRQIAEMIGL-GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~-~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~ 268 (372)
..+.+.+.+.+.. .++ .+|||+|||+|.++..+++... ...++++|+++.+++.|+++- ..+.+..
T Consensus 15 ~~~~~~~~~~l~~~~~~--------~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 85 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSG--------TRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAA 85 (215)
T ss_dssp HHHHHHHHHHHTTCCTT--------EEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCH
T ss_pred HHHHHHHHHHhhhcCCC--------CEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEE
Confidence 3455566666644 333 7899999999999999998853 467999999999999888662 2334444
Q ss_pred eeccCCCCCC-----CCccEEEecccccccc------cc-------------------HHHHHHHHHhcccCCeE-EEEE
Q 017377 269 FISRQLPYPS-----LSFDMVHCAQCGIIWD------KK-------------------EGIFLIEADRLLKPGGY-FVLT 317 (372)
Q Consensus 269 ~d~~~lp~~~-----~sFDlV~~~~~~~~~~------~~-------------------~~~~L~el~rvLkPGG~-lvis 317 (372)
.|... ++++ ++||+|+++...++.. .. ...++.++.++|+|||+ +++.
T Consensus 86 ~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 86 ADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred cchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45444 5555 8999999974432211 00 05678899999999999 5554
Q ss_pred eC
Q 017377 318 SP 319 (372)
Q Consensus 318 ~p 319 (372)
.+
T Consensus 165 ~~ 166 (215)
T 4dzr_A 165 VG 166 (215)
T ss_dssp CT
T ss_pred EC
Confidence 43
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=118.91 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=77.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CC-CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.-.....++++|+++.+++.|+++ +. ++.+...|... ++++++||+|++.
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~---- 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD---- 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC----
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc----
Confidence 7999999999999999998611235799999999999988876 43 36677777665 6777899999983
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+ +++..++.++.++|+|||+++++++.
T Consensus 187 -~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 187 -I-PDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp -C-SCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred -C-cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2 34456999999999999999999874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=109.57 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=76.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..++... ....++++|+++.+++.|+++ ++. +.+...+....+ ++++||+|+++..
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS---
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc---
Confidence 689999999999999999863 235799999999999988764 543 667777776665 4678999998642
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...++.++.++|+|||++++...
T Consensus 142 --~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 --ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4456799999999999999999854
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=123.56 Aligned_cols=98 Identities=22% Similarity=0.202 Sum_probs=79.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.+. ..|+++|+| .|++.|+++ ++. +.+...++..++++ ++||+|++....+
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY 140 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred CEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence 7899999999999999998853 379999999 899887764 443 67888888888887 8999999965333
Q ss_pred ccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWD--KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~--~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
... .....++.++.++|+|||.++++..
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 322 4566799999999999999986543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=114.37 Aligned_cols=110 Identities=21% Similarity=0.122 Sum_probs=86.3
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----C---CCeEEEE
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----G---LPAMIGN 268 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----g---l~~~~~~ 268 (372)
...+.+.+...++ .+|||+|||+|.++..++........++++|+++.+++.|+++ + .++.+..
T Consensus 88 ~~~i~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~ 159 (280)
T 1i9g_A 88 AAQIVHEGDIFPG--------ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 159 (280)
T ss_dssp HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred HHHHHHHcCCCCC--------CEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3455555555554 7899999999999999998521235789999999999988875 3 2467777
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.|....++++++||+|++.. .++..++.++.++|+|||++++..+.
T Consensus 160 ~d~~~~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 160 SDLADSELPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp SCGGGCCCCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CchHhcCCCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 78888888888999999842 23445899999999999999999874
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=120.08 Aligned_cols=99 Identities=25% Similarity=0.318 Sum_probs=80.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..+++... ...++++|+ +.+++.|+++ ++ .+.+...|... +++. .||+|++..++
T Consensus 183 ~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl 258 (374)
T 1qzz_A 183 VRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFVL 258 (374)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESCG
T ss_pred CCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEeccc
Confidence 37999999999999999998753 357899999 9999988864 44 36677776654 4544 39999999998
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
++|.+.. ..+|+++.++|+|||++++.++
T Consensus 259 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 259 LNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8885433 4799999999999999999887
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=118.41 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=82.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++... ...++++|+ +.+++.|+++ ++. +.+...|....|+++. |+|++..+++
T Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh 267 (359)
T 1x19_A 192 KKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILY 267 (359)
T ss_dssp CEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGG
T ss_pred CEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhc
Confidence 7999999999999999998753 357899999 9999988865 442 6777778877777654 9999999988
Q ss_pred ccccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+|.++ ...+|+++.++|+|||++++.++..
T Consensus 268 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 268 SANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 88542 5679999999999999999988544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.2e-11 Score=108.67 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=77.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CCCC--CCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LPYP--SLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp~~--~~sFDlV~~~~ 288 (372)
.+|||||||+|..+..+++.......++++|+++.+++.|+++ ++. +.+...|+.. ++.. .++||+|++..
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~ 144 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA 144 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence 7899999999999999998743246799999999999988876 553 6666666544 3332 35899999864
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. ..+...++.++.++|||||++++.+...
T Consensus 145 ~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 145 D----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp C----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred c----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 2 2445568999999999999999986643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=117.41 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=101.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC-CCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP-YPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp-~~~~sFDlV~~~~~ 289 (372)
..+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ ++ .+.+...|....+ ++++.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 479999999999999999987543 67889999 7788877764 43 2667777766655 23467999999999
Q ss_pred ccccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcch--------------hhHHHHHHHHHHHhcCeeEEeee
Q 017377 290 GIIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRK--------------NKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 290 ~~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e--------------~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
+++|.++ ...+|+++.++|+|||++++.++........+... .....+.++.+.++.+|+.+...
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS 337 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec
Confidence 8888543 36799999999999999999886544422111000 00113345667788888887532
Q ss_pred ---cceEEEEec
Q 017377 355 ---DETFIWQKT 363 (372)
Q Consensus 355 ---~~~~iw~K~ 363 (372)
...++-+||
T Consensus 338 ~g~~~l~~a~kp 349 (352)
T 3mcz_A 338 IGRYTLLIGQRS 349 (352)
T ss_dssp ETTEEEEEEECC
T ss_pred cCceEEEEEecC
Confidence 223445555
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=114.35 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=86.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++.+.+...+... ++++++||+|+++... +
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~-~- 195 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA-E- 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH-H-
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcH-H-
Confidence 7899999999999999998764 799999999999988875 5545555544433 2456789999997432 2
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
....++.++.++|+|||++++++.... ..+.+....++.+|+....
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~~~~------------~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGILKD------------RAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEGG------------GHHHHHHHHHHTTCEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEeeccC------------CHHHHHHHHHHCCCEEEEE
Confidence 235689999999999999999876322 1344556667778887643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=112.00 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=76.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CCC-----CCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LPY-----PSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp~-----~~~sFDlV~ 285 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ ++. +.+...|+.. ++. ..++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~ 139 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF 139 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEE
Confidence 7899999999999999998532346799999999999988875 543 6666666533 332 227899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+.....++ .+...++..+ ++|+|||++++.+..
T Consensus 140 ~d~~~~~~-~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 140 LDHWKDRY-LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp ECSCGGGH-HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EcCCcccc-hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 98654444 3444567777 999999999997664
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=113.52 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=78.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC---------eEEEEeeccCC-------CCCCCCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP---------AMIGNFISRQL-------PYPSLSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~---------~~~~~~d~~~l-------p~~~~sF 281 (372)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++-.. +.+...|.... ++++++|
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred CEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 6899999999999999998853 36799999999999999876322 56777777665 3667899
Q ss_pred cEEEecccccc----------------c-cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 282 DMVHCAQCGII----------------W-DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 282 DlV~~~~~~~~----------------~-~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|+|+++-.... . ......++.++.++|+|||.+++..+
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999832211 1 12355789999999999999999865
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-11 Score=112.81 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=74.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeC-CHHHHHHHHHcC---------C------CeEEEEeeccCCC--C---
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEA-TGSQVQLALERG---------L------PAMIGNFISRQLP--Y--- 276 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~-s~~~v~~A~~rg---------l------~~~~~~~d~~~lp--~--- 276 (372)
.+|||||||+|.++..++..+. ..|+++|+ ++.+++.|+++. + .+.+..++..+.. +
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 6899999999999999988753 36899999 899998887652 1 2333333222211 1
Q ss_pred -CCCCccEEEeccccccccccHHHHHHHHHhccc---C--CeEEEEEeCC
Q 017377 277 -PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLK---P--GGYFVLTSPE 320 (372)
Q Consensus 277 -~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLk---P--GG~lvis~p~ 320 (372)
++++||+|+++.++++. ++...++.++.++|+ | ||.+++....
T Consensus 159 ~~~~~fD~Ii~~dvl~~~-~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH-QAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp HSCSSBSEEEEESCCSCG-GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred ccCCCCCEEEEeCcccCh-HHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 36789999998887665 677789999999999 9 9998776443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=109.67 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=77.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC------CeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL------PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl------~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ +. ++.+...|....+.++++||+|++.
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~ 158 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVG 158 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEEC
Confidence 7999999999999999987621225799999999999988764 22 4666667766665567889999998
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
....++ +.++.++|||||+++++.+...
T Consensus 159 ~~~~~~-------~~~~~~~LkpgG~lv~~~~~~~ 186 (226)
T 1i1n_A 159 AAAPVV-------PQALIDQLKPGGRLILPVGPAG 186 (226)
T ss_dssp SBBSSC-------CHHHHHTEEEEEEEEEEESCTT
T ss_pred CchHHH-------HHHHHHhcCCCcEEEEEEecCC
Confidence 765443 4688999999999999987543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=117.95 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGN 268 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~ 268 (372)
.|.+.+.+.+...++ .+|||||||+|.++..+++.+. ..++++|++ .+++.|+++ ++ .+.+..
T Consensus 25 ~y~~ai~~~~~~~~~--------~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~ 93 (328)
T 1g6q_1 25 SYRNAIIQNKDLFKD--------KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLR 93 (328)
T ss_dssp HHHHHHHHHHHHHTT--------CEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHhhHhhcCC--------CEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEE
Confidence 345555544444333 7899999999999999998753 468999999 588877654 44 367777
Q ss_pred eeccCCCCCCCCccEEEecccccc--ccccHHHHHHHHHhcccCCeEEEE
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGII--WDKKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~--~~~~~~~~L~el~rvLkPGG~lvi 316 (372)
.++..+++++++||+|++....++ .......++.++.++|+|||.++.
T Consensus 94 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 94 GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 888888888889999999743222 225566799999999999999983
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-12 Score=107.91 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=75.2
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~ 288 (372)
.+|||+|||+|.++..+++. +. ...++++|+++ +++. ..+.+...|....+ +++++||+|+++.
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~-~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGG-KGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCT-TCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHHhCC-CCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence 68999999999999999887 32 35789999998 6543 34566666777766 7788999999986
Q ss_pred ccccccccH-----------HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 289 CGIIWDKKE-----------GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 289 ~~~~~~~~~-----------~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+++. .+. ..++.++.++|+|||.++++.+..
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 97 APNMS-GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred Ccccc-CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 64433 222 578999999999999999988754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=112.32 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~ 268 (372)
+...+.+.+.+. .+ ..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +++ +.+..
T Consensus 96 e~l~~~~l~~~~-~~--------~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~ 165 (276)
T 2b3t_A 96 ECLVEQALARLP-EQ--------PCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ 165 (276)
T ss_dssp HHHHHHHHHHSC-SS--------CCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHHHHhcc-cC--------CCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 344555555554 22 2689999999999999998763 235799999999999988875 543 66666
Q ss_pred eeccCCCCCCCCccEEEeccccc-------------ccc-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGI-------------IWD-----------KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~-------------~~~-----------~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.|... ++++++||+|+++...+ |.+ .....++.++.++|+|||++++...
T Consensus 166 ~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 166 SDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp CSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 66544 34467899999983321 111 2335688999999999999999854
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=118.91 Aligned_cols=112 Identities=23% Similarity=0.229 Sum_probs=86.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGN 268 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~ 268 (372)
.|.+.+.+.+...++ .+|||||||+|.++..+++.+. ..++++|+|+ +++.|+++ ++ .+.+..
T Consensus 37 ~y~~~i~~~l~~~~~--------~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~ 105 (348)
T 2y1w_A 37 TYQRAILQNHTDFKD--------KIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIP 105 (348)
T ss_dssp HHHHHHHHTGGGTTT--------CEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHhccccCCc--------CEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEE
Confidence 455566665554444 7999999999999999998743 4789999996 77777654 54 367777
Q ss_pred eeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.+...++++ ++||+|++....+|+. +.....+.++.++|+|||.+++..
T Consensus 106 ~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 106 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp SCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred cchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 788887766 6899999987777775 444568889999999999999653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=120.69 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=79.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||||||+|.++..++++... ..++++|+ +.+++.|++. ..+.+...|... ++++ ||+|++..+++||. +
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~-d 282 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS-D 282 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC-H
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC-H
Confidence 379999999999999999988643 56888999 9999887653 246677777766 6664 99999999988884 4
Q ss_pred HH--HHHHHHHhcccCCeEEEEEeCCC
Q 017377 297 EG--IFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~--~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+. .+|+++.++|+|||++++.++..
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 44 79999999999999999987543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=112.42 Aligned_cols=108 Identities=23% Similarity=0.303 Sum_probs=84.7
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEe
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER----GLP--AMIGNF 269 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~ 269 (372)
...+...+...++ .+|||+|||+|.++..+++. +. ...++++|+++.+++.|+++ +++ +.+...
T Consensus 82 ~~~i~~~~~~~~~--------~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~ 152 (255)
T 3mb5_A 82 AALIVAYAGISPG--------DFIVEAGVGSGALTLFLANIVGP-EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK 152 (255)
T ss_dssp HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS
T ss_pred HHHHHHhhCCCCC--------CEEEEecCCchHHHHHHHHHhCC-CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 3355556655554 79999999999999999987 42 36799999999999998876 543 667766
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|... ++++++||+|+++. +++..++.++.++|+|||.+++..+.
T Consensus 153 d~~~-~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 153 DIYE-GIEEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp CGGG-CCCCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred chhh-ccCCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 7664 37788999999852 34456899999999999999999774
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-11 Score=108.84 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=70.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH----HHHHHcCCCeEEEEeeccCCC---CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV----QLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v----~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++.......|+++|+++.|+ +.|+++ .++.+...|+.... ...++||+|++....
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~ 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEecCCC
Confidence 7999999999999999988632345799999999875 445444 35666666665432 124689999997431
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
......++..+.++|||||+|+++...
T Consensus 157 ---~~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 157 ---PDQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp ---TTHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred ---hhHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 222333455667799999999998643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-11 Score=114.08 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=94.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~ 273 (372)
.+...+...++ .+|||+|||+|..+..+++.......++++|+++.+++.++++ ++ ++.+...|...
T Consensus 109 l~~~~l~~~~g--------~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~ 180 (315)
T 1ixk_A 109 YPPVALDPKPG--------EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180 (315)
T ss_dssp HHHHHHCCCTT--------CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred HHHHHhCCCCC--------CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhh
Confidence 34455555555 7899999999999999998643346799999999999888765 55 46677777777
Q ss_pred CCCCCCCccEEEecc-----cccccccc----------------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchh
Q 017377 274 LPYPSLSFDMVHCAQ-----CGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKN 332 (372)
Q Consensus 274 lp~~~~sFDlV~~~~-----~~~~~~~~----------------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~ 332 (372)
++..+++||+|++.- ..++..++ ...+|.++.++|||||++++++...... +.
T Consensus 181 ~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------En 254 (315)
T 1ixk_A 181 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------EN 254 (315)
T ss_dssp GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------GT
T ss_pred cccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH------Hh
Confidence 665567899999841 11111111 1468999999999999999998755431 22
Q ss_pred hHHHHHHHHHHHhcCeeEE
Q 017377 333 KSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 333 ~~~w~~i~~l~~~lcw~~~ 351 (372)
. ..++.+.++.+++.+
T Consensus 255 e---~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 255 E---FVIQWALDNFDVELL 270 (315)
T ss_dssp H---HHHHHHHHHSSEEEE
T ss_pred H---HHHHHHHhcCCCEEe
Confidence 1 234556566677665
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=117.55 Aligned_cols=99 Identities=25% Similarity=0.347 Sum_probs=80.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++... ...++++|+ +.+++.|+++ ++ .+.+...|..+ +++. .||+|++..+++
T Consensus 185 ~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~ 260 (360)
T 1tw3_A 185 RHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVLL 260 (360)
T ss_dssp SEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCGG
T ss_pred cEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccccc
Confidence 7999999999999999998854 356889999 8899888764 44 46677666654 4554 499999999988
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~-~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+|.++. ..+|+++.++|+|||++++.++.
T Consensus 261 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 261 NWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 885433 47999999999999999999876
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=111.36 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
......+.+.+...++ .+|||||||+|.++..+++... ..++++|+++.+++.|+++ ++ ++.+..
T Consensus 77 ~~~~~~~~~~l~~~~~--------~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~ 146 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPG--------MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL 146 (235)
T ss_dssp HHHHHHHHHHHTCCTT--------CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3455566666665554 7899999999999999998743 4689999999999998875 43 355555
Q ss_pred eeccCCCCCCC-CccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 269 FISRQLPYPSL-SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 269 ~d~~~lp~~~~-sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.|. ..+++++ .||+|++..++.++. .++.++|+|||.++++.++..
T Consensus 147 ~d~-~~~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 147 GDG-SKGFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp SCG-GGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECSSS
T ss_pred CCc-ccCCCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEecCC
Confidence 554 4455554 499999997766553 378899999999999988543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-12 Score=115.18 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=77.0
Q ss_pred CeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC---CCCC-CCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---PYPS-LSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l---p~~~-~sFDlV~~~~~~ 290 (372)
.+|||||||+|..+..|++. ......|+++|+++.+++.|+....++.+...|.... ++.+ .+||+|++...
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~- 161 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA- 161 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc-
Confidence 68999999999999999886 1234679999999999988874444577777777663 5434 47999998654
Q ss_pred ccccccHHHHHHHHHh-cccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADR-LLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~r-vLkPGG~lvis~p 319 (372)
| .+...+|.++.+ +|||||++++.+.
T Consensus 162 -~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 3 355679999997 9999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=109.43 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=77.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC----ceeEEEEeeCCHHHHHHHHHc----C------CCeEEEEeeccCCC----CCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL----MAVCVAVYEATGSQVQLALER----G------LPAMIGNFISRQLP----YPSL 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~----~~~~v~gvD~s~~~v~~A~~r----g------l~~~~~~~d~~~lp----~~~~ 279 (372)
.+|||||||+|.++..+++... ....++++|+++.+++.|+++ + .++.+...|....+ .+.+
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 7899999999999999998743 235799999999999988876 3 24667777776654 5567
Q ss_pred CccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 280 SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+||+|++...+.+ ++.++.++|+|||.+++..+.
T Consensus 162 ~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 162 LFDAIHVGASASE-------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CEEEEEECSBBSS-------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CcCEEEECCchHH-------HHHHHHHhcCCCcEEEEEEcc
Confidence 8999999876544 357889999999999999874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=125.38 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=77.9
Q ss_pred CCeEEEeCCC------CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC------CCCccEE
Q 017377 217 VQSVLDVGCG------FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP------SLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG------~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~------~~sFDlV 284 (372)
+.+||||||| +|..+..+++.......|+++|+|+.|. ....++.+...|+.++||. +++||+|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 3789999999 6666777766532346799999999983 2344677888888888887 7899999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+|..+ +++ .+...+|.++.++|||||++++.+..
T Consensus 293 isdgs-H~~-~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 293 IDDGS-HIN-AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EECSC-CCH-HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EECCc-ccc-hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99743 444 66778999999999999999998765
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9e-13 Score=120.53 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=78.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.+ ..++++|+|+.+++.|+++ ++ ++.+...|...++ ++++||+|+++..+.
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 789999999999999999885 5689999999999988765 54 4677777777766 568999999987655
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+. .+....+.++.++|+|||.+++..
T Consensus 156 ~~-~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GP-DYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SG-GGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred Cc-chhhhHHHHHHhhcCCcceeHHHH
Confidence 54 444447778999999999977654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=111.60 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=73.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHH----HHHHcCCCeEEEEeeccC---CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ----LALERGLPAMIGNFISRQ---LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~----~A~~rgl~~~~~~~d~~~---lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++.......++++|+++.+++ .|+++ .++.+...|+.. +++.+++||+|++...
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~- 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA- 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC-
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC-
Confidence 78999999999999999987212256899999987654 44443 456676667665 4556789999999643
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..+....++.++.++|||||+++++...
T Consensus 157 --~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 157 --QPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp --CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred --CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 2233345688899999999999997654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=116.59 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=81.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C--CCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G--LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++... ...++++|+ +.+++.|+++ + -.+.+...|... +++ ++||+|++..+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 6899999999999999998753 357899999 9999988875 2 246677777665 565 6799999999988
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 292 IWDKKE-GIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 292 ~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+|.++. ..+|+++.++|+|||++++.++...
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 885332 3799999999999999999987543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=110.79 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=76.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC-C-CCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL-P-YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l-p-~~~~sFDlV~~~~ 288 (372)
.+|||||||+|..+..|++.......++++|+++.+++.|+++ ++. +.+...|+.+. + +++++||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4899999999999999998633346799999999999988765 544 56666655433 2 3468999999864
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ..+...++.++.++|||||++++.+..
T Consensus 138 ~----~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 138 S----PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp C----TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred c----HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3 234456899999999999999986543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=115.54 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=76.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--cCC--CeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--RGL--PAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--rgl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..+++... ...++++|++ .++..+.. .+. .+.+...|.. .++| +||+|++..++++|
T Consensus 186 ~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~ 260 (348)
T 3lst_A 186 GTVADVGGGRGGFLLTVLREHP-GLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILHNW 260 (348)
T ss_dssp EEEEEETCTTSHHHHHHHHHCT-TEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGGGS
T ss_pred ceEEEECCccCHHHHHHHHHCC-CCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhccCC
Confidence 7999999999999999998754 3568999994 44441110 122 3667767764 4555 89999999998888
Q ss_pred cccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 294 DKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 294 ~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++. ..+|+++.++|||||++++.+.....
T Consensus 261 ~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 261 GDEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp CHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 5432 57999999999999999998875443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=117.99 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=81.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ ..+.+...|... |+|++ |+|++..++++|.++
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~ 277 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE 277 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH
Confidence 479999999999999999987533 56889999 8888877654 356777777765 77754 999999998888643
Q ss_pred H-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 E-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 ~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. ..+|++++++|+|||++++.+.....
T Consensus 278 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 278 HCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 3 47899999999999999999876443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=110.44 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=76.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------------CC-CeEEEEeeccC-CC--CCCCCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------------GL-PAMIGNFISRQ-LP--YPSLSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------------gl-~~~~~~~d~~~-lp--~~~~sF 281 (372)
.+|||||||+|.++..++..+. ...++|+|+|+.+++.|+++ ++ ++.+...|+.. ++ +++++|
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 6899999999999999998864 35799999999999888653 44 46677777765 55 778999
Q ss_pred cEEEecccccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 282 DMVHCAQCGIIWDKK--------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 282 DlV~~~~~~~~~~~~--------~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.|+.... -.|... ...++.++.++|+|||.|++.+.
T Consensus 130 d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 130 SKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 99986532 122110 03699999999999999999754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=110.31 Aligned_cols=103 Identities=16% Similarity=-0.004 Sum_probs=74.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-CceeEEEEeeCCHHHHHHHHHc---C----C--C------------------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALER---G----L--P------------------------ 263 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-~~~~~v~gvD~s~~~v~~A~~r---g----l--~------------------------ 263 (372)
.+|||+|||+|.++..++... .....++|+|+|+.+++.|+++ . + .
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR 132 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhh
Confidence 689999999999999998761 1346799999999999998854 1 1 1
Q ss_pred -eE-------------EEEeeccCCCC-----CCCCccEEEecccccccc--------ccHHHHHHHHHhcccCCeEEEE
Q 017377 264 -AM-------------IGNFISRQLPY-----PSLSFDMVHCAQCGIIWD--------KKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 264 -~~-------------~~~~d~~~lp~-----~~~sFDlV~~~~~~~~~~--------~~~~~~L~el~rvLkPGG~lvi 316 (372)
+. +...|...... ..++||+|+|+...++.. +....++.++.++|+|||++++
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 133 RLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp HHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred hhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 22 55555544221 345899999985544332 2234789999999999999999
Q ss_pred EeCC
Q 017377 317 TSPE 320 (372)
Q Consensus 317 s~p~ 320 (372)
+...
T Consensus 213 ~~~~ 216 (250)
T 1o9g_A 213 TDRS 216 (250)
T ss_dssp EESS
T ss_pred eCcc
Confidence 5443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-11 Score=116.89 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=81.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||||||+|.++..+++.... ..++++|+ +.+++.|++. ..+.+...|+.. |+|.+ |+|++..++++|.++
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ 275 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence 379999999999999999987533 56889999 8888777654 357777777776 77754 999999998888643
Q ss_pred -HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 -EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 -~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...+|++++++|+|||+++|.+.....
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 347899999999999999998875443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-11 Score=112.61 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccCCCC--CCCCccEEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQLPY--PSLSFDMVH 285 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~lp~--~~~sFDlV~ 285 (372)
+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++. ..+.+...|....+. ++++||+|+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 4799999999999999999763 3467999999999999998753 246666666655443 478999999
Q ss_pred eccccccccccH----HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 286 CAQCGIIWDKKE----GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 286 ~~~~~~~~~~~~----~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
+.... ++.+.. ..+++++.++|+|||.+++....... .......+....++.+|..+
T Consensus 175 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--------~~~~~~~~~~~l~~~GF~~v 235 (304)
T 3bwc_A 175 IDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--------DLELIEKMSRFIRETGFASV 235 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTT--------CHHHHHHHHHHHHHHTCSEE
T ss_pred ECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc--------chHHHHHHHHHHHhCCCCcE
Confidence 97543 332222 46899999999999999998654321 11223334444466666543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-12 Score=109.77 Aligned_cols=87 Identities=23% Similarity=0.121 Sum_probs=72.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCC---CCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPY---PSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~---~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||. + .+|+|+.|++.|+++.. .+.+...++..+++ ++++||+|+|+.+++|+
T Consensus 14 ~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~ 76 (176)
T 2ld4_A 14 QFVAVVWDKS----------------S-PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST 76 (176)
T ss_dssp SEEEEEECTT----------------S-CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC
T ss_pred CEEEEecCCc----------------e-eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc
Confidence 7999999996 1 27999999999998742 46677778888887 88999999999886666
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.++...+|++++|+|||||++++..+..
T Consensus 77 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 104 (176)
T 2ld4_A 77 TLHSAEILAEIARILRPGGCLFLKEPVE 104 (176)
T ss_dssp CCCCHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEEcccc
Confidence 3566789999999999999999987643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=109.72 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=77.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCC-C-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL-P-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~l-p-~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++.. ....++++|+++.+++.|+++ ++ .+.+...|+... + ..+++||+|++...
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 789999999999999999843 246799999999999988865 44 466777776543 3 33689999997632
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..+...++.++.++|+|||++++....
T Consensus 152 ----~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 152 ----KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp ----SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred ----HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 244556999999999999999986543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=119.22 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH-------HHc----C-
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA-------LER----G- 261 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A-------~~r----g- 261 (372)
......+.+.+....+ .+|||||||+|.++..++.... ...++|+|+++.+++.| +++ |
T Consensus 228 p~~v~~ml~~l~l~~g--------~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl 298 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKG--------DTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGM 298 (433)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC
Confidence 3445566666655554 7999999999999999998621 24689999999998887 543 5
Q ss_pred -C-CeEEEEeeccCC--CC--CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 262 -L-PAMIGNFISRQL--PY--PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 262 -l-~~~~~~~d~~~l--p~--~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
. ++.+...+.... ++ ..++||+|+++..+ +.++...+|.++.++|||||.+++..+...
T Consensus 299 ~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 299 RLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp CCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred CCCceEEEEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 2 355554433222 12 24789999997554 335666789999999999999999865443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=117.41 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=80.4
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
...+|||||||+|.++..+++... ...++++|+ +.+++.|++. ..+.+...|... ++|+ ||+|++..+++||.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~- 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT- 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC-
T ss_pred cCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCC-
Confidence 347999999999999999998743 356899999 9999888754 236666667655 5653 99999999988884
Q ss_pred cHH--HHHHHHHhcccC---CeEEEEEeCCCC
Q 017377 296 KEG--IFLIEADRLLKP---GGYFVLTSPESK 322 (372)
Q Consensus 296 ~~~--~~L~el~rvLkP---GG~lvis~p~~~ 322 (372)
+.. .+|+++.++||| ||++++.++...
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 444 799999999999 999999987543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=105.56 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=71.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc-eeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---------------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------------------- 275 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~-~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------------------- 275 (372)
.+|||+|||+|.++..++++... ...++|+|+++.+ ....+.+...|....+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 68999999999999999987432 4679999999832 1123556666776665
Q ss_pred ----CCCCCccEEEecccccccc---ccH-------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 276 ----YPSLSFDMVHCAQCGIIWD---KKE-------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 276 ----~~~~sFDlV~~~~~~~~~~---~~~-------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+++++||+|+|+.+..+.. .+. ..++.++.++|||||.+++....
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5678999999986533211 121 13788999999999999997653
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=116.23 Aligned_cols=118 Identities=21% Similarity=0.097 Sum_probs=88.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
.....+.......++ .+|||+|||+|.++..++........++|+|+++.+++.|+++ ++ .+.+...
T Consensus 190 ~la~~l~~~~~~~~~--------~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~ 261 (354)
T 3tma_A 190 VLAQALLRLADARPG--------MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA 261 (354)
T ss_dssp HHHHHHHHHTTCCTT--------CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEEC
T ss_pred HHHHHHHHHhCCCCC--------CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeC
Confidence 344455555554444 7899999999999999988641235689999999999988875 55 4778888
Q ss_pred eccCCCCCCCCccEEEeccccccc-c------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIW-D------KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~-~------~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+.+++.+.+.||+|+++-..... . .....++.++.++|+|||.+++.+++
T Consensus 262 D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 262 DARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 888888878889999997331111 1 11246899999999999999999773
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-11 Score=106.28 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=72.6
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeeccCC---CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQL---PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~~l---p~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++. +. ...++++|+++.+++.+.++ ..++.+...|.... +...++||+|++...
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~- 152 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA- 152 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC-
T ss_pred CEEEEEeccCCHHHHHHHHHhCC-CeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC-
Confidence 68999999999999999976 32 24689999999998877654 23466666666552 112368999998643
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.......++.++.++|||||++++...
T Consensus 153 --~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 153 --QPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 222333459999999999999999843
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-11 Score=110.70 Aligned_cols=107 Identities=22% Similarity=0.221 Sum_probs=82.6
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeecc
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISR 272 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~ 272 (372)
.+.+.+...++ .+|||+|||+|.++..+++.-.....++++|+++.+++.|+++ ++ .+.+...|..
T Consensus 103 ~i~~~~~~~~~--------~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 174 (277)
T 1o54_A 103 FIAMMLDVKEG--------DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 174 (277)
T ss_dssp HHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred HHHHHhCCCCC--------CEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 44555555444 7899999999999999998721235799999999999998876 54 4566666665
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.. +++++||+|+++. +++..++.++.++|+|||.+++..+.
T Consensus 175 ~~-~~~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 175 EG-FDEKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp GC-CSCCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred Hc-ccCCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 55 6678999999852 34446899999999999999999873
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=115.54 Aligned_cols=109 Identities=20% Similarity=0.134 Sum_probs=79.6
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcC--------------
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERG-------------- 261 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rg-------------- 261 (372)
...+.+.+...++ .+|||+|||+|.++..++.. +. ...++++|+++.+++.|+++.
T Consensus 94 ~~~~l~~l~~~~g--------~~VLDiG~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~ 164 (336)
T 2b25_A 94 INMILSMMDINPG--------DTVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE 164 (336)
T ss_dssp HHHHHHHHTCCTT--------CEEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred HHHHHHhcCCCCC--------CEEEEeCCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHHhhcccccccccc
Confidence 4455566665555 79999999999999999987 43 356899999999999988751
Q ss_pred --CCeEEEEeeccCC--CCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 262 --LPAMIGNFISRQL--PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 262 --l~~~~~~~d~~~l--p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.++.+...|.... ++++++||+|++... . +..++.++.++|+|||.+++..+.
T Consensus 165 ~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~-~-----~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 165 WPDNVDFIHKDISGATEDIKSLTFDAVALDML-N-----PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp CCCCEEEEESCTTCCC-------EEEEEECSS-S-----TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred cCCceEEEECChHHcccccCCCCeeEEEECCC-C-----HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2466777777665 567788999998632 2 223789999999999999998773
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-11 Score=107.55 Aligned_cols=105 Identities=22% Similarity=0.210 Sum_probs=81.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeecc
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISR 272 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~ 272 (372)
.+.+.+...++ .+|||+|||+|.++..+++. ...++++|+++.+++.|+++ ++ .+.+...|..
T Consensus 82 ~~~~~~~~~~~--------~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 150 (248)
T 2yvl_A 82 YIALKLNLNKE--------KRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK 150 (248)
T ss_dssp HHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT
T ss_pred HHHHhcCCCCC--------CEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh
Confidence 45555555454 78999999999999999987 35789999999999998875 43 4566666665
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...+++++||+|++.. +++..++.++.++|+|||.+++..+.
T Consensus 151 ~~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 151 DAEVPEGIFHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp TSCCCTTCBSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred hcccCCCcccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5433677899999842 34446899999999999999999874
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-11 Score=107.49 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=74.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc-----eeEEEEeeCCHHHHHHHHHc----C------CCeEEEEeeccCCCCCC-CCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM-----AVCVAVYEATGSQVQLALER----G------LPAMIGNFISRQLPYPS-LSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~-----~~~v~gvD~s~~~v~~A~~r----g------l~~~~~~~d~~~lp~~~-~sF 281 (372)
.+|||||||+|.++..+++.... ...++++|+++.+++.|+++ + .++.+...|... ++++ ++|
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~f 164 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPY 164 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSE
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCc
Confidence 78999999999999999875211 13699999999999988765 2 245666666655 5555 789
Q ss_pred cEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 282 DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 282 DlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+|++...+.+. +.++.++|||||.+++....
T Consensus 165 D~I~~~~~~~~~-------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 165 NAIHVGAAAPDT-------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEECSCBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred cEEEECCchHHH-------HHHHHHHhcCCCEEEEEEec
Confidence 999998775554 36889999999999999865
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-11 Score=108.00 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=77.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCC-CCC--CCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL-PYP--SLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~l-p~~--~~sFDlV~~~~ 288 (372)
.+|||||||+|.++..+++... ...++++|+++.+++.|+++ ++ .+.+...+.... +.. +++||+|++..
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 7899999999999999998742 46799999999999998876 54 366666665543 332 57899999875
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. .+...++.++.++|+|||.+++.+.
T Consensus 135 ~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 135 AK----GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GG----SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CH----HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 42 3556799999999999999999854
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-11 Score=106.14 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=75.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccC-CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~-lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|..+..+++.......++++|+++.+++.|+++ ++ .+.+...+... ++..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~- 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD- 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT-
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC-
Confidence 6899999999999999998643246799999999999988865 43 25566666544 354456 999998732
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+...++.++.++|+|||++++.+.
T Consensus 136 ---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 136 ---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 24556799999999999999998754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-11 Score=107.93 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=76.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC-C-CC----CCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL-P-YP----SLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l-p-~~----~~sFDlV~ 285 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ ++. +.+...++... + +. .++||+|+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~ 145 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIY 145 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence 6899999999999999998733246799999999999988765 443 56666655332 2 11 17899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+... ..+...++.++.++|+|||++++.+...
T Consensus 146 ~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 146 IDAD----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp ECSC----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ECCC----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 7532 3455679999999999999999987643
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.7e-11 Score=105.95 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=76.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCC-C-CC---CCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL-P-YP---SLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~l-p-~~---~~sFDlV~~ 286 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ ++ .+.+...|+... + ++ .++||+|++
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~ 139 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI 139 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence 7899999999999999998743346799999999999988765 54 256666665432 1 11 267999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
... ......++.++.++|+|||++++.+...
T Consensus 140 d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 140 DAD----KQNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred cCC----cHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 743 2344568999999999999999876643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=110.60 Aligned_cols=125 Identities=14% Similarity=-0.003 Sum_probs=86.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCCCC----CCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLPY----PSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~lp~----~~~sFDlV~~ 286 (372)
.+|||+|||+|.++..++..+. .|+++|+|+.+++.|+++ ++. +.+...|+..+.. .+++||+|++
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 6899999999999999998753 689999999999988865 543 5666666554321 1568999999
Q ss_pred cccc---------ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 287 AQCG---------IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 287 ~~~~---------~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
+--. .++..+...++.++.++|+|||++++........ ......+.+...++..++++.
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~------~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA------SFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS------CHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCC------CHHHHHHHHHHHHHHcCCeEE
Confidence 5221 1222445578999999999999988877654321 112223334444456666554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-10 Score=105.10 Aligned_cols=124 Identities=19% Similarity=0.135 Sum_probs=89.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..+++... ...++++|+++.+++.|+++ ++ ++.+...|+...+. .++||+|++....
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH-- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS--
T ss_pred CEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc--
Confidence 7899999999999999998743 35799999999999988764 44 45677777777644 6789999997542
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
....++.++.++|+|||.++++....... ......+.++.+.+..++++...+
T Consensus 197 ---~~~~~l~~~~~~LkpgG~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 249 (272)
T 3a27_A 197 ---KTHKFLDKTFEFLKDRGVIHYHETVAEKI------MYERPIERLKFYAEKNGYKLIDYE 249 (272)
T ss_dssp ---SGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTHHHHHHHHHHHHTTEEEEEEE
T ss_pred ---cHHHHHHHHHHHcCCCCEEEEEEcCcccc------ccccHHHHHHHHHHHhCCeeEEeE
Confidence 33458899999999999999988754321 111223344555555566554333
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=105.28 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=101.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----CCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-----l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+|+|||||+|.++..++++.+. ..++..|. +.+++.|+++- -.+.+...|....|.+ .+|+|++..+++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh 255 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPG-CKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLH 255 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSS-CEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGG
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeecc
Confidence 378999999999999999998654 56777886 78898888752 1366776776655554 479999999999
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhh-------------HHHHHHHHHHHhcCeeEEeee---
Q 017377 292 IWDKKE-GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNK-------------SLLKVMEEFTEKICWSLIAQQ--- 354 (372)
Q Consensus 292 ~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~-------------~~w~~i~~l~~~lcw~~~~~~--- 354 (372)
+|.++. ..+|+++++.|+|||.++|.+...+.....+..... -..++++++.++.+|+.+...
T Consensus 256 ~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~ 335 (353)
T 4a6d_A 256 DWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTG 335 (353)
T ss_dssp GSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCS
T ss_pred cCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcC
Confidence 996443 468999999999999999998765432211111000 012345667788899877542
Q ss_pred --cceEEEEecCCC
Q 017377 355 --DETFIWQKTVDA 366 (372)
Q Consensus 355 --~~~~iw~K~~~~ 366 (372)
...++-+|.+++
T Consensus 336 ~~~~~i~ArKgt~~ 349 (353)
T 4a6d_A 336 AIYDAILARKGTHH 349 (353)
T ss_dssp SSCEEEEEECCCC-
T ss_pred CceEEEEEEecCcc
Confidence 234566666643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-11 Score=110.88 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=74.8
Q ss_pred CCCeEEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-----CeEEEEeeccCCC----CC--CCCcc
Q 017377 216 GVQSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-----PAMIGNFISRQLP----YP--SLSFD 282 (372)
Q Consensus 216 ~~~~VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-----~~~~~~~d~~~lp----~~--~~sFD 282 (372)
+++.|||||||+ +..+..++.+......|+++|+|+.|++.|+++-. .+.+...|..+++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457999999997 33344444432234679999999999999887621 2567777776642 11 34566
Q ss_pred -----EEEecccccccccc--HHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 283 -----MVHCAQCGIIWDKK--EGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 283 -----lV~~~~~~~~~~~~--~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.|+++.++++..+. +..++.++.+.|+|||+|+++.....
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 57777665555432 46799999999999999999976543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=118.25 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=76.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.+ ...|+++|+|+ +++.|+++ ++ .+.+...+..+++++ ++||+|+++...+
T Consensus 160 ~~VLDiGcGtG~la~~la~~~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY 235 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTT--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHH
T ss_pred CEEEEecCcccHHHHHHHHcC--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchH
Confidence 789999999999999998864 35799999998 88877654 55 367777788777765 5899999987666
Q ss_pred ccc-ccHHHHHHHHHhcccCCeEEEEE
Q 017377 292 IWD-KKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 292 ~~~-~~~~~~L~el~rvLkPGG~lvis 317 (372)
++. ++....+.++.++|+|||++++.
T Consensus 236 ~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 236 MLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 664 33345777899999999999853
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=123.86 Aligned_cols=101 Identities=14% Similarity=0.012 Sum_probs=80.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C-CCeEEEEeeccCC--CCCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G-LPAMIGNFISRQL--PYPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g-l~~~~~~~d~~~l--p~~~~sFDlV~~~~~ 289 (372)
+.+|||||||.|.++..|+.+| ..|+|+|.++.+|+.|+.+ + +++.+.+.+++++ ++++++||+|+|..+
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 3689999999999999999987 4699999999999988754 4 5677888887776 567889999999999
Q ss_pred cccccccHH--HHHHHHHhcccCCeEEEEEeCCC
Q 017377 290 GIIWDKKEG--IFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~~~~~--~~L~el~rvLkPGG~lvis~p~~ 321 (372)
++|+. ++. ..+..+.+.|+++|..++.....
T Consensus 144 ~ehv~-~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIV-HLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHH-HHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCC-CHHHHHHHHHHHHHhccccceeeEEecc
Confidence 88884 443 33556777888888777765543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-10 Score=112.33 Aligned_cols=117 Identities=18% Similarity=0.130 Sum_probs=86.0
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~ 273 (372)
.+...+...++ .+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+...|...
T Consensus 250 l~~~~l~~~~g--------~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~ 321 (450)
T 2yxl_A 250 VASIVLDPKPG--------ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK 321 (450)
T ss_dssp HHHHHHCCCTT--------CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC
T ss_pred HHHHhcCCCCc--------CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhh
Confidence 34455555554 7899999999999999998633335799999999999888765 66 46677777777
Q ss_pred CC--CCCCCccEEEec-----cccccccccH----------------HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 274 LP--YPSLSFDMVHCA-----QCGIIWDKKE----------------GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 274 lp--~~~~sFDlV~~~-----~~~~~~~~~~----------------~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++ +++++||+|++. .+.++..++. ..+|.++.++|||||.+++++.....
T Consensus 322 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 322 APEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp CSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred cchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 66 566889999962 2222211221 46899999999999999999886543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=107.62 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=80.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCC----CCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPY----PSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~----~~~sFDlV~~~~ 288 (372)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ ++ ++.+...|...++. ++++||+|++.-
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 7899999999999999998532335799999999999888765 55 46677677666553 367899999862
Q ss_pred ccc-----c------------ccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGI-----I------------WDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~-----~------------~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
... + .......+|.++.++|||||.+++++.....
T Consensus 165 Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~ 216 (274)
T 3ajd_A 165 PCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV 216 (274)
T ss_dssp CCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence 111 0 1134467899999999999999999876544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=106.24 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=81.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEE-eeccCC---CCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN-FISRQL---PYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~-~d~~~l---p~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..|++.+. ..++|+|+|+.|++.|+++...+.... .+...+ .++...||.+.+..++.++
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l 116 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL 116 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred CEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence 6899999999999999998853 369999999999999887654433221 111111 1111123444433332222
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCC-CC-------CCCC-CcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPES-KP-------RGSS-SSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~-~~-------~~~~-~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
..+|.++.|+|||||.+++...+. .. .... ....+....+.+.++++..+|+.....
T Consensus 117 ----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 117 ----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp ----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred ----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 458999999999999999974110 00 0000 011223345667777888899877653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-11 Score=111.86 Aligned_cols=95 Identities=19% Similarity=0.072 Sum_probs=68.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-------CeEEE--EeeccCCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-------PAMIG--NFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-------~~~~~--~~d~~~lp~~~~sFDlV~~~~ 288 (372)
.+|||||||+|.++..+++. ..|+|+|+++ |+..+.++.. ++.+. ..|+..++ +++||+|+|..
T Consensus 76 ~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~ 148 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDV 148 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeC
Confidence 78999999999999999887 3488999998 5333322222 35555 66777665 78999999975
Q ss_pred cccccc---cc-HH--HHHHHHHhcccCCe--EEEEEeCC
Q 017377 289 CGIIWD---KK-EG--IFLIEADRLLKPGG--YFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~---~~-~~--~~L~el~rvLkPGG--~lvis~p~ 320 (372)
+ .+.. .+ .. .+|.++.++|+||| .|++....
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 5 2211 11 11 37899999999999 99998765
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=114.17 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=69.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-------CeEEE--EeeccCCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-------PAMIG--NFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-------~~~~~--~~d~~~lp~~~~sFDlV~~~~ 288 (372)
.+|||+|||+|.++..++++ ..|+|+|+++ |+..+.++.. ++.+. ..|+..+| +++||+|+|..
T Consensus 84 ~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~ 156 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI 156 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence 68999999999999999987 3488999998 5443433322 35566 66777765 78999999985
Q ss_pred cccccc----ccHH--HHHHHHHhcccCCe--EEEEEeCC
Q 017377 289 CGIIWD----KKEG--IFLIEADRLLKPGG--YFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~----~~~~--~~L~el~rvLkPGG--~lvis~p~ 320 (372)
+ .+.. +... .+|.++.++||||| .|++....
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 5 2211 1111 37899999999999 99997765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-11 Score=109.45 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=76.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCC-CCC-----CCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL-PYP-----SLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~l-p~~-----~~sFDlV~ 285 (372)
.+|||||||+|..+..+++.......|+++|+++.+++.|+++ ++ .+.+...|+... +.. +++||+|+
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~ 141 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF 141 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence 7899999999999999998643346799999999998766554 55 366766666443 221 47899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+... ..+...++.++.++|+|||++++.+...
T Consensus 142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 142 IDAD----KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp EESC----GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred EcCC----hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 8643 3445568999999999999999976543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=105.08 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=75.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC--------------C
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP--------------Y 276 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp--------------~ 276 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ ++. +.+...+... ++ |
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f 141 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDF 141 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccc
Confidence 7899999999999999998743346799999999999988876 443 5555555432 11 3
Q ss_pred CC--CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 277 PS--LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 277 ~~--~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++ ++||+|++... ..+...++.++.++|+|||++++...
T Consensus 142 ~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 142 AFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp CCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 33 78999998743 23445689999999999999999764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-09 Score=96.03 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=69.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~- 296 (372)
.+|||+|||+|.++..++..+ ...++++|+++.+++.|+++..++.+...|...+| ++||+|+++..++++...
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------
T ss_pred CEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCch
Confidence 789999999999999999874 24689999999999999987546677777777764 789999999776665432
Q ss_pred HHHHHHHHHhcccCCeEEEEE
Q 017377 297 EGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis 317 (372)
...++.++.+++ |+.+++.
T Consensus 128 ~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 128 DRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp CHHHHHHHHHHE--EEEEEEE
T ss_pred hHHHHHHHHHhc--CcEEEEE
Confidence 235889999998 5543333
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-10 Score=108.84 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccCC--CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQL--PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~l--p~~~~sFDlV 284 (372)
.+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++- ..+.+...|.... .+++++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 34799999999999999999863 3467999999999999998752 2466666665442 2346789999
Q ss_pred Eecccccccc--cc--HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWD--KK--EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~--~~--~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .++. .. ...++.++.++|+|||.+++...
T Consensus 199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99643 2221 11 24699999999999999999744
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=112.18 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||||||+|.++..++++... ..++++|+ +.+++.|++. ..+.+...|... +++ +||+|++..++++|. +
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~-d 266 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN-D 266 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC-H
T ss_pred CCEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC-H
Confidence 378999999999999999988543 56889999 7888777642 236666667666 666 499999999988884 4
Q ss_pred HH--HHHHHHHhcccC---CeEEEEEeCCCC
Q 017377 297 EG--IFLIEADRLLKP---GGYFVLTSPESK 322 (372)
Q Consensus 297 ~~--~~L~el~rvLkP---GG~lvis~p~~~ 322 (372)
.. .+|+++.++|+| ||++++.++...
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 44 799999999999 999999886543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=103.43 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=75.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeecc----CCCCCC--CCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISR----QLPYPS--LSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~----~lp~~~--~sFDlV~ 285 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ ++. +.+...++. .++..+ ++||+|+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~ 153 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF 153 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence 6899999999999999998643346799999999999988765 442 555555532 233334 7899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+... ..+...++.++.++|+|||++++....
T Consensus 154 ~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 154 IDAD----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp ECSC----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred ECCC----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 8643 245567899999999999999997654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=106.23 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=75.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccC-CCC------CCCCccEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LPY------PSLSFDMV 284 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~-lp~------~~~sFDlV 284 (372)
.+|||||||+|..+..+++.......++++|+++.+++.|+++ ++ .+.+...++.. ++. ++++||+|
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V 160 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI 160 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEE
Confidence 7899999999999999998743346799999999999988864 54 35566555543 231 25789999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... ..+...++.++.++|||||++++...
T Consensus 161 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 161 FVDAD----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EECSC----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEcCc----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 98643 24456789999999999999998753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=108.58 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=75.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----CCeEEEEeeccCC--CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----LPAMIGNFISRQL--PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-----l~~~~~~~d~~~l--p~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..+++.... ..++++|+++.+++.|+++- ..+.+...|.... .+++++||+|++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~-~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~- 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQ-SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF- 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTT-CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-
T ss_pred CEEEEEECCcCHHHHHHHHHCCC-cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-
Confidence 48999999999999999985322 47899999999999999862 2356666665443 345789999999632
Q ss_pred cccc-c---cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWD-K---KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~-~---~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.++. . ....++.++.++|+|||.+++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2221 1 114689999999999999998875
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-10 Score=104.81 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=76.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~~ 286 (372)
+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++- ..+.+...|... ++..+++||+|++
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4799999999999999998763 3467999999999999998762 235566666543 2223678999999
Q ss_pred ccccccccccH----HHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKE----GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~----~~~L~el~rvLkPGG~lvis~p~ 320 (372)
... .++.... ..++.++.++|+|||.+++....
T Consensus 158 d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 158 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp ECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 633 3332211 46999999999999999998654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=113.31 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=84.7
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQL 274 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~l 274 (372)
.+...+...++ .+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+.+.+...|+..+
T Consensus 92 l~a~~L~~~~g--------~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l 163 (464)
T 3m6w_A 92 AVGVLLDPKPG--------ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRAL 163 (464)
T ss_dssp HHHHHHCCCTT--------CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHH
T ss_pred HHHHhcCcCCC--------CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHh
Confidence 34455555555 7999999999999999998743335799999999999888765 66666666676665
Q ss_pred C-CCCCCccEEEec----c-ccc--------cccc--------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 275 P-YPSLSFDMVHCA----Q-CGI--------IWDK--------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 275 p-~~~~sFDlV~~~----~-~~~--------~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+ +.+++||+|++. . ..+ .|.. ....+|.++.++|||||++++++.....
T Consensus 164 ~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~ 234 (464)
T 3m6w_A 164 AEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP 234 (464)
T ss_dssp HHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred hhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence 5 346889999952 1 111 1111 1146899999999999999999876544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=106.25 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
+.+.+.+.+.+....+ .+|||+|||+|.++..++.. ....++++|+|+.+++.|+++ ++. +.+.
T Consensus 109 e~lv~~~l~~~~~~~~--------~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~ 178 (284)
T 1nv8_A 109 EELVELALELIRKYGI--------KTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 178 (284)
T ss_dssp HHHHHHHHHHHHHHTC--------CEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHhcccCC--------CEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence 3455555555542222 68999999999999999987 346799999999999998865 553 6677
Q ss_pred EeeccCCCCCCCCc---cEEEeccccc-----------ccc-------ccHHHHHHHHH-hcccCCeEEEEEeC
Q 017377 268 NFISRQLPYPSLSF---DMVHCAQCGI-----------IWD-------KKEGIFLIEAD-RLLKPGGYFVLTSP 319 (372)
Q Consensus 268 ~~d~~~lp~~~~sF---DlV~~~~~~~-----------~~~-------~~~~~~L~el~-rvLkPGG~lvis~p 319 (372)
..|... +++ ++| |+|+++--.+ |.+ .+...+++++. +.|+|||.+++...
T Consensus 179 ~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 179 KGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp ESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 666554 233 579 9999972111 110 11125899999 99999999999754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=105.74 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=87.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC-CCC-CCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LPY-PSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~-lp~-~~~sFDlV~~~~~~ 290 (372)
.+|||+| |+|.++..++..+. ...++++|+++.+++.|+++ |+ ++.+...|+.. +|. .+++||+|+++..+
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 7899999 99999999988753 24689999999999988876 66 56777778777 664 45789999998543
Q ss_pred ccccccHHHHHHHHHhcccCCeE-EEEEeCCCCCCCCCCcchhhHHHHHHHHHHH-hcCeeEE
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGY-FVLTSPESKPRGSSSSRKNKSLLKVMEEFTE-KICWSLI 351 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~-lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~-~lcw~~~ 351 (372)
... ....++.++.++|+|||. ++++.... . .....|..+..+.. ..++...
T Consensus 252 ~~~--~~~~~l~~~~~~LkpgG~~~~~~~~~~-~-------~~~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 252 TLE--AIRAFVGRGIATLKGPRCAGYFGITRR-E-------SSLDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp SHH--HHHHHHHHHHHTBCSTTCEEEEEECTT-T-------CCHHHHHHHHHHHHHTSCCEEE
T ss_pred chH--HHHHHHHHHHHHcccCCeEEEEEEecC-c-------CCHHHHHHHHHHHHHhcCcchh
Confidence 222 246789999999999994 45554431 1 12234555666655 6666553
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-10 Score=108.53 Aligned_cols=118 Identities=20% Similarity=0.069 Sum_probs=85.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++..+. ...++|+|+++.+++.|+++ |+ .+.+...|+..+++++++||+|+++-...
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred CEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence 7899999999999999998753 23589999999999988875 55 57788889999998889999999973321
Q ss_pred ccc------cc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWD------KK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~------~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
... .+ ...++.++.++| ||.+++..+. ...++.+.+..+|+...+
T Consensus 298 ~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~---------------~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 298 LKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE---------------KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp ------CCHHHHHHHHHHHHHHHE--EEEEEEEESC---------------HHHHHHHHHHTTEEEEEE
T ss_pred cccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC---------------HHHHHHHHHHcCCEEEEE
Confidence 110 11 245788999999 5555555442 123445567788887643
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=110.40 Aligned_cols=94 Identities=24% Similarity=0.279 Sum_probs=72.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCC--eEEEEeeccCCCCCCCCccEEEeccc--
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLP--AMIGNFISRQLPYPSLSFDMVHCAQC-- 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~--~~~~~~d~~~lp~~~~sFDlV~~~~~-- 289 (372)
++|||||||+|.++..+++.|. ..|+++|.|+ +++.|++ +++. +.+...+++.+.+| +.||+|+|...
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 7899999999999988888764 4689999996 6666654 4653 66777788888877 67999999522
Q ss_pred cccccccHHHHHHHHHhcccCCeEEE
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lv 315 (372)
..........++....|+|+|||.++
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred cccccchhhhHHHHHHhhCCCCceEC
Confidence 12222355678889999999999987
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.8e-10 Score=105.94 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=76.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~~ 286 (372)
+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++- ..+.+...|... ++..+++||+|++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 3789999999999999998763 3467999999999999998762 135566665443 2234678999998
Q ss_pred ccccccccc--c--HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDK--K--EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~--~--~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
... .++.. . ...++.++.++|+|||.+++....
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 642 23321 1 156899999999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=102.56 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=75.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCC-C-CC----CCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL-P-YP----SLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~l-p-~~----~~sFDlV~ 285 (372)
.+|||||||+|.++..+++.......++++|+++.+++.|+++ ++ .+.+...++... + ++ .++||+|+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~ 150 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 150 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence 7899999999999999998633346799999999999988865 44 356665554322 1 11 16899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+... ..+...++.++.++|+|||.+++....
T Consensus 151 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 151 VDAD----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp ECSC----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred ECCC----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 8643 244456899999999999999997643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=106.96 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=75.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEEeeccC-CCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQ-LPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------gl~~~~~~~d~~~-lp~~~~sFDlV~~ 286 (372)
+.+|||||||+|.++..++++. ....++++|+++.+++.|+++ ...+.+...|+.. ++..+++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 4799999999999999999874 346799999999999999875 2235666666543 3445688999999
Q ss_pred cccccccccc----HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
... .++.+. ...++.++.++|+|||.+++....
T Consensus 175 d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 175 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 633 333211 235899999999999999998643
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=100.66 Aligned_cols=97 Identities=19% Similarity=0.084 Sum_probs=68.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCce--------eEEEEeeCCHHHHHHHHHcCCCeEEE-EeeccCCC--------CCCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMA--------VCVAVYEATGSQVQLALERGLPAMIG-NFISRQLP--------YPSLS 280 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~--------~~v~gvD~s~~~v~~A~~rgl~~~~~-~~d~~~lp--------~~~~s 280 (372)
.+|||||||+|.++..+++..... ..++++|+++.+ ....+.+. ..|....+ +++++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 789999999999999999873221 579999999842 01134455 45544332 34568
Q ss_pred ccEEEeccccc---cccccH-------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 281 FDMVHCAQCGI---IWDKKE-------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 281 FDlV~~~~~~~---~~~~~~-------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
||+|+|..+.. ++..+. ..++.++.++|||||.+++.+..
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 99999964322 222222 36899999999999999998763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=104.61 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------C---CeEEEEeeccC-CCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------L---PAMIGNFISRQ-LPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------l---~~~~~~~d~~~-lp~~~~sFDlV~~ 286 (372)
+.+|||||||+|.++..++++. ....++++|+++.+++.|+++- . .+.+...|+.. ++..+++||+|++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4799999999999999998762 2367999999999999998752 2 35666666543 3334688999999
Q ss_pred cccccccccc----HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
... .++... ...++.++.++|+|||.+++....
T Consensus 155 d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 643 333221 245899999999999999998643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-10 Score=105.27 Aligned_cols=102 Identities=17% Similarity=0.064 Sum_probs=74.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~~ 286 (372)
+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++- ..+.+...|+.. ++..+++||+|++
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 3789999999999999999873 2367999999999999988752 245666666543 3444678999998
Q ss_pred cccccc-ccc----cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGII-WDK----KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~-~~~----~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
... .+ ... ....++.++.++|+|||.+++....
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 632 23 111 1246899999999999999998643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=89.69 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=82.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++.+.+...|...++ ++||+|+++......
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence 7899999999999999998753 3689999999999999876 346677777777764 489999998664444
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
. .....++.++.++| ||.+++..++ ....+.+..+.+..++++..
T Consensus 126 ~~~~~~~~l~~~~~~l--~~~~~~~~~~------------~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS--DVVYSIHLAK------------PEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp STTTTHHHHHHHHHHC--SEEEEEEECC------------HHHHHHHHHHHHHTTEEEEE
T ss_pred cCCchHHHHHHHHHhc--CcEEEEEeCC------------cCCHHHHHHHHHHCCCeEEE
Confidence 3 22345888999998 6654443221 12233445556777776654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-09 Score=98.04 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=90.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++..+. ...++++|+++.+++.|+++ ++. +.+...|......++..||+|+..+..-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg 101 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGG 101 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCch
Confidence 6899999999999999998864 45799999999999998875 553 6666666655555545799988654311
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
+-...+|.+..+.|+++|+|+++.... ...+..+....+|.+....
T Consensus 102 ---~lI~~IL~~~~~~l~~~~~lIlqp~~~--------------~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 102 ---RLIADILNNDIDKLQHVKTLVLQPNNR--------------EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp ---HHHHHHHHHTGGGGTTCCEEEEEESSC--------------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhCcCCEEEEECCCC--------------hHHHHHHHHHCCCEEEEEE
Confidence 223458889999999999999986411 3456777788899988654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.1e-10 Score=109.86 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=86.7
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccC
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQ 273 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~ 273 (372)
..+...+...++ .+|||+|||+|..+..+++.... ..++++|+++.+++.++++ ++++.+...|...
T Consensus 236 ~~~~~~l~~~~g--------~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~ 306 (429)
T 1sqg_A 236 QGCMTWLAPQNG--------EHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY 306 (429)
T ss_dssp HTHHHHHCCCTT--------CEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC
T ss_pred HHHHHHcCCCCc--------CeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhh
Confidence 344555555554 78999999999999999987533 6799999999999887765 6677777777776
Q ss_pred CC--CCCCCccEEEec----c-ccccccccH----------------HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 274 LP--YPSLSFDMVHCA----Q-CGIIWDKKE----------------GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 274 lp--~~~~sFDlV~~~----~-~~~~~~~~~----------------~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++ +++++||+|++. . ..++..++. ..+|.++.++|||||++++++.....
T Consensus 307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~ 379 (429)
T 1sqg_A 307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 379 (429)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 65 566899999962 1 111111221 36899999999999999999875543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-10 Score=106.48 Aligned_cols=101 Identities=15% Similarity=0.025 Sum_probs=73.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~~ 286 (372)
+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++- ..+.+...|+.. ++..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 3789999999999999998763 3467999999999999998762 135566555543 2335688999998
Q ss_pred ccccccccccH----HHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKE----GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~----~~~L~el~rvLkPGG~lvis~p 319 (372)
... .++.+.. ..++.++.++|+|||.+++...
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 643 3332221 4689999999999999999863
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=108.11 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++- ..+.+...|+.. ++..+++||+|+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4799999999999999998863 3467999999999999998652 235666666554 344568899999
Q ss_pred eccccccc---cc--c--HHHHHHHHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIW---DK--K--EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~---~~--~--~~~~L~el~rvLkPGG~lvis~p 319 (372)
+... .++ .+ . ...++.++.++|+|||.+++...
T Consensus 157 ~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9744 444 21 1 24689999999999999999754
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=107.11 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=88.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEEeeccC-CCC---CCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQ-LPY---PSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl---~~~~~~~d~~~-lp~---~~~sFDlV~~ 286 (372)
.+|||+|||+|.++..++..+. ..|+++|+|+.+++.|+++ ++ ++.+...|+.. ++. ..++||+|++
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 7899999999999999998652 3689999999999988765 55 46677766544 221 2458999998
Q ss_pred ccccc--------cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 287 AQCGI--------IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 287 ~~~~~--------~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
.--.. ........++.++.++|+|||+++++...... .....++.+...+...+++.+
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-------~~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-------TVSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-------CHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-------CHHHHHHHHHHHHHHcCCcEE
Confidence 53221 11122345778889999999999999865433 233445666666677777733
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.2e-10 Score=102.82 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccCCCCCCCCccEEEec
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
+.+|||||||+|.++..++++ . ..++++|+++.+++.|+++- ..+.+...|..... ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 479999999999999999887 3 67999999999999887642 23556655665543 789999986
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. .++..++.++.++|+|||.+++....
T Consensus 147 ~------~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 147 Q------EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp S------CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred C------CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 2 23334899999999999999997543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.8e-10 Score=101.40 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=75.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC-C-C-----CCCCccEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL-P-Y-----PSLSFDMV 284 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l-p-~-----~~~sFDlV 284 (372)
.+|||||||+|..+..+++.......++++|+++.+++.|+++ ++. +.+...++... + + ++++||+|
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I 151 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFG 151 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEE
Confidence 7899999999999999998743346799999999999988764 553 55665554432 2 1 25789999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++.. +..+...++.++.++|+|||++++...
T Consensus 152 ~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 152 FVDA----DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EECS----CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EECC----chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9863 234556789999999999999998754
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-09 Score=98.26 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=87.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++..+. ...++++|+++.+++.|+++ ++. +.+...|......++..||+|++.+..-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg 101 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG 101 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCch
Confidence 6899999999999999998863 45799999999999999876 653 5666666555444444699998753311
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+-...+|.+..+.|+++|+|+++... ....+..+....+|.+...
T Consensus 102 ---~lI~~IL~~~~~~L~~~~~lIlq~~~--------------~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 102 ---TLIRTILEEGAAKLAGVTKLILQPNI--------------AAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp ---HHHHHHHHHTGGGGTTCCEEEEEESS--------------CHHHHHHHHHHHTEEEEEE
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEEEcCC--------------ChHHHHHHHHHCCCEEEEE
Confidence 22345889999999999999998541 1345677778889987543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=106.12 Aligned_cols=122 Identities=18% Similarity=0.103 Sum_probs=83.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCC-CCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQL-PYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~l-p~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..++..+. .|+++|+|+.+++.|+++ ++...+...|+... +...+.||+|++.--.+.
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred CeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence 7899999999999999998753 289999999999988765 66655556665443 221344999998633211
Q ss_pred c--------cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCee
Q 017377 293 W--------DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWS 349 (372)
Q Consensus 293 ~--------~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~ 349 (372)
. ..+...++..+.++|+|||++++.+..... +.....+.+...+...+.+
T Consensus 293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~-------~~~~f~~~v~~a~~~~g~~ 350 (393)
T 4dmg_A 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL-------RLEDLLEVARRAAADLGRR 350 (393)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-------CHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC-------CHHHHHHHHHHHHHHhCCe
Confidence 1 123346888999999999999988765433 2223334445555544443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-09 Score=104.83 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=78.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEEeeccCCCC----CCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQLPY----PSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl---~~~~~~~d~~~lp~----~~~sFDlV~~ 286 (372)
.+|||+|||+|.++..++..+ ...++++|+++.+++.|+++ ++ ++.+...|+..... .+++||+|++
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 789999999999999999875 24699999999999988765 66 46677766654321 1468999999
Q ss_pred cccc--------ccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 287 AQCG--------IIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 287 ~~~~--------~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.--. .........++.++.++|+|||+++++.....
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 6321 11113445789999999999999999886543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-09 Score=108.82 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=79.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCC-CCCCccEEEec----
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPY-PSLSFDMVHCA---- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~-~~~sFDlV~~~---- 287 (372)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+ ++.+...|+..++. .+++||.|++.
T Consensus 119 ~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcS 198 (479)
T 2frx_A 119 QRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCS 198 (479)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCC
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCcC
Confidence 7899999999999999998633335799999999999888765 65 46667777766653 46789999972
Q ss_pred c-ccc--------cccc--------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 Q-CGI--------IWDK--------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~-~~~--------~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. ..+ +|.. ....+|.++.++|||||++++++.....
T Consensus 199 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~ 251 (479)
T 2frx_A 199 GEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ 251 (479)
T ss_dssp CGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred CcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence 1 111 1211 1235899999999999999999876554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-10 Score=103.79 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=65.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC---CCC---CCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL---PYP---SLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l---p~~---~~sFDlV 284 (372)
..+|||+|||+|.++..++.+. ....++++|+++.+++.|+++ ++. +.+...|+... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 3689999999999999888762 235799999999999988865 443 66776665542 454 3689999
Q ss_pred Eecccccccc--------------ccHHHHHHHHHhcccCCeEEEEE
Q 017377 285 HCAQCGIIWD--------------KKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 285 ~~~~~~~~~~--------------~~~~~~L~el~rvLkPGG~lvis 317 (372)
+|+-..++.. .....++.++.++|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9984433221 01113456677777777766543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=101.96 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~ 267 (372)
....+.+.+.+...++ .+|||||||+|.++..|++.+ ..++++|+++.+++.++++ +. ++.+.
T Consensus 14 ~~i~~~i~~~~~~~~~--------~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 82 (285)
T 1zq9_A 14 PLIINSIIDKAALRPT--------DVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVL 82 (285)
T ss_dssp HHHHHHHHHHTCCCTT--------CEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 4566777777766554 789999999999999999885 3689999999999998876 22 46677
Q ss_pred EeeccCCCCCCCCccEEEeccccccccccHH-HHH--------------HHH--HhcccCCeEEE
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDKKEG-IFL--------------IEA--DRLLKPGGYFV 315 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~-~~L--------------~el--~rvLkPGG~lv 315 (372)
..|+..++++ +||+|+++.. +++..+.. .+| +|+ +++|+|||.++
T Consensus 83 ~~D~~~~~~~--~fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 83 VGDVLKTDLP--FFDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp ESCTTTSCCC--CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred Ecceecccch--hhcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7787777765 7999999743 55533221 222 233 36999999653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=101.17 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=73.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------------CCeEEEEeeccC-CCCCCCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------------LPAMIGNFISRQ-LPYPSLS 280 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------------l~~~~~~~d~~~-lp~~~~s 280 (372)
+.+|||||||+|.++..+++. ....++++|+++.+++.|+++- ..+.+...|+.. ++. +++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 378999999999999999987 3467999999999999998752 124555555433 222 578
Q ss_pred ccEEEecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 281 FDMVHCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 281 FDlV~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
||+|++... .++... ...++.++.++|+|||.+++...
T Consensus 153 fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 999999743 333221 14589999999999999999754
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-10 Score=108.92 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=66.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeC----CHHHHHHHHHc--CCC-eEEEEe-eccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEA----TGSQVQLALER--GLP-AMIGNF-ISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~----s~~~v~~A~~r--gl~-~~~~~~-d~~~lp~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++++ .|+++|+ ++.+++.+... +.+ +.+... |...+ +.++||+|+|..+
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~~ 157 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIG 157 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCC
T ss_pred CEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccC--CcCCCCEEEECCc
Confidence 689999999999999999872 4788898 45433221111 112 455555 55544 4678999999755
Q ss_pred cc--cccccHH---HHHHHHHhcccCCeEEEEEeCCC
Q 017377 290 GI--IWDKKEG---IFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 290 ~~--~~~~~~~---~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ++..+.. .+|.++.++|||||.|++..+..
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 32 2222222 47899999999999999976643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-09 Score=94.95 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=86.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCC-CccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSL-SFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~-sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..++..+. ...++++|+++.+++.|+++ ++. +.+...|... +++.+ .||+|+.++..
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG~G 94 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAGMG 94 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcCCC
Confidence 6899999999999999998864 46799999999999988865 553 5555555421 23333 69999876431
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
..-...+|.+....|+|+|+|+++.. .. ...+..+....+|.+....
T Consensus 95 ---g~~i~~Il~~~~~~L~~~~~lVlq~~-~~-------------~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 95 ---GRLIARILEEGLGKLANVERLILQPN-NR-------------EDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp ---HHHHHHHHHHTGGGCTTCCEEEEEES-SC-------------HHHHHHHHHHTTEEEEEEE
T ss_pred ---hHHHHHHHHHHHHHhCCCCEEEEECC-CC-------------HHHHHHHHHHCCCEEEEEE
Confidence 12234689999999999999999754 11 2456777788899888663
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=97.09 Aligned_cols=93 Identities=17% Similarity=0.077 Sum_probs=66.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC-----------CCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP-----------SLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~-----------~~sFDlV~~ 286 (372)
.+|||+|||+|.++..++++ ...|+|+|+++.. ....+.+...|+...+.. .++||+|+|
T Consensus 27 ~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence 79999999999999999987 3569999998742 112456666676665421 148999999
Q ss_pred ccccc---ccccc-------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGI---IWDKK-------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~---~~~~~-------~~~~L~el~rvLkPGG~lvis~p 319 (372)
..... ++..+ ...++.++.++|||||.|++...
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 63211 11111 23578899999999999998876
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=104.61 Aligned_cols=102 Identities=23% Similarity=0.163 Sum_probs=77.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCC----CCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPY----PSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~----~~~sFDlV~~~~ 288 (372)
.+|||+|||+|.++..++.. ...++++|+++.+++.|+++ ++. +.+...|+..... .+++||+|++.-
T Consensus 211 ~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 68999999999999999986 46799999999999988865 554 6666666554321 257899999953
Q ss_pred ccccc--------cccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 289 CGIIW--------DKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 289 ~~~~~--------~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
-.... ......++.++.++|+|||.++++.....
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22111 13334689999999999999999987543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=107.06 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=91.0
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~ 273 (372)
.+...+...++ .+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|...
T Consensus 96 l~~~~L~~~~g--------~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~ 167 (456)
T 3m4x_A 96 IVGTAAAAKPG--------EKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAE 167 (456)
T ss_dssp HHHHHHCCCTT--------CEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHH
T ss_pred HHHHHcCCCCC--------CEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 34455555555 7999999999999999987622335699999999999887765 654 5566666655
Q ss_pred CC-CCCCCccEEEeccc-----ccc--------ccc--------cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcch
Q 017377 274 LP-YPSLSFDMVHCAQC-----GII--------WDK--------KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRK 331 (372)
Q Consensus 274 lp-~~~~sFDlV~~~~~-----~~~--------~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e 331 (372)
++ +.+++||+|++.-- .+. |.. ....+|.++.++|||||++++++...... |
T Consensus 168 l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e------E 241 (456)
T 3m4x_A 168 LVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE------E 241 (456)
T ss_dssp HHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG------G
T ss_pred hhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc------c
Confidence 54 34578999997411 111 111 11257999999999999999998865441 2
Q ss_pred hhHHHHHHHHHHHhcCeeEE
Q 017377 332 NKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 332 ~~~~w~~i~~l~~~lcw~~~ 351 (372)
. -+.++.+.++..+++.
T Consensus 242 n---e~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 242 N---EEIISWLVENYPVTIE 258 (456)
T ss_dssp T---HHHHHHHHHHSSEEEE
T ss_pred C---HHHHHHHHHhCCCEEE
Confidence 2 2334555555555544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=104.86 Aligned_cols=104 Identities=20% Similarity=0.074 Sum_probs=78.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCC----CCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPY----PSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~----~~~sFDlV~~~ 287 (372)
.+|||+|||+|.++..++..+ ...++++|+++.+++.|+++ ++ ++.+...|+..... ++++||+|++.
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 789999999999999999874 24689999999999988765 55 46677666654321 25789999996
Q ss_pred cccccc--------cccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIW--------DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~--------~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
--.... ......++.++.++|+|||.+++++.....
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 340 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 340 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence 322111 133456889999999999999999875543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=99.35 Aligned_cols=97 Identities=10% Similarity=-0.044 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+.+|||||||+|.++..+. ....++++|+++.+++.++++ +.+..+...|....+.+ ++||+|++.-+++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh 179 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLP 179 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHH
T ss_pred CCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHH
Confidence 34799999999999999887 336799999999999988875 66677777777766655 5899999987766
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEE
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
+........+.++...|+++|.++-.
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEEc
Confidence 66322223444888899999765543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=101.74 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=78.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc----eeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM----AVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~----~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..+++.... ...++|+|+++.+++.|+.+ ++.+.+...|+.. +.+.+.||+|+++-.
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NPP 210 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLP 210 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECC
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECCC
Confidence 68999999999999988876321 26799999999999988864 6666777666544 335678999999855
Q ss_pred ccccccc----------------H-HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 290 GIIWDKK----------------E-GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~~~----------------~-~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.++..+ . ..++.++.+.|+|||++++..|+.
T Consensus 211 fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 211 VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 3333211 1 147999999999999999998754
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=100.37 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
....+.+.+.+....+ .+|||||||+|.++..|++.+ ..++++|+++.+++.|+++ +. ++.+..
T Consensus 28 ~~i~~~i~~~~~~~~~--------~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~ 96 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSS--------DIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNLEVYE 96 (299)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEC--
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 4566777777766555 789999999999999999874 4699999999999988865 33 456666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccH-HHHH---------------HHHHhcccCCe
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFL---------------IEADRLLKPGG 312 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L---------------~el~rvLkPGG 312 (372)
.|+..+++ .+||+|+++.. +++.... ..++ ..+.|+++|+|
T Consensus 97 ~D~~~~~~--~~~D~Vv~n~p-y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 97 GDAIKTVF--PKFDVCTANIP-YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp --CCSSCC--CCCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CchhhCCc--ccCCEEEEcCC-cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 67766665 48999999743 5553322 2333 34678899887
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-09 Score=97.30 Aligned_cols=100 Identities=11% Similarity=0.033 Sum_probs=76.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+.+|||||||+|.++..++... ....++++|+++.+++.++++ |++..+...|...- .+.+.||+|+++-.+.+
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~-~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED-RLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS-CCCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc-CCCCCcchHHHHHHHHH
Confidence 5799999999999999888764 347799999999999988765 77777776665433 46688999999987666
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
..+.....+-++...|+|+|.++-..
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEEE
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEecc
Confidence 63332223339999999999876543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9e-09 Score=108.77 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=79.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccC-CCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQ-LPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~-lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++..+. ..|+++|+|+.+++.|+++ ++. +.+...|+.. ++...++||+|++.--
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 6899999999999999998753 4689999999999988875 554 6677777654 3445688999999632
Q ss_pred c----------ccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 290 G----------IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 290 ~----------~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. .....+...++.++.++|+|||+++++......
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~ 662 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGF 662 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 1 122234456899999999999999998875433
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=95.76 Aligned_cols=92 Identities=13% Similarity=-0.034 Sum_probs=64.2
Q ss_pred CeEEEeCC------CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEE-EEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGC------GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMI-GNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGC------G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~-~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|| |+|+ ..+++.......|+|+|+++. + . .+.+ ...|+..++++ ++||+|+++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----~--~v~~~i~gD~~~~~~~-~~fD~Vvsn~~- 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----S--DADSTLIGDCATVHTA-NKWDLIISDMY- 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----C--SSSEEEESCGGGCCCS-SCEEEEEECCC-
T ss_pred CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----C--CCEEEEECccccCCcc-CcccEEEEcCC-
Confidence 78999999 5576 344444222367999999987 2 2 3445 66777777765 78999999732
Q ss_pred cccc-----------ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWD-----------KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~-----------~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.++. .....++.++.++|||||.|++..+..
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2210 112368999999999999999987643
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=94.22 Aligned_cols=133 Identities=12% Similarity=0.106 Sum_probs=91.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++..+. ..|+++|+++.+++.++++ ++. +.+.+.|+..++. .+.||.|+++.-
T Consensus 127 ~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-- 201 (278)
T 3k6r_A 127 ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-- 201 (278)
T ss_dssp CEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred CEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC--
Confidence 7899999999999999998853 4689999999999888765 553 5666777777653 578999998732
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
.....+|..+.++|+|||.+.+........ ......+.++.+++..+++........+-+-.|.
T Consensus 202 ---~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~------~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~ 265 (278)
T 3k6r_A 202 ---VRTHEFIPKALSIAKDGAIIHYHNTVPEKL------MPREPFETFKRITKEYGYDVEKLNELKIKRYAPG 265 (278)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTT
T ss_pred ---CcHHHHHHHHHHHcCCCCEEEEEeeecccc------cchhHHHHHHHHHHHcCCcEEEEEEEEEEeECcC
Confidence 112247788889999999998765422110 0112234566677788887654443333344443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=91.38 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+....+ .+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+...|
T Consensus 16 ~~~~~~i~~~~~~~~~--------~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D 84 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEH--------DNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKD 84 (244)
T ss_dssp HHHHHHHHTTCCCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCC
T ss_pred HHHHHHHHHhCCCCCC--------CEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEECh
Confidence 4556666666655444 789999999999999999886 56899999999999998763 246777888
Q ss_pred ccCCCCCC-CCccEEEeccccccccccH-----------HHHH----HHHHhcccCCeEEE
Q 017377 271 SRQLPYPS-LSFDMVHCAQCGIIWDKKE-----------GIFL----IEADRLLKPGGYFV 315 (372)
Q Consensus 271 ~~~lp~~~-~sFDlV~~~~~~~~~~~~~-----------~~~L----~el~rvLkPGG~lv 315 (372)
+..+++++ ..| .|+++- -+++.... ..++ ..+.|+++|||.+.
T Consensus 85 ~~~~~~~~~~~~-~vv~nl-Py~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 85 ILQFKFPKNQSY-KIFGNI-PYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp GGGCCCCSSCCC-EEEEEC-CGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred HHhCCcccCCCe-EEEEeC-CcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 88888874 456 455542 23321111 1122 33788888888543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.9e-09 Score=102.01 Aligned_cols=115 Identities=23% Similarity=0.182 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ 273 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~ 273 (372)
....+.+.+.+....+ .+|||+|||+|.++..++++......++|+|+++.+++.| ..+.+...|...
T Consensus 25 ~~l~~~~~~~~~~~~~--------~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~ 92 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRG--------GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLL 92 (421)
T ss_dssp HHHHHHHHHHCCCCTT--------CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGG
T ss_pred HHHHHHHHHhhccCCC--------CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhh
Confidence 4556677776654222 5899999999999999987521235799999999998777 345566666665
Q ss_pred CCCCCCCccEEEecccccc----------ccccH------------------HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 274 LPYPSLSFDMVHCAQCGII----------WDKKE------------------GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 274 lp~~~~sFDlV~~~~~~~~----------~~~~~------------------~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+ +++.||+|+++--... ..++. ..++..+.++|+|||.+++..|..
T Consensus 93 ~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 93 WE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp CC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 54 3578999999622111 11111 146889999999999999998853
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-10 Score=105.95 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeec
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFIS 271 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~ 271 (372)
...+.+.+.+....+ .+|||||||+|.++..+++.+ ..++++|+++.+++.|+++. .++.+...|.
T Consensus 16 ~~~~~i~~~~~~~~~--------~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~ 84 (245)
T 1yub_A 16 KVLNQIIKQLNLKET--------DTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI 84 (245)
T ss_dssp TTHHHHHHHCCCCSS--------EEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECCh
Confidence 355667777765554 789999999999999999885 56999999999998887652 2356667788
Q ss_pred cCCCCCC-CCccEEEecccccccc-----------ccHHHHH----HHHHhcccCCeEEEEEeC
Q 017377 272 RQLPYPS-LSFDMVHCAQCGIIWD-----------KKEGIFL----IEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 272 ~~lp~~~-~sFDlV~~~~~~~~~~-----------~~~~~~L----~el~rvLkPGG~lvis~p 319 (372)
..+++++ ++| .|+++-- ++.. .....++ ..+.|+|+|||.+.+...
T Consensus 85 ~~~~~~~~~~f-~vv~n~P-y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 85 LQFQFPNKQRY-KIVGNIP-YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp TTTTCCCSSEE-EEEEECC-SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred hhcCcccCCCc-EEEEeCC-ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 8888774 689 6777522 1111 1111233 669999999999876554
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-08 Score=96.12 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
+.+.+.+.+.+....+ .+|||+|||+|.++..|++.+ ..++|+|+|+.+++.|+++ ++ ++.+..
T Consensus 272 e~l~~~~~~~l~~~~~--------~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~ 340 (433)
T 1uwv_A 272 QKMVARALEWLDVQPE--------DRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 (433)
T ss_dssp HHHHHHHHHHHTCCTT--------CEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHhhcCCCC--------CEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 3455566666654443 689999999999999999873 5699999999999988764 44 466777
Q ss_pred eeccC----CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQ----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~----lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.|+.. +++++++||+|+++--.... ..++..+. .++|++.++++..
T Consensus 341 ~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~----~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA----AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTTCC----HHHHHHHH-HHCCSEEEEEESC
T ss_pred CCHHHHhhhhhhhcCCCCEEEECCCCccH----HHHHHHHH-hcCCCeEEEEECC
Confidence 77665 44667899999986332211 13455444 3789999888743
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=94.91 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=69.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+ ..++++|+++.+++.|+++ ++.+.+...|+..+.. .+||+|++.-.....
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAGL 366 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTCS
T ss_pred CEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccch
Confidence 689999999999999999874 4699999999999988765 5566677777766542 289999996432111
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...++..+. .|+|||.++++..
T Consensus 367 ---~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 367 ---HPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp ---CHHHHHHHH-HHCCSEEEEEESC
T ss_pred ---HHHHHHHHH-hcCCCcEEEEECC
Confidence 123555554 5999999999853
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=96.89 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=73.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++.. +. + ...++++|+++.+++.|+++ ++ .+.+...|+.... ++||+|++.--..
T Consensus 197 ~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF 269 (336)
T ss_dssp CEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT
T ss_pred CEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh
Confidence 7899999999999999 76 3 35799999999999988765 54 4677777776665 7899999863211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...++.++.++|+|||.+++.+...
T Consensus 270 -----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp -----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 1258899999999999999987644
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=94.77 Aligned_cols=88 Identities=22% Similarity=0.120 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+...++ .+|||||||+|.++..|++.+ ..++++|+++.+++.++++- .++.+...|
T Consensus 36 ~~i~~~Iv~~l~~~~~--------~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD 104 (295)
T 3gru_A 36 KNFVNKAVESANLTKD--------DVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGD 104 (295)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECc
Confidence 4567778888776665 789999999999999999874 56899999999999888762 457788888
Q ss_pred ccCCCCCCCCccEEEeccccccc
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
+..+++++.+||+|+++.. +++
T Consensus 105 ~l~~~~~~~~fD~Iv~NlP-y~i 126 (295)
T 3gru_A 105 ALKVDLNKLDFNKVVANLP-YQI 126 (295)
T ss_dssp TTTSCGGGSCCSEEEEECC-GGG
T ss_pred hhhCCcccCCccEEEEeCc-ccc
Confidence 8888888889999998843 444
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-08 Score=98.69 Aligned_cols=117 Identities=20% Similarity=0.131 Sum_probs=83.9
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcC------------CceeEEEEeeCCHHHHHHHHHc--
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLK------------LMAVCVAVYEATGSQVQLALER-- 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~------------~~~~~v~gvD~s~~~v~~A~~r-- 260 (372)
...+.+.+.+....+ .+|||.|||+|.++..+++.- .....++|+|+++.+++.|+.+
T Consensus 158 ~v~~~mv~~l~~~~~--------~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINPQMG--------ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCCCTT--------CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC--------CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 456677777754443 689999999999998887641 0124589999999999988764
Q ss_pred --CC---CeEEEEeeccCCCCCCCCccEEEecccccccc--cc--------------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 --GL---PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD--KK--------------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 --gl---~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~--~~--------------~~~~L~el~rvLkPGG~lvis~p 319 (372)
++ ...+...|+...+.. ..||+|+++--+.+.. .. ...++..+.++|+|||++++..|
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 55 445666666655543 4899999984433211 10 13589999999999999999987
Q ss_pred C
Q 017377 320 E 320 (372)
Q Consensus 320 ~ 320 (372)
.
T Consensus 309 ~ 309 (445)
T 2okc_A 309 D 309 (445)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=90.97 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=74.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc-------------------------------------eeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM-------------------------------------AVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~-------------------------------------~~~v~gvD~s~~~v~~A~~r 260 (372)
.+|||+|||+|.++..++..+.. ...|+|+|+++.+++.|+++
T Consensus 197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~N 276 (385)
T 3ldu_A 197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAREN 276 (385)
T ss_dssp SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHH
Confidence 78999999999999888765211 14699999999999998875
Q ss_pred ----CC--CeEEEEeeccCCCCCCCCccEEEeccccc-ccc--ccHHHHHHHHHhcccC--CeEEEEEeCC
Q 017377 261 ----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI-IWD--KKEGIFLIEADRLLKP--GGYFVLTSPE 320 (372)
Q Consensus 261 ----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~-~~~--~~~~~~L~el~rvLkP--GG~lvis~p~ 320 (372)
++ .+.+...|..+++.+ .+||+|+++--.. ... ++...+..++.++|++ ||.+++.++.
T Consensus 277 a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 277 AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 66 367778888887765 5899999974321 111 2233566677777776 8888888774
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-07 Score=90.46 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=73.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc-------------------------------------eeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM-------------------------------------AVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~-------------------------------------~~~v~gvD~s~~~v~~A~~r 260 (372)
..|||.+||+|+++..++..... ...|+|+|+++.+++.|+++
T Consensus 203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~N 282 (393)
T 3k0b_A 203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQN 282 (393)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHH
Confidence 68999999999998877764221 14589999999999988865
Q ss_pred ----CCC--eEEEEeeccCCCCCCCCccEEEecccc-cccc--ccHHHHHHHHHhcccC--CeEEEEEeCC
Q 017377 261 ----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG-IIWD--KKEGIFLIEADRLLKP--GGYFVLTSPE 320 (372)
Q Consensus 261 ----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~-~~~~--~~~~~~L~el~rvLkP--GG~lvis~p~ 320 (372)
|+. +.+...|+.+++.+ .+||+|+++--. .... .+...+..++.++||+ ||.+++.++.
T Consensus 283 a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 283 AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 553 67777888888765 589999998221 1111 1223455666666665 8888888774
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-07 Score=89.17 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=81.1
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCc----------------------------------
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM---------------------------------- 240 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~---------------------------------- 240 (372)
.+...+.......++ ..|||.+||+|++...++.....
T Consensus 181 ~LAaall~l~~~~~~--------~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 252 (384)
T 3ldg_A 181 NMAAAIILLSNWFPD--------KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQAD 252 (384)
T ss_dssp HHHHHHHHHTTCCTT--------SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCC--------CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhh
Confidence 344445544444443 68999999999998887754221
Q ss_pred ---eeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-cccc--ccHHHHHHHHHhcc
Q 017377 241 ---AVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG-IIWD--KKEGIFLIEADRLL 308 (372)
Q Consensus 241 ---~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~-~~~~--~~~~~~L~el~rvL 308 (372)
...++|+|+++.+++.|+++ |+. +.+...|+.+++.+ .+||+|+++--. .... .+...+..++.+.|
T Consensus 253 ~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l 331 (384)
T 3ldg_A 253 YDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETF 331 (384)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence 14599999999999988865 553 67778888888765 489999998221 1121 23345666677777
Q ss_pred cC--CeEEEEEeCC
Q 017377 309 KP--GGYFVLTSPE 320 (372)
Q Consensus 309 kP--GG~lvis~p~ 320 (372)
|+ ||.+++.++.
T Consensus 332 k~~~g~~~~iit~~ 345 (384)
T 3ldg_A 332 APLKTWSQFILTND 345 (384)
T ss_dssp TTCTTSEEEEEESC
T ss_pred hhCCCcEEEEEECC
Confidence 76 9999988774
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=87.84 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+...++ .+|||||||+|.++..|++.+ ..++++|+++.+++.++++- .++.+...|
T Consensus 15 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D 83 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKT--------DTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQND 83 (255)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcc
Confidence 4567778888877665 789999999999999999875 46999999999999998762 357788888
Q ss_pred ccCCCCCC----CCccEEEec
Q 017377 271 SRQLPYPS----LSFDMVHCA 287 (372)
Q Consensus 271 ~~~lp~~~----~sFDlV~~~ 287 (372)
+..+++++ +.|| |+++
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEEE
T ss_pred hHhCCHHHhccCCCeE-EEec
Confidence 88887653 5688 6666
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-07 Score=85.36 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=66.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH---cCCCeEEEEeeccCCCCCCCCccEEEecccc---c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE---RGLPAMIGNFISRQLPYPSLSFDMVHCAQCG---I 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~---rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~---~ 291 (372)
.+|||+|||+|.|+.+++++. ....+.++|++..+...... .+.++.....++....++++.||+|+|..+. .
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~ 154 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSS 154 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSC
T ss_pred CEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCcCc
Confidence 689999999999999988763 23557778887443111110 1223343333444456778899999997532 2
Q ss_pred cccccHH--HHHHHHHhcccCC-eEEEEEeCC
Q 017377 292 IWDKKEG--IFLIEADRLLKPG-GYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~~--~~L~el~rvLkPG-G~lvis~p~ 320 (372)
++.+... .+|..+.++|+|| |.|++....
T Consensus 155 ~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 155 SVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 2323322 3568889999999 999998775
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.5e-07 Score=84.30 Aligned_cols=115 Identities=10% Similarity=-0.031 Sum_probs=77.7
Q ss_pred HHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC
Q 017377 200 IAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL 274 (372)
Q Consensus 200 l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l 274 (372)
+...+...++ .+|||+|||+|..+..+++.-.....|+++|+++.+++.++++ |+ ++.+...|...+
T Consensus 94 ~~~~l~~~~g--------~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~ 165 (309)
T 2b9e_A 94 PAMLLDPPPG--------SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 165 (309)
T ss_dssp HHHHHCCCTT--------CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGS
T ss_pred HHHHhCCCCC--------CEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhc
Confidence 3345555555 7899999999999999988521235699999999999887765 65 366777777666
Q ss_pred CCCC---CCccEEEec-----cccc-c-----c----c-cc-------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 275 PYPS---LSFDMVHCA-----QCGI-I-----W----D-KK-------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 275 p~~~---~sFDlV~~~-----~~~~-~-----~----~-~~-------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+... ++||.|++. .... . | . .+ ...+|..+.++|+ ||+++.++.....
T Consensus 166 ~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 166 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ 239 (309)
T ss_dssp CTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred CccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence 5432 579999972 1111 1 0 1 11 1246777888887 9999998875543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.3e-07 Score=84.48 Aligned_cols=87 Identities=18% Similarity=0.102 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~ 271 (372)
....+.+.+.+...+ . +|||||||+|.++..|++.+ ..++++|+++.+++.++++- .++.+...|+
T Consensus 33 ~~i~~~Iv~~~~~~~--------~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~ 100 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--------G-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDA 100 (271)
T ss_dssp HHHHHHHHHHHCCCC--------S-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCG
T ss_pred HHHHHHHHHhcCCCC--------C-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECCh
Confidence 456777777776533 2 79999999999999999986 45899999999999998863 3477788888
Q ss_pred cCCCCCCC-CccEEEeccccccc
Q 017377 272 RQLPYPSL-SFDMVHCAQCGIIW 293 (372)
Q Consensus 272 ~~lp~~~~-sFDlV~~~~~~~~~ 293 (372)
..+++++. .+|.|+++.- ++.
T Consensus 101 l~~~~~~~~~~~~iv~NlP-y~i 122 (271)
T 3fut_A 101 LLYPWEEVPQGSLLVANLP-YHI 122 (271)
T ss_dssp GGSCGGGSCTTEEEEEEEC-SSC
T ss_pred hhCChhhccCccEEEecCc-ccc
Confidence 88887653 6899998843 444
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=90.71 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=66.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC--CCC------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP--YPS------------ 278 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp--~~~------------ 278 (372)
.+|||+|||+|.++..++... ..|+++|+++.+++.|+++ ++ ++.+...|+.++. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 579999999999999998753 4699999999999988764 55 4566666554321 111
Q ss_pred --CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 279 --LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 279 --~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+||+|++.--.. .+..++.+.|+++|.+++.+.+
T Consensus 292 ~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp GGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEESC
T ss_pred ccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEECC
Confidence 3799998752211 1345567777899998888764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-07 Score=86.16 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCc-eeEEEEeeCCHHHHHHHHHc-CCCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQLALER-GLPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~-~~~v~gvD~s~~~v~~A~~r-gl~~~~~~~d~ 271 (372)
....+.+.+.+....+ .+|||||||+|.++..|++.+.. ...++++|+++.+++.++++ ..++.+...|+
T Consensus 28 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~ 99 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERG--------ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA 99 (279)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh
Confidence 4567788888876665 78999999999999999987432 23489999999999999887 33567778888
Q ss_pred cCCCCCCC------CccEEEec
Q 017377 272 RQLPYPSL------SFDMVHCA 287 (372)
Q Consensus 272 ~~lp~~~~------sFDlV~~~ 287 (372)
..+++++- ..+.|++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~vv~N 121 (279)
T 3uzu_A 100 LTFDFGSIARPGDEPSLRIIGN 121 (279)
T ss_dssp GGCCGGGGSCSSSSCCEEEEEE
T ss_pred hcCChhHhcccccCCceEEEEc
Confidence 88887542 23456665
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-06 Score=79.21 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-CCCeEEEEeecc
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISR 272 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-gl~~~~~~~d~~ 272 (372)
....+.+.+.+....+ .+|||||||+|.++..|++.+ ...++++|+++.+++.++++ ..++.+...|+.
T Consensus 17 ~~i~~~iv~~~~~~~~--------~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEG--------NTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDAS 86 (249)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTT
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchh
Confidence 4567778887776555 789999999999999999874 25689999999999999887 224677778888
Q ss_pred CCCCCCCC-ccEEEec
Q 017377 273 QLPYPSLS-FDMVHCA 287 (372)
Q Consensus 273 ~lp~~~~s-FDlV~~~ 287 (372)
.+++++.. ...|+++
T Consensus 87 ~~~~~~~~~~~~vv~N 102 (249)
T 3ftd_A 87 KFPFCSLGKELKVVGN 102 (249)
T ss_dssp TCCGGGSCSSEEEEEE
T ss_pred hCChhHccCCcEEEEE
Confidence 88876432 2255555
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.9e-07 Score=91.61 Aligned_cols=118 Identities=15% Similarity=0.053 Sum_probs=81.6
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcC---C--------------ceeEEEEeeCCHHHHHHH
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLK---L--------------MAVCVAVYEATGSQVQLA 257 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~---~--------------~~~~v~gvD~s~~~v~~A 257 (372)
...+.+.+.+....+ .+|||.+||+|.|...+++.- . ....++|+|+++.+++.|
T Consensus 156 ~iv~~mv~~l~p~~~--------~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 156 PLIKTIIHLLKPQPR--------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp HHHHHHHHHHCCCTT--------CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhccCCC--------CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 345667777754443 689999999999988876541 0 123589999999999998
Q ss_pred HHc----CCC------eEEEEeeccCCC-CCCCCccEEEecccccccc-------------ccHHHHHHHHHhcccCCeE
Q 017377 258 LER----GLP------AMIGNFISRQLP-YPSLSFDMVHCAQCGIIWD-------------KKEGIFLIEADRLLKPGGY 313 (372)
Q Consensus 258 ~~r----gl~------~~~~~~d~~~lp-~~~~sFDlV~~~~~~~~~~-------------~~~~~~L~el~rvLkPGG~ 313 (372)
+.+ ++. ..+...|+...+ .+.+.||+|+++--+.... .....++..+.+.|+|||+
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 307 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 307 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence 864 544 345555544332 3457899999973322110 1123588999999999999
Q ss_pred EEEEeCC
Q 017377 314 FVLTSPE 320 (372)
Q Consensus 314 lvis~p~ 320 (372)
+++..|+
T Consensus 308 ~a~V~p~ 314 (541)
T 2ar0_A 308 AAVVVPD 314 (541)
T ss_dssp EEEEEEH
T ss_pred EEEEecC
Confidence 9999874
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=85.27 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=72.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC-C-CCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL-P-YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l-p-~~~~sFDlV~~~~ 288 (372)
.+|||++||+|.++..++.+......|+++|+++.+++.++++ ++. +.+...|+..+ . ...+.||+|++.-
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 6899999999999999998632235799999999999988765 654 55666665332 1 1246799999873
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. .....++..+.+.|+|||+++++..
T Consensus 134 ----~-g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 134 ----F-GTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp ----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----C-cCHHHHHHHHHHHhCCCCEEEEEec
Confidence 1 1123488889999999999988763
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=84.21 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhc--------------CCceeEEEEeeCCHHHHHHH-HHc------------------CCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL--------------KLMAVCVAVYEATGSQVQLA-LER------------------GLP 263 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~--------------~~~~~~v~gvD~s~~~v~~A-~~r------------------gl~ 263 (372)
..+|+|+|||+|..+..+++. ......|..-|...+..... +.. +.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999998887331 12356777778766553211 110 001
Q ss_pred eEEEEe-eccCCCCCCCCccEEEeccccccccc--------------------------------------cHHHHHHHH
Q 017377 264 AMIGNF-ISRQLPYPSLSFDMVHCAQCGIIWDK--------------------------------------KEGIFLIEA 304 (372)
Q Consensus 264 ~~~~~~-d~~~lp~~~~sFDlV~~~~~~~~~~~--------------------------------------~~~~~L~el 304 (372)
...++. +...-.||+++||+|+++.+ +||.. |...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 22334589999999999977 77743 223468889
Q ss_pred HhcccCCeEEEEEeCCCCC
Q 017377 305 DRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 305 ~rvLkPGG~lvis~p~~~~ 323 (372)
.+.|+|||.++++......
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHEEEEEEEEEEEEECCC
T ss_pred HHHhCCCCEEEEEEecCCC
Confidence 9999999999999876544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=84.04 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhc----------------CCceeEEEEeeCC-----------HHHHHHHHH-cC--CCeEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL----------------KLMAVCVAVYEAT-----------GSQVQLALE-RG--LPAMI 266 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~----------------~~~~~~v~gvD~s-----------~~~v~~A~~-rg--l~~~~ 266 (372)
.-+|+|+||++|..+..+++. ......|..-|.. +.+.+.+.+ .| .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999998887764 1235778888887 444444333 23 23333
Q ss_pred EEe---eccCCCCCCCCccEEEeccccccccccHH---------------------------------------HHHHHH
Q 017377 267 GNF---ISRQLPYPSLSFDMVHCAQCGIIWDKKEG---------------------------------------IFLIEA 304 (372)
Q Consensus 267 ~~~---d~~~lp~~~~sFDlV~~~~~~~~~~~~~~---------------------------------------~~L~el 304 (372)
..+ +...-.||+++||+|+++.+ +||..+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 23345689999999999977 78842211 126666
Q ss_pred HhcccCCeEEEEEeCCCCC
Q 017377 305 DRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 305 ~rvLkPGG~lvis~p~~~~ 323 (372)
.+.|+|||.++++......
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 212 SEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHEEEEEEEEEEEECCCT
T ss_pred HHHhccCCeEEEEEecCCC
Confidence 8999999999999887655
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-06 Score=86.55 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=75.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHH---HHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCCC--eE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSF---GAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLP--AM 265 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~---~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl~--~~ 265 (372)
.|.+.|.+.+.......-.......|||||||+|.+ +...++++.....|.++|-++.+. .|+ +++.. +.
T Consensus 336 ~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVt 414 (637)
T 4gqb_A 336 QYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVT 414 (637)
T ss_dssp HHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEE
T ss_pred HHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEE
Confidence 455566655532111011112335799999999988 444444444556789999998554 333 33443 67
Q ss_pred EEEeeccCCCCCCCCccEEEeccccccc-cccHHHHHHHHHhcccCCeEEE
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIW-DKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~-~~~~~~~L~el~rvLkPGG~lv 315 (372)
+...+++++..| +.+|+|++.-.-... .+-...+|...+|.|||||.++
T Consensus 415 VI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 415 VVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 777888888776 679999996321111 1222357788899999999876
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=88.19 Aligned_cols=118 Identities=18% Similarity=0.095 Sum_probs=78.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCC-----------------------------------
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL----------------------------------- 239 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~----------------------------------- 239 (372)
.+...+.......++ ..|||.+||+|.++..++....
T Consensus 177 ~LAa~ll~~~~~~~~--------~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~ 248 (703)
T 3v97_A 177 TLAAAIVMRSGWQPG--------TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRA 248 (703)
T ss_dssp HHHHHHHHHTTCCTT--------SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCC--------CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 344455555444433 6899999999999887765310
Q ss_pred ------ceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC--CCCCCCccEEEec--cccccccc--cHHH--
Q 017377 240 ------MAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL--PYPSLSFDMVHCA--QCGIIWDK--KEGI-- 299 (372)
Q Consensus 240 ------~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l--p~~~~sFDlV~~~--~~~~~~~~--~~~~-- 299 (372)
....++|+|+++.+++.|+++ |+. +.+...|+..+ |..+++||+|+++ +. ..+.. +...
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG-~Rlg~~~~l~~ly 327 (703)
T 3v97_A 249 RKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG-ERLDSEPALIALH 327 (703)
T ss_dssp HHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCC-C---CCHHHHHHH
T ss_pred hhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcc-ccccchhHHHHHH
Confidence 114699999999999988865 664 56777777776 4444589999998 32 11111 2222
Q ss_pred -HHHHHHhcccCCeEEEEEeCCC
Q 017377 300 -FLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 300 -~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+.++.+.+.|||.+++.++..
T Consensus 328 ~~l~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 328 SLLGRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHHHHhhCCCCeEEEEeCCH
Confidence 3445556666899999987743
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=83.12 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=64.9
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEee
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFI 270 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d 270 (372)
...+.+.+.+...++ .+|||+|||+|.++..++++.. ...++++|.++.+++.|+++ +..+.+...+
T Consensus 13 vLl~e~l~~L~~~~g--------~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d 83 (301)
T 1m6y_A 13 VMVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVS 83 (301)
T ss_dssp TTHHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECC
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECC
Confidence 355667777776555 7899999999999999998743 46799999999999999876 2356677777
Q ss_pred ccCCC--CC---CCCccEEEecc
Q 017377 271 SRQLP--YP---SLSFDMVHCAQ 288 (372)
Q Consensus 271 ~~~lp--~~---~~sFDlV~~~~ 288 (372)
...++ ++ .++||.|++..
T Consensus 84 ~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 84 YREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCCCEEEEcC
Confidence 66654 11 15799999853
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=85.52 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=69.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-------------------CCC-eEEEEeeccCCCC-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-------------------GLP-AMIGNFISRQLPY- 276 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-------------------gl~-~~~~~~d~~~lp~- 276 (372)
.+|||+|||+|.++..++.+.. ...|+++|+++.+++.++++ ++. +.+...|+..+..
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 6899999999999999998732 24589999999999888754 444 5555555543321
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
..+.||+|++.- . .....++..+.+.|+|||.++++.
T Consensus 128 ~~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999642 1 112358889999999999988875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=86.34 Aligned_cols=117 Identities=21% Similarity=0.109 Sum_probs=78.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCC--------------ceeEEEEeeCCHHHHHHHHHc
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL--------------MAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~--------------~~~~v~gvD~s~~~v~~A~~r 260 (372)
...+.|.+.+.... .+|||.+||+|.|...+++.-. ....++|+|+++.+++.|+.+
T Consensus 232 ~Vv~lmv~ll~p~~---------~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 232 SIVTLIVEMLEPYK---------GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp HHHHHHHHHHCCCS---------EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---------CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 34555666554321 3899999999999877654200 136799999999999988864
Q ss_pred ----CCCeEE--EEeeccCCC-CCCCCccEEEeccccc--cccc--------------------------cHHHHHHHHH
Q 017377 261 ----GLPAMI--GNFISRQLP-YPSLSFDMVHCAQCGI--IWDK--------------------------KEGIFLIEAD 305 (372)
Q Consensus 261 ----gl~~~~--~~~d~~~lp-~~~~sFDlV~~~~~~~--~~~~--------------------------~~~~~L~el~ 305 (372)
|+...+ ...|+...+ +++..||+|+++--+. .|.. ..-.++..+.
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l 382 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHML 382 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHH
T ss_pred HHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHH
Confidence 554333 344443333 4568999999972211 1110 1125789999
Q ss_pred hcccCCeEEEEEeCC
Q 017377 306 RLLKPGGYFVLTSPE 320 (372)
Q Consensus 306 rvLkPGG~lvis~p~ 320 (372)
+.|+|||++++..|.
T Consensus 383 ~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 383 YHLAPTGSMALLLAN 397 (544)
T ss_dssp HTEEEEEEEEEEEET
T ss_pred HHhccCceEEEEecc
Confidence 999999999999875
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=82.04 Aligned_cols=122 Identities=21% Similarity=0.228 Sum_probs=82.9
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcC--CceeEEEEeeCCHHHHHHHHHc----CCC---eE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLK--LMAVCVAVYEATGSQVQLALER----GLP---AM 265 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~--~~~~~v~gvD~s~~~v~~A~~r----gl~---~~ 265 (372)
...+.+.+.+..... .....+|||.+||+|.|...+++.- .....++|+|+++.++..|+.+ |+. ..
T Consensus 204 ~Vv~lmv~ll~~~~~----~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~ 279 (542)
T 3lkd_A 204 PVAKLMTQIAFLGRE----DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF 279 (542)
T ss_dssp HHHHHHHHHHHTTCT----TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHhcccC----CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccc
Confidence 345666666653110 0123689999999999988877651 1246799999999999988764 652 45
Q ss_pred EEEeeccCC--C-CCCCCccEEEecccc-cccc---------------------ccHHHHHHHHHhccc-CCeEEEEEeC
Q 017377 266 IGNFISRQL--P-YPSLSFDMVHCAQCG-IIWD---------------------KKEGIFLIEADRLLK-PGGYFVLTSP 319 (372)
Q Consensus 266 ~~~~d~~~l--p-~~~~sFDlV~~~~~~-~~~~---------------------~~~~~~L~el~rvLk-PGG~lvis~p 319 (372)
+...|+... | ++...||+|+++--+ ..|. ...-.++..+.+.|+ |||++.+..|
T Consensus 280 I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 280 LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred eEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 666666554 3 456789999997111 1110 001247899999999 9999999988
Q ss_pred C
Q 017377 320 E 320 (372)
Q Consensus 320 ~ 320 (372)
.
T Consensus 360 ~ 360 (542)
T 3lkd_A 360 H 360 (542)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=79.43 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d 270 (372)
....+.+.+.+...++ .+|||||||+|.++. +. ++ ....++++|+++.|++.++++.. ++.+...|
T Consensus 7 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D 75 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKG--------QAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQD 75 (252)
T ss_dssp HHHHHHHHHHHCCCTT--------CCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECc
Confidence 3566777777776555 789999999999999 64 33 21238999999999999988642 46777788
Q ss_pred ccCCCCCCC-----CccEEEecc
Q 017377 271 SRQLPYPSL-----SFDMVHCAQ 288 (372)
Q Consensus 271 ~~~lp~~~~-----sFDlV~~~~ 288 (372)
+..+++++. ..|.|+++-
T Consensus 76 ~~~~~~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 76 AMTFNFGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp GGGCCHHHHHHHHTSCEEEEEEC
T ss_pred hhhCCHHHhhcccCCceEEEECC
Confidence 888776532 346777763
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.3e-06 Score=77.04 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=53.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCH-------HHHHHHHHc----CC-C-eEEEEeeccCC-C-CCC--CC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG-------SQVQLALER----GL-P-AMIGNFISRQL-P-YPS--LS 280 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~-------~~v~~A~~r----gl-~-~~~~~~d~~~l-p-~~~--~s 280 (372)
.+|||+|||+|.++..++..+ ..|+++|+++ .+++.|+++ ++ + +.+...|...+ + +++ ++
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 689999999999999999875 4589999999 999888754 22 2 66666666553 3 444 78
Q ss_pred ccEEEeccc
Q 017377 281 FDMVHCAQC 289 (372)
Q Consensus 281 FDlV~~~~~ 289 (372)
||+|++.-.
T Consensus 162 fD~V~~dP~ 170 (258)
T 2r6z_A 162 PDIVYLDPM 170 (258)
T ss_dssp CSEEEECCC
T ss_pred ccEEEECCC
Confidence 999999744
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-06 Score=83.39 Aligned_cols=106 Identities=17% Similarity=0.257 Sum_probs=74.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---------------CCceeEEEEeeCCHHHHHHHHHcCC------CeEEEEe---ecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---------------KLMAVCVAVYEATGSQVQLALERGL------PAMIGNF---ISR 272 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---------------~~~~~~v~gvD~s~~~v~~A~~rgl------~~~~~~~---d~~ 272 (372)
.-+|+|+||++|..+..+.+. ......|...|...+.....-..-. +..+..+ +..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999887766554 2456788889988877765544311 2233322 233
Q ss_pred CCCCCCCCccEEEecccccccccc---------------------------------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKK---------------------------------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~---------------------------------~~~~L~el~rvLkPGG~lvis~p 319 (372)
.-.||++++|+|+++.+ .||..+ ...+|+...+.|+|||.++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 46789999999999976 778422 12348888999999999999987
Q ss_pred CCCC
Q 017377 320 ESKP 323 (372)
Q Consensus 320 ~~~~ 323 (372)
....
T Consensus 211 gr~~ 214 (359)
T 1m6e_X 211 GRRS 214 (359)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 5544
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.1e-06 Score=76.95 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=64.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH---cCCCeEEEEeeccCCCCCCCCccEEEecccccc--
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE---RGLPAMIGNFISRQLPYPSLSFDMVHCAQCGII-- 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~---rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~-- 292 (372)
.+|||+|||+|.|+.+++++. ....+.|+|++..+...+.. .+.++....-++....++.+.+|+|+|..+ .+
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmA-pnsG 169 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIG-ESSP 169 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCC-CCCS
T ss_pred CEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCc-cCCC
Confidence 689999999999999988653 34568899997653222211 022222222122223456789999999744 33
Q ss_pred --ccccHH--HHHHHHHhcccCC--eEEEEEeCC
Q 017377 293 --WDKKEG--IFLIEADRLLKPG--GYFVLTSPE 320 (372)
Q Consensus 293 --~~~~~~--~~L~el~rvLkPG--G~lvis~p~ 320 (372)
+.+... .+|.-+.++|+|| |.|++-...
T Consensus 170 ~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 170 SIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 112222 2466678899999 999998775
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.4e-05 Score=72.05 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----------CCCeEEEEeeccC-CCCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----------GLPAMIGNFISRQ-LPYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----------gl~~~~~~~d~~~-lp~~~~sFDlV 284 (372)
.+++||=||.|.|..+..+++.. ....++.+|+++..++.+++. ...+.+...|... +.-..++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45899999999999999999873 346788999999999998764 1235555555443 23456789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.-.. -..... ...+++.+++.|+|||.++.....+
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 97522 221111 1258999999999999999875543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1.2e-05 Score=83.88 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=66.3
Q ss_pred CeEEEeCCCCcHHHHHHHhc----C--------CceeEEEEeeCCHHHHHHHHH---cCC--CeEEEEeeccCCCCC---
Q 017377 218 QSVLDVGCGFGSFGAHLVSL----K--------LMAVCVAVYEATGSQVQLALE---RGL--PAMIGNFISRQLPYP--- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~----~--------~~~~~v~gvD~s~~~v~~A~~---rgl--~~~~~~~d~~~lp~~--- 277 (372)
..|||||||+|.+....+.. + .....|+++|-++..+...+. ++. .+.+...+++++..|
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~ 490 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKD 490 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccccc
Confidence 57999999999996432211 1 124579999999876643332 344 366777788877664
Q ss_pred --CCCccEEEeccccccc-cccHHHHHHHHHhcccCCeEEE
Q 017377 278 --SLSFDMVHCAQCGIIW-DKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 278 --~~sFDlV~~~~~~~~~-~~~~~~~L~el~rvLkPGG~lv 315 (372)
.+.+|+|++...-... .+-....|..+.|.|||||.++
T Consensus 491 ~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 491 RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5789999997432211 1222357888899999999876
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.3e-05 Score=80.83 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=69.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC--ceeEEEEeeCCHHHHHHH--HHc--------CCCe-EEEEeeccCC-CCCCCCccE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL--MAVCVAVYEATGSQVQLA--LER--------GLPA-MIGNFISRQL-PYPSLSFDM 283 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~--~~~~v~gvD~s~~~v~~A--~~r--------gl~~-~~~~~d~~~l-p~~~~sFDl 283 (372)
.+|||.|||+|.+...+++... ....++|+|+++.+++.| +.. ++.. .+...+.... +...+.||+
T Consensus 323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFDV 402 (878)
T 3s1s_A 323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSV 402 (878)
T ss_dssp CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEEE
T ss_pred CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCCE
Confidence 6899999999999999887632 235689999999999988 322 2222 2332233222 234578999
Q ss_pred EEecccccc-cc--c------------------------c-HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 284 VHCAQCGII-WD--K------------------------K-EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 284 V~~~~~~~~-~~--~------------------------~-~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+++--... +. . + ...++..+.+.|+|||++++..|.
T Consensus 403 VIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 403 VVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred EEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 999833211 10 0 0 123678899999999999999885
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=65.73 Aligned_cols=91 Identities=11% Similarity=-0.044 Sum_probs=62.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC----CeEEEEeeccC---------------C
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL----PAMIGNFISRQ---------------L 274 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl----~~~~~~~d~~~---------------l 274 (372)
++||||||| ..+..++.. . ...|+.+|.++...+.|++. |+ .+.+...++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 789999985 566677664 2 46789999999999888753 54 24455455322 2
Q ss_pred C--------C-CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 275 P--------Y-PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 275 p--------~-~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+ . ..++||+|+.-.- .....+..+.+.|+|||.+++..
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEeC
Confidence 2 1 2378999998742 11245666779999999996653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.5e-06 Score=80.17 Aligned_cols=67 Identities=16% Similarity=0.028 Sum_probs=53.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------CC-CeEEEEeeccCC-CC-CCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GL-PAMIGNFISRQL-PY-PSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------gl-~~~~~~~d~~~l-p~-~~~sFDlV~~~ 287 (372)
.+|||+|||+|..+..|+..+ ..|+++|+++.+++.|+++ |+ ++.+...|+... +. ++++||+|++.
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 789999999999999998774 4699999999999988765 55 356777776653 32 34689999995
|
| >3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.8e-06 Score=71.83 Aligned_cols=61 Identities=8% Similarity=-0.050 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.=+|.++|++..|+=|||+.|++.. .|..||||.|++.|+.+|..|..|..-|. ++++-.
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~---sL~eIk 66 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGL---SIEALI 66 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTC---CHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 34578999999999999999999987 78899999999999999999999987777 454443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00034 Score=67.91 Aligned_cols=119 Identities=10% Similarity=-0.030 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||+||++|.|+..+++++ ..|+++|+.+.. .... ....+.+...|......+.+.||+|+|--. .+
T Consensus 212 G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l~-~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-----~~ 281 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPMA-QSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMV-----EK 281 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCCC-HHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCS-----SC
T ss_pred CCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhcC-hhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCC-----CC
Confidence 3899999999999999999986 468999986422 2222 223466666677777777788999999633 33
Q ss_pred HHHHHHHHHhcccC---CeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCee
Q 017377 297 EGIFLIEADRLLKP---GGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWS 349 (372)
Q Consensus 297 ~~~~L~el~rvLkP---GG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~ 349 (372)
+...+.-+.+.|.. ++.++..-..... ...+....++.+....+..+..
T Consensus 282 p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~----~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 282 PAKVAALMAQWLVNGWCRETIFNLKLPMKK----RYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEEECCSSS----HHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHhHHHHHHHHhccccceEEEEEEecccc----hHHHHHHHHHHHHHHHHhcCcc
Confidence 33344444444444 3544433222211 0112334455555555544443
|
| >3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.6e-06 Score=72.42 Aligned_cols=55 Identities=7% Similarity=-0.054 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcccccccceeccCCCC-ccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.=||.++|+|..|+=|||+.|++... |..||||.|++.|+.+|..|..+..-|.
T Consensus 7 I~evA~~~Gvs~~tLR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 62 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGF 62 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcCC
Confidence 345789999999999999999999865 7889999999999999999999877777
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=71.98 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=57.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH-------HHHHHc----C-C--CeEEEEeeccC-CCCCCCCcc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV-------QLALER----G-L--PAMIGNFISRQ-LPYPSLSFD 282 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v-------~~A~~r----g-l--~~~~~~~d~~~-lp~~~~sFD 282 (372)
.+|||+|||+|..+..++..+. .|+++|.++.+. +.+.++ + + .+.+...|... ++....+||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 6899999999999999998853 489999999764 333321 1 2 35566666554 342234799
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCe
Q 017377 283 MVHCAQCGIIWDKKEGIFLIEADRLLKPGG 312 (372)
Q Consensus 283 lV~~~~~~~~~~~~~~~~L~el~rvLkPGG 312 (372)
+|++.-.+ +... ...++++..++|++.+
T Consensus 167 vV~lDP~y-~~~~-~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPMF-PHKQ-KSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCCC-CCCC-C-----HHHHHHHHHS
T ss_pred EEEEcCCC-CCcc-cchHHHHHHHHHHHhh
Confidence 99997553 3322 2246667777777755
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.3e-05 Score=71.63 Aligned_cols=101 Identities=14% Similarity=0.049 Sum_probs=61.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhc-------CCc----eeEEEEeeCCH---HHHHHH-----------HHc--C-------
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSL-------KLM----AVCVAVYEATG---SQVQLA-----------LER--G------- 261 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~-------~~~----~~~v~gvD~s~---~~v~~A-----------~~r--g------- 261 (372)
...+|||||+|+|..+..++.. ++. ...++++|..+ .+++.| ++. .
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999988776543 332 36789999776 444432 221 0
Q ss_pred ----------CCeEEEEeeccC-CCCC-C---CCccEEEecccccccccc--HHHHHHHHHhcccCCeEEEE
Q 017377 262 ----------LPAMIGNFISRQ-LPYP-S---LSFDMVHCAQCGIIWDKK--EGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 262 ----------l~~~~~~~d~~~-lp~~-~---~sFDlV~~~~~~~~~~~~--~~~~L~el~rvLkPGG~lvi 316 (372)
..+.+...|+.+ ++.. + ..||+|+.-...-.-.++ ...+|.++.++|+|||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 112344445433 3322 2 279999985211110111 23589999999999999885
|
| >3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.7e-06 Score=72.38 Aligned_cols=63 Identities=14% Similarity=-0.071 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 25 CFLSIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.+.=||.++|++..|+=|||+.|++. ..|..||||.|++.|+.+|..|..|..-|. ++++..
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~---sL~eIk 80 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGM---PIQKIK 80 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 456678999999999999999999996 677889999999999999999999988777 555544
|
| >2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.7e-06 Score=67.62 Aligned_cols=54 Identities=13% Similarity=-0.055 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcccccccceeccCCCCc-cccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPD-IYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|++..|+-||++.|++...+ ..||||.|++.|+.++..|..+..-|.
T Consensus 5 ~e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 59 (108)
T 2vz4_A 5 GQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGF 59 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 347889999999999999999998765 789999999999999999999877777
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00021 Score=69.38 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=81.2
Q ss_pred HHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-------CeEEEE
Q 017377 200 IAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-------PAMIGN 268 (372)
Q Consensus 200 l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-------~~~~~~ 268 (372)
....+...++ .+|||+.+|.|.=+..|++.+. ...|++.|+++.-++..+++ ++ ++.+..
T Consensus 140 ~~~~L~~~pg--------~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~ 210 (359)
T 4fzv_A 140 PVLALGLQPG--------DIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTS 210 (359)
T ss_dssp HHHHHCCCTT--------EEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEEC
T ss_pred HHHHhCCCCC--------CEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEe
Confidence 4445566666 7999999999999999988753 35689999999887655542 22 455666
Q ss_pred eeccCCC-CCCCCccEEEe----cc---ccc--------ccccc--------HHHHHHHHHhcccCCeEEEEEeCCCCCC
Q 017377 269 FISRQLP-YPSLSFDMVHC----AQ---CGI--------IWDKK--------EGIFLIEADRLLKPGGYFVLTSPESKPR 324 (372)
Q Consensus 269 ~d~~~lp-~~~~sFDlV~~----~~---~~~--------~~~~~--------~~~~L~el~rvLkPGG~lvis~p~~~~~ 324 (372)
.|...++ ...+.||.|++ +. ... .+... ...+|....+.|||||+++.++......
T Consensus 211 ~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 211 WDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290 (359)
T ss_dssp CCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred CchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence 6665543 34678999996 32 111 11111 1257888999999999999999877664
Q ss_pred C
Q 017377 325 G 325 (372)
Q Consensus 325 ~ 325 (372)
+
T Consensus 291 E 291 (359)
T 4fzv_A 291 Q 291 (359)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.8e-06 Score=69.72 Aligned_cols=54 Identities=22% Similarity=0.087 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcccccccceeccCCCC-ccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|++..|+=|||+.|++... |..||||.|++.|+.++..|..+..-|.
T Consensus 4 ~e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 58 (135)
T 1q06_A 4 SDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCC
Confidence 34788999999999999999999875 7889999999999999999998877777
|
| >2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.4e-06 Score=72.32 Aligned_cols=56 Identities=11% Similarity=-0.124 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.+.=+|.++|++..|+=|||+.|++...|..||||.|++.|+.+|..|..+..-|.
T Consensus 13 ~i~e~A~~~gvs~~TLR~ye~~Gll~p~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 68 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGI 68 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTSSCCEECTTSCEEBCTTHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCcccCCCCCEEeCHHHHHHHHHHHHHHHCCC
Confidence 34568899999999999999999999888899999999999999999998877677
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00022 Score=66.94 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=63.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH---HcCCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL---ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~---~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||+||++|.|+..++++. ....+.|+|+...+..... ..+.+.....-++....++.+.+|+|+|..+ .+-.
T Consensus 83 ~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A-PnsG 160 (300)
T 3eld_A 83 GRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG-ESSS 160 (300)
T ss_dssp EEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CCCS
T ss_pred CEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc-CCCC
Confidence 799999999999999999863 3456889998754211100 0011222222122223455688999999643 3311
Q ss_pred ----ccH--HHHHHHHHhcccCC-eEEEEEeCC
Q 017377 295 ----KKE--GIFLIEADRLLKPG-GYFVLTSPE 320 (372)
Q Consensus 295 ----~~~--~~~L~el~rvLkPG-G~lvis~p~ 320 (372)
+.. ..+|.-+.++|+|| |.|++-...
T Consensus 161 ~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 161 NPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 111 13466668899999 999998764
|
| >2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.8e-06 Score=63.91 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccccccccee-ccCCCCccc-cchhhhhHHHhHHHHhhcccc-CCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFV-TSSSKPDIY-SSYRRLKEQAAVDYLELRTLS-LGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~-~g~~ 81 (372)
+.=+|.++|++..|+=|||+. |++...|.. ||||+|++.|+.+|..|..|. .-|.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~ 65 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGL 65 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHCcCHHHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCC
Confidence 345788999999999999985 999888888 999999999999999999987 5556
|
| >1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A | Back alignment and structure |
|---|
Probab=97.58 E-value=6.2e-06 Score=66.38 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcccccccceeccCCCCc-cccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPD-IYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|+|..|+=||++.|++...+ ..||||.|++.|+.++..|..+..-|.
T Consensus 6 ~e~A~~~gvs~~tLR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~ 60 (109)
T 1r8d_A 6 KQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGF 60 (109)
T ss_dssp HHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCC
Confidence 447889999999999999999998766 689999999999999999998877666
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.001 Score=62.33 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=83.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhc----CCceeEEEEeeCCHH--------------------------HHHHHHH----cCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGS--------------------------QVQLALE----RGL 262 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~----~~~~~~v~gvD~s~~--------------------------~v~~A~~----rgl 262 (372)
+..|||+|+..|..+..++.. +.....|+++|..+. .++.+++ .|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 368999999999988887643 112355777885311 1233333 354
Q ss_pred ---CeEEEEeecc-CCC-CCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHH
Q 017377 263 ---PAMIGNFISR-QLP-YPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLK 337 (372)
Q Consensus 263 ---~~~~~~~d~~-~lp-~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~ 337 (372)
.+.+..+++. .+| +++++||+|+.-.. ........|..+.+.|+|||++++.+... + ...-.
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~~~-~---------~G~~~ 253 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDYMM-C---------PPCKD 253 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSCTT-C---------HHHHH
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCCCC-C---------HHHHH
Confidence 2556555442 233 44678999998632 21333468999999999999999887621 1 12234
Q ss_pred HHHHHHHhcCeeEEee--ecceEEEEec
Q 017377 338 VMEEFTEKICWSLIAQ--QDETFIWQKT 363 (372)
Q Consensus 338 ~i~~l~~~lcw~~~~~--~~~~~iw~K~ 363 (372)
.+.+|.+..+++.... ....+.|+|+
T Consensus 254 Av~Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 254 AVDEYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred HHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence 5566666666554443 3456788885
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=62.06 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=54.1
Q ss_pred CeEEEeCCCCc-HHHHHHHh-cCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCC--CCccEEEeccccccc
Q 017377 218 QSVLDVGCGFG-SFGAHLVS-LKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPS--LSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G-~~~~~L~~-~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~--~sFDlV~~~~~~~~~ 293 (372)
.+|||||||.| ..+..|++ .+ ..|+++|+++..++ +...|..+ |..+ +.||+|.+.+.
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~----------~v~dDiF~-P~~~~Y~~~DLIYsirP---- 98 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG----------IVRDDITS-PRMEIYRGAALIYSIRP---- 98 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT----------EECCCSSS-CCHHHHTTEEEEEEESC----
T ss_pred CcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc----------eEEccCCC-CcccccCCcCEEEEcCC----
Confidence 68999999999 59999997 55 45899999987665 33334433 3322 47999988654
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.+....+.++.+-. |.-++|...
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 333344555555543 455666544
|
| >2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.41 E-value=1.6e-05 Score=72.20 Aligned_cols=60 Identities=7% Similarity=-0.081 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCC-CCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLG-TTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~c~ 90 (372)
.=+|.++|++..|+=|||+.|++.. .|..||||.|++.++.+|..|..++.- |. ++++-.
T Consensus 4 gevA~~~Gvs~~TLRyYE~~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~---sL~eIk 65 (222)
T 2dg6_A 4 ADLSKRSGVSTATIKYYLREGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKV---PVATAR 65 (222)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTSSCCC---------CCHHHHHHHHHHHHHHHTTCC---CHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCC---CHHHHH
Confidence 3478899999999999999999986 678899999999999999999999875 77 455444
|
| >3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.34 E-value=1.7e-05 Score=73.21 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCc-cccchhhhhHHHhHHHHhhccccCCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPD-IYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.=||.++|+|..|+=|||++|++...| ..||||.|++.|+.+|..|..|..-|.
T Consensus 6 I~evA~~~gvs~~TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~ 61 (249)
T 3qao_A 6 IKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDF 61 (249)
T ss_dssp HHHHHHHHCCCHHHHHHHHHTTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCC
Confidence 3457899999999999999999998877 789999999999999999999887777
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00059 Score=66.44 Aligned_cols=102 Identities=17% Similarity=0.071 Sum_probs=69.4
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-------------eEEEEeeccCC----CCCC
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-------------AMIGNFISRQL----PYPS 278 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-------------~~~~~~d~~~l----p~~~ 278 (372)
.+++||=||.|.|..+..+++... ..++.+|+++..++.|++.-.. +.+...|+... +-..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 357999999999999999998753 5688999999999999875211 23333333211 1124
Q ss_pred CCccEEEeccccccccc-----c----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 279 LSFDMVHCAQCGIIWDK-----K----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 279 ~sFDlV~~~~~~~~~~~-----~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.||+|+.-..-..... . ...+++.++++|+|||.++....
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 67999997521111001 1 13578889999999999998643
|
| >1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=4.5e-05 Score=70.96 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCc--cccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPD--IYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
+.=+|.++|+|..|+-|||+.|++...+ -.||||.|++.++.+|..|..|..-|. ++++-..
T Consensus 8 i~e~a~~~gvs~~tlr~y~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~---~l~~i~~ 71 (278)
T 1r8e_A 8 IGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGT---PLEEMKK 71 (278)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTC---CHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3457899999999999999999998766 479999999999999999999987777 5555443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0019 Score=60.32 Aligned_cols=82 Identities=10% Similarity=-0.030 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--CeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--PAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~~~~~~~d~ 271 (372)
.-+.+.+.+.+...++ ..++|.+||.|..+..++++ ...++|+|.++.+++.|++ -- .+.+...+.
T Consensus 8 pVLl~e~le~L~~~~g--------g~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f 75 (285)
T 1wg8_A 8 PVLYQEALDLLAVRPG--------GVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNF 75 (285)
T ss_dssp CTTHHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCG
T ss_pred hHHHHHHHHhhCCCCC--------CEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCc
Confidence 3456677777777665 78999999999999999997 3579999999999999987 21 355555554
Q ss_pred cCCC-----CCCCCccEEEec
Q 017377 272 RQLP-----YPSLSFDMVHCA 287 (372)
Q Consensus 272 ~~lp-----~~~~sFDlV~~~ 287 (372)
..++ ...++||.|++.
T Consensus 76 ~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 76 RHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp GGHHHHHHHTTCSCEEEEEEE
T ss_pred chHHHHHHHcCCCCcCEEEeC
Confidence 4442 122578888874
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0043 Score=63.19 Aligned_cols=126 Identities=22% Similarity=0.189 Sum_probs=80.7
Q ss_pred CcccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc----CC--------ceeEEEEeeCCHHH
Q 017377 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL----KL--------MAVCVAVYEATGSQ 253 (372)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~----~~--------~~~~v~gvD~s~~~ 253 (372)
++.+|.- ...++.|.+.+....+ .+|+|-.||+|.|...+.+. .. ....+.|.|+++.+
T Consensus 196 ~GqfyTP-~~Vv~lmv~l~~p~~~--------~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~ 266 (530)
T 3ufb_A 196 SGEFYTP-RPVVRFMVEVMDPQLG--------ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLP 266 (530)
T ss_dssp CCCCCCC-HHHHHHHHHHHCCCTT--------CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHH
T ss_pred CceECCc-HHHHHHHHHhhccCCC--------CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHH
Confidence 3445532 3456777777765554 68999999999998766542 11 12458999999999
Q ss_pred HHHHHHc----CCC-eEEEEeeccCCCC----CCCCccEEEeccccc-cc-------------cccH-HHHHHHHHhccc
Q 017377 254 VQLALER----GLP-AMIGNFISRQLPY----PSLSFDMVHCAQCGI-IW-------------DKKE-GIFLIEADRLLK 309 (372)
Q Consensus 254 v~~A~~r----gl~-~~~~~~d~~~lp~----~~~sFDlV~~~~~~~-~~-------------~~~~-~~~L~el~rvLk 309 (372)
...|+.+ |+. ..+...|+-..|+ +...||+|+++--+- .+ ..+. ..++..+.+.||
T Consensus 267 ~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk 346 (530)
T 3ufb_A 267 YLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLK 346 (530)
T ss_dssp HHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhh
Confidence 9888754 554 3344445444332 235799999982211 00 0111 235667777776
Q ss_pred -------CCeEEEEEeCC
Q 017377 310 -------PGGYFVLTSPE 320 (372)
Q Consensus 310 -------PGG~lvis~p~ 320 (372)
|||++.+..|.
T Consensus 347 ~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 347 RPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp CTTSSSSSCCEEEEEEEH
T ss_pred hhhhccCCCceEEEEecc
Confidence 79999999884
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.007 Score=56.65 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=63.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH---HHHcCCC-eEEEEe-eccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL---ALERGLP-AMIGNF-ISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~---A~~rgl~-~~~~~~-d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+||++|.|+.+.+.+. .+..|.|+|+...--+. .++.+.+ +.+... |...++ ...+|+|+|--. ..
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~--~~~~D~ivcDig-eS 171 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRP--SECCDTLLCDIG-ES 171 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSC--CCCCSEEEECCC-CC
T ss_pred CEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCC--CCCCCEEEEECc-cC
Confidence 699999999999999888774 33579999997651100 0011111 333332 444444 366999999643 22
Q ss_pred ccccH----H---HHHHHHHhcccCC-eEEEEEeCCCCC
Q 017377 293 WDKKE----G---IFLIEADRLLKPG-GYFVLTSPESKP 323 (372)
Q Consensus 293 ~~~~~----~---~~L~el~rvLkPG-G~lvis~p~~~~ 323 (372)
- .++ . .+|.-+.+.|++| |-|++-...+..
T Consensus 172 s-~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~ 209 (321)
T 3lkz_A 172 S-SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM 209 (321)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS
T ss_pred C-CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC
Confidence 2 221 1 2566667889999 899987765533
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0019 Score=60.70 Aligned_cols=54 Identities=22% Similarity=0.131 Sum_probs=43.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+.+.+.+... .++ ..|||++||+|+++..++..+ ..++|+|+++.+++.|+++
T Consensus 223 ~l~~~~i~~~~-~~~--------~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 223 ELAERLVRMFS-FVG--------DVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKER 276 (297)
T ss_dssp HHHHHHHHHHC-CTT--------CEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCC--------CEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence 45556665554 333 689999999999999988876 4589999999999998876
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=58.76 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=56.1
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCc--eeEEEEeeC--CHHHHHHHHHcCCCeE-EEEe-eccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLM--AVCVAVYEA--TGSQVQLALERGLPAM-IGNF-ISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~--~~~v~gvD~--s~~~v~~A~~rgl~~~-~~~~-d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+||+.|.++.++++. ++. ...+.++|. .+... ...|+++. +... |...+ +...+|+|+|--.-
T Consensus 75 ~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~---~~~Gv~~i~~~~G~Df~~~--~~~~~DvVLSDMAP 149 (269)
T 2px2_A 75 GKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM---QSYGWNIVTMKSGVDVFYK--PSEISDTLLCDIGE 149 (269)
T ss_dssp EEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC---CSTTGGGEEEECSCCGGGS--CCCCCSEEEECCCC
T ss_pred CEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc---cCCCceEEEeeccCCccCC--CCCCCCEEEeCCCC
Confidence 79999999999999999886 121 123444552 11000 00122322 2223 54443 35689999995321
Q ss_pred c--ccc-ccHH--HHHHHHHhcccCCe-EEEEEeCC
Q 017377 291 I--IWD-KKEG--IFLIEADRLLKPGG-YFVLTSPE 320 (372)
Q Consensus 291 ~--~~~-~~~~--~~L~el~rvLkPGG-~lvis~p~ 320 (372)
- +.. +... .+|.-+.++|+||| .|++-...
T Consensus 150 nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 150 SSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 1 111 1111 24655678999999 99988775
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00036 Score=82.98 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=50.1
Q ss_pred CeEEEeCCCCcHHHHHHHhc-C---CceeEEEEeeCCHHHHHHHHHc--CCCeEEEEeeccC-CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-K---LMAVCVAVYEATGSQVQLALER--GLPAMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~---~~~~~v~gvD~s~~~v~~A~~r--gl~~~~~~~d~~~-lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||.|+|..+..+.+. + ....+++..|+|+...+.|+++ .+++....++... .++..++||+|+++.++
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~vl 1321 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCAL 1321 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC-
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcccc
Confidence 58999999999876665543 1 1134677789998777666554 1223332223322 24556789999998774
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|-..+....|.+++++|||||++++...
T Consensus 1322 -~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1322 -ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp --------------------CCEEEEEEC
T ss_pred -cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 5556777799999999999999998764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0073 Score=54.85 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=63.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH---HHHcCCC-eEEEEe-eccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL---ALERGLP-AMIGNF-ISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~---A~~rgl~-~~~~~~-d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+||++|.|+.+.+.+. .+..|.++|+...--+. .+..|.+ +.+... |...++ ...+|.|+|--. .
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDIg-e- 154 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDIG-E- 154 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECCC-C-
T ss_pred CEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEecC-C-
Confidence 699999999999999888774 33579999997643210 1112333 445544 544443 367999999643 2
Q ss_pred ccccH----H---HHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WDKKE----G---IFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~~~~----~---~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
-..++ . .+|.-+.+.|++ |-|++-...+.
T Consensus 155 Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 155 SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 22221 1 356666788998 78888766543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.043 Score=50.29 Aligned_cols=54 Identities=19% Similarity=0.067 Sum_probs=42.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
...+.+.+... .++ ..|||..||+|+++....+.+ ..++|+|+++..++.|++|
T Consensus 200 ~l~~~~i~~~~-~~~--------~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r 253 (260)
T 1g60_A 200 DLIERIIRASS-NPN--------DLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFV 253 (260)
T ss_dssp HHHHHHHHHHC-CTT--------CEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCC--------CEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence 45555555543 333 689999999999999988876 4588999999999998876
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.11 Score=49.73 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=52.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~ 287 (372)
.+|+|+-||.|.++..+...|.....+.++|+++.+++..+.+.....+...|...+. ++...+|+|+..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 5799999999999999988875445688999999999998887555444455665553 111268999986
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.052 Score=50.83 Aligned_cols=96 Identities=9% Similarity=-0.027 Sum_probs=57.7
Q ss_pred CCeEEEeCC------CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccc-
Q 017377 217 VQSVLDVGC------GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQC- 289 (372)
Q Consensus 217 ~~~VLDIGC------G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~- 289 (372)
..+|||+|+ .+|++ .+...+.....++++|+.+-. ...+ .+...|..... ..+.||+|++--.
T Consensus 110 gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~------sda~-~~IqGD~~~~~-~~~k~DLVISDMAP 179 (344)
T 3r24_A 110 NMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV------SDAD-STLIGDCATVH-TANKWDLIISDMYD 179 (344)
T ss_dssp TCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB------CSSS-EEEESCGGGEE-ESSCEEEEEECCCC
T ss_pred CCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc------cCCC-eEEEccccccc-cCCCCCEEEecCCC
Confidence 479999996 77884 333334333468889986532 1122 33555544332 2478999998411
Q ss_pred ---ccccccc------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 290 ---GIIWDKK------EGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 290 ---~~~~~~~------~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
-+.-.+. -+.++.=+.++|+|||.|++-.....
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 221 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence 0100011 23466667889999999999877443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.054 Score=50.61 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=52.6
Q ss_pred EEEEeeccC-CC-CCCCCccEEEecccccc-------------------ccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 265 MIGNFISRQ-LP-YPSLSFDMVHCAQCGII-------------------WDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 265 ~~~~~d~~~-lp-~~~~sFDlV~~~~~~~~-------------------~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+.+.|... ++ +++++||+|+++--... +......++.++.|+|+|||.+++.......
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~ 102 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAV 102 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEE
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 344455443 22 46789999999722111 0011234678999999999999988653210
Q ss_pred -CCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 324 -RGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 324 -~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
....-..........+..+.+..+|... +.+||.|+.
T Consensus 103 ~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~----~~iiW~K~~ 140 (297)
T 2zig_A 103 ARRRFGRHLVFPLHADIQVRCRKLGFDNL----NPIIWHKHT 140 (297)
T ss_dssp ECC----EEEECHHHHHHHHHHHTTCEEE----EEEEEECC-
T ss_pred ccccCCcccccccHHHHHHHHHHcCCeee----ccEEEeCCC
Confidence 0000000001123445556677788765 356899874
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.05 Score=52.27 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=64.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||-+|+|. |.++..+++. +. ..|+++|.++...+.+++.|....+. ....++ ...++.||+|+-.-.
T Consensus 192 ~~VlV~GaG~vG~~a~qlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~-~~~~~~~~~~~~~~~gg~D~vid~~g- 267 (371)
T 1f8f_A 192 SSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFALESTG- 267 (371)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEEEECSC-
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCCEEec-CCccCHHHHHHHhcCCCCcEEEECCC-
Confidence 7899999986 7788888775 32 25788999999999999888764432 111110 011236999986532
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+.+..+.|+|||.+++....
T Consensus 268 -----~-~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 -----S-PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp -----C-HHHHHHHHHTEEEEEEEEECCCC
T ss_pred -----C-HHHHHHHHHHHhcCCEEEEeCCC
Confidence 1 13678889999999999987643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.17 Score=48.98 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=65.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-C------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-P------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-p------~~~~sFDlV~~~~ 288 (372)
.+||-+|+|. |.++..+++. ... .|+++|.++..++.+++.|.. ..+....+. . .....||+|+-.-
T Consensus 187 ~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~lGa~--~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 262 (398)
T 2dph_A 187 SHVYIAGAGPVGRCAAAGARL--LGAACVIVGDQNPERLKLLSDAGFE--TIDLRNSAPLRDQIDQILGKPEVDCGVDAV 262 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHHTTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcCCc--EEcCCCcchHHHHHHHHhCCCCCCEEEECC
Confidence 7899999986 8888888875 223 688899999999999887763 332211111 0 0123699998653
Q ss_pred ccccc-------cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIW-------DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~-------~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..... ..++...+.+..++|+|||.+++....
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 263 GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred CCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 31110 001223688899999999999876543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.12 Score=49.00 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=49.7
Q ss_pred CCCCCccEEEecccc--c-----------cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHH
Q 017377 276 YPSLSFDMVHCAQCG--I-----------IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEF 342 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~--~-----------~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l 342 (372)
+++++||+|++.--. . .|.......|.++.|+|+|||.+++.......... +. .....+..+.+.
T Consensus 29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~-~~-~~~~~~~~i~~~ 106 (323)
T 1boo_A 29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV-PA-RSIYNFRVLIRM 106 (323)
T ss_dssp SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE-EE-ECCHHHHHHHHH
T ss_pred CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC-cc-cccchHHHHHHH
Confidence 457889999886211 0 11123446889999999999999998653311000 00 001234445555
Q ss_pred HHhcCeeEEeeecceEEEEecC
Q 017377 343 TEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 343 ~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
.+..+|.+. +.++|+|+.
T Consensus 107 ~~~~Gf~~~----~~iiW~k~~ 124 (323)
T 1boo_A 107 IDEVGFFLA----EDFYWFNPS 124 (323)
T ss_dssp HHTTCCEEE----EEEEEECSS
T ss_pred HHhCCCEEE----EEEEEecCC
Confidence 577888765 456998875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.088 Score=45.53 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=59.3
Q ss_pred CeEEEeCC--CCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEe
Q 017377 218 QSVLDVGC--GFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~ 286 (372)
++||.+|+ |.|.....++.. | ..++++|.++...+.+++.+....+ +..... ...+.+|+|+.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~D~vi~ 113 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSDAKREMLSRLGVEYVG---DSRSVDFADEILELTDGYGVDVVLN 113 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHTTCCSEEE---ETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CEEEEeeCCChHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHcCCCEEe---eCCcHHHHHHHHHHhCCCCCeEEEE
Confidence 78999995 456666666554 4 4578889999988888776654322 221111 12246999997
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.. . ..+.+..+.|+|||.+++...
T Consensus 114 ~~g-----~---~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 114 SLA-----G---EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp CCC-----T---HHHHHHHHTEEEEEEEEECSC
T ss_pred CCc-----h---HHHHHHHHHhccCCEEEEEcC
Confidence 532 1 267888999999999998754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.21 Score=47.60 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=63.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEee---ccC----C-CCCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFI---SRQ----L-PYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d---~~~----l-p~~~~sFDlV~~~ 287 (372)
.+||-+|+|. |.++..+++.. .. .|+++|.++...+.+++.|....+. .+ ..+ + ....+.||+|+-.
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~-~~~~~~~~~~~~i~~~~~~g~D~vid~ 249 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKEIGADLVLQ-ISKESPQEIARKVEGQLGCKPEVTIEC 249 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTTCSEEEE-CSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEEc-CcccccchHHHHHHHHhCCCCCEEEEC
Confidence 7899999875 77788887752 23 6888999999999999888764332 11 000 0 0001469999865
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. . ...+.+..++|+|||.+++...
T Consensus 250 ~g------~-~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 250 TG------A-EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp SC------C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CC------C-hHHHHHHHHHhcCCCEEEEEec
Confidence 32 1 1257788899999999998764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.12 Score=49.66 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~ 271 (372)
....+.|.+.+....+ +.......|||||.|.|.+|..|++... ...++++|+++.++...++.. -+..+...|+
T Consensus 38 ~~i~~~Iv~~~~l~~~--~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~ 114 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKT--YKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHHHHCGGGT--CCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHhccCCcc--cCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhccCCCEEEEECCc
Confidence 4567788888765321 0000126899999999999999997521 235889999999988776642 2345555554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.16 Score=48.24 Aligned_cols=90 Identities=20% Similarity=0.144 Sum_probs=64.4
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=+|+|. |.++..+++.. ...++++|.++...+.+++.|....+ .+...+ . ..+|+|+-.-...
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~v~--~~~~~~--~-~~~D~vid~~g~~----- 245 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALSMGVKHFY--TDPKQC--K-EELDFIISTIPTH----- 245 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHHTTCSEEE--SSGGGC--C-SCEEEEEECCCSC-----
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcCCCeec--CCHHHH--h-cCCCEEEECCCcH-----
Confidence 7899999875 77777777752 24688899999999999998877655 222222 2 2799998653211
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+....+.|+|||.+++.....
T Consensus 246 --~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 246 --YDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp --CCHHHHHTTEEEEEEEEECCCCC
T ss_pred --HHHHHHHHHHhcCCEEEEECCCC
Confidence 14667889999999999876543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.59 Score=44.73 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=64.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC--------CCCCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ--------LPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~--------lp~~~~sFDlV~~~ 287 (372)
.+||=+|+|. |.++..+++. |. ..|+++|.++...+.+++.|....+. ....+ .....+.||+|+-.
T Consensus 184 ~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~-~~~~~~~~~i~~~~~~~~gg~Dvvid~ 260 (370)
T 4ej6_A 184 STVAILGGGVIGLLTVQLARLAGA--TTVILSTRQATKRRLAEEVGATATVD-PSAGDVVEAIAGPVGLVPGGVDVVIEC 260 (370)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHTCSEEEC-TTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCCEEEC-CCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence 7888899875 7777777775 32 26788999999999999988765432 11111 00223479999865
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
-. . ...+.+..+.|++||.+++.....
T Consensus 261 ~G------~-~~~~~~~~~~l~~~G~vv~~G~~~ 287 (370)
T 4ej6_A 261 AG------V-AETVKQSTRLAKAGGTVVILGVLP 287 (370)
T ss_dssp SC------C-HHHHHHHHHHEEEEEEEEECSCCC
T ss_pred CC------C-HHHHHHHHHHhccCCEEEEEeccC
Confidence 22 1 236788899999999999876543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.49 Score=44.82 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=62.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCCC------CC---CCCccEEEe
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQLP------YP---SLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~lp------~~---~~sFDlV~~ 286 (372)
.+||-+|+|. |.++..+++.. ...|+++|.++...+.+++.|....+. ... .+.. .. .+.+|+|+-
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~~~~-~~~~~~~~~~i~~~~~~~~g~g~D~vid 246 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLV-VDPAKEEESSIIERIRSAIGDLPNVTID 246 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEE-CCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEc-CcccccHHHHHHHHhccccCCCCCEEEE
Confidence 7899999874 77777777652 234788999999999999888764332 211 1110 11 246999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.-. . ...+....++|+|||.+++...
T Consensus 247 ~~g------~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 247 CSG------N-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CSC------C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC------C-HHHHHHHHHHHhcCCEEEEEec
Confidence 532 1 1257788899999999998764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.52 Score=44.71 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=73.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEE-EEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCV-AVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v-~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~~~~~~~ 293 (372)
.+++|+-||.|.++..+...|+....+ .++|+++..++..+.+.... ....|...+. ++...+|+++...--..+
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 589999999999999998887533446 78999999998777663222 2334555443 222368999965221222
Q ss_pred ----------cccH-HHHHHHHHh-cc-----cCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 294 ----------DKKE-GIFLIEADR-LL-----KPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 294 ----------~~~~-~~~L~el~r-vL-----kPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
..+. ..++.++.| ++ +|- +++......- .....++.+....+++++.+..
T Consensus 90 s~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~--~~~lENV~gl-------~~~~~~~~i~~~l~~~GY~v~~ 156 (327)
T 3qv2_A 90 NNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK--HIFIENVPLF-------KESLVFKEIYNILIKNQYYIKD 156 (327)
T ss_dssp SHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS--EEEEEECGGG-------GGSHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCCCCCCccccchhHHHHHHHHHHHhccCCC--EEEEEchhhh-------cChHHHHHHHHHHHhCCCEEEE
Confidence 1222 246667666 54 454 3333222211 1123466666656777776543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.24 Score=46.50 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=60.6
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CC-------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP-------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp-------~~~~sFDlV~~~ 287 (372)
++||-+|+ |.|..+..++... ...++++|.++..++.+++.|....+ |..+ -. ...+.+|+|+.+
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~d~vi~~ 221 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAF---NYKTVNSLEEALKKASPDGYDCYFDN 221 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEE---ETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcCCcEEE---ecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 78999998 5677776666642 24678889999998888776654332 2221 11 112479999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. . ..+.+..+.|+|||.+++...
T Consensus 222 ~g-----~---~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 222 VG-----G---EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp SC-----H---HHHHHHHTTEEEEEEEEECCC
T ss_pred CC-----h---HHHHHHHHHHhcCCEEEEEec
Confidence 43 1 247788899999999988654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.64 Score=44.18 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=51.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~ 287 (372)
-+++|+-||.|.+...+...|+....+.++|+++..++.-+.+.....+...|...+. ++...+|+++..
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEec
Confidence 4799999999999999988876445678999999999887776544434444555543 223368999864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.16 Score=48.76 Aligned_cols=90 Identities=21% Similarity=0.214 Sum_probs=61.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee---ccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d---~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+||-+|+|. |.++..+++.. ...|+++|.++..++.+++.|....+...+ ...+. +.+|+|+-.-...
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~g~~-- 268 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTVAAP-- 268 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECCSSC--
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECCCCH--
Confidence 7899999874 77777777652 245888999999999998888654432111 11121 5799998653311
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+.+..+.|+|||.+++...
T Consensus 269 -----~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 269 -----HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -----CCHHHHHTTEEEEEEEEECCC
T ss_pred -----HHHHHHHHHhccCCEEEEecc
Confidence 135677899999999987654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.75 Score=44.33 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=65.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CC------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp------~~~~sFDlV~~~~ 288 (372)
.+||-+|+|. |.++..+++. |. ..|+++|.++..++.+++.|.. ..+..... +. .....+|+|+-.-
T Consensus 187 ~~VlV~GaG~vG~~aiqlAk~~Ga--~~Vi~~~~~~~~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~ 262 (398)
T 1kol_A 187 STVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNPARLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCAVDAV 262 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHcCCc--EEccCCcchHHHHHHHHhCCCCCCEEEECC
Confidence 7899999875 7888888875 32 2578899999999999988874 22221111 00 1124699998653
Q ss_pred ccc---------cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGI---------IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~---------~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
... |. .++...+.+..++|++||.+++...
T Consensus 263 G~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 263 GFEARGHGHEGAKH-EAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp CTTCBCSSTTGGGS-BCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CCcccccccccccc-cchHHHHHHHHHHHhcCCEEEEecc
Confidence 321 11 2233478889999999999988754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.25 Score=47.17 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=64.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~~ 290 (372)
.+||=+|+|. |.++..+++. ....++++|.++..++.+++.|....+. .+..++. .....+|+|+-.-.
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~~~g~g~D~vid~~g- 266 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKA--TGAEVIVTSSSREKLDRAFALGADHGIN-RLEEDWVERVYALTGDRGADHILEIAG- 266 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHHTTCCEEEEEEETT-
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCEEEEEecCchhHHHHHHcCCCEEEc-CCcccHHHHHHHHhCCCCceEEEECCC-
Confidence 7899999875 7777777765 2346888999999999999888765443 1111110 12347999986533
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. ..+....+.|+|||.+++.....
T Consensus 267 ---~----~~~~~~~~~l~~~G~iv~~G~~~ 290 (363)
T 3uog_A 267 ---G----AGLGQSLKAVAPDGRISVIGVLE 290 (363)
T ss_dssp ---S----SCHHHHHHHEEEEEEEEEECCCS
T ss_pred ---h----HHHHHHHHHhhcCCEEEEEecCC
Confidence 1 14667788999999999886543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.34 Score=45.97 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=63.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----C-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p-~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|. |.++..+++.. .. .|+++|.++..++.+++.|....+. ....++ . .....||+|+-.-.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~t~g~g~D~v~d~~g 244 (352)
T 3fpc_A 168 DTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALEYGATDIIN-YKNGDIVEQILKATDGKGVDKVVIAGG 244 (352)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHHHTCCEEEC-GGGSCHHHHHHHHTTTCCEEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCceEEc-CCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 7899999875 77777777752 23 5788999999999999988764432 111111 0 12346999986532
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. + ..+.+..+.|+|||.+++....
T Consensus 245 ~----~---~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 245 D----V---HTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp C----T---THHHHHHHHEEEEEEEEECCCC
T ss_pred C----h---HHHHHHHHHHhcCCEEEEeccc
Confidence 1 1 2678888999999999987643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.41 Score=45.06 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=64.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC------CCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY------PSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~------~~~sFDlV~~~~~~ 290 (372)
.+||-+|+|. |.++..+++.. ...++++|.++...+.+++.|....+. .....+ ..+.+|+|+-...
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~~i~---~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARRLGAEVAVN---ARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEE---TTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCEEEe---CCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 7899899985 88888888762 346889999999999999988765432 221111 0136888875421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
....+....+.|+|||.+++....
T Consensus 242 ------~~~~~~~~~~~l~~~G~iv~~G~~ 265 (340)
T 3s2e_A 242 ------SPKAFSQAIGMVRRGGTIALNGLP 265 (340)
T ss_dssp ------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred ------CHHHHHHHHHHhccCCEEEEeCCC
Confidence 123678889999999999987643
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.43 Score=46.23 Aligned_cols=124 Identities=9% Similarity=-0.033 Sum_probs=77.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC--------CCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY--------PSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~--------~~~sFDlV~~~~~ 289 (372)
.+++|+-||.|.++..+...|+. .+.++|+++..++..+.+-....+...|...+.. ....+|+|+...-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~--~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFD--VKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCE--EEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCc--EEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 47999999999999999888853 4678999999998888775555555566655531 3467999997521
Q ss_pred cccc-------cccHH-HHHH---HHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeE
Q 017377 290 GIIW-------DKKEG-IFLI---EADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSL 350 (372)
Q Consensus 290 ~~~~-------~~~~~-~~L~---el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~ 350 (372)
-..+ .+++. .++. ++...++|--.++=.++..-. ......++.+. ..+++++.+
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s------~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQ------EKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTC------GGGHHHHHHHH-HHHHTTEEE
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhc------cCcHHHHHHHH-HHHcCCCcc
Confidence 1111 12222 3333 455557886444433343322 13334566666 457777776
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.3 Score=46.60 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~ 258 (372)
.-..+++.+.+...++ ..++|..||.|..+..+++.-.....++|+|.++.+++.|+
T Consensus 43 pVLl~Evl~~L~i~pg--------giyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 43 TVLLDEAVNGLNIRPD--------GIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CTTTHHHHHHTCCCTT--------CEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred cccHHHHHHhhCCCCC--------CEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3456677777776666 78999999999999999987334467999999999999884
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.44 Score=43.39 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
...|.++.++|+|||.+++... +.. ...+.......+|... +.++|+|+.
T Consensus 54 ~~~l~~~~~~Lk~~g~i~v~~~-----------d~~--~~~~~~~~~~~gf~~~----~~iiW~K~~ 103 (260)
T 1g60_A 54 YRWIDKVLDKLDKDGSLYIFNT-----------PFN--CAFICQYLVSKGMIFQ----NWITWDKRD 103 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC-----------HHH--HHHHHHHHHHTTCEEE----EEEEECCCC
T ss_pred HHHHHHHHHHhcCCeEEEEEcC-----------cHH--HHHHHHHHHhhcccee----EEEEEEecC
Confidence 4578889999999999998742 111 1223334455677554 457999875
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.84 Score=42.93 Aligned_cols=97 Identities=23% Similarity=0.200 Sum_probs=52.7
Q ss_pred CeEEEeCCCCcHHHHHHH----hcCC-ceeEEEEeeCC------------HHHHHHHHHc-----CCCe--EEEEeeccC
Q 017377 218 QSVLDVGCGFGSFGAHLV----SLKL-MAVCVAVYEAT------------GSQVQLALER-----GLPA--MIGNFISRQ 273 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~----~~~~-~~~~v~gvD~s------------~~~v~~A~~r-----gl~~--~~~~~d~~~ 273 (372)
-+|||+|-|+|....... +.+. ....++.+|.. ....+...++ +-.+ .+...|+..
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 579999999998643322 2222 23445666642 1112222222 1111 222333322
Q ss_pred -CC-CCCCCccEEEeccccccccccH----HHHHHHHHhcccCCeEEEE
Q 017377 274 -LP-YPSLSFDMVHCAQCGIIWDKKE----GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 274 -lp-~~~~sFDlV~~~~~~~~~~~~~----~~~L~el~rvLkPGG~lvi 316 (372)
++ +++..||+|+--. +-. ..+| ..++..|.++++|||.|+-
T Consensus 178 ~l~~l~~~~~Da~flDg-FsP-~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 178 RIKEVENFKADAVFHDA-FSP-YKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HGGGCCSCCEEEEEECC-SCT-TTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHhhhcccceeEEEeCC-CCc-ccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 22 3456799998753 111 1222 3699999999999998763
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.52 Score=44.36 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=61.2
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCCeEEEEeecc-CCC-----CCCCCccEEEecc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISR-QLP-----YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~~~~~~~d~~-~lp-----~~~~sFDlV~~~~ 288 (372)
.+||-+|+ |.|..+..++... ...++++|.++..++.++ +.|....+ +.... .+. ...+.+|+|+.+-
T Consensus 157 ~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (345)
T 2j3h_A 157 ETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTKFGFDDAF-NYKEESDLTAALKRCFPNGIDIYFENV 233 (345)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTSCCSEEE-ETTSCSCSHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHcCCceEE-ecCCHHHHHHHHHHHhCCCCcEEEECC
Confidence 78999997 5677777777652 246888999999998887 46654332 21110 110 0124699998763
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. . ..+....+.|++||.+++...
T Consensus 234 g-----~---~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 234 G-----G---KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp C-----H---HHHHHHHTTEEEEEEEEECCC
T ss_pred C-----H---HHHHHHHHHHhcCCEEEEEcc
Confidence 3 1 267888999999999998653
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.76 E-value=0.99 Score=42.46 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC------CCCccEEEecccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP------SLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~------~~sFDlV~~~~~~ 290 (372)
.+||-+|+| .|..+..+++.. ...++++|.++..++.+++.|....+ +.....+. .+.+|+|+-+-.
T Consensus 166 ~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~~~---d~~~~~~~~~~~~~~~~~d~vid~~g- 239 (339)
T 1rjw_A 166 EWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVV---NPLKEDAAKFMKEKVGGVHAAVVTAV- 239 (339)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEE---CTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHCCCCEEe---cCCCccHHHHHHHHhCCCCEEEECCC-
Confidence 789999986 477777777652 24688899999999999887765332 22211110 046899986532
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+.+..+.|++||.+++....
T Consensus 240 -----~-~~~~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 240 -----S-KPAFQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp -----C-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEeccc
Confidence 1 12677888999999999886543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.42 Score=44.87 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=61.9
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH-HHcCCCeEEEEeeccCCC-------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA-LERGLPAMIGNFISRQLP-------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A-~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~ 287 (372)
++||-+|+ |.|..+..++.. ....++++|.++...+.+ ++.|....+. ..... ...+.+|+|+.+
T Consensus 151 ~~vlI~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 151 ETVVISGAAGAVGSVAGQIARL--KGCRVVGIAGGAEKCRFLVEELGFDGAID---YKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp CEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCCSEEEE---TTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHcCCCEEEE---CCCHHHHHHHHHhcCCCceEEEEC
Confidence 78999998 567777777765 224688899999999888 6667654332 11111 113469999875
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. . ..+....+.|++||.+++...
T Consensus 226 ~g-----~---~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 226 VG-----G---EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp SC-----H---HHHHHHHTTEEEEEEEEECCC
T ss_pred CC-----c---chHHHHHHHHhhCCEEEEEee
Confidence 33 1 267888999999999998653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.37 Score=46.09 Aligned_cols=94 Identities=12% Similarity=-0.036 Sum_probs=62.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|. |.++..+++. +. ..|+++|.++...+.+++.|....+..-+. .++ ....+.+|+|+-.-.
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 7899999874 7777777765 32 157889999999999998887643321110 011 011237999986522
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p~ 320 (372)
. ...+.+..+.|++| |.+++....
T Consensus 271 ~-------~~~~~~~~~~l~~~~G~iv~~G~~ 295 (373)
T 1p0f_A 271 R-------IETMMNALQSTYCGSGVTVVLGLA 295 (373)
T ss_dssp C-------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred C-------HHHHHHHHHHHhcCCCEEEEEccC
Confidence 1 13678889999999 999987643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.29 Score=46.29 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=63.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee----ccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI----SRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d----~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+||-+|+|. |.++..+++.......|+++|.++...+.+++.|....+..-+ ...+. ....+|+|+-.-..
T Consensus 172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid~~g~-- 248 (344)
T 2h6e_A 172 PVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAIDLVGT-- 248 (344)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEESSCC--
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEECCCC--
Confidence 7899999874 6777777765200346889999999999999888654332111 00111 12369999875321
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+....++|+|||.+++...
T Consensus 249 -----~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 249 -----EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp -----HHHHHHHHHHEEEEEEEEECCC
T ss_pred -----hHHHHHHHHHhhcCCEEEEeCC
Confidence 1267788899999999998754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.33 Score=45.80 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred CeEEEeCCC--CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG--~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||-+|+| .|..+..+++. ....++++|.++..++.+++.|....+. ..... .....+|+|+.+
T Consensus 146 ~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~lga~~~~~---~~~~~~~~~~~~~~~~~g~Dvvid~ 220 (340)
T 3gms_A 146 DVLLVNACGSAIGHLFAQLSQI--LNFRLIAVTRNNKHTEELLRLGAAYVID---TSTAPLYETVMELTNGIGADAAIDS 220 (340)
T ss_dssp CEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEE---TTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhCCCcEEEe---CCcccHHHHHHHHhCCCCCcEEEEC
Confidence 789999987 57777777765 2246888899988889998888764432 21111 123479999875
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.. . .+.+..+.|+|||.+++....
T Consensus 221 ~g~------~--~~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 221 IGG------P--DGNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp SCH------H--HHHHHHHTEEEEEEEEECCCT
T ss_pred CCC------h--hHHHHHHHhcCCCEEEEEeec
Confidence 321 1 223445899999999987654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.37 Score=45.59 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=61.9
Q ss_pred CeEEEeCCC--CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCC-CCccEEEeccc
Q 017377 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPS-LSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG--~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~-~sFDlV~~~~~ 289 (372)
.+||-+|+| .|..+..++... ....++++|.++...+.+++.|....+. ...... .... +.+|+|+.+-.
T Consensus 172 ~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~g 249 (347)
T 1jvb_A 172 KTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVDAVIDLNN 249 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCCEEec-CCCccHHHHHHHHhcCCCceEEEECCC
Confidence 789999998 566666666541 0246888999999999888777654332 111110 0111 47999987633
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+.+..++|+|||.+++....
T Consensus 250 ~-------~~~~~~~~~~l~~~G~iv~~g~~ 273 (347)
T 1jvb_A 250 S-------EKTLSVYPKALAKQGKYVMVGLF 273 (347)
T ss_dssp C-------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred C-------HHHHHHHHHHHhcCCEEEEECCC
Confidence 1 12677788999999999886543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=0.34 Score=46.39 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=62.4
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC-------CCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLPY-------PSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~-------~~~sFDlV~~~~ 288 (372)
.+||-+|+|. |.++..+++.. .. .|+++|.++...+.+++.|....+. .......+ ..+.+|+|+-.-
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~~~~~~~~~~g~D~vid~~ 270 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVFGATDFVN-PNDHSEPISQVLSKMTNGGVDFSLECV 270 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCCEEEC-GGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhCCceEEe-ccccchhHHHHHHHHhCCCCCEEEECC
Confidence 7899999864 77777777652 23 5888999999999999888754332 11100111 123699998653
Q ss_pred ccccccccHHHHHHHHHhcccCC-eEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPG-GYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPG-G~lvis~p~ 320 (372)
.. ...+....+.|+|| |.+++....
T Consensus 271 g~-------~~~~~~~~~~l~~~~G~iv~~G~~ 296 (374)
T 1cdo_A 271 GN-------VGVMRNALESCLKGWGVSVLVGWT 296 (374)
T ss_dssp CC-------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred CC-------HHHHHHHHHHhhcCCcEEEEEcCC
Confidence 21 13678889999999 999987643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.14 E-value=0.41 Score=45.79 Aligned_cols=92 Identities=11% Similarity=0.001 Sum_probs=61.9
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeec--cCC-----CCCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFIS--RQL-----PYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~l-----p~~~~sFDlV~~~~ 288 (372)
.+||-+|+|. |.++..+++.. .. .|+++|.++...+.+++.|....+. ... ..+ ....+.+|+|+-.-
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~~~~~~~~~~g~D~vid~~ 269 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVGATECVN-PQDYKKPIQEVLTEMSNGGVDFSFEVI 269 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCSEEEC-GGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCCceEec-ccccchhHHHHHHHHhCCCCcEEEECC
Confidence 7899999874 67777777652 23 5888999999999998888754332 111 001 01124799998653
Q ss_pred ccccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. . ...+.+..+.|++| |.+++...
T Consensus 270 g------~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 270 G------R-LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp C------C-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred C------C-HHHHHHHHHHhhcCCcEEEEecc
Confidence 2 1 12677888999999 99998754
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=90.09 E-value=2.1 Score=40.57 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=61.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---C-----------------------CCeEEEEee
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G-----------------------LPAMIGNFI 270 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---g-----------------------l~~~~~~~d 270 (372)
...|+.+|||..+....|...+. ...+.-+|. +..++.-++. . -...+...|
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 36899999999999999887532 356777787 5555432221 0 123444444
Q ss_pred ccCCC--------C-CCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCC
Q 017377 271 SRQLP--------Y-PSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 271 ~~~lp--------~-~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..+.. . ......++++..++..+.++. ..+|..+.... |+|.+++.++.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 44321 1 335567888876666665433 35677777766 78887765543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.4 Score=45.77 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=62.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeec--cCC-----CCCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFIS--RQL-----PYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~l-----p~~~~sFDlV~~~~ 288 (372)
.+||-+|+|. |.++..+++. ... .|+++|.++...+.+++.|....+. ... ..+ ....+.+|+|+-.-
T Consensus 192 ~~VlV~GaG~vG~~avqla~~--~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~~~v~~~~~~g~D~vid~~ 268 (373)
T 2fzw_A 192 SVCAVFGLGGVGLAVIMGCKV--AGASRIIGVDINKDKFARAKEFGATECIN-PQDFSKPIQEVLIEMTDGGVDYSFECI 268 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHHHTCSEEEC-GGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCceEec-cccccccHHHHHHHHhCCCCCEEEECC
Confidence 7899999864 6777777765 223 5788999999999999888754332 111 000 01123799998653
Q ss_pred ccccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
.. ...+.+..+.|+|| |.+++...
T Consensus 269 g~-------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 269 GN-------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp CC-------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred Cc-------HHHHHHHHHhhccCCcEEEEEec
Confidence 21 12678889999999 99998764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.65 Score=43.80 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=62.6
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||-+|+ |.|..+..++... ...++++|.++..++.+++.|....+ +..... .....+|+|+.+
T Consensus 168 ~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~ga~~~~---d~~~~~~~~~~~~~~~~~~~d~vi~~ 242 (343)
T 2eih_A 168 DDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKALGADETV---NYTHPDWPKEVRRLTGGKGADKVVDH 242 (343)
T ss_dssp CEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHTCSEEE---ETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcCCCEEE---cCCcccHHHHHHHHhCCCCceEEEEC
Confidence 78999998 6788888887752 24688899999999988877765432 222111 123479999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. - ..+....+.|++||.+++...
T Consensus 243 ~g-~-------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 243 TG-A-------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp SC-S-------SSHHHHHHHEEEEEEEEESSC
T ss_pred CC-H-------HHHHHHHHhhccCCEEEEEec
Confidence 43 1 146677889999999988654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.48 E-value=0.48 Score=45.43 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=63.0
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee-ccCC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-SRQL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d-~~~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+| .|.++..+++. +. ..|+++|.++..++.+++.|....+...+ ...+ ...++.+|+|+-.-.
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTAGA--SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTC--SCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 688989987 37777777765 32 15788999999999999888765332110 0010 012347999986522
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p~ 320 (372)
. ...+....+.|++| |.+++....
T Consensus 273 ------~-~~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 273 ------N-VSVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp ------C-HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred ------C-HHHHHHHHHHhhccCCEEEEEccc
Confidence 1 13678889999997 999987653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.47 E-value=0.44 Score=45.07 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=61.4
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee-ccCCC-----CCCCCccEEEeccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-SRQLP-----YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d-~~~lp-----~~~~sFDlV~~~~~ 289 (372)
.+||-+|+ |.|..+..++... ...++++|.++...+.+++.|....+ +.. ...+. ..++.+|+|+.+..
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~D~vi~~~g 247 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRSIGGEVFI-DFTKEKDIVGAVLKATDGGAHGVINVSV 247 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHHTTCCEEE-ETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHHcCCceEE-ecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence 78999998 4677777777642 24678889888888888877765332 211 11110 01126999987633
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+....+.|++||.+++....
T Consensus 248 ~-------~~~~~~~~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 248 S-------EAAIEASTRYVRANGTTVLVGMP 271 (347)
T ss_dssp C-------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred c-------HHHHHHHHHHHhcCCEEEEEeCC
Confidence 1 13678889999999999887643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.46 E-value=2.1 Score=40.55 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=61.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeE-EEEeeCCHHHHHHHHHcCCCeEEEEeec---cCC------CCCCCCccEEEe
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFIS---RQL------PYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~-v~gvD~s~~~v~~A~~rgl~~~~~~~d~---~~l------p~~~~sFDlV~~ 286 (372)
.+||=+|+|. |.++..+++.. ... |+++|.++.-.+.+++.+-.+.....+. .++ -.....+|+|+-
T Consensus 181 ~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid 258 (363)
T 3m6i_A 181 DPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE 258 (363)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence 6788899875 77777777752 233 7788999999999988732222221110 000 012457999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.-. . ...+....++|++||.+++....
T Consensus 259 ~~g------~-~~~~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 259 CTG------V-ESSIAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp CSC------C-HHHHHHHHHHSCTTCEEEECCCC
T ss_pred CCC------C-hHHHHHHHHHhcCCCEEEEEccC
Confidence 522 1 12677888999999999987653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.56 Score=44.24 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=65.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~~ 290 (372)
.+||=+|+|. |.++..+++.- -...|+++|.++.-.+.+++.|....+.. + .+.. .....+|+|+-.-.
T Consensus 173 ~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~-~-~~~~~~v~~~t~g~g~d~v~d~~G- 248 (345)
T 3jv7_A 173 STAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALAREVGADAAVKS-G-AGAADAIRELTGGQGATAVFDFVG- 248 (345)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHHTTCSEEEEC-S-TTHHHHHHHHHGGGCEEEEEESSC-
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEEcC-C-CcHHHHHHHHhCCCCCeEEEECCC-
Confidence 7899999875 77777777651 13568899999999999999887654431 1 1100 01236899886522
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. ...+....+.|+|||.+++.....
T Consensus 249 -----~-~~~~~~~~~~l~~~G~iv~~G~~~ 273 (345)
T 3jv7_A 249 -----A-QSTIDTAQQVVAVDGHISVVGIHA 273 (345)
T ss_dssp -----C-HHHHHHHHHHEEEEEEEEECSCCT
T ss_pred -----C-HHHHHHHHHHHhcCCEEEEECCCC
Confidence 1 126788899999999999876543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=0.41 Score=45.84 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=62.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~ 288 (372)
.+||=+|+|. |.++..+++.. .. .|+++|.++...+.+++.|....+. .....-. ...+.+|+|+-.-
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~-~~~~~~~~~~~v~~~~~~g~Dvvid~~ 273 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKALGATDCLN-PRELDKPVQDVITELTAGGVDYSLDCA 273 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCSEEEC-GGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCCcEEEc-cccccchHHHHHHHHhCCCccEEEECC
Confidence 7899999874 77777777752 23 5888999999999998888754332 1110011 1123699998652
Q ss_pred ccccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. . ...+.+..+.|++| |.+++...
T Consensus 274 G------~-~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 274 G------T-AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp C------C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred C------C-HHHHHHHHHHhhcCCCEEEEECC
Confidence 2 1 13678889999999 99988654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.29 Score=45.63 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=58.7
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=+|+| .|.++..+++. ....+++++ ++...+.+++.|....+ + |...+ .+.+|+|+-.-..
T Consensus 144 ~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~-~~~~~~~~~~lGa~~v~-~-d~~~v---~~g~Dvv~d~~g~------ 209 (315)
T 3goh_A 144 REVLIVGFGAVNNLLTQMLNN--AGYVVDLVS-ASLSQALAAKRGVRHLY-R-EPSQV---TQKYFAIFDAVNS------ 209 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HTCEEEEEC-SSCCHHHHHHHTEEEEE-S-SGGGC---CSCEEEEECC---------
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCEEEEEE-ChhhHHHHHHcCCCEEE-c-CHHHh---CCCccEEEECCCc------
Confidence 789999996 47777888775 224688888 88888999888865444 2 23333 5679999864221
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+.+..+.|+|||.++....
T Consensus 210 --~~~~~~~~~l~~~G~~v~~g~ 230 (315)
T 3goh_A 210 --QNAAALVPSLKANGHIICIQD 230 (315)
T ss_dssp ------TTGGGEEEEEEEEEECC
T ss_pred --hhHHHHHHHhcCCCEEEEEeC
Confidence 123567899999999998743
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=0.73 Score=43.06 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=63.0
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||=+|+ |.|..+..+++. ....+++++.++..++.+++.|....+. ..... .....+|+|+.+
T Consensus 142 ~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~---~~~~~~~~~~~~~~~~~g~Dvvid~ 216 (325)
T 3jyn_A 142 EIILFHAAAGGVGSLACQWAKA--LGAKLIGTVSSPEKAAHAKALGAWETID---YSHEDVAKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp CEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEE---TTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CEEEEEcCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCCEEEe---CCCccHHHHHHHHhCCCCceEEEEC
Confidence 78999983 467777777765 2246888999999999999888654432 11111 123579999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.. ..+....+.|+|||.+++....
T Consensus 217 ~g~--------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 217 VGQ--------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp SCG--------GGHHHHHTTEEEEEEEEECCCT
T ss_pred CCh--------HHHHHHHHHhcCCCEEEEEecC
Confidence 331 1567788999999999987654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.14 E-value=0.31 Score=46.41 Aligned_cols=93 Identities=23% Similarity=0.258 Sum_probs=60.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc-CC--CCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR-QL--PYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~-~l--p~~~~sFDlV~~~~~~~~~ 293 (372)
.+||-+|+|. |.++..+++. ....|+++|.++..++.+++.|....+. .... +. ... +.||+|+..-...
T Consensus 181 ~~VlV~GaG~vG~~~~qlak~--~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~-~~~~~~~~~~~~-~~~D~vid~~g~~-- 254 (360)
T 1piw_A 181 KKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIA-TLEEGDWGEKYF-DTFDLIVVCASSL-- 254 (360)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEE-GGGTSCHHHHSC-SCEEEEEECCSCS--
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHcCCCEEEc-CcCchHHHHHhh-cCCCEEEECCCCC--
Confidence 7899999863 6777777765 2245888999988889998888654432 1111 10 011 4799998763320
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..++|+|||.+++...
T Consensus 255 -~--~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 255 -T--DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp -T--TCCTTTGGGGEEEEEEEEECCC
T ss_pred -c--HHHHHHHHHHhcCCCEEEEecC
Confidence 0 0134567789999999987654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=2.1 Score=40.59 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=63.2
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=+| .|.|..+..+++.. ...+++++.++...+.+++.|....+. .+...+ ....+.+|+|+.+-.
T Consensus 165 ~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~-~~~~~~~~~~~~~~~~g~D~vid~~g- 240 (362)
T 2c0c_A 165 KKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKSLGCDRPIN-YKTEPVGTVLKQEYPEGVDVVYESVG- 240 (362)
T ss_dssp CEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEE-TTTSCHHHHHHHHCTTCEEEEEECSC-
T ss_pred CEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCCcEEEe-cCChhHHHHHHHhcCCCCCEEEECCC-
Confidence 7899999 46788888888762 246888999999999998877654332 111110 011246999987633
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+..+.+.|++||.+++...
T Consensus 241 ----~---~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 241 ----G---AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp ----T---HHHHHHHHHEEEEEEEEECCC
T ss_pred ----H---HHHHHHHHHHhcCCEEEEEeC
Confidence 1 367788999999999988654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.97 E-value=0.84 Score=43.30 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=61.0
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||-+|+ |.|..+..++... ...+++++.++...+.+++.|....+ +..... .....+|+|+.+
T Consensus 172 ~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~ga~~~~---d~~~~~~~~~~~~~~~~~~~D~vi~~ 246 (351)
T 1yb5_A 172 ESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDIIIEM 246 (351)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHHcCCCEEE---eCCCchHHHHHHHHcCCCCcEEEEEC
Confidence 78999997 5677777776652 24688899999999988887765332 222111 123469999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. ...+.+..+.|+|||.+++...
T Consensus 247 ~G--------~~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 247 LA--------NVNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp CH--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CC--------hHHHHHHHHhccCCCEEEEEec
Confidence 33 1256778899999999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.96 E-value=1.3 Score=41.73 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCCccEEEecccc----------ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhc
Q 017377 277 PSLSFDMVHCAQCG----------IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKI 346 (372)
Q Consensus 277 ~~~sFDlV~~~~~~----------~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~l 346 (372)
++++||+|++.--. ..|.......|.++.++|+|||.+++.......... +. .....+.+.....
T Consensus 55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~----~~-~~l~~l~~~i~~~ 129 (319)
T 1eg2_A 55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA----GS-GDLISIISHMRQN 129 (319)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT----TB-CCHHHHHHHHHHH
T ss_pred ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccccc----cc-ccHHHHHHHHhCc
Confidence 45677777774110 111122345788899999999999998653221000 00 0012223333444
Q ss_pred C-eeEEeeecceEEEEecC
Q 017377 347 C-WSLIAQQDETFIWQKTV 364 (372)
Q Consensus 347 c-w~~~~~~~~~~iw~K~~ 364 (372)
+ |... ..+||+|+.
T Consensus 130 G~~~~~----~~IIW~K~~ 144 (319)
T 1eg2_A 130 SKMLLA----NLIIWNYPN 144 (319)
T ss_dssp CCCEEE----EEEEEECSC
T ss_pred ccceeE----EEEEEECCC
Confidence 5 6665 356898875
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.62 E-value=0.8 Score=42.72 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=60.2
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
++||-+| .|.|..+..++.. ....++++|.++...+.+++.+....+ +..+.. ...+.+|+|+.+
T Consensus 142 ~~vlV~Ga~ggiG~~~~~~a~~--~G~~V~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~D~vi~~ 216 (327)
T 1qor_A 142 EQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVI---NYREEDLVERLKEITGGKKVRVVYDS 216 (327)
T ss_dssp CEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEE---ECCCccHHHHHHHHhCCCCceEEEEC
Confidence 7899999 4566666666654 224678889999988888877765332 211111 123469999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. ...+....+.|++||.+++...
T Consensus 217 ~g--------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 217 VG--------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp SC--------GGGHHHHHHTEEEEEEEEECCC
T ss_pred Cc--------hHHHHHHHHHhcCCCEEEEEec
Confidence 33 1256788899999999988764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=87.20 E-value=0.83 Score=44.59 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=34.8
Q ss_pred CCCeEEEeCCCCcHHHHHHH-hcCCceeEEEEeeCCHHHHHHHHH
Q 017377 216 GVQSVLDVGCGFGSFGAHLV-SLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~-~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
...+|+|||++.|.++..++ ..+.....|+++|+++...+..++
T Consensus 226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~ 270 (409)
T 2py6_A 226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN 270 (409)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 44799999999999999888 444334679999999998876554
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=1 Score=42.12 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=62.1
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||=+|+ |.|..+..+++. ....+++++.++..++.+++.|....+. ..... .....+|+|+.+
T Consensus 150 ~~vlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~---~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 150 DYVLLFAAAGGVGLILNQLLKM--KGAHTIAVASTDEKLKIAKEYGAEYLIN---ASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSEEEE---TTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCcEEEe---CCCchHHHHHHHHhCCCCceEEEEC
Confidence 78999994 467777777765 2346888999999999998887654332 11111 123469999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-.. ..+....+.|+|||.+++...
T Consensus 225 ~g~--------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 225 VGK--------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp CGG--------GGHHHHHHHEEEEEEEEECCC
T ss_pred CCh--------HHHHHHHHHhccCCEEEEEcC
Confidence 331 256778889999999998754
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.10 E-value=1.2 Score=41.62 Aligned_cols=71 Identities=15% Similarity=0.015 Sum_probs=52.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC---C-CCCccEEEec
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY---P-SLSFDMVHCA 287 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~---~-~~sFDlV~~~ 287 (372)
..+++|+=||.|.++..+...|+....+.++|+++..++.-+.+.....+...|...+.. + .+.+|+++..
T Consensus 16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGG 90 (295)
T ss_dssp CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEec
Confidence 358999999999999999888876555789999999988766664444444556655531 1 1369999975
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=1.3 Score=41.24 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=63.6
Q ss_pred eEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CCCCCCCccEEEeccccccccc
Q 017377 219 SVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 219 ~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+||=+|+ |.|.++..+++.. ...+++++.++...+.+++.|....+..-+... .....+.+|+|+-.-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g------ 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG------ 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC------
T ss_pred eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC------
Confidence 4998887 5688888888762 246888999999999999888765443211111 1123457998875421
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ..+.+..+.|+|+|.+++....
T Consensus 221 ~--~~~~~~~~~l~~~G~iv~~G~~ 243 (324)
T 3nx4_A 221 D--KVLAKVLAQMNYGGCVAACGLA 243 (324)
T ss_dssp H--HHHHHHHHTEEEEEEEEECCCT
T ss_pred c--HHHHHHHHHHhcCCEEEEEecC
Confidence 1 2788899999999999987643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=86.71 E-value=1.1 Score=42.34 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=71.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC-CCCCccEEEeccccccc---
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY-PSLSFDMVHCAQCGIIW--- 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~-~~~sFDlV~~~~~~~~~--- 293 (372)
.+++|+.||.|.++..+...|+ ..+.++|+++..++..+.+..... ..|...+.. .-..+|+|+...--..+
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~a 87 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred CcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchh
Confidence 5899999999999999988885 347889999999988776632222 345444421 11248999975111111
Q ss_pred -----cccHH-HHH---HHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 294 -----DKKEG-IFL---IEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 294 -----~~~~~-~~L---~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
.+++. .++ .++.+.++|--.++=.++..-. ......++.+....+++++.+.
T Consensus 88 g~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~------~~~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 88 GKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFAS------HDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp SCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGT------GGGGHHHHHHHHHHHHTTBCCE
T ss_pred cccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHh------ccccHHHHHHHHHHHhCCCEEE
Confidence 12222 233 3344556886443333343221 0223455656555567775443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.44 E-value=1.7 Score=40.88 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=42.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+.+.+.+... .++ ..|||.-||+|+.+......+ ..++|+|+++..++.+++|
T Consensus 240 ~l~~~~i~~~~-~~~--------~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r 293 (323)
T 1boo_A 240 KLPEFFIRMLT-EPD--------DLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFR 293 (323)
T ss_dssp HHHHHHHHHHC-CTT--------CEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGG
T ss_pred HHHHHHHHHhC-CCC--------CEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 45555555543 333 689999999999998887776 4588999999999999887
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=1 Score=42.62 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=59.8
Q ss_pred CeEEEeCCC-CcHHH-HHHH-hcCCceeE-EEEeeCCHH---HHHHHHHcCCCeEEEEeeccCCCCC-----CCCccEEE
Q 017377 218 QSVLDVGCG-FGSFG-AHLV-SLKLMAVC-VAVYEATGS---QVQLALERGLPAMIGNFISRQLPYP-----SLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~-~~L~-~~~~~~~~-v~gvD~s~~---~v~~A~~rgl~~~~~~~d~~~lp~~-----~~sFDlV~ 285 (372)
.+||=+|+| .|.++ ..++ +. .... |+++|.++. ..+.+++.|.... +.. .-.+. .+.||+|+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~--~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~--~~~~~~i~~~~gg~Dvvi 247 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDD--KGYENLYCLGRRDRPDPTIDIIEELDATYV--DSR--QTPVEDVPDVYEQMDFIY 247 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCT--TCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETT--TSCGGGHHHHSCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHH--cCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCC--ccCHHHHHHhCCCCCEEE
Confidence 689999985 36677 7777 54 2233 788898887 8888888776433 221 11111 13689998
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.-. . ...+.+..++|+|||.+++....
T Consensus 248 d~~g------~-~~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 248 EATG------F-PKHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp ECSC------C-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred ECCC------C-hHHHHHHHHHHhcCCEEEEEeCC
Confidence 6522 1 12677889999999999987654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=85.98 E-value=1.1 Score=42.32 Aligned_cols=90 Identities=21% Similarity=0.151 Sum_probs=61.2
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||-+|+|. |.++..+++.. .. .|+++|.++...+.+++.|....+ +..... .....+|+|+-.
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~---~~~~~~~~~~v~~~~~g~g~D~vid~ 243 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKKVGADYVI---NPFEEDVVKEVMDITDGNGVDVFLEF 243 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHHTCSEEE---CTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEE---CCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 6899999863 66777777652 23 578899999999999888865432 211111 122369999875
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. . ...+.+..+.|++||.++....
T Consensus 244 ~g------~-~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 244 SG------A-PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp SC------C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CC------C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 32 1 1367788899999999998654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.87 E-value=2.4 Score=40.84 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=59.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||=+|+|. |.++..+++.. .. .|+++|.++.-.+.+++.|....+. ..... .....+|+|+-.
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~---~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKELGADHVID---PTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHTCSEEEC---TTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcCCCEEEc---CCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 6888899864 66777777652 23 6888999999999999988664432 11111 123469999865
Q ss_pred cccccccccHHHHHHHHH----hcccCCeEEEEEeCCC
Q 017377 288 QCGIIWDKKEGIFLIEAD----RLLKPGGYFVLTSPES 321 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~----rvLkPGG~lvis~p~~ 321 (372)
-. .....+..+. +.+++||.+++.....
T Consensus 290 ~g------~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~ 321 (404)
T 3ip1_A 290 TG------VPQLVWPQIEEVIWRARGINATVAIVARAD 321 (404)
T ss_dssp SS------CHHHHHHHHHHHHHHCSCCCCEEEECSCCC
T ss_pred CC------CcHHHHHHHHHHHHhccCCCcEEEEeCCCC
Confidence 22 1111333344 4559999999876543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.80 E-value=1.4 Score=42.22 Aligned_cols=94 Identities=22% Similarity=0.307 Sum_probs=62.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee---ccC----C-C-CCCCCccEEEec
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQ----L-P-YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d---~~~----l-p-~~~~sFDlV~~~ 287 (372)
.+||-+|+| .|.++..+++... ...|+++|.++...+.+++.|....+. .. ..+ + . .....+|+|+-.
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~~~~v~~~~~g~g~Dvvid~ 274 (380)
T 1vj0_A 197 KTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGADLTLN-RRETSVEERRKAIMDITHGRGADFILEA 274 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTCSEEEE-TTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHcCCcEEEe-ccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence 789999976 4677777776521 136888999999999999888754332 11 000 0 0 122369999865
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.. . ..+.+..+.|+|||.+++....
T Consensus 275 ~g~----~---~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 275 TGD----S---RALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp SSC----T---THHHHHHHHEEEEEEEEECCCC
T ss_pred CCC----H---HHHHHHHHHHhcCCEEEEEecC
Confidence 321 1 2577888999999999987643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=6.8 Score=36.58 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=62.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C--CC--eEEEEeeccCCC---------CCC
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G--LP--AMIGNFISRQLP---------YPS 278 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g--l~--~~~~~~d~~~lp---------~~~ 278 (372)
+++.|+++|||.=+....+.. .....+.-+| .+..++..++. + .. ..+...|..+ . |..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~ 177 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDP 177 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCT
T ss_pred CCCeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCC
Confidence 346799999999887666542 2235577788 57776544432 1 12 3344445443 2 222
Q ss_pred CCccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 279 LSFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 279 ~sFDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..--++++..+++++.++ ...++..+...+.||+++++...+.
T Consensus 178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 233455566555555433 3468888888889999999987654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=85.37 E-value=1 Score=41.46 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=59.5
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+||-+|+ |.|..+..+++.. ...++++|.++...+.+++.|....+. ... .++.-.-+.+|+|+. -..
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~ga~~~~~-~~~~~~~~~~~~~~d~vid-~g~---- 198 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALGAEEAAT-YAEVPERAKAWGGLDLVLE-VRG---- 198 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTTCSEEEE-GGGHHHHHHHTTSEEEEEE-CSC----
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcCCCEEEE-CCcchhHHHHhcCceEEEE-CCH----
Confidence 78999997 4677777777652 246888999988888888877654332 111 110000056999987 431
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+....+.|++||.++....
T Consensus 199 ----~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 199 ----KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp ----TTHHHHHTTEEEEEEEEEC--
T ss_pred ----HHHHHHHHhhccCCEEEEEeC
Confidence 156788899999999987654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.32 E-value=1 Score=42.50 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=61.0
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEeccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~ 289 (372)
.+||=+|+ |.|..+..+++.. ...+++++.++...+.+++.|....+. .+ ..+. .....+|+|+-+-.
T Consensus 161 ~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~ga~~v~~-~~-~~~~~~v~~~~~~~g~Dvvid~~g 236 (342)
T 4eye_A 161 ETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSVGADIVLP-LE-EGWAKAVREATGGAGVDMVVDPIG 236 (342)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEE-SS-TTHHHHHHHHTTTSCEEEEEESCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCCcEEec-Cc-hhHHHHHHHHhCCCCceEEEECCc
Confidence 78999997 4677887777762 246888899998889998887664432 11 1110 12346999987533
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+....+.|++||.+++...
T Consensus 237 ~--------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 237 G--------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp ----------CHHHHHHTEEEEEEEEEC--
T ss_pred h--------hHHHHHHHhhcCCCEEEEEEc
Confidence 1 146778899999999998653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.17 E-value=2.9 Score=39.73 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=63.0
Q ss_pred CeEEEeC-CC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee-----ccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVG-CG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-----SRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIG-CG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d-----~~~lp~~~~sFDlV~~~~~ 289 (372)
.+||=+| +| .|.++..+++. + ...|+++|.++...+.+++.|....+..-+ ... ...+.+|+|+-.-.
T Consensus 173 ~~VlV~Ga~G~vG~~a~qlak~~~--g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~--~~~~g~Dvvid~~g 248 (363)
T 4dvj_A 173 PAILIVGGAGGVGSIAVQIARQRT--DLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAA--LGLGAPAFVFSTTH 248 (363)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHT--TCSCCEEEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH--hcCCCceEEEECCC
Confidence 6899888 44 58888888875 3 246888999999999999888664432100 011 23457999886422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
....+.+..+.|+|||.+++..
T Consensus 249 -------~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 249 -------TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp -------HHHHHHHHHHHSCTTCEEEECS
T ss_pred -------chhhHHHHHHHhcCCCEEEEEC
Confidence 1236788899999999999874
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=2.6 Score=43.54 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=57.9
Q ss_pred CeEEEeCCCCcHHHHHHHhc-----------CCceeEEEEeeC---CHHHHHHHHHc-----------------CCC---
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-----------KLMAVCVAVYEA---TGSQVQLALER-----------------GLP--- 263 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-----------~~~~~~v~gvD~---s~~~v~~A~~r-----------------gl~--- 263 (372)
-+|||+|-|+|......... ......++.+|. +.+.++.+... .++
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 48999999999866555432 123467888998 77777644432 000
Q ss_pred ----------eEEEEeecc----CCCCC-CCCccEEEecccccccccc--HHHHHHHHHhcccCCeEEEEE
Q 017377 264 ----------AMIGNFISR----QLPYP-SLSFDMVHCAQCGIIWDKK--EGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 264 ----------~~~~~~d~~----~lp~~-~~sFDlV~~~~~~~~~~~~--~~~~L~el~rvLkPGG~lvis 317 (372)
..+...|+. +++.. ...||+|+.-...-.-.++ ...++..+.++++|||.+.-.
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 011111211 11111 4679999875311111111 135899999999999987643
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=84.14 E-value=1.8 Score=40.44 Aligned_cols=89 Identities=17% Similarity=0.042 Sum_probs=61.4
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||-+|+ |.|..+..++... ...++++|.++..++.+++.|....+ +..... .....+|+|+.+
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~i~~~~~~~~~d~vi~~ 221 (333)
T 1wly_A 147 DYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARKLGCHHTI---NYSTQDFAEVVREITGGKGVDVVYDS 221 (333)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCCEEE---ECCCHHHHHHHHHHhCCCCCeEEEEC
Confidence 78999995 6788777777652 24688899999888888877755332 221111 112469999876
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-.. ..+....+.|++||.+++...
T Consensus 222 ~g~--------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 222 IGK--------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp SCT--------TTHHHHHHTEEEEEEEEECCC
T ss_pred CcH--------HHHHHHHHhhccCCEEEEEec
Confidence 431 256788899999999988754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=1.6 Score=41.22 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=60.3
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||-+|+ |.|..+..++... ...++++|.++..++.+++.|....+ +.+..+. -...+.+|+|+.+-.
T Consensus 164 ~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~~G 240 (354)
T 2j8z_A 164 DYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKLGAAAGF-NYKKEDFSEATLKFTKGAGVNLILDCIG 240 (354)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred CEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCcEEE-ecCChHHHHHHHHHhcCCCceEEEECCC
Confidence 78999984 5677777776652 24688899999999988877765332 2111110 012346999987643
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. + .+.+..++|++||.+++...
T Consensus 241 ~----~----~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 241 G----S----YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp G----G----GHHHHHHHEEEEEEEEECCC
T ss_pred c----h----HHHHHHHhccCCCEEEEEec
Confidence 1 1 45677889999999998764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=84.07 E-value=3.9 Score=38.21 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=60.7
Q ss_pred CeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~~ 290 (372)
.+||=+|+|.+ .++..+++.- ....|+++|.+++-.+.+++.|....+..-+ .+.. .....+|.++....
T Consensus 165 ~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~-~~~~~~v~~~t~g~g~d~~~~~~~- 241 (348)
T 4eez_A 165 DWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKIGADVTINSGD-VNPVDEIKKITGGLGVQSAIVCAV- 241 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHTTCSEEEEC-C-CCHHHHHHHHTTSSCEEEEEECCS-
T ss_pred CEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhcCCeEEEeCCC-CCHHHHhhhhcCCCCceEEEEecc-
Confidence 78888999864 4555555431 2356889999999999999988775543211 1100 12234666654311
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
....+....+.|++||.+++.....
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~~~ 266 (348)
T 4eez_A 242 ------ARIAFEQAVASLKPMGKMVAVAVPN 266 (348)
T ss_dssp ------CHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred ------CcchhheeheeecCCceEEEEeccC
Confidence 1236788889999999999876543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.88 E-value=1.4 Score=40.98 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=59.4
Q ss_pred eEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec--cC-CCCCCCCccEEEeccccccc
Q 017377 219 SVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQ-LPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 219 ~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~-lp~~~~sFDlV~~~~~~~~~ 293 (372)
+||=+|+ |.|.++..+++.. ...+++++.++...+.+++.|....+..-+. .. .....+.+|+|+-+-..
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~--- 226 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG--- 226 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT---
T ss_pred eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH---
Confidence 7999997 5678888887752 2347788888888888888776543321111 00 11223469999865321
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+.+..+.|++||.+++...
T Consensus 227 -----~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 227 -----RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp -----TTHHHHHHTEEEEEEEEECSC
T ss_pred -----HHHHHHHHhhccCCEEEEEee
Confidence 146678889999999998654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=1.2 Score=41.52 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=60.2
Q ss_pred eEEEeCC--CCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec--cC-CCCCCCCccEEEecccccc
Q 017377 219 SVLDVGC--GFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQ-LPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 219 ~VLDIGC--G~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~-lp~~~~sFDlV~~~~~~~~ 292 (372)
+||=+|+ |.|.++..+++. | ..+++++.++...+.+++.|....+..-+. .. .....+.+|+|+-.-.
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~G---a~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g--- 226 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRG---YDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG--- 226 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHT---CCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC---
T ss_pred eEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCc---
Confidence 7999997 567777777765 4 347778888877888888786544321111 11 1122356999886532
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+.+..+.|++||.+++...
T Consensus 227 --~---~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 227 --G---KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp --T---HHHHHHHTTEEEEEEEEECCC
T ss_pred --H---HHHHHHHHhhcCCCEEEEEec
Confidence 1 257788899999999998654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=82.55 E-value=1.1 Score=42.62 Aligned_cols=93 Identities=20% Similarity=0.127 Sum_probs=57.6
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=+|+| .|.++..+++. ....++++|.++...+.++ +.|....+..-+...+.-..+.+|+|+-.-....
T Consensus 182 ~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~--- 256 (357)
T 2cf5_A 182 LRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH--- 256 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence 688889976 36666677665 2246888999988888887 6665543321110000000136999986532111
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+....++|+|||.+++...
T Consensus 257 ----~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 257 ----ALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ----CSHHHHTTEEEEEEEEECSC
T ss_pred ----HHHHHHHHhccCCEEEEeCC
Confidence 34566789999999998754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=82.44 E-value=2.6 Score=39.99 Aligned_cols=88 Identities=19% Similarity=0.061 Sum_probs=58.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCH---HHHHHHHHcCCCeEEEEeeccCCCCC------CCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATG---SQVQLALERGLPAMIGNFISRQLPYP------SLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~---~~v~~A~~rgl~~~~~~~d~~~lp~~------~~sFDlV~~~ 287 (372)
.+||-+|+|. |.++..+++. ....|+++|.++ ...+.+++.|.... + . . .+. .+.+|+|+.+
T Consensus 182 ~~VlV~GaG~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~--~-~~~~~~~~~~~~~d~vid~ 253 (366)
T 2cdc_A 182 RKVLVVGTGPIGVLFTLLFRT--YGLEVWMANRREPTEVEQTVIEETKTNYY--N-S--S-NGYDKLKDSVGKFDVIIDA 253 (366)
T ss_dssp CEEEEESCHHHHHHHHHHHHH--HTCEEEEEESSCCCHHHHHHHHHHTCEEE--E-C--T-TCSHHHHHHHCCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCccchHHHHHHHHhCCcee--c-h--H-HHHHHHHHhCCCCCEEEEC
Confidence 7899999842 5555555554 223678889887 77788887775433 2 2 2 221 1469999876
Q ss_pred cccccccccHHHHH-HHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFL-IEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L-~el~rvLkPGG~lvis~p~ 320 (372)
-... ..+ ....+.|++||.+++....
T Consensus 254 ~g~~-------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 254 TGAD-------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp CCCC-------THHHHHHGGGEEEEEEEEECSCC
T ss_pred CCCh-------HHHHHHHHHHHhcCCEEEEEecC
Confidence 3311 145 7889999999999987653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=82.20 E-value=2.6 Score=39.67 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=42.7
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCH---HHHHHHHHcC
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLALERG 261 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~---~~v~~A~~rg 261 (372)
.+.+.+.+... .++ ..|||.-||+|+.+......+ ..++|+|+++ ..++.+++|-
T Consensus 230 ~l~~~~i~~~~-~~~--------~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 230 AVIERLVRALS-HPG--------STVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp HHHHHHHHHHS-CTT--------CEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCC--------CEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHH
Confidence 45555555543 233 689999999999998888776 4578999999 9999998874
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=82.05 E-value=2.6 Score=39.65 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=60.4
Q ss_pred CeEEEeC-CC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-C-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVG-CG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-L-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIG-CG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+| +| .|.++..+++. ....+++++.++..++.+++.|....+. ... + ....+.||+|+-.-.
T Consensus 152 ~~VlV~gg~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~---~~~~~~~~~~~~~~~g~Dvv~d~~g 226 (346)
T 3fbg_A 152 KTLLIINGAGGVGSIATQIAKA--YGLRVITTASRNETIEWTKKMGADIVLN---HKESLLNQFKTQGIELVDYVFCTFN 226 (346)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH--TTCEEEEECCSHHHHHHHHHHTCSEEEC---TTSCHHHHHHHHTCCCEEEEEESSC
T ss_pred CEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhcCCcEEEE---CCccHHHHHHHhCCCCccEEEECCC
Confidence 6899884 44 47777777765 2346888999999999999888654332 111 0 012346999986422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
....+....+.|+|||.++...
T Consensus 227 -------~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 227 -------TDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEESS
T ss_pred -------chHHHHHHHHHhccCCEEEEEC
Confidence 1236788889999999997653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=81.78 E-value=2.3 Score=44.18 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=57.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhc-----------CCceeEEEEeeC---CHHHHHHHHHc--------------------C-
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL-----------KLMAVCVAVYEA---TGSQVQLALER--------------------G- 261 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~-----------~~~~~~v~gvD~---s~~~v~~A~~r--------------------g- 261 (372)
.-+|+|+|.|+|.....+.+. ......++.+|. +.+.+..|... |
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 358999999999876665542 112367888888 55555543321 0
Q ss_pred ---------CCeEEEEeeccC-CC-CC---CCCccEEEecccccccccc--HHHHHHHHHhcccCCeEEEE
Q 017377 262 ---------LPAMIGNFISRQ-LP-YP---SLSFDMVHCAQCGIIWDKK--EGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 262 ---------l~~~~~~~d~~~-lp-~~---~~sFDlV~~~~~~~~~~~~--~~~~L~el~rvLkPGG~lvi 316 (372)
+...+..+|+.+ ++ ++ +..||+++.-...-.-.++ ...++..+.++++|||.+.-
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 011122223211 22 11 4679999885321111111 13589999999999998663
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.62 E-value=1.7 Score=41.09 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC-------CCCCccEEEecc
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY-------PSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~-------~~~sFDlV~~~~ 288 (372)
.+||=+| .|.|..+..+++.. ...++++|.++...+.+++.|....+. .....+ ..+.+|+|+.+-
T Consensus 169 ~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~~~~---~~~~~~~~~~~~~~~~g~Dvvid~~ 243 (353)
T 4dup_A 169 ESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERLGAKRGIN---YRSEDFAAVIKAETGQGVDIILDMI 243 (353)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHTCSEEEE---TTTSCHHHHHHHHHSSCEEEEEESC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCCCEEEe---CCchHHHHHHHHHhCCCceEEEECC
Confidence 7899995 34577777777652 346888999999999999888664432 111111 134699998763
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. ..+....+.|++||.+++...
T Consensus 244 g~--------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 244 GA--------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp CG--------GGHHHHHHTEEEEEEEEECCC
T ss_pred CH--------HHHHHHHHHhccCCEEEEEEe
Confidence 31 156677889999999998754
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=80.72 E-value=20 Score=33.11 Aligned_cols=126 Identities=8% Similarity=0.010 Sum_probs=72.3
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC-CCCccEEEeccccccc----
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP-SLSFDMVHCAQCGIIW---- 293 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~-~~sFDlV~~~~~~~~~---- 293 (372)
+|||+=||.|.+..-|...|+. .+.++|+++.+++.-+.+. +..+...|...+... -..+|+++...--..+
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~--~v~a~e~d~~a~~ty~~N~-~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFR--IICANEYDKSIWKTYESNH-SAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCE--EEEEEECCTTTHHHHHHHC-CSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred eEEEeCcCccHHHHHHHHCCCE--EEEEEeCCHHHHHHHHHHC-CCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 6999999999999998888864 3678999999887766554 334444566555321 1358999874110111
Q ss_pred ----cccH-HHHHH---HHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 ----DKKE-GIFLI---EADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ----~~~~-~~~L~---el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..|+ ..++. ++.+.++|--.++=.++..-.. .....+..+..-.+++++.+...
T Consensus 79 ~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~------~~~~~~~~i~~~l~~~GY~v~~~ 140 (331)
T 3ubt_Y 79 SLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQ------RHNKAVQEFIQEFDNAGYDVHII 140 (331)
T ss_dssp EECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGC------TTSHHHHHHHHHHHHHTEEEEEE
T ss_pred CccCCCCchhHHHHHHHHHHhccCCeEEEeeeecccccc------cccchhhhhhhhhccCCcEEEEE
Confidence 1222 23444 4455578863333223322111 22244555555557777665443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=80.63 E-value=1.5 Score=41.77 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=+|+|. |.++..+++.. ...+++++.++...+.++ +.|....+..-+...+.-..+.+|+|+..-....
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~--- 263 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVH--- 263 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCC---
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHH---
Confidence 6888899763 66666666652 246888899988888877 5565433211110000000136999987533111
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+....+.|++||.++....
T Consensus 264 ----~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 264 ----PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ----CSHHHHHHEEEEEEEEECCC
T ss_pred ----HHHHHHHHHhcCCEEEEEcc
Confidence 24456788999999988654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=3.2 Score=39.09 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=59.4
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHH-cCCCeEEEEeeccCCC-------CCCCCccEEEe
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALE-RGLPAMIGNFISRQLP-------YPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~-rgl~~~~~~~d~~~lp-------~~~~sFDlV~~ 286 (372)
.+||=+|+ |.|..+..++.. ... .++++|.++...+.+++ .|....+ +..... ...+.+|+|+.
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~--~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~d~vi~ 236 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHF--LGCSRVVGICGTHEKCILLTSELGFDAAI---NYKKDNVAEQLRESCPAGVDVYFD 236 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHTSCCSEEE---ETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHH--CCCCeEEEEeCCHHHHHHHHHHcCCceEE---ecCchHHHHHHHHhcCCCCCEEEE
Confidence 68999997 456666666664 224 67888999988888876 5654322 221111 01126999987
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+-. ...+....++|++||.+++...
T Consensus 237 ~~G--------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 237 NVG--------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp SCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCC--------HHHHHHHHHHhccCcEEEEECC
Confidence 643 1367888999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 372 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-07 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-06 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 3e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 4e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-05 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 3e-05 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 3e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 6e-05 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 1e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 3e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 4e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 7e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 0.001 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.001 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.003 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.004 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 49.7 bits (117), Expect = 1e-07
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 4/136 (2%)
Query: 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVA 245
D + ++ +I + + E + V+ VLD+ CG G L V +
Sbjct: 13 DTIYRRRIERVKAEIDFVEEI--FKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLD 70
Query: 246 VYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQ--CGIIWDKKEGIFLIE 303
++E + + + FD V ++ +
Sbjct: 71 LHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSK 130
Query: 304 ADRLLKPGGYFVLTSP 319
LKPGG F+ P
Sbjct: 131 VAEALKPGGVFITDFP 146
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 13/152 (8%)
Query: 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258
++A MI L L+ + VL +G G+ +HL + + AV E + + L
Sbjct: 41 KLAAMI-LKGHRLKLRGD-ERVLYLGAASGTTVSHLADIVDEGIIYAV-EYSAKPFEKLL 97
Query: 259 ER-----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGY 313
E + ++ + + S + V I + I A+ LK G
Sbjct: 98 ELVRERNNIIPLLFDA--SKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGE 155
Query: 314 FVLTSPESKPRGSSSSRKNKSLLKVMEEFTEK 345
V+ K R S+ + + + K + + E
Sbjct: 156 VVIM---VKARSIDSTAEPEEVFKSVLKEMEG 184
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHL---VSLKLMAVCVAVYEATGSQVQ 255
++ I G + ++ G +SVL +G G+ +H+ V + + ++
Sbjct: 57 KLGAAIMNGLKNFPIKPG-KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 256 LALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFV 315
+E + + + V + + I + A+ LK GGY +
Sbjct: 116 PIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGM 175
Query: 316 LTSPESKPRGSSSSRKNKSLLKVMEE 341
+ K R +++ + + + +E
Sbjct: 176 IA---VKSRSIDVTKEPEQVFREVER 198
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 4e-06
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 20/120 (16%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG---SQVQLALERGLPAMIGNFISRQ-- 273
+L +G G G ++S S Q+A + L A I N + +
Sbjct: 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFA 102
Query: 274 --------------LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+D +H Q L LL ++
Sbjct: 103 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA-TLKFFHSLLGTNAKMLIIVV 161
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 45.3 bits (106), Expect = 5e-06
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPS 278
++D GCG+G G L+ L ++ + + A E +
Sbjct: 30 HIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI 89
Query: 279 LSFDMVHCAQC--GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
D A C ++ L + +K GG + P
Sbjct: 90 ELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (102), Expect = 1e-05
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 5/110 (4%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHL---VSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF 269
++ G +LD+G G G + + ++ ++ + +
Sbjct: 31 MKPG-TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89
Query: 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ D+ C I G + LKPGG ++ P
Sbjct: 90 NDAAGYVANEKCDVAACVGATWIAGGFAGAE-ELLAQSLKPGGIMLIGEP 138
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 8/151 (5%)
Query: 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAV---YEATGS 252
++A I G ++ +L +G G+ +H+ + + A+
Sbjct: 55 NKSKLAAAIIKGLKVMPIKRD-SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE 113
Query: 253 QVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGG 312
+ ER I ++ Y ++ + + ++ E I + A LK GG
Sbjct: 114 LLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAE-ILIKNAKWFLKKGG 172
Query: 313 YFVLTSPESKPRGSSSSRKN--KSLLKVMEE 341
Y + + +++ + K K +++E
Sbjct: 173 YGM-IAIKARSIDVTKDPKEIFKEQKEILEA 202
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 16/120 (13%)
Query: 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ-LALERGLPAMIGNFISRQL 274
G VLDV CG G LV V + R ++ +
Sbjct: 56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA 115
Query: 275 PYPSL---------------SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ +L + + + L +++PGG V+
Sbjct: 116 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 3/105 (2%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
LD+ CG G+ +L V + + S+ +
Sbjct: 39 DDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI 98
Query: 278 SLSFDMVHCAQCGIIWDKKEGI---FLIEADRLLKPGGYFVLTSP 319
+ FD++ C + + LK GG F+
Sbjct: 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSL 279
LD+GCG G +L + A+ + ++ + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD 93
Query: 280 -SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKPRG 325
+D + + + + + R KPGGY ++ + P
Sbjct: 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF 141
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPS 278
++L++G G F + L CV EA+ + A R + +
Sbjct: 23 NLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQLP 79
Query: 279 LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+D + D + D L GG L P
Sbjct: 80 RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 120
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
++D G G G+ A L + V YE +LA + ++ ++
Sbjct: 105 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 164
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
S FD + + LK GG F P
Sbjct: 165 SEGFDEKDVDALFLDVPDPWNYI-DKCWEALKGGGRFATVCP 205
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 213 LQAGVQSVLDVGCGFGSFGAHLVSL--KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI 270
+A VLD+G G G + + V + +
Sbjct: 14 CRAE-HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGT 72
Query: 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
+ LP+P SFD++ C + + E R+LK G F+L
Sbjct: 73 AESLPFPDDSFDIITCRYAAHHFSDVRK-AVREVARVLKQDGRFLL 117
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 40.5 bits (93), Expect = 1e-04
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 4/102 (3%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
VLD+G G G + L V V + + + + LP+P
Sbjct: 44 CRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR----EKGVKNVVEAKAEDLPFP 99
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
S +F+ V + + + + E R+L P G + T
Sbjct: 100 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 40.1 bits (92), Expect = 1e-04
Identities = 15/169 (8%), Positives = 34/169 (20%), Gaps = 22/169 (13%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
VL CG + L V E + + V+ Y
Sbjct: 22 ARVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYA 78
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLI-------------------EADRLLKPGGYFVLTS 318
+ ++ + + L+ +L +
Sbjct: 79 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138
Query: 319 PESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAH 367
E + + + + + QD + + A
Sbjct: 139 LEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGLKAG 187
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 1/102 (0%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+L+VG G G+ ++++ + V E ++ A++ +
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
+ + + ++KPG P
Sbjct: 147 ADFISDQMYDAVIADIPDPW-NHVQKIASMMKPGSVATFYLP 187
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 23/147 (15%)
Query: 182 FHSEDGLVFDGVKD------YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLV 235
+ G+ + ++D Y I + L D + VLDVGCG G
Sbjct: 6 SYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKD--------KIVLDVGCGTGILSMFAA 57
Query: 236 SLKLMAVCVAVYEATGSQVQLA-------LERGLPAMIGNFISRQLPYPSLSFDMVHCAQ 288
K A V + + + + G LP+P + +
Sbjct: 58 --KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115
Query: 289 CGIIWDKKEGIFLIEADRLLKPGGYFV 315
++++ L D L GG
Sbjct: 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (90), Expect = 7e-04
Identities = 13/164 (7%), Positives = 39/164 (23%), Gaps = 27/164 (16%)
Query: 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV 254
++ + + L + +D+G G G+ A+ E
Sbjct: 203 NFLSDVYQQCQLKKG--------DTFMDLGSGVGNCVVQAALECGCALSFGC-EIMDDAS 253
Query: 255 QLALER-----------GLPAMIGNFISRQLPYPSLSFD------MVHCAQCGIIWDKKE 297
L + + G+ F ++ + V + +
Sbjct: 254 DLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLN 313
Query: 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEE 341
+ + K G + + +++ ++
Sbjct: 314 KKV-EKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKV 356
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.0 bits (87), Expect = 0.001
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 13/123 (10%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI 270
+ + G SVLD+GCG G + + + A R +
Sbjct: 20 LYTKRG-DSVLDLGCGKGGDLLKY--ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV 76
Query: 271 S-------RQLPYPSLSFDMVHCAQCGIIWDKKEGIF---LIEADRLLKPGGYFVLTSPE 320
+ FD++ R L+PGGYF++T P
Sbjct: 77 FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136
Query: 321 SKP 323
Sbjct: 137 RDV 139
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 0.001
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 187 GLVFDGVKD------YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL--- 237
G+ + +KD Y + L D + VLDVG G G
Sbjct: 6 GIHEEMLKDEVRTLTYRNSMFHNRHLFKD--------KVVLDVGSGTGILCMFAAKAGAR 57
Query: 238 KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCG--IIWDK 295
K++ + + ++ A + I ++ P D++ G + ++
Sbjct: 58 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 117
Query: 296 KEGIFLIEADRLLKPGGYFV 315
L D+ L P G
Sbjct: 118 MLNTVLHARDKWLAPDGLIF 137
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 9/108 (8%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-----SR 272
+ VLDVGCG G K A V + + Q L +
Sbjct: 37 KVVLDVGCGTGILSMFAA--KAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE 94
Query: 273 QLPYPSLSFDMVHCAQCGIIWDKKEG--IFLIEADRLLKPGGYFVLTS 318
++ P D++ G + L ++ L GG
Sbjct: 95 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDI 142
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.002
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 14/115 (12%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+VL+ G G G L V +E LA + ++ +
Sbjct: 100 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN-YKHWRDSWKLSHVEEW 158
Query: 278 SLSFDMVHCAQCGIIWDKKEGIF-------------LIEADRLLKPGGYFVLTSP 319
+ D +H G D K F L LK GG +
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 213
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.003
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 25/158 (15%)
Query: 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSF---------GAHLVSLKLMAVCVAVYE 248
Q+ + I + D +D+G G G H ++ + E
Sbjct: 141 AQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE 192
Query: 249 ATGSQVQLALERGLPA------MIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI 302
+ + ++ G+F + + + + L
Sbjct: 193 TMDREFRKWMKWYGKKHAEYTLERGDF--LSEEWRERIANTSVIFVNNFAFGPEVDHQLK 250
Query: 303 EADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVME 340
E +K GG V + P + +SR + +M
Sbjct: 251 ERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMR 288
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 36.2 bits (82), Expect = 0.004
Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+ VLDV G G V + E + +E + P
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 278 SLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVL 316
F+ EA R+LK GG +L
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 116
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.004
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 211 EFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI 270
E L +VLD+GCG G + + + + ++ A +R
Sbjct: 79 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRYPQVTFCVAS 137
Query: 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319
S +LP+ S D + E R++KPGG+ + +P
Sbjct: 138 SHRLPFSDTSMDAIIRIYA--------PCKAEELARVVKPGGWVITATP 178
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.76 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.75 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.7 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.69 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.65 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.65 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.64 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.63 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.62 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.6 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.6 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.58 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.54 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.54 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.5 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.5 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.5 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.49 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.46 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.46 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.43 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.42 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.38 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.35 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.33 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.32 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.31 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.27 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.27 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.26 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.24 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.21 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.2 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.19 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.15 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.98 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.97 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.97 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.86 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.86 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.77 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.76 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.76 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.75 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.73 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.72 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.7 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.66 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.6 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.6 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.52 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.46 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.44 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.36 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.36 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.29 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.29 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.29 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.28 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.27 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.25 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.17 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.15 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.14 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.04 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.03 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.99 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.89 | |
| d1r8da_ | 109 | Multidrug transporter activator MtaN {Bacillus sub | 97.86 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.86 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.85 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.85 | |
| d1q06a_ | 127 | Transcriptional regulator CueR {Escherichia coli [ | 97.85 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.83 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.81 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.74 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.69 | |
| d1r8ea1 | 118 | Transcription activator BmrR {Bacillus subtilis [T | 97.63 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.6 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.56 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.52 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.51 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.43 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.29 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.27 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.24 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.05 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.65 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.48 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.18 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.88 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.31 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.02 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.77 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.42 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.31 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.76 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 93.75 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.73 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.67 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.56 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.5 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.46 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.21 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.89 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.53 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.25 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.57 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.45 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.14 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.61 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.39 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.8 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.56 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.63 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.54 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 87.46 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.06 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 85.5 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 84.98 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.43 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.72 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 82.58 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.84 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=2.4e-19 Score=162.37 Aligned_cols=114 Identities=22% Similarity=0.298 Sum_probs=99.1
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
+..+.+.+.+..+++ .+|||||||+|.++..|++++ ..++|+|+|+.|++.|+++ ++ ++.+...
T Consensus 3 ~~~~~l~~~~~~~~~--------~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~ 71 (234)
T d1xxla_ 3 HSLGLMIKTAECRAE--------HRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQG 71 (234)
T ss_dssp HHHHHHHHHHTCCTT--------CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred hHHHHHHHHhCCCCC--------CEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccc
Confidence 456678888888888 899999999999999999875 4689999999999988765 44 3778888
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+..+|+++++||+|+|..+++|+ +++..+|+++.|+|||||++++++..
T Consensus 72 d~~~~~~~~~~fD~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 72 TAESLPFPDDSFDIITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccccccceeeeeceeecc-cCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 999999999999999999887665 77888999999999999999998654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=2.7e-19 Score=160.84 Aligned_cols=112 Identities=22% Similarity=0.353 Sum_probs=95.0
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeecc
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISR 272 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~ 272 (372)
..+.+.+++.++ .+|||||||+|.++..+++++ ..++|+|+|+.|++.|+++ +. ++.+.+.+..
T Consensus 5 ~~ll~~~~l~~~--------~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~ 73 (231)
T d1vl5a_ 5 AKLMQIAALKGN--------EEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE 73 (231)
T ss_dssp HHHHHHHTCCSC--------CEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHhcCCCCc--------CEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccc
Confidence 356667777776 899999999999999999886 3589999999999988765 43 4678888999
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+|+++++||+|+|..+++|+ +++..+|.++.|+|||||++++.++..
T Consensus 74 ~l~~~~~~fD~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 74 QMPFTDERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp CCCSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccccccccccc-CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999999999999999987776 778889999999999999999987643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.2e-18 Score=157.34 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=87.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..|++.+ ..|+|+|+|+.|++.|++++... +..+++.++|+++++||+|+|...++|+.+++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~ 119 (246)
T d2avna1 44 CRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 119 (246)
T ss_dssp CEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhhhH
Confidence 689999999999999999875 46999999999999999997654 34568899999999999999876555555888
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+|+++.|+|||||+++++.++.
T Consensus 120 ~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 120 DKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHhhcCcCcEEEEEECCH
Confidence 889999999999999999998743
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=4.9e-18 Score=151.30 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=87.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++..+++.+ ..++|+|+|+.|++.|+++ +..+.....|+..+|+++++||+|+|..+++|+
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 689999999999999999875 4589999999999988765 566777778899999999999999999998887
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. .+...+|+++.++|||||++++..++
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 4 35567999999999999999998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.74 E-value=4.2e-18 Score=158.50 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=89.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..|+++. ...|+|+|+|+.|++.|+++ |+ .+.+...++.++|+++++||+|+|..+++
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~ 146 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL 146 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred CEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhh
Confidence 799999999999999999862 25689999999999988865 44 37788889999999999999999999988
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
|+ +++..+|.++.++|||||+++++++...
T Consensus 147 h~-~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 147 HS-PDKLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hc-cCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 88 6778899999999999999999887544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.4e-17 Score=151.60 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
....+.+.+.+.+.++ .+|||||||+|.++..+++.. ...++|+|+|+.|++.|+++ |+. +.+.
T Consensus 19 ~~~~~~l~~~~~l~pg--------~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~ 88 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPG--------TRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 88 (245)
T ss_dssp HHHHHHHHHHTCCCTT--------CEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHcCCCCC--------CEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhh
Confidence 4556778888888887 899999999999999998762 25689999999999988765 554 6777
Q ss_pred EeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..|...+ +++++||+|+|..+++|+ .+...++.++.|+|||||++++.++.
T Consensus 89 ~~d~~~~-~~~~~fD~v~~~~~~~~~-~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 89 HNDAAGY-VANEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp ESCCTTC-CCSSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hhHHhhc-cccCceeEEEEEehhhcc-CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 7888877 568999999999998877 56678999999999999999998874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=5.6e-17 Score=143.51 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=96.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+.+ ++|+|+|+.|++.|+++++ .+.+.++.++|+++++||+|+|..+++|+ +++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV--FVLKGTAENLPLKDESFDFALMVTTICFV-DDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC--EEEECBTTBCCSCTTCEEEEEEESCGGGS-SCH
T ss_pred CeEEEECCCCcccccccce-------EEEEeCChhhccccccccc--ccccccccccccccccccccccccccccc-ccc
Confidence 5799999999999888742 4689999999999999864 55666888999999999999999998887 678
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCC-----------CCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPR-----------GSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~-----------~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
..+|.++.++|+|||.+++.+++.... ...+.......-+.+.++.++.+++.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 889999999999999999999876640 000100000112446677788898765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=8.3e-17 Score=146.13 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=84.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
..+|||||||+|.++..|++++. .++|+|+|+.|++.|+++ ++++.+.+.++.+++++ ++||+|+|.+..++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 37899999999999999999863 589999999999988865 66788888999999987 58999999754444
Q ss_pred cc--ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WD--KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~--~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+. ++...+|++++++|||||++++..++.
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 43 345579999999999999999987653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=7e-17 Score=149.48 Aligned_cols=98 Identities=21% Similarity=0.356 Sum_probs=86.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||||||+|.++..|++... ...++|+|+|+.|++.|+++..++.+..+|+.++|+++++||+|++.++..+
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---- 159 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---- 159 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC----
T ss_pred CCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH----
Confidence 36899999999999999998853 3668999999999999999988888888999999999999999999876443
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+.|+.|+|||||++++++|+...
T Consensus 160 ----~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 160 ----AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp ----HHHHHHHEEEEEEEEEEEECTTT
T ss_pred ----HHHHHHHhCCCcEEEEEeeCCcc
Confidence 57899999999999999987654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=1.4e-16 Score=148.40 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=88.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+.+|||||||+|.++..+++.......++|+|+|+.+++.|+++ +.++.+...|+..++++ ++||+|+|..+++
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l~ 105 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLL 105 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhhh
Confidence 447999999999999999988644456799999999999998866 45577788888888886 5799999999877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+ +++..+|+++.++|||||.+++.+|.
T Consensus 106 ~~-~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 106 HM-TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GC-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 76 77888999999999999999999875
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-16 Score=142.57 Aligned_cols=136 Identities=16% Similarity=0.081 Sum_probs=102.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----C-CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----L-PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+|||||||+|.++..+++.+. ..|+++|+|+.|++.|+++. . ...+.+.++..+++++++||+|++..+++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999877654 46899999999999998763 2 24677889999999999999999999988
Q ss_pred ccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc--hhhHHHHHHHHHHHhcCeeEEeee
Q 017377 292 IWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR--KNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 292 ~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~--e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
|+.++ ...+|+++.++|+|||.++++++........... ......+.+..+.++.+++++..+
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 87533 2479999999999999999997655431110000 111123456677788899887654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.65 E-value=3.5e-16 Score=140.58 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=105.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|||||||+|.++..+++.+. .++|+|+|+.+++.|+++.. .+.+...+...+++ +++||+|+|..+++|+ ++
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~-~d 96 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI-DD 96 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC-SS
T ss_pred CcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEec-CC
Confidence 6899999999999999988763 48999999999999998743 35666667777765 5899999999988777 78
Q ss_pred HHHHHHHHH-hcccCCeEEEEEeCCCCCC-----------CCCCc---c------hhhHHHHHHHHHHHhcCeeEEeeec
Q 017377 297 EGIFLIEAD-RLLKPGGYFVLTSPESKPR-----------GSSSS---R------KNKSLLKVMEEFTEKICWSLIAQQD 355 (372)
Q Consensus 297 ~~~~L~el~-rvLkPGG~lvis~p~~~~~-----------~~~~~---~------e~~~~w~~i~~l~~~lcw~~~~~~~ 355 (372)
+..+|.++. ++|+|||.++++.|+.... ..... . ...-.++.++.+.++.+++.+...
T Consensus 97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~- 175 (225)
T d2p7ia1 97 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS- 175 (225)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE-
Confidence 888999997 8999999999999875541 00000 0 001125678888899999876533
Q ss_pred ceEEEEecCC
Q 017377 356 ETFIWQKTVD 365 (372)
Q Consensus 356 ~~~iw~K~~~ 365 (372)
.++-||..
T Consensus 176 --~~~~kp~~ 183 (225)
T d2p7ia1 176 --GIFFKALA 183 (225)
T ss_dssp --EEEECCSC
T ss_pred --EEEecccc
Confidence 34455543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.65 E-value=3.1e-16 Score=144.03 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=101.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--C-eEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P-AMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
..+|||+|||+|.++..|+.++. ..|+++|+|+.|++.|+++.. + +.+.+.++..+++++++||+|+|..+++|+
T Consensus 94 ~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl 171 (254)
T d1xtpa_ 94 TSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL 171 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccccc
Confidence 37899999999999999887643 368999999999999998732 3 456777888999999999999999998888
Q ss_pred ccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc---hhhHHHHHHHHHHHhcCeeEEeee
Q 017377 294 DKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR---KNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 294 ~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~---e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.++ ...+|+++.++|+|||++++.++........... ......+.++.+.++.+++++...
T Consensus 172 ~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred chhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 543 3478999999999999999988654431111000 011123445667788889887554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.64 E-value=1.1e-15 Score=137.04 Aligned_cols=104 Identities=15% Similarity=0.019 Sum_probs=82.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-CceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|..+..|++.. .....++|+|+|+.|++.|+++ +.. +.+...+. .+++...+|+|+|+.++
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~--~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--RHVEIKNASMVILNFTL 118 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT--TTCCCCSEEEEEEESCG
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh--hccccccceeeEEeeec
Confidence 689999999999999998752 2457899999999999999875 333 34444443 45566789999999887
Q ss_pred cccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++++ ++...+|++++|+|||||.+++.++....
T Consensus 119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp GGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred cccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence 7765 56678999999999999999999876443
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=6.4e-16 Score=144.66 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=93.1
Q ss_pred cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEE
Q 017377 191 DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMI 266 (372)
Q Consensus 191 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~ 266 (372)
+...+..+.+.+.+.+.++ .+|||||||.|.++.+++++. ...++|+++|+.+++.|+++ ++...+
T Consensus 44 ~Aq~~k~~~~~~~l~l~~G--------~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v 113 (291)
T d1kpia_ 44 EAQYAKRKLALDKLNLEPG--------MTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRK 113 (291)
T ss_dssp HHHHHHHHHHHHTTCCCTT--------CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHHHHHhcCCCCC--------CEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhh
Confidence 3334557777788877777 899999999999999998762 35689999999999877665 554322
Q ss_pred EEeeccCCCCCCCCccEEEeccccccccc--------cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWDK--------KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ...+.++++++||.|+|..++.|+.+ +...+++++.++|||||.+++.+...
T Consensus 114 ~~-~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 114 EV-RIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp EE-EECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred hh-hhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 21 22334567899999999999999864 34679999999999999999987654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.63 E-value=6.4e-16 Score=140.34 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=82.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecc-ccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQ-CGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~-~~~ 291 (372)
+.+|||||||+|.++..|++++. .++|+|+|+.|++.|+++ +.++.+.+.|+..++++ ++||+|+|.. ++.
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeee
Confidence 47899999999999999999874 589999999999998765 67788888888888764 6899999864 444
Q ss_pred ccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWD--KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~--~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|+. ++...+|++++++|+|||.|++...
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 442 3455799999999999999998654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=1.1e-15 Score=142.47 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
.+..+.+.+.+.+.++ .+|||||||+|.++.+++++. ...|+|+|+|+.+++.|+++ ++. +.+.
T Consensus 38 ~~k~~~~~~~l~l~~g--------~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~ 107 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPG--------MTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVL 107 (280)
T ss_dssp HHHHHHHHTTSCCCTT--------CEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE
T ss_pred HHHHHHHHHHcCCCCC--------CEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhh
Confidence 3446666666666666 899999999999999998772 25699999999999988776 554 3333
Q ss_pred EeeccCCCCCCCCccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+...+ +++||.|++..+++|+.. +...+|+++.++|||||.+++.+.
T Consensus 108 ~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 108 LQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp ESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 3343333 578999999999999863 446799999999999999999764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=7.5e-16 Score=133.73 Aligned_cols=116 Identities=13% Similarity=-0.071 Sum_probs=88.5
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------------
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--------------- 261 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--------------- 261 (372)
..+....+...++ .+|||+|||+|..+.+|+++| ..|+|+|+|+.|++.|+++.
T Consensus 9 ~~~~~~~l~~~~~--------~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~ 77 (201)
T d1pjza_ 9 LQQYWSSLNVVPG--------ARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77 (201)
T ss_dssp HHHHHHHHCCCTT--------CEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred HHHHHHHcCCCCC--------CEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhc
Confidence 3444555666666 899999999999999999987 45899999999999998862
Q ss_pred --CCeEEEEeeccCCC-CCCCCccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 262 --LPAMIGNFISRQLP-YPSLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 262 --l~~~~~~~d~~~lp-~~~~sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
....+...+...++ .+..+||+|++..++++..+ +...+++++.++|||||.+++.......
T Consensus 78 ~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp ECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred cccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 12234444555554 34578999999988777754 3457999999999999999887655433
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=3.4e-15 Score=131.32 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=82.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|..+..|++++. .++++|+|+.|++.|+++ +++ +.+...|...+++ +++||+|+|..+++|
T Consensus 32 grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 5899999999999999999874 589999999999877644 555 4566667777775 688999999999888
Q ss_pred cccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+++. ...++.++.++|+|||++++.....
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 7543 3579999999999999999986543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.60 E-value=1.3e-15 Score=139.22 Aligned_cols=101 Identities=23% Similarity=0.200 Sum_probs=82.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCC-CCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPY-PSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~-~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|..+..+++.+. ..++|+|+|+.|++.|+++ +. .+.+...|+...++ .+++||+|+|.+++
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 7899999999999999988754 3589999999999999875 22 36677778776666 46789999999887
Q ss_pred cccccc---HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKK---EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~---~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+|+..+ ...+|.++.++|||||+++++.++
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 776433 347899999999999999998764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=7.4e-15 Score=136.91 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeE
Q 017377 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAM 265 (372)
Q Consensus 192 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~ 265 (372)
...+..+.+.+.+.+.++ .+|||||||.|.++.++++. ....|+|+++|+.+++.|+++ ++ .+.
T Consensus 46 AQ~~k~~~~~~~l~l~~G--------~~VLDiGCG~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~ 115 (285)
T d1kpga_ 46 AQIAKIDLALGKLGLQPG--------MTLLDVGCGWGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSENLRSKR 115 (285)
T ss_dssp HHHHHHHHHHTTTTCCTT--------CEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEE
T ss_pred HHHHHHHHHHHHcCCCCC--------CEEEEecCcchHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhhhhhhhH
Confidence 334556677777777776 89999999999999998887 346799999999999988765 33 245
Q ss_pred EEEeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+...|...+ +++||.|++..++.|+. .+...+++++.|+|||||.+++.+..
T Consensus 116 ~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 116 VLLAGWEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp EEESCGGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHhhhhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 555565555 36899999999999986 44567999999999999999987654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=8.8e-15 Score=128.55 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=87.6
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC---CeEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIG 267 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl---~~~~~ 267 (372)
...+.+.+.+...++ .+|||||||+|.++..+++.+. .++++|+|+.+++.|+++ ++ .+.+.
T Consensus 39 ~~t~lLi~~l~~~~~--------~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~ 107 (194)
T d1dusa_ 39 KGTKILVENVVVDKD--------DDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVV 107 (194)
T ss_dssp HHHHHHHHHCCCCTT--------CEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHHhCCcCCC--------CeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEE
Confidence 334567777776655 7999999999999999988653 588999999999998864 33 35566
Q ss_pred EeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..|... ++++++||+|+|+..+++..+....++.++.++|+|||.+++...
T Consensus 108 ~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 108 HSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp ECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ecchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 666554 677899999999977544433346789999999999999988754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.1e-14 Score=129.18 Aligned_cols=117 Identities=11% Similarity=-0.034 Sum_probs=91.1
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC------------
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL------------ 262 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl------------ 262 (372)
.+.+.+.+.+....+ .+|||+|||+|..+.+|+++|. .|+|+|+|+.+|+.|+++..
T Consensus 32 ~l~~~~~~~l~~~~~--------~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~ 100 (229)
T d2bzga1 32 LLKKHLDTFLKGKSG--------LRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIP 100 (229)
T ss_dssp HHHHHHHHHHTTCCS--------CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTST
T ss_pred HHHHHHHHhcCCCCC--------CEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhccc
Confidence 344556566665555 7999999999999999999874 58999999999998887522
Q ss_pred ----------CeEEEEeeccCC-CCCCCCccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 263 ----------PAMIGNFISRQL-PYPSLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 263 ----------~~~~~~~d~~~l-p~~~~sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
.+.+.+.|...+ +...++||+|+...+++|+.+ +...+++++.++|||||++++......
T Consensus 101 ~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 101 GTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp TCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred ccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 344555555555 356789999999988888864 445799999999999999888876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-14 Score=134.54 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=80.3
Q ss_pred CeEEEeCCCCcHHHHHHHhc-----CCceeEEEEeeCCHHHHHHHHHc-----CCC-eE--EEEeecc------CCCCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-----KLMAVCVAVYEATGSQVQLALER-----GLP-AM--IGNFISR------QLPYPS 278 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-----~~~~~~v~gvD~s~~~v~~A~~r-----gl~-~~--~~~~d~~------~lp~~~ 278 (372)
.+|||||||+|.++..+++. ......++++|+|+.|++.|+++ .++ +. +...+.. ..++++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 47999999999998887653 12245689999999999999876 122 22 2222221 245778
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 279 LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 279 ~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++||+|+|.++++|+ +++..+|++++++|+|||+++++.+....
T Consensus 122 ~~fD~I~~~~~l~~~-~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp CCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred CceeEEEEccceecC-CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 999999999997776 77888999999999999999999876543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.4e-14 Score=134.90 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=82.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-----eE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-----AM 265 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-----~~ 265 (372)
.+.+.+.+.+....+ .+|||||||+|.++..|++++ ..|+|+|+|+.|++.|+++ +.. ..
T Consensus 43 ~~~~~l~~~l~~~~~--------~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~ 111 (292)
T d1xvaa_ 43 EYKAWLLGLLRQHGC--------HRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWV 111 (292)
T ss_dssp HHHHHHHHHHHHTTC--------CEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred HHHHHHHHHhhhcCC--------CEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccccccceee
Confidence 344555566654443 789999999999999999986 4599999999999998765 222 22
Q ss_pred EEEeecc----CCCCCCCCccEEEecc-cccccc------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 266 IGNFISR----QLPYPSLSFDMVHCAQ-CGIIWD------KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 266 ~~~~d~~----~lp~~~~sFDlV~~~~-~~~~~~------~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...++.. .+| +.++||+|+|.. ++.|+. ++...+|+++.++|||||+|++...+
T Consensus 112 ~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 112 IEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 3333322 223 346899999864 455653 23457999999999999999997653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=7.2e-15 Score=133.54 Aligned_cols=135 Identities=14% Similarity=-0.010 Sum_probs=93.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE---------------------------
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM--------------------------- 265 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~--------------------------- 265 (372)
..+|||||||+|.++..++..+ ...|+|+|+|+.|++.|+++ .....
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 3689999999999887777664 35799999999999998865 11110
Q ss_pred ----EEE----eeccCCCCCCCCccEEEeccccccccc---cHHHHHHHHHhcccCCeEEEEEeCCCCCC---CCCCcch
Q 017377 266 ----IGN----FISRQLPYPSLSFDMVHCAQCGIIWDK---KEGIFLIEADRLLKPGGYFVLTSPESKPR---GSSSSRK 331 (372)
Q Consensus 266 ----~~~----~d~~~lp~~~~sFDlV~~~~~~~~~~~---~~~~~L~el~rvLkPGG~lvis~p~~~~~---~~~~~~e 331 (372)
... .+....++++++||+|++.++++|... +...+++++.++|||||++++.++..... .......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 000 112234678899999999999888753 44579999999999999999998765431 0000001
Q ss_pred hhHHHHHHHHHHHhcCeeEEee
Q 017377 332 NKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 332 ~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.....+.++.+.++.+++++--
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEEE
Confidence 1112455677778889986543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.50 E-value=2.7e-13 Score=118.06 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=89.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGN 268 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~ 268 (372)
+....+...+...++ .+|||||||+|.++..++..+ ..|+++|+++.+++.|+++ ++ ++.+..
T Consensus 20 eir~~il~~l~~~~g--------~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~ 88 (186)
T d1l3ia_ 20 EVRCLIMCLAEPGKN--------DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88 (186)
T ss_dssp HHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE
Confidence 444567777777776 899999999999999998764 3689999999999988875 55 466777
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.++.+.+++...||+|++.....+ ...++.++.+.|||||++++...
T Consensus 89 gda~~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 89 GDAPEALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp SCHHHHHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CchhhcccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEEEee
Confidence 787777788899999999865333 35689999999999999998865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-14 Score=128.70 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----CCeEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~~ 269 (372)
..+.+.+++.+.. .+ .+|||||||+|.++..+++.+ ..+++++|+|+.+++.|+++. ..+.....
T Consensus 40 ~~~~~~la~~~~~-~g--------~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~ 108 (229)
T d1zx0a1 40 TPYMHALAAAASS-KG--------GRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG 108 (229)
T ss_dssp HHHHHHHHHHHTT-TC--------EEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcc-CC--------CeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccc
Confidence 4566666666553 33 689999999999999999874 357899999999999998763 22333333
Q ss_pred ec--cCCCCCCCCccEEEe-----ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 270 IS--RQLPYPSLSFDMVHC-----AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 270 d~--~~lp~~~~sFDlV~~-----~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+. ...++++++||.|+. .....|+ .+...+++++.|+|||||+|++..
T Consensus 109 ~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 109 LWEDVAPTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 234677899999873 4444444 566779999999999999998753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.47 E-value=2.9e-13 Score=123.53 Aligned_cols=103 Identities=24% Similarity=0.304 Sum_probs=78.6
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.++|||||||+|.++..++++.+. ..++++|+ +.+++.++++ ++ .+.+...|... +. ..+||+|++..++
T Consensus 81 ~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~vl 156 (253)
T d1tw3a2 81 VRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILSFVL 156 (253)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEESCG
T ss_pred CCEEEEeCCCCCHHHHHHHHhcce-eEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hc-ccchhheeecccc
Confidence 479999999999999999988643 56788998 4577766654 44 35666666543 23 3579999999998
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+||.++. ..+|++++++|||||.++|.+.....
T Consensus 157 h~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~ 190 (253)
T d1tw3a2 157 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLH 190 (253)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred ccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 8885433 46899999999999999998865433
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=9.5e-14 Score=127.18 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=87.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+. .++|+|+|+.+++.|+++ +++..+...+... ++++++||+|+++...
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~--- 194 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA--- 194 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH---
T ss_pred CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccc---
Confidence 7999999999999999888763 588999999999888764 7777776665543 3567899999997431
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.....++.++.++|||||++++++.... .-+.+.+..+..+|+.+..
T Consensus 195 -~~l~~l~~~~~~~LkpGG~lilSgil~~------------~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 195 -ELHAALAPRYREALVPGGRALLTGILKD------------RAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEEEEEEEGG------------GHHHHHHHHHHTTCEEEEE
T ss_pred -ccHHHHHHHHHHhcCCCcEEEEEecchh------------hHHHHHHHHHHCCCEEEEE
Confidence 2334588999999999999999876321 1234555567778887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=3.2e-13 Score=121.84 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=92.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccC-CCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQ-LPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++... ...|+|+|+|+.|++.++++. .+......+... .++.+..+|++++... +++
T Consensus 76 ~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~-~~~ 153 (230)
T d1g8sa_ 76 SKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED-VAQ 153 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC-CCS
T ss_pred CEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc-ccc
Confidence 8999999999999999998754 357999999999999888762 223333334333 2356677888777654 444
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.++...++.++.++|||||+++++.......... ......+...+..+..+++.+-.
T Consensus 154 ~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~---~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 154 PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK---DPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS---CHHHHHHHHHHHHHHHTEEEEEE
T ss_pred hHHHHHHHHHHHHhcccCceEEEEeeccccCCCC---CHHHHHHHHHHHHHHcCCEEEEE
Confidence 4777789999999999999999987544332222 22334445555557778887643
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=2e-13 Score=125.56 Aligned_cols=128 Identities=21% Similarity=0.196 Sum_probs=98.7
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------C--CCeEEEE
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------G--LPAMIGN 268 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------g--l~~~~~~ 268 (372)
+..+...+...++ .+|||+|||+|.++..|+..-.....++++|+++.+++.|+++ + .++.+..
T Consensus 85 ~s~Ii~~l~i~PG--------~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~ 156 (264)
T d1i9ga_ 85 AAQIVHEGDIFPG--------ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 156 (264)
T ss_dssp HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred HHHHHHHhCCCCC--------CEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence 4466777778777 8999999999999999998722345699999999999999874 1 2466777
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCe
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw 348 (372)
.|....++++++||.|++. + +++..++.++.++|||||.+++..|+. .+.+..++.+....+|
T Consensus 157 ~d~~~~~~~~~~fDaV~ld-----l-p~P~~~l~~~~~~LkpGG~lv~~~P~i-----------~Qv~~~~~~l~~~~~f 219 (264)
T d1i9ga_ 157 SDLADSELPDGSVDRAVLD-----M-LAPWEVLDAVSRLLVAGGVLMVYVATV-----------TQLSRIVEALRAKQCW 219 (264)
T ss_dssp SCGGGCCCCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEESSH-----------HHHHHHHHHHHHHSSB
T ss_pred cccccccccCCCcceEEEe-----c-CCHHHHHHHHHhccCCCCEEEEEeCcc-----------ChHHHHHHHHHHcCCe
Confidence 7888889999999999863 3 555569999999999999999998853 2344444555444455
Q ss_pred e
Q 017377 349 S 349 (372)
Q Consensus 349 ~ 349 (372)
.
T Consensus 220 ~ 220 (264)
T d1i9ga_ 220 T 220 (264)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=3.5e-13 Score=120.16 Aligned_cols=110 Identities=16% Similarity=0.067 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
......+.+.+...++ .+|||||||+|.++..|++.......|+++|+++.+++.|+++ ++ +..+..
T Consensus 61 P~~~a~~l~~l~l~~g--------~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~ 132 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC 132 (213)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred chhhHHHHHhhhcccc--------ceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc
Confidence 3455567778888777 8999999999999999987633446789999999999999876 44 355566
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.|....++.+++||+|++..++.+++ .++.+.|||||.+++..
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 133 GDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred CchHHccccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 67777777788999999998766653 24678899999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=2.9e-13 Score=120.39 Aligned_cols=101 Identities=19% Similarity=0.071 Sum_probs=74.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||+|||+|.++..+++.... ..|+|+|+|+.|++.|+++ .-++.+...+....+.+...+|.+.+.+...+..
T Consensus 58 ~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~ 136 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK 136 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCST
T ss_pred CEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccCh
Confidence 89999999999999999987533 4799999999999887654 2245566666666555555555554332223333
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...++.++.++|||||++++...
T Consensus 137 ~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 137 NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 5667799999999999999999864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.39 E-value=1.5e-12 Score=119.08 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.++|||||||+|.++..++++.+ ...++++|+ +.+++.|+++ ++. +.+...+... +.| .+||+|++.+++
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vL 157 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVL 157 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccc
Confidence 47899999999999999999864 467889997 6777776644 443 4555555433 444 469999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc-hhh-------------HHHHHHHHHHHhcCeeEEeee
Q 017377 291 IIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR-KNK-------------SLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 291 ~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~-e~~-------------~~w~~i~~l~~~lcw~~~~~~ 354 (372)
++|.++. ..+|++++++|||||.++|.+............ ... ...+++.++.+..+|+.+..+
T Consensus 158 h~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~ 236 (256)
T d1qzza2 158 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 236 (256)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred cccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEE
Confidence 9996433 468999999999999999988643221111000 000 012445667788898877543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=8.2e-13 Score=117.00 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=80.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC--CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP--YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp--~~~~sFDlV~~~~~~ 290 (372)
..|||||||+|.++..+++..+. ..++|+|+++.++..|.++ ++. +.+...|+..+. ++++++|.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp- 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence 47999999999999999998654 6799999999999776543 664 667777777765 88999999998865
Q ss_pred ccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 017377 291 IIWDKKE--------GIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 291 ~~~~~~~--------~~~L~el~rvLkPGG~lvis~ 318 (372)
.+|.... ..+|.++.|+|||||.|++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554322 358999999999999999975
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.1e-13 Score=121.67 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=96.5
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CC--e--------
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LP--A-------- 264 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~--~-------- 264 (372)
.+.+.+.++.+.. .+.+|||||||+|.+....+...+ ..|+++|+|+.|++.++++- .+ .
T Consensus 41 ~~~~~~~f~~g~~------~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~ 112 (263)
T d2g72a1 41 LRCLAQTFATGEV------SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQH 112 (263)
T ss_dssp HHHHHHHHHTSCS------CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHH
T ss_pred HHHHHHHcCCCCC------CCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhh
Confidence 3455555544332 347999999999988766555533 46999999999999887541 00 0
Q ss_pred -----------------------EEEEeecc------CCCCCCCCccEEEecccccccccc---HHHHHHHHHhcccCCe
Q 017377 265 -----------------------MIGNFISR------QLPYPSLSFDMVHCAQCGIIWDKK---EGIFLIEADRLLKPGG 312 (372)
Q Consensus 265 -----------------------~~~~~d~~------~lp~~~~sFDlV~~~~~~~~~~~~---~~~~L~el~rvLkPGG 312 (372)
.....|.. ..+++.++||+|++.+++++...+ ...+++++.++|||||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG 192 (263)
T d2g72a1 113 ACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGG 192 (263)
T ss_dssp HHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCC
Confidence 01111221 223556789999999998887644 4578999999999999
Q ss_pred EEEEEeCCCCCC---CCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 313 YFVLTSPESKPR---GSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 313 ~lvis~p~~~~~---~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
+|++.++..... .........-..+.+.+..+..+++++.
T Consensus 193 ~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 193 HLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp EEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 999988754431 0000001112345677777888988764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.33 E-value=5.4e-12 Score=111.61 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=79.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC--CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP--YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp--~~~~sFDlV~~~~~~ 290 (372)
..|||||||+|.++..+++..+. ..++|+|+++.++..|.++ ++. +.+...|+..+. +++.++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP- 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-
Confidence 47999999999999999998654 6699999999998776543 664 667777776665 78999999998754
Q ss_pred ccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 017377 291 IIWDKKE--------GIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 291 ~~~~~~~--------~~~L~el~rvLkPGG~lvis~ 318 (372)
..|.... ..+|..+.++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554321 358999999999999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.4e-12 Score=113.81 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=83.8
Q ss_pred HHHHHHHHH--ccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC------C
Q 017377 196 YSRQIAEMI--GLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL------P 263 (372)
Q Consensus 196 ~~~~l~~~l--~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl------~ 263 (372)
....+.+.+ ...++ .+|||||||+|..++.|++.......|+++|.++.+++.|+++ ++ .
T Consensus 62 ~~a~~le~L~~~l~~g--------~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~ 133 (224)
T d1i1na_ 62 MHAYALELLFDQLHEG--------AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR 133 (224)
T ss_dssp HHHHHHHHTTTTSCTT--------CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred HHHHHHHHHhhccCCC--------CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence 344566666 34444 7999999999999999987633446799999999999988764 22 3
Q ss_pred eEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 264 AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 264 ~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.+...|....+.++++||+|++..+..+.+ .++.+.|||||++++.....
T Consensus 134 ~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv~~~ 184 (224)
T d1i1na_ 134 VQLVVGDGRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPVGPA 184 (224)
T ss_dssp EEEEESCGGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEESCT
T ss_pred eEEEEeecccccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEEccC
Confidence 5566677777777888999999997765542 35778999999999976533
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=2e-12 Score=117.90 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=80.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----C-CCeEEEEeecc
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----G-LPAMIGNFISR 272 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----g-l~~~~~~~d~~ 272 (372)
.+...+.+.++ .+|||+|||+|.++..|+..-.....++++|.++.+++.|+++ + -++.+...|..
T Consensus 76 ~Ii~~l~i~pG--------~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~ 147 (250)
T d1yb2a1 76 YIIMRCGLRPG--------MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA 147 (250)
T ss_dssp -----CCCCTT--------CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT
T ss_pred HHHHHcCCCCc--------CEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 34555566666 8999999999999999997622345799999999999999875 1 13566666665
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+. +++++||+|++. . +++..++.++.++|||||++++..|..
T Consensus 148 ~~-~~~~~fD~V~ld-~-----p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 148 DF-ISDQMYDAVIAD-I-----PDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp TC-CCSCCEEEEEEC-C-----SCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred cc-cccceeeeeeec-C-----CchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 54 567899999874 2 344458999999999999999998843
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1.9e-11 Score=112.41 Aligned_cols=109 Identities=23% Similarity=0.200 Sum_probs=84.1
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEee
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFI 270 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d 270 (372)
+..+...+.+.++ .+|||+|||+|.++..|+........++++|.++.+++.|+++ ++. +.+...|
T Consensus 92 ~~~Ii~~l~i~pG--------~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d 163 (266)
T d1o54a_ 92 SSFIAMMLDVKEG--------DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD 163 (266)
T ss_dssp HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred HHHHHHhhCCCCC--------CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc
Confidence 3456777778777 8999999999999999998743456799999999999999875 442 3333333
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...++...||.|+. ++ +++..++.++.++|||||.+++..|.
T Consensus 164 ~-~~~~~~~~~D~V~~-----d~-p~p~~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 164 I-SEGFDEKDVDALFL-----DV-PDPWNYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp G-GGCCSCCSEEEEEE-----CC-SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred c-cccccccceeeeEe-----cC-CCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence 2 33567788998874 33 55566999999999999999999884
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=9.8e-12 Score=117.51 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=74.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.|. ..|+++|.|+ +++.|+ +++. .+.+...+..++++++++||+|++.....
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 7899999999999999988864 3688999997 444443 3344 36677788899999999999999975433
Q ss_pred ccc--ccHHHHHHHHHhcccCCeEEE
Q 017377 292 IWD--KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 292 ~~~--~~~~~~L~el~rvLkPGG~lv 315 (372)
+.. .....++.++.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 332 445678999999999999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.4e-12 Score=120.11 Aligned_cols=118 Identities=14% Similarity=0.034 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----------
Q 017377 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----------- 260 (372)
Q Consensus 192 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----------- 260 (372)
........+.+.+.+.++ .+|||||||+|.++..++.... ...++|+|+++.+++.|++.
T Consensus 135 ~~~~~~~~~~~~~~l~~~--------~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~ 205 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWY 205 (328)
T ss_dssp CCHHHHHHHHHHSCCCTT--------CEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCC--------CEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhc
Confidence 334566777777777776 7999999999999999887632 24688999999999887653
Q ss_pred ---CCCeEEEEeeccCCCCCCCCc--cEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 261 ---GLPAMIGNFISRQLPYPSLSF--DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 261 ---gl~~~~~~~d~~~lp~~~~sF--DlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..++.+..+|+..+++.+..| |+|+++ .+.++ ++...+|.++.++|||||.++...+.
T Consensus 206 g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~-~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 206 GKKHAEYTLERGDFLSEEWRERIANTSVIFVN-NFAFG-PEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp TCCCCCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTC-HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccCCceEEEECcccccccccccCcceEEEEc-ceecc-hHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 234678888888888776655 566665 44444 67778999999999999999987654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.5e-11 Score=115.30 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH---HHcCC--CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA---LERGL--PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A---~~rgl--~~~~~~~ 269 (372)
.|.+.+.+.....++ ++|||||||+|.++..+++.|. ..|+++|.|+.+...+ .+++. .+.+...
T Consensus 22 ~y~~ai~~~~~~~~~--------~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~ 91 (311)
T d2fyta1 22 SYRDFIYQNPHIFKD--------KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKG 91 (311)
T ss_dssp HHHHHHHHCGGGTTT--------CEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHhccccCCc--------CEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEe
Confidence 345555544444344 7899999999999999998864 3689999999887433 23343 3667778
Q ss_pred eccCCCCCCCCccEEEecccccccc--ccHHHHHHHHHhcccCCeEEE
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWD--KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~--~~~~~~L~el~rvLkPGG~lv 315 (372)
++.++++++++||+|++....++.. .....++....++|+|||+++
T Consensus 92 ~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 92 KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 8899999999999999974433332 234467888899999999987
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.24 E-value=2.1e-11 Score=109.42 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=74.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CC-CeEEEEeecc---CCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GL-PAMIGNFISR---QLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl-~~~~~~~d~~---~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..|++.-.....|+++|+++.+++.++++ .. .......+.. ..+.....+|+|++. .
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d---~ 151 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED---V 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC---C
T ss_pred CEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE---c
Confidence 8999999999999999998722346799999999999988765 22 2333333332 233445678988875 2
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+..++...++.++.++|||||+++++...
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 152 AQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 33356677999999999999999998643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=2e-11 Score=114.71 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=75.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHH---HHHHcCCC--eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ---LALERGLP--AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~---~A~~rgl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
++|||||||+|.++..+++.|. ..|+++|.++.+.. .++.+++. +.+...+..+++++.++||+|++......
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 7899999999999999998864 35889999986543 23334543 67778889999999999999999754333
Q ss_pred cc--ccHHHHHHHHHhcccCCeEEE
Q 017377 293 WD--KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 293 ~~--~~~~~~L~el~rvLkPGG~lv 315 (372)
.. .....++..+.|+|||||.++
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEE
Confidence 32 345679999999999999987
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.7e-11 Score=112.00 Aligned_cols=111 Identities=20% Similarity=0.124 Sum_probs=80.7
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------------
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--------------- 261 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--------------- 261 (372)
+..|...+.+.++ .+|||+|||+|.++..|+..-.....|+++|+++.+++.|+++-
T Consensus 87 ~~~Il~~l~i~pG--------~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~ 158 (324)
T d2b25a1 87 INMILSMMDINPG--------DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158 (324)
T ss_dssp HHHHHHHHTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred HHHHHHHhCCCCC--------CEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 3466777788877 89999999999999999986323457899999999999988641
Q ss_pred -CCeEEEEeeccCCC--CCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 262 -LPAMIGNFISRQLP--YPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 262 -l~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
-++.+...|..... +++.+||.|+.. + +++..++.++.++|||||.|++..|..
T Consensus 159 ~~nv~~~~~di~~~~~~~~~~~fD~V~LD-----~-p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 159 PDNVDFIHKDISGATEDIKSLTFDAVALD-----M-LNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CCCEEEEESCTTCCC-------EEEEEEC-----S-SSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ccceeEEecchhhcccccCCCCcceEeec-----C-cCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 13445555554443 467889999863 2 334458999999999999999998843
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.19 E-value=4.9e-11 Score=106.78 Aligned_cols=105 Identities=17% Similarity=0.083 Sum_probs=80.4
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeecc
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISR 272 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~ 272 (372)
....+.+.+...++ .+|||||||+|.+++.|++.. ..|+++|+++.+++.|+++ ..++.+...|..
T Consensus 58 ~~a~ml~~L~l~~g--------~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~ 126 (224)
T d1vbfa_ 58 LGIFMLDELDLHKG--------QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGT 126 (224)
T ss_dssp HHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGG
T ss_pred hHHHHHHHhhhccc--------ceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchh
Confidence 34456777777777 899999999999999988874 4588999999999999876 234566666655
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
....+.++||.|++..+..+.+ ..+.+.|+|||++++-.
T Consensus 127 ~g~~~~~pfD~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 127 LGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hcchhhhhHHHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 4444567899999987765542 34567899999999854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=5.8e-11 Score=114.95 Aligned_cols=122 Identities=10% Similarity=0.044 Sum_probs=85.4
Q ss_pred ccc-cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----
Q 017377 188 LVF-DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----- 261 (372)
Q Consensus 188 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----- 261 (372)
..| +.....+..+.+.+.+.++ .+|||||||+|.++..++.... ...++|+|+++.|++.|+++.
T Consensus 195 ~vYGEl~~~~i~~Il~~l~Lkpg--------d~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~ 265 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQLKKG--------DTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKK 265 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTCCTT--------CEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhCCCCC--------CEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhh
Confidence 566 4445678888888888887 8999999999999999987621 246899999999999887641
Q ss_pred ------CC---eEEE-EeeccCCCCC---CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 262 ------LP---AMIG-NFISRQLPYP---SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 262 ------l~---~~~~-~~d~~~lp~~---~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.. ..+. ..+....++. -..+|+|+++. .. +.++...+|.++.|+|||||.++.+.+.
T Consensus 266 ~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~-f~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 266 RCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FL-FDEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp HHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TT-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred hhhhhccccccceeeeeechhhccccccccccceEEEEec-cc-CchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 21 1111 1111111111 12467888763 33 3477778999999999999999887643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.98 E-value=8.6e-10 Score=97.89 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=82.7
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|..++.|+... ...++++|.++.+++.|+++ ++ ++.+...
T Consensus 65 ~~~a~ml~~L~l~~g--------~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g 134 (215)
T d1jg1a_ 65 HMVAIMLEIANLKPG--------MNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILG 134 (215)
T ss_dssp HHHHHHHHHHTCCTT--------CCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhHHHHHHhhccCcc--------ceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC
Confidence 345677788888777 899999999999999988761 13478899999999988865 44 4667777
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|......+.+.||.|++..+..+.++ .+...|+|||++++...
T Consensus 135 d~~~g~~~~~pfD~Iiv~~a~~~ip~-------~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 135 DGSKGFPPKAPYDVIIVTAGAPKIPE-------PLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSCCH-------HHHHTEEEEEEEEEEEC
T ss_pred ccccCCcccCcceeEEeecccccCCH-------HHHHhcCCCCEEEEEEc
Confidence 77665566789999999877655422 24567999999998654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=7.5e-10 Score=98.84 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=80.0
Q ss_pred HHHHHHHHH--ccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc----C-CceeEEEEeeCCHHHHHHHHHc--------
Q 017377 196 YSRQIAEMI--GLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL----K-LMAVCVAVYEATGSQVQLALER-------- 260 (372)
Q Consensus 196 ~~~~l~~~l--~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~----~-~~~~~v~gvD~s~~~v~~A~~r-------- 260 (372)
....+.+.+ ...++ .+|||||||+|.+++.|++. + .....|+++|.++.+++.|+++
T Consensus 66 ~~a~~l~~L~~~l~~g--------~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~ 137 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPG--------ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 137 (223)
T ss_dssp HHHHHHHHTTTTCCTT--------CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccCCC--------CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence 344566665 34454 79999999999999888765 1 1234689999999999988764
Q ss_pred -C-CCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 -G-LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 -g-l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+ -++.+...|......+.+.||.|++..+..+.+ ..+.+.|+|||++++...
T Consensus 138 ~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 138 LDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp HHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred cCccEEEEEecccccccccccceeeEEEEeechhch-------HHHHHhcCCCcEEEEEEe
Confidence 1 145666677766666678999999987755442 246789999999998654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=3.9e-09 Score=96.87 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=84.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
+.+|||+|||+|..+..++.... ...++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+|+--.+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 36899999999999999988754 36799999999999998876 553 5666555432 45678999999982211
Q ss_pred c------------cc------------ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 017377 292 I------------WD------------KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (372)
Q Consensus 292 ~------------~~------------~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lc 347 (372)
. +. .....++.+..++|+|||.+++..... . ...+..+++..+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~-q------------~~~v~~~l~~~g 253 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-Q------------GEAVRQAFILAG 253 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-C------------HHHHHHHHHHTT
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch-H------------HHHHHHHHHHCC
Confidence 1 10 011357888999999999999964321 1 245566777777
Q ss_pred eeE
Q 017377 348 WSL 350 (372)
Q Consensus 348 w~~ 350 (372)
|..
T Consensus 254 f~~ 256 (274)
T d2b3ta1 254 YHD 256 (274)
T ss_dssp CTT
T ss_pred CCe
Confidence 753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.86 E-value=5.9e-09 Score=97.74 Aligned_cols=101 Identities=23% Similarity=0.167 Sum_probs=74.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC----CCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ----LPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~----lp~~~~sFDlV~~~~ 288 (372)
.+|||++||+|.++..++.. ...|+++|+|+.+++.|+++ |+. +.+...|..+ ++...++||+|++.-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 78999999999999988753 36799999999999988765 664 5566665433 344567999999852
Q ss_pred ccccc--------cccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 289 CGIIW--------DKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 289 ~~~~~--------~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
-...- ..+...++..+.++|+|||.+++++...
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 11111 1122357888999999999999987644
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.86 E-value=1.2e-08 Score=88.74 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=69.2
Q ss_pred CeEEEeCCCCcHH----HHHHHhc---CCceeEEEEeeCCHHHHHHHHHc--------CCC----------------e--
Q 017377 218 QSVLDVGCGFGSF----GAHLVSL---KLMAVCVAVYEATGSQVQLALER--------GLP----------------A-- 264 (372)
Q Consensus 218 ~~VLDIGCG~G~~----~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~r--------gl~----------------~-- 264 (372)
-+|+++|||+|.- +..+.+. ......|.|.|+++.+++.|++- +++ .
T Consensus 26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~ 105 (193)
T d1af7a2 26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 105 (193)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcccee
Confidence 6899999999973 3334432 12346799999999999999742 111 0
Q ss_pred ----------EEEEeecc-CCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 017377 265 ----------MIGNFISR-QLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 265 ----------~~~~~d~~-~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis 317 (372)
.+...+.. ..+.+.+.||+|+|.++++.+.++. ..++..+.+.|+|||+|++.
T Consensus 106 ~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 106 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01111111 1223457899999999988886443 47999999999999998876
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.77 E-value=9.3e-09 Score=92.81 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+.++|||||||+|.++..++++.+. ..++..|. +..++.+.. .-.+.+...|..+ +.| ..|++++.+++++|.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~~~~-~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPP-LSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD 154 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC-CTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecc-hhhhhccCC-CCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence 3479999999999999999998654 56788897 444432221 1134555555432 444 3599999999999964
Q ss_pred cH-HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 296 KE-GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 296 ~~-~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+. ..+|+++++.|+|||.++|.+...
T Consensus 155 e~~~~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 155 EKCIEFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 43 468999999999999999988643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=2.1e-08 Score=94.08 Aligned_cols=102 Identities=21% Similarity=0.115 Sum_probs=74.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC----CCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ----LPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~----lp~~~~sFDlV~~~ 287 (372)
.+|||+|||+|.++..++..+. ..|+++|+++.+++.|+++ |+. +.+...|+.+ ++...++||+|++.
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 7899999999999999998864 3689999999999988765 553 4555555432 33456789999985
Q ss_pred ccccccc--------ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 288 QCGIIWD--------KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 288 ~~~~~~~--------~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
--...-. .+...++....++|+|||.+++++...
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 2211111 112347888899999999999987644
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.2e-08 Score=90.07 Aligned_cols=132 Identities=12% Similarity=0.115 Sum_probs=89.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++++. ..|+++|+++.+++.++++ ++. +.+.+.|+..++. .+.||.|+++.-
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-- 183 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-- 183 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC--
Confidence 7899999999999999998853 4689999999999888765 553 5666777777653 578999998632
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEec
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKT 363 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~ 363 (372)
.....++.++.++|+|||.+.+........ ......+.+..++...++++.......+-+-.|
T Consensus 184 ---~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~------~~~~~~e~~~~~~~~~g~~v~~~~~~~Vk~yaP 246 (260)
T d2frna1 184 ---VRTHEFIPKALSIAKDGAIIHYHNTVPEKL------MPREPFETFKRITKEYGYDVEKLNELKIKRYAP 246 (260)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETT
T ss_pred ---CchHHHHHHHHhhcCCCCEEEEEecccccc------chhhHHHHHHHHHHHcCCceEEEEEEEEECcCC
Confidence 122247888899999999997765422210 011123445566677777765444333333334
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.75 E-value=1.8e-08 Score=85.99 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=67.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccC----CCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQ----LPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~----lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++.++. .++++|.++.+++.++++ ++...+...+... ......+||+|++.--
T Consensus 43 ~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 43 GRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 6899999999999999888874 466899999999988765 6655544433321 2345678999998632
Q ss_pred cccccccHHHHHHHH--HhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEA--DRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el--~rvLkPGG~lvis~p~ 320 (372)
++. +....+.++ ..+|+|||++++..+.
T Consensus 120 -Y~~--~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 120 -YAM--DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp -TTS--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred -ccc--CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 222 112233333 3589999999997653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=2.6e-08 Score=86.61 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=86.4
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeec
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFIS 271 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~ 271 (372)
..+++.+.+...++ ..+||++||+|..+..+++... ...++++|.++.|++.|+++ +-.+.+...+.
T Consensus 11 ll~evi~~l~~~~~--------~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f 81 (192)
T d1m6ya2 11 MVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY 81 (192)
T ss_dssp THHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG
T ss_pred HHHHHHHhhCCCCC--------CEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhccccccccchhHHH
Confidence 45677788877666 7999999999999999999854 46799999999999999986 33456665544
Q ss_pred cCC-----CCCCCCccEEEecccccc--cc------ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 272 RQL-----PYPSLSFDMVHCAQCGII--WD------KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 272 ~~l-----p~~~~sFDlV~~~~~~~~--~~------~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+ .+..++||.|+...++-. +. ......|..+.++|+|||.+++...
T Consensus 82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 433 244678999987644311 11 2234689999999999999998865
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.72 E-value=3.1e-08 Score=86.37 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=56.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
++|||+|||+|.++..++..+. ..|+++|+++.+++.|+++...+.+.+.|..+++ +.||+|+++
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 7999999999999988888764 3689999999999999998777788877877654 679999998
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=2.5e-07 Score=80.68 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=54.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ +....+...|...+ ++.||+|+++--
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP 118 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPP 118 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCC
T ss_pred CEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCc
Confidence 7899999999999998888764 4689999999999999875 55666776666554 467999999843
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.66 E-value=2.5e-08 Score=83.29 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=70.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..++.+|. ..++++|.++.+++.++++ ++. +.+...|+.. ++...++||+|++.--
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP- 92 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP- 92 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred CeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence 7899999999999999998875 4789999999999887765 433 4555555544 3456789999998621
Q ss_pred ccccccHHHHHHHH--HhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEA--DRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el--~rvLkPGG~lvis~p~ 320 (372)
+.. ......+..+ .++|+|||.+++..+.
T Consensus 93 y~~-~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 93 YAK-ETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hcc-chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 111 1122345544 3679999999998653
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=3.7e-08 Score=86.99 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC-C-----CCCCCccE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL-P-----YPSLSFDM 283 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l-p-----~~~~sFDl 283 (372)
++++|||||||+|..+..|++.-.....++++|.++.+++.|+++ |+. +.+..+++.+. | +..++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 347999999999999999987633446799999999999888654 553 55555554332 2 45678999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 284 V~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|+.... ... ......+.+..++|||||++++.+
T Consensus 136 ifiD~~-~~~-~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 136 VFLDHW-KDR-YLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEECSC-GGG-HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeccc-ccc-cccHHHHHHHhCccCCCcEEEEeC
Confidence 998632 111 112235778889999999877654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.60 E-value=9.4e-08 Score=89.30 Aligned_cols=102 Identities=11% Similarity=0.080 Sum_probs=73.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccC----CCCCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQ----LPYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~----lp~~~~sFDlV~~ 286 (372)
++|||+.||+|.++..++..+. ..|+++|+|+.+++.|+++ ++. +.+...|+.+ +.-..++||+|++
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 7899999999999998887653 4588999999999988765 553 4566665532 1224578999998
Q ss_pred ccc--------cccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 287 AQC--------GIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 287 ~~~--------~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.-- ......+...++..+.++|+|||.+++++...
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 411 11111233468888999999999999987643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.52 E-value=1.4e-07 Score=84.89 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+..+|||||||+|.++..++++.+. .+++..|. +..++.+.. .-.+.+...|... +.+ .+|++++.+++++|.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred CceEEEEecCCccHHHHHHHHhCCC-CeEEEecC-HHHHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCCh
Confidence 4578999999999999999998654 56888998 444544322 1235566666543 333 5799999999999965
Q ss_pred cH-HHHHHHHHhcccCC---eEEEEEeCCC
Q 017377 296 KE-GIFLIEADRLLKPG---GYFVLTSPES 321 (372)
Q Consensus 296 ~~-~~~L~el~rvLkPG---G~lvis~p~~ 321 (372)
+. ..+|+++++.|+|| |.++|.+...
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~~ 183 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDMVI 183 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence 44 46899999999998 7788877543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.46 E-value=3.3e-07 Score=84.95 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=71.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC----CCCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL----PYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l----p~~~~sFDlV~~ 286 (372)
.+|||+.||+|.++..++..+ ..|+++|.|+.+++.|+++ ++. +.+...|+... ....+.||+|++
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 789999999999999998876 3588999999999999875 443 55665554322 123578999998
Q ss_pred c---cc----cccc--cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 A---QC----GIIW--DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~---~~----~~~~--~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. +. ...+ ..+...++..+.++|+|||.+++.+..
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 4 11 0112 123345677789999999987666543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.5e-07 Score=81.79 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=73.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-----CCCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-----YPSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-----~~~~sFDlV 284 (372)
+++|||||||+|..+..+++.-.....++.+|.++...+.|++. |+. +.+..+++.. ++ ...++||+|
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 47999999999999999997633346799999999999888765 443 4455444322 11 246789999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+... ........+..+.++|+|||.+++....
T Consensus 140 fiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 140 VVDA----DKENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp EECS----CSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 9863 2244456788899999999999997553
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.36 E-value=3.6e-07 Score=81.90 Aligned_cols=100 Identities=18% Similarity=0.084 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+.++|||||||+|.++..++++.+. ..++..|..+. ++.+.+ ...+.+...|... +.|. .|.++...++++|.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v-i~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHV-IEDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSD 154 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTT-TTTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHh-hhhccc-CCceEEecccccc-cCCC--cceEEEEEEeecCCH
Confidence 3478999999999999999998644 56788998543 333222 2234555445432 4443 477777888888863
Q ss_pred c-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 296 K-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 296 ~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+ ...+|+++++.|+|||.++|.+...
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~~~ 181 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAECIL 181 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence 3 3479999999999999999987643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.36 E-value=1.9e-06 Score=80.20 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=73.8
Q ss_pred CeEEEeCCCCcHHHHHHHhc----CCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~----~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~ 289 (372)
.+|||.|||+|.+...+.++ ......++|+|+++.+++.|+.+ +........+... ..+.+.||+|+++--
T Consensus 119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi~NPP 197 (328)
T d2f8la1 119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLP 197 (328)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECC
T ss_pred CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccccCCC
Confidence 68999999999998887642 34456799999999999888754 5555555544332 345678999999833
Q ss_pred ccccc----------------cc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 290 GIIWD----------------KK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~----------------~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..... .+ ...++..+.+.|+|||++++..|..
T Consensus 198 y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 198 VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 21110 01 1236888999999999999988854
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.7e-05 Score=71.00 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
..|...+.+.+..... ......+|||||||+|..+..|+.+. ....++|+|+++.+++.|+++ ++. +.+.
T Consensus 42 ~~~~~~i~~l~~~~~~---~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDS---DKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCCG---GGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhcc---CccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeee
Confidence 3456666666543221 12234689999999999999998774 346799999999999999876 443 3333
Q ss_pred EeeccCC------CCCCCCccEEEeccc
Q 017377 268 NFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 268 ~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
..+.... ...+++||+|+|+--
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPP 145 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPP 145 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCC
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCc
Confidence 3222111 134578999999843
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=2.7e-06 Score=72.75 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=69.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC-CCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||++||+|.++..++++|.. .++.+|.+..+++.++++ +. +..+...|+.. +......||+|++.-- +
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP-Y 121 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP-F 121 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-S
T ss_pred hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCc-c
Confidence 68999999999999999999863 578899999999887764 33 24444444332 3345678999999632 1
Q ss_pred cccccHHHHHHHHH--hcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEAD--RLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~--rvLkPGG~lvis~p 319 (372)
.. .....++..+. .+|+|+|.+++...
T Consensus 122 ~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 122 RR-GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp ST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cc-chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 11 22334555554 47999999999754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=1.5e-06 Score=79.01 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=65.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp~~~~sFDlV~~~~~~ 290 (372)
.+|+|+|||+|..+..+++. ....++++|+|+.+++.|+++ ++. ..+...+... ++...+.||+|+||--.
T Consensus 112 ~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp CEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred cEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 68999999999999888865 346799999999999998875 443 3333333222 22233689999998110
Q ss_pred cc----------cc--------ccHHHHHHH-HHhcccCCeEEEEEeC
Q 017377 291 II----------WD--------KKEGIFLIE-ADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~----------~~--------~~~~~~L~e-l~rvLkPGG~lvis~p 319 (372)
+. +. ++.-.++++ +.+.|+|||++++...
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 00 00 111122222 5678999999988754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.28 E-value=2.8e-06 Score=72.64 Aligned_cols=118 Identities=17% Similarity=0.072 Sum_probs=80.2
Q ss_pred cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--Ce
Q 017377 191 DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PA 264 (372)
Q Consensus 191 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~ 264 (372)
...+..-+.+..++.... ...+|||++||+|.++..++.+|. ..++.+|.++.+++.++++ +. .+
T Consensus 23 Pt~~~vrealFn~l~~~~-------~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~ 93 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYF-------DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKF 93 (182)
T ss_dssp CCCHHHHHHHHHHHCSCC-------SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGE
T ss_pred cCcHHHHHHHHHHHHHhc-------CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 333455556667775322 127899999999999999999985 3688899999999988765 33 34
Q ss_pred EEEEeeccC----CCCCCCCccEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeC
Q 017377 265 MIGNFISRQ----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSP 319 (372)
Q Consensus 265 ~~~~~d~~~----lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~--rvLkPGG~lvis~p 319 (372)
.+...|+.. +.-....||+|++.-- +.. .+....+..+. .+|+|||.+++...
T Consensus 94 ~i~~~D~~~~l~~~~~~~~~fDlIflDPP-Y~~-~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 94 EVRKMDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccchhhhhhhcccCCCcceEEechh-hhh-hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 555555432 1124568999998621 111 33345666664 47999999998754
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.27 E-value=1.4e-06 Score=79.55 Aligned_cols=103 Identities=14% Similarity=0.038 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------------CCeEEEEeeccCCCCCCCC
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------------LPAMIGNFISRQLPYPSLS 280 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------------l~~~~~~~d~~~lp~~~~s 280 (372)
.+++||-||+|.|..+..+++... ..++.+|+++..++.|++.. ..+.+...|+...--.+++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCceEEEecCCchHHHHHHHHhCC--ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 458999999999999999887754 46888999999999998631 2345555554322113578
Q ss_pred ccEEEeccccccccccH----HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 281 FDMVHCAQCGIIWDKKE----GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 281 FDlV~~~~~~~~~~~~~----~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
||+|++-.. ....... ..+++.+++.|+|||.++.....+
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 999998522 2222111 358999999999999999876433
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=5.5e-07 Score=78.50 Aligned_cols=113 Identities=23% Similarity=0.174 Sum_probs=76.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL 274 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l 274 (372)
...+.+.+.+....+ .+|||.|||+|.|...+.+.......+.|+|+++..+..+. ...+...+....
T Consensus 6 ~i~~~m~~l~~~~~~--------~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~ 73 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRG--------GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHCCCCTT--------CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCc--------CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhcc
Confidence 345667777665554 79999999999999888876455567999999987653322 233444443333
Q ss_pred CCCCCCccEEEecccccccc---------------------------c-cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 275 PYPSLSFDMVHCAQCGIIWD---------------------------K-KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 275 p~~~~sFDlV~~~~~~~~~~---------------------------~-~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ....||+|+++--..... . -...++....+.|+|||++++..|.
T Consensus 74 ~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 74 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred c-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 3 457899999973322110 0 0124567888999999999999875
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.17 E-value=1.9e-06 Score=76.38 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=73.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC------CCCCCccE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP------YPSLSFDM 283 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp------~~~~sFDl 283 (372)
+++|||||+++|..+..+++.-.....++.+|.++...+.|++. |.. +.+...++.. ++ ...++||+
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~ 139 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 139 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence 47999999999999999997644456789999999999888764 543 4454444321 11 13568999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 284 V~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|+.-. +.......+..+.++|+|||.+++...
T Consensus 140 iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 140 IFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp EEECS----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred EEecc----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 99863 234445688889999999999998754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.15 E-value=3.9e-06 Score=74.69 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d 270 (372)
...++.+.+.+....+ .+|||||||+|.+|..|++.+ ..++++|+++.+++..+++.. ++.+...|
T Consensus 7 ~~i~~~iv~~~~~~~~--------d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D 75 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEH--------DNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKD 75 (235)
T ss_dssp HHHHHHHHTTCCCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCC
T ss_pred HHHHHHHHHhcCCCCC--------CeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhh
Confidence 3456667776666555 899999999999999999875 458999999999999887643 46788888
Q ss_pred ccCCCCCCCCccEEEec
Q 017377 271 SRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~ 287 (372)
+..++++......|+++
T Consensus 76 ~l~~~~~~~~~~~vv~N 92 (235)
T d1qama_ 76 ILQFKFPKNQSYKIFGN 92 (235)
T ss_dssp GGGCCCCSSCCCEEEEE
T ss_pred hhhccccccccceeeee
Confidence 88888776655567766
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.14 E-value=5.3e-06 Score=76.92 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----------CCeEEEEeeccCC-CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------LPAMIGNFISRQL-PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----------l~~~~~~~d~~~l-p~~~~sFDlV 284 (372)
.+++||.||.|.|..+..+++.. ....++.+|+++..++.|++.- ..+.+...|+... .-.+++||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45899999999999999988764 3467999999999999988641 2345554444321 2235789999
Q ss_pred Eeccccccccc-------cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 285 HCAQCGIIWDK-------KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 285 ~~~~~~~~~~~-------~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++... ..+.. ....+++.+.+.|+|||.++.....
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 97521 11211 1135899999999999999986543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.04 E-value=8e-07 Score=79.80 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
...++.+.+.+...++ .+|||||||+|.+|..|++.+ ..++++|+++.+++.++++. .++.+.+.|
T Consensus 15 ~~ii~kIv~~~~~~~~--------d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D 83 (245)
T d1yuba_ 15 EKVLNQIIKQLNLKET--------DTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQD 83 (245)
T ss_dssp TTTHHHHHHHCCCCSS--------EEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSC
T ss_pred HHHHHHHHHhcCCCCC--------CeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhh
Confidence 3456678888776665 789999999999999999885 45889999999998877663 246677788
Q ss_pred ccCCCCCCCCccEEEecccccccc
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+.+++++...++.|+++.- ++..
T Consensus 84 ~l~~~~~~~~~~~vv~NLP-Y~Is 106 (245)
T d1yuba_ 84 ILQFQFPNKQRYKIVGNIP-YHLS 106 (245)
T ss_dssp CTTTTCCCSSEEEEEEECC-SSSC
T ss_pred hhccccccceeeeEeeeee-hhhh
Confidence 8888888888888888743 5553
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.03 E-value=2.6e-05 Score=71.34 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEEeeccC-C-CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQ-L-PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------gl~~~~~~~d~~~-l-p~~~~sFDlV 284 (372)
.+++||=||-|.|..+..+++.. ....++.+|+++..++.|++- ...+.+...|+.. + ..++++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 56899999999999999998863 335789999999999999864 2334455444322 1 2345789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+.-.. ...... ...+++.+++.|+|||.++.......
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 98522 222111 13589999999999999999876543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=1.8e-05 Score=72.51 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||-||.|.|..+..+++.. ....|+.+|+++.+++.|++.. ..+.+...|+.. +.-.++.||+|+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45899999999999999998764 3467899999999999988641 234444444322 222357899999
Q ss_pred ecccccccc-c----cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 286 CAQCGIIWD-K----KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 286 ~~~~~~~~~-~----~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+... .... + ....+++.+++.|+|||.++.....+
T Consensus 168 ~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 168 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 8522 2221 1 12368999999999999999986654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=5.6e-05 Score=68.90 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||-||-|.|..+..+++.. ....++.+|+++..++.|++.- ..+.+...|+.. +.-..++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45899999999999999998763 3467889999999999998642 234555444322 112357899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 286 CAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 286 ~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+-. ....... ...+++.+++.|+|||.+++.....
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 862 2222111 1257999999999999999986544
|
| >d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Putative DNA-binding domain superfamily: Putative DNA-binding domain family: DNA-binding N-terminal domain of transcription activators domain: Multidrug transporter activator MtaN species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=5.1e-07 Score=70.85 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.=+|.++|++..|+=|||+.|++.. .|-.||||.|+++++.+|..|..|..-|. ++++-.
T Consensus 5 I~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sl~eI~ 66 (109)
T d1r8da_ 5 VKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGF---RLDEIK 66 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTC---CHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCcCCcccCCcccccccHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 34588999999999999999999984 68889999999999999999999887777 455443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=0.0001 Score=62.64 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=80.5
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-eEEEEeeccCC
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-AMIGNFISRQL 274 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-~~~~~~d~~~l 274 (372)
..+++.+.+...++ ..++|..+|.|..+..+++.+ ..|+|+|.++.+++.|+++..+ +.+.......+
T Consensus 6 ll~Evl~~l~~~~g--------~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 6 LYQEALDLLAVRPG--------GVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHL 74 (182)
T ss_dssp THHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGH
T ss_pred HHHHHHHhcCCCCC--------CEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHH
Confidence 34566677776666 789999999999999999975 4689999999999999876332 34443332222
Q ss_pred C-----CCCCCccEEEecccccccc-c-------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 275 P-----YPSLSFDMVHCAQCGIIWD-K-------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 275 p-----~~~~sFDlV~~~~~~~~~~-~-------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. +..+.+|.|+...++-.+. + .....|.....+|+|||.+++...
T Consensus 75 ~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 75 KRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1 3356799999864433221 1 122468888999999999999876
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=8.1e-05 Score=64.62 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=71.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|+|||+|.|.-|..++-..+ ...++.+|.+..-+.+.+ +.++. +.+.+..++.+. .+.+||+|+|..+
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~--- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS---
T ss_pred CceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh---
Confidence 6899999999999999887643 367899999987776544 34764 666665666554 3568999998643
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...++.-+.+.+++||.+++.--
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3445688888999999999998743
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.85 E-value=4.2e-05 Score=69.33 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||-||-|.|..+..+++.. ....++.+|+++..++.|++.. ..+.+...|+.. +.-.+++||+|+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45899999999999999998763 2357889999999999987641 234454444322 222457899999
Q ss_pred eccccccccc----cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 286 CAQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 286 ~~~~~~~~~~----~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.-.. ..... ....+++.+++.|+|||.++.....+
T Consensus 154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 8522 22211 12358999999999999999886544
|
| >d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Putative DNA-binding domain superfamily: Putative DNA-binding domain family: DNA-binding N-terminal domain of transcription activators domain: Transcriptional regulator CueR species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=6.8e-07 Score=72.07 Aligned_cols=56 Identities=20% Similarity=0.013 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRP 83 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~ 83 (372)
.=||-++|++..|+=|||+.|++.. .|..||||.|++.++.+|..|..+...|...
T Consensus 4 ge~A~~~gvs~~TlR~Ye~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl 60 (127)
T d1q06a_ 4 SDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60 (127)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCCCccCCcCcccchHHHHHHHHHHHHHHHcCCCH
Confidence 3478899999999999999999985 5889999999999999999999998888744
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.83 E-value=4.5e-05 Score=70.33 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=71.5
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||-||.|.|..+..+++.. ....++.+|+++..++.|++-- ..+.+...|+.. +.-..++||+|+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45899999999999999998864 3467899999999999998752 123344333321 112357899999
Q ss_pred eccccccccc----cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 286 CAQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 286 ~~~~~~~~~~----~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+-.. ..... ....+++.+++.|+|||.++......
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 8522 22111 11357899999999999999986544
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.81 E-value=8.5e-05 Score=68.52 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=89.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~ 273 (372)
.....+...++ .+|||+.||.|.=+..+++.......+++.|.++.-++...++ ++. +.....|...
T Consensus 107 l~~~~l~~~~g--------~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~ 178 (313)
T d1ixka_ 107 YPPVALDPKPG--------EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 178 (313)
T ss_dssp HHHHHHCCCTT--------CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred chhhcccCCcc--------ceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccc
Confidence 34455555555 7999999999998888877644456688999999888665543 554 4445555566
Q ss_pred CCCCCCCccEEEec------cccc-----c--ccc-c-------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchh
Q 017377 274 LPYPSLSFDMVHCA------QCGI-----I--WDK-K-------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKN 332 (372)
Q Consensus 274 lp~~~~sFDlV~~~------~~~~-----~--~~~-~-------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~ 332 (372)
++..+..||.|++- +.+. . +.. + ...+|....+.|||||+++.++...... |.
T Consensus 179 ~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e------EN 252 (313)
T d1ixka_ 179 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------EN 252 (313)
T ss_dssp GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------GT
T ss_pred cccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH------hH
Confidence 66667889999872 1110 1 111 1 1246888999999999999999876552 22
Q ss_pred hHHHHHHHHHHHhcCeeEE
Q 017377 333 KSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 333 ~~~w~~i~~l~~~lcw~~~ 351 (372)
+ ..++.+.++..++++
T Consensus 253 E---~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 253 E---FVIQWALDNFDVELL 268 (313)
T ss_dssp H---HHHHHHHHHSSEEEE
T ss_pred H---HHHHHHHhcCCCEEe
Confidence 1 334555566666655
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.74 E-value=0.00013 Score=61.85 Aligned_cols=99 Identities=19% Similarity=0.134 Sum_probs=68.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeec---cCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFIS---RQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~---~~lp~~~~sFDlV~~~ 287 (372)
.+|||+-||+|.++...+++|.. .++.+|.+...++..+++ +.. ..+...+. .........||+|++.
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 68999999999999999999864 578899999999877765 332 33333222 2223445679999986
Q ss_pred cccccccccHHHHHHHHH--hcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~--rvLkPGG~lvis~p~ 320 (372)
-- +.. .....++..+. .+|+++|.+++..+.
T Consensus 123 PP-Y~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 123 PP-FHF-NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp CC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred hh-Hhh-hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 22 221 22334566554 479999999997653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=9.4e-05 Score=69.03 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=76.7
Q ss_pred cccccch----hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--
Q 017377 187 GLVFDGV----KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-- 260 (372)
Q Consensus 187 ~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-- 260 (372)
..+|+.. +.+++.+.+++....+ .+|||+-||+|.|+..|++.. ..|+|+|.++.+++.|+++
T Consensus 187 ~sFfQ~N~~~~e~l~~~v~~~~~~~~~--------~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~ 255 (358)
T d1uwva2 187 RDFIQVNAGVNQKMVARALEWLDVQPE--------DRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNAR 255 (358)
T ss_dssp SSCCCSBHHHHHHHHHHHHHHHTCCTT--------CEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHH
T ss_pred chhhccchhhhhHHHHHHHHhhccCCC--------ceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHH
Confidence 4466533 3456666666665444 789999999999999998764 4689999999999988765
Q ss_pred --CCC-eEEEEeeccC----CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 --GLP-AMIGNFISRQ----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 --gl~-~~~~~~d~~~----lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++. +.+...+... .+.....||+|+..--.-.. ..++..+.+ ++|.-.+++|..
T Consensus 256 ~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~----~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 256 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA----AGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp HTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC----HHHHHHHHH-HCCSEEEEEESC
T ss_pred hcccccceeeecchhhhhhhhhhhhccCceEEeCCCCccH----HHHHHHHHH-cCCCEEEEEeCC
Confidence 554 4555554433 22335679999875221111 135555554 367777777743
|
| >d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Putative DNA-binding domain superfamily: Putative DNA-binding domain family: DNA-binding N-terminal domain of transcription activators domain: Transcription activator BmrR species: Bacillus subtilis [TaxId: 1423]
Probab=97.63 E-value=1.5e-06 Score=68.96 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcccccccceeccCCC--CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK--PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|++..|+=|||+.|++.. .|-.||||.|++.|+.+|..|..+..-|. ++++...
T Consensus 7 ~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g~---sl~eIk~ 69 (118)
T d1r8ea1 7 GEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGT---PLEEMKK 69 (118)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTC---CHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHcCCcccccccCCCCcccccHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 4578999999999999999999963 46789999999999999999999988777 5666554
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.60 E-value=3.8e-05 Score=67.93 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC----CCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP----YPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp----~~~~sFDlV~~~~~ 289 (372)
|.+|||||++.|..+..+++. ......++++|+.+.....+....-.+.+..+|..... +....+|+|+.-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 478999999999877655532 12346789999976554333333334566666544332 34557899887543
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++. .....-+ ++..+|+|||++++.+.
T Consensus 161 -H~~-~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 161 -HAN-TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp -CSS-HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred -cch-HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 332 2222223 46789999999999875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.00018 Score=65.26 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=77.6
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCCCeEEEEeeccCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLPAMIGNFISRQL 274 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl~~~~~~~d~~~l 274 (372)
.....+...++ .+|||+.+|.|.=+..+++.... ..|++.|.++.-++..+ ..|+.......+....
T Consensus 93 l~~~~L~~~~g--------~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~ 163 (284)
T d1sqga2 93 GCMTWLAPQNG--------EHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP 163 (284)
T ss_dssp THHHHHCCCTT--------CEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred ccccccCcccc--------ceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence 33445555555 79999999999999999887543 56899999987765444 3477655544332221
Q ss_pred C--CCCCCccEEEec------ccc-------cccccc--------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 275 P--YPSLSFDMVHCA------QCG-------IIWDKK--------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 275 p--~~~~sFDlV~~~------~~~-------~~~~~~--------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+ ...+.||.|++- +.+ ..+.+. ...+|..+.+.|||||+++.++.....
T Consensus 164 ~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 164 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp HHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred chhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 1 245689999972 111 011111 225788899999999999999987655
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.52 E-value=0.0013 Score=57.91 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=86.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCCC-eEEEEeeccCCCC---CCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLP-AMIGNFISRQLPY---PSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl~-~~~~~~d~~~lp~---~~~sFDlV~~~~ 288 (372)
..+++|||+|.|.-|..|+-..+ ...++.+|.+..-+.+.+ +.++. +.+....++.+.. ..++||+|+|-.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 36899999999999988886533 366889999987665533 34765 4444444444332 246899999974
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee----------cceE
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ----------DETF 358 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~----------~~~~ 358 (372)
+ .....++.-..+.+++||.+++.-.. ....+.+..+.....+++++.... ...+
T Consensus 150 v-----a~l~~ll~~~~~~l~~~g~~i~~KG~----------~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv 214 (239)
T d1xdza_ 150 V-----ARLSVLSELCLPLVKKNGLFVALKAA----------SAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIM 214 (239)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEEECC-----------CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEE
T ss_pred h-----hCHHHHHHHHhhhcccCCEEEEECCC----------ChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEE
Confidence 3 45566888899999999999887442 122333444444456666654321 2356
Q ss_pred EEEecCC
Q 017377 359 IWQKTVD 365 (372)
Q Consensus 359 iw~K~~~ 365 (372)
+++|...
T Consensus 215 ~i~K~~~ 221 (239)
T d1xdza_ 215 VIRKIKN 221 (239)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 7777653
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00011 Score=62.35 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=62.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~~ 289 (372)
.+|||+||++|.|+.++.+.......+.++|..+. +.-..+.+...+..... ...+.||+|+|-.+
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 78999999999999999886434456888997652 11112344444432211 24567999999644
Q ss_pred ccccc---ccH-------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWD---KKE-------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~---~~~-------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.-.-. .|. ..++.-+.++|++||.|++-...
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 22111 111 13466678999999999998764
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.43 E-value=0.00027 Score=67.61 Aligned_cols=124 Identities=22% Similarity=0.188 Sum_probs=81.1
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc----CC--------ceeEEEEeeCCHHHH
Q 017377 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL----KL--------MAVCVAVYEATGSQV 254 (372)
Q Consensus 187 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~----~~--------~~~~v~gvD~s~~~v 254 (372)
+.+|.- ....+.|.+.+....+ .+|+|-.||+|.|...+.++ +. ....+.|+|+++.+.
T Consensus 142 G~f~TP-~~Iv~~mv~ll~~~~~--------~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~ 212 (425)
T d2okca1 142 GQYFTP-RPLIQAMVDCINPQMG--------ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV 212 (425)
T ss_dssp GGGCCC-HHHHHHHHHHHCCCTT--------CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH
T ss_pred hhhccc-hhhhHhhheeccCccc--------ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH
Confidence 344432 3456777887765544 78999999999998877653 10 012488999999999
Q ss_pred HHHHHc----CCC---eEEEEeeccCCCCCCCCccEEEecccc--cccc-------------c-cHHHHHHHHHhcccCC
Q 017377 255 QLALER----GLP---AMIGNFISRQLPYPSLSFDMVHCAQCG--IIWD-------------K-KEGIFLIEADRLLKPG 311 (372)
Q Consensus 255 ~~A~~r----gl~---~~~~~~d~~~lp~~~~sFDlV~~~~~~--~~~~-------------~-~~~~~L~el~rvLkPG 311 (372)
..|+.+ +.. ..+...+... ..+...||+|+++--+ ..+. . ....++..+...|+||
T Consensus 213 ~la~~n~~l~g~~~~~~~i~~~d~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 291 (425)
T d2okca1 213 TLASMNLYLHGIGTDRSPIVCEDSLE-KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 291 (425)
T ss_dssp HHHHHHHHHTTCCSSCCSEEECCTTT-SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHhhhhhcCCccccceeecCchhh-hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence 888754 332 1233333322 2356789999998221 1110 1 1224888999999999
Q ss_pred eEEEEEeCC
Q 017377 312 GYFVLTSPE 320 (372)
Q Consensus 312 G~lvis~p~ 320 (372)
|.+++..|.
T Consensus 292 G~~~iI~p~ 300 (425)
T d2okca1 292 GRAAVVLPD 300 (425)
T ss_dssp EEEEEEEEH
T ss_pred CeEEEEech
Confidence 999999884
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.29 E-value=0.00085 Score=59.24 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=67.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH---HHHcCCCe-EEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL---ALERGLPA-MIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~---A~~rgl~~-~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|+|+|||.|.++.+++++. ....+.|+++.-..-+. ....+-+. .+.. ...-.-.+++..|+|+|--+ .+
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~-~~dv~~l~~~~~D~vlcDm~-es- 143 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS-GVDVFFIPPERCDTLLCDIG-ES- 143 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC-SCCTTTSCCCCCSEEEECCC-CC-
T ss_pred CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchh-hhhHHhcCCCcCCEEEeeCC-CC-
Confidence 589999999999999998874 44667777774221000 00001111 1111 01112235788999999743 22
Q ss_pred cccH-------HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHh
Q 017377 294 DKKE-------GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEK 345 (372)
Q Consensus 294 ~~~~-------~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~ 345 (372)
..++ ..+|.-+.+.|+|||.|++-...+.. ....+.++.|...
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~---------~~v~e~le~lq~~ 193 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM---------SSVIEKMEALQRK 193 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS---------HHHHHHHHHHHHH
T ss_pred CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC---------hHHHHHHHHHHHH
Confidence 1111 14666778899999999998775433 2345555555443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00025 Score=63.25 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d 270 (372)
....+.+.+.+....+ ..|||||||+|.+|..|++.+ ..++++|+++.+++..+++.. ++.+...|
T Consensus 7 ~~~~~~Iv~~~~~~~~--------d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D 75 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKG--------QAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFLGPKLTIYQQD 75 (252)
T ss_dssp HHHHHHHHHHHCCCTT--------CCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTTGGGEEEECSC
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhhccchhHHhhh
Confidence 4567788888876655 789999999999999999875 348899999999998887632 35666666
Q ss_pred ccCCCC
Q 017377 271 SRQLPY 276 (372)
Q Consensus 271 ~~~lp~ 276 (372)
...+++
T Consensus 76 ~l~~~~ 81 (252)
T d1qyra_ 76 AMTFNF 81 (252)
T ss_dssp GGGCCH
T ss_pred hhhhcc
Confidence 655543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00052 Score=61.97 Aligned_cols=81 Identities=21% Similarity=0.144 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--C----CCeEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--G----LPAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--g----l~~~~~ 267 (372)
....+.+.+.+....+ .+|||||+|+|.+|..|++.+ ..++++|+++.+++..+++ . ..+.+.
T Consensus 7 ~~i~~kIv~~~~~~~~--------d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i 75 (278)
T d1zq9a1 7 PLIINSIIDKAALRPT--------DVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVL 75 (278)
T ss_dssp HHHHHHHHHHTCCCTT--------CEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred HHHHHHHHHHhCCCCC--------CEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhh
Confidence 3466777777766555 789999999999999999885 3588999999999887765 1 135566
Q ss_pred EeeccCCCCCCCCccEEEec
Q 017377 268 NFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~ 287 (372)
..|....+++ .++.|+++
T Consensus 76 ~~D~l~~~~~--~~~~vV~N 93 (278)
T d1zq9a1 76 VGDVLKTDLP--FFDTCVAN 93 (278)
T ss_dssp ESCTTTSCCC--CCSEEEEE
T ss_pred HHHHhhhhhh--hhhhhhcc
Confidence 6666555544 35678877
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0028 Score=57.38 Aligned_cols=105 Identities=10% Similarity=-0.026 Sum_probs=66.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCC---CCCccEEEec--
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYP---SLSFDMVHCA-- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~---~~sFDlV~~~-- 287 (372)
.+|||+.||.|.-+.++++.-.....++++|+++.-++..+++ |+. +.+...|...++.. .+.||.|++.
T Consensus 96 ~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 96 SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred ceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecCc
Confidence 7899999999998888876522335689999998887665543 665 44555555444322 2579999873
Q ss_pred --c--ccc-----cc--ccc----------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 --Q--CGI-----IW--DKK----------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 --~--~~~-----~~--~~~----------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. ++- .| ... ...+|.... .|+|||+++.++.....
T Consensus 176 CSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~ 231 (293)
T d2b9ea1 176 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ 231 (293)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred ccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence 1 100 01 000 112344444 47999999999886654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00029 Score=69.33 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=77.8
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc----CC-------------ceeEEEEeeC
Q 017377 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL----KL-------------MAVCVAVYEA 249 (372)
Q Consensus 187 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~----~~-------------~~~~v~gvD~ 249 (372)
+.+|.- ...++.|.+.+....+ .+|+|-.||+|.|...+.+. .. ....+.|+|+
T Consensus 144 GqfyTP-~~Iv~~mv~ll~~~~~--------~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~ 214 (524)
T d2ar0a1 144 GQYFTP-RPLIKTIIHLLKPQPR--------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 214 (524)
T ss_dssp -CCCCC-HHHHHHHHHHHCCCTT--------CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEES
T ss_pred chhccc-cchhHhhhhcccCccc--------hhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhcc
Confidence 444432 3456778887766554 68999999999998766542 10 0124789999
Q ss_pred CHHHHHHHHHc----CCCeE------EEEeeccCC-CCCCCCccEEEeccccc-cc-----------ccc-HHHHHHHHH
Q 017377 250 TGSQVQLALER----GLPAM------IGNFISRQL-PYPSLSFDMVHCAQCGI-IW-----------DKK-EGIFLIEAD 305 (372)
Q Consensus 250 s~~~v~~A~~r----gl~~~------~~~~d~~~l-p~~~~sFDlV~~~~~~~-~~-----------~~~-~~~~L~el~ 305 (372)
++.+...|+.+ +.... ....+.... ......||+|+++--+- .+ ..+ .-.++..+.
T Consensus 215 ~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l 294 (524)
T d2ar0a1 215 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHII 294 (524)
T ss_dssp CHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHH
Confidence 99999888754 32211 111111100 12346799999982210 00 011 224788999
Q ss_pred hcccCCeEEEEEeCC
Q 017377 306 RLLKPGGYFVLTSPE 320 (372)
Q Consensus 306 rvLkPGG~lvis~p~ 320 (372)
+.|+|||++.+..|.
T Consensus 295 ~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 295 ETLHPGGRAAVVVPD 309 (524)
T ss_dssp HHEEEEEEEEEEEEH
T ss_pred HhccccCcEEEEEeh
Confidence 999999999999884
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.65 E-value=0.0054 Score=50.22 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=66.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---------CCCCCccEEEec
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---------~~~~sFDlV~~~ 287 (372)
.+||=+||| .|.++..+++.. ...++++|.++.-++.|++.+....+..-...... ...+.+|+|+-.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~ 105 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 105 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence 789999998 577777777662 24688999999999999998877654321111100 113468988754
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
-. . ...+....++|+|||.+++......
T Consensus 106 ~g------~-~~~~~~a~~~~~~~G~iv~~G~~~~ 133 (170)
T d1e3ja2 106 SG------N-EKCITIGINITRTGGTLMLVGMGSQ 133 (170)
T ss_dssp SC------C-HHHHHHHHHHSCTTCEEEECSCCSS
T ss_pred CC------C-hHHHHHHHHHHhcCCceEEEecCCC
Confidence 21 1 1367888899999999999876543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.48 E-value=0.003 Score=59.19 Aligned_cols=97 Identities=19% Similarity=0.089 Sum_probs=66.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe----------------EEEEeeccCCC-C
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA----------------MIGNFISRQLP-Y 276 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~----------------~~~~~d~~~lp-~ 276 (372)
.+|||..||+|..+...+.... ...|+..|+|+..++.++++ ++.. .....|+..+. -
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 7899999999999996655422 34688999999999988865 3321 11222221111 1
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..+.||+|..-- +. .+..+|....+.++.||.+.++...
T Consensus 126 ~~~~fDvIDiDP----fG-s~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 126 RHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp STTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCcCCcccCCC----CC-CcHHHHHHHHHHhccCCEEEEEecC
Confidence 245699998752 22 2234899999999999999998653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0017 Score=53.52 Aligned_cols=97 Identities=20% Similarity=0.166 Sum_probs=64.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||-+|+| .|.++..+++. ....++++|.++..++.|++.|.+..+...+... ..-..+.||.|+..-...+- .
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~-~ 105 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD-I 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT-C
T ss_pred CEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc-c
Confidence 789999998 67788777765 2346778999999999999999775443211111 00124579988764221111 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+....++|+|||.+++.....
T Consensus 106 ----~~~~~~~~l~~~G~iv~~G~~~ 127 (168)
T d1piwa2 106 ----DFNIMPKAMKVGGRIVSISIPE 127 (168)
T ss_dssp ----CTTTGGGGEEEEEEEEECCCCC
T ss_pred ----hHHHHHHHhhccceEEEecccc
Confidence 2445788999999999876433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.011 Score=48.92 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=63.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC--------C-CCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL--------P-YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l--------p-~~~~sFDlV~~~ 287 (372)
.+||=+|+|. |.++..+++... ...|+++|.++..++.|++.|....+... .... . .....+|+|+-.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-~~~~~~~~~~i~~~~~~~g~Dvvid~ 107 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGADLTLNRR-ETSVEERRKAIMDITHGRGADFILEA 107 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTCSEEEETT-TSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECCCccchhheecccccc-cccccccccccccccccccccceEEEecc-ccchHHHHHHHHHhhCCCCceEEeec
Confidence 7899999984 777778777621 13688899999999999998875543211 1110 0 123469998854
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-. . + ..+....+.|+|||.+++...
T Consensus 108 vG--~--~---~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 108 TG--D--S---RALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp SS--C--T---THHHHHHHHEEEEEEEEECCC
T ss_pred CC--c--h---hHHHHHHHHhcCCCEEEEEee
Confidence 22 1 1 257788899999999988764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.015 Score=47.73 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=63.5
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||=+|+ |.|..+..+++. ....+++++.+++..+.+++.|....+ +..+.. ...+.||+|+..
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CEEEEEeccccccccccccccc--cCcccccccccccccccccccCccccc---ccccccHHHHhhhhhccCCceEEeec
Confidence 78999996 467778777776 234577778889889999998876543 222222 235679999975
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
-+ ...+.+..++|+|||.++....
T Consensus 105 ~g--------~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 105 LA--------NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp CH--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred cc--------HHHHHHHHhccCCCCEEEEEec
Confidence 22 1367788899999999998643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.02 E-value=0.028 Score=46.32 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=63.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~~ 290 (372)
.+||=+|||. |.++..+++.. -...|+++|.++.-++.|++.|....+. ....... .....||+|+-.-.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~-~~~~~~~~~v~~~t~g~G~D~vid~~g- 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIEDQVMKLTNGKGVDRVIMAGG- 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHHHTCSEEEC-GGGSCHHHHHHHHTTTSCEEEEEECSS-
T ss_pred CEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHhhCcccccc-ccchhHHHHHHHHhhccCcceEEEccC-
Confidence 6788899996 88888888762 1134788999999999999988654432 1111110 12345999886522
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. ..+.+..+.++|||.+++...
T Consensus 106 ~~------~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 106 GS------ETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp CT------THHHHHHHHEEEEEEEEECCC
T ss_pred CH------HHHHHHHHHHhcCCEEEEEee
Confidence 11 256778899999999998764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.77 E-value=0.062 Score=45.02 Aligned_cols=107 Identities=18% Similarity=0.067 Sum_probs=71.0
Q ss_pred HHHccCCCchhhhcCCCeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC----
Q 017377 202 EMIGLGTDSEFLQAGVQSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY---- 276 (372)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~---- 276 (372)
+.....++ .+||-+|||. |..+..+++.. -...|+.+|.++.-++.|++.|....+. ....++
T Consensus 19 ~~a~v~~G--------~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~---~~~~~~~~~i 86 (195)
T d1kola2 19 VTAGVGPG--------STVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIADL---SLDTPLHEQI 86 (195)
T ss_dssp HHTTCCTT--------CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEET---TSSSCHHHHH
T ss_pred HHhCCCCC--------CEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhccccEEEe---CCCcCHHHHH
Confidence 34455565 7999999998 66777777652 2246888999999999999998654321 111111
Q ss_pred ----CCCCccEEEeccccc-----cc---cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 ----PSLSFDMVHCAQCGI-----IW---DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ----~~~sFDlV~~~~~~~-----~~---~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
....+|+++-.-... +. .......+..+.++++|||.+++....
T Consensus 87 ~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 87 AALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp HHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred HHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 234689988542211 00 112235899999999999999998643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.062 Score=43.60 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=64.8
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~ 288 (372)
.+||=+|||. |.++..+++... ...|+++|.++.-++.|++.|.+.....- ..... .....+|+|+-.-
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~-~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGADLVLQIS-KESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCSEEEECS-SCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhCCccccccc-ccccccccccccccCCCCceEEEecc
Confidence 7899999986 455566665521 23688899999999999998876554321 11100 0124689988652
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
. . ...+....+.+++||.+++......
T Consensus 106 G------~-~~~~~~a~~~~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 106 G------A-EASIQAGIYATRSGGTLVLVGLGSE 132 (171)
T ss_dssp C------C-HHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred C------C-chhHHHHHHHhcCCCEEEEEecCCC
Confidence 2 1 2368888999999999999876443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.31 E-value=0.045 Score=44.15 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=60.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|. |.++..+++.. ...++++|.++.-++.+++.|....+. ...-. ...+.+|.|.+...
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~---~~~~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVN---ARQEDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEE---TTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred CEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCcccccc---ccchhHHHHHHHhhcCCccccccccc
Confidence 6788899984 66667777663 256888999999999999988764432 11111 11233455554422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...+....+.|+|||.+++....
T Consensus 104 --------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 104 --------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp --------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred --------chHHHHHHHHhcCCcEEEEEEec
Confidence 13677888999999999987643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.047 Score=44.27 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=62.2
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=+|||. |.++..+++.. ...++.+|.++.-.+.+++.|....+..-+........+.+|.|+-.-...
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~----- 104 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP----- 104 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC-----
T ss_pred CEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc-----
Confidence 7888899874 77777777752 244567888888889999988775543111111112335799888642211
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..+....++|+|||.+++....
T Consensus 105 --~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1uufa2 105 --HNLDDFTTLLKRDGTMTLVGAP 126 (168)
T ss_dssp --CCHHHHHTTEEEEEEEEECCCC
T ss_pred --hhHHHHHHHHhcCCEEEEeccC
Confidence 1356778899999999997653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.062 Score=48.76 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CCCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl~~~~~~~d~ 271 (372)
....+.+.+.+..... .......+|||||.|.|.+|..|++.+ ....++++|+++..++..+++ +-+..+...|.
T Consensus 23 ~~i~~~Iv~~~~l~~~--~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKT--YKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGT--CCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHHhcCCcc--ccccCCCeEEEECCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 4567777777764321 011123689999999999999999863 124688999999999887765 22344544443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.73 E-value=0.077 Score=43.54 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=66.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~~ 289 (372)
.+||=+|||. |.++..+++... ...|+..|.++.-.+.|++.|....+..- ..+.. ...+.+|+|+-.-.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~-~~~~~~~~~~~~~~~~G~d~vie~~G 107 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATDCLNPR-ELDKPVQDVITELTAGGVDYSLDCAG 107 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEEECGG-GCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCcccCCc-cchhhhhhhHhhhhcCCCcEEEEecc
Confidence 7899999997 888888887622 23577889999999999999876554311 11111 12356899875421
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeCCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p~~ 321 (372)
. ...+.+..+.++|| |.+++.....
T Consensus 108 ------~-~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 108 ------T-AQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp ------C-HHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred ------c-chHHHHHHHHhhcCCeEEEecCCCC
Confidence 1 23788899999996 9999987543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.67 E-value=0.064 Score=45.93 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=43.1
Q ss_pred CCCCCccEEEecccc----ccc---------cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHH
Q 017377 276 YPSLSFDMVHCAQCG----IIW---------DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEF 342 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~----~~~---------~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l 342 (372)
+|++++|+|++.--. ..+ .+.....+.++.|+|+|||.+++.... .....+...
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~-------------~~~~~~~~~ 85 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP-------------FNCAFICQY 85 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH-------------HHHHHHHHH
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc-------------hhhhhhhhh
Confidence 457788888875110 011 111235788999999999998866431 112223333
Q ss_pred HHhcCeeEEeeecceEEEEecCC
Q 017377 343 TEKICWSLIAQQDETFIWQKTVD 365 (372)
Q Consensus 343 ~~~lcw~~~~~~~~~~iw~K~~~ 365 (372)
....+|... +.++|.|+..
T Consensus 86 ~~~~g~~~~----~~iiW~k~~~ 104 (256)
T d1g60a_ 86 LVSKGMIFQ----NWITWDKRDG 104 (256)
T ss_dssp HHHTTCEEE----EEEEECCCCS
T ss_pred hhcccceee----eeeEeeeccc
Confidence 455677654 4568988753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.56 E-value=0.11 Score=45.07 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=47.2
Q ss_pred CCCCCccEEEeccc----cccc------cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHh
Q 017377 276 YPSLSFDMVHCAQC----GIIW------DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEK 345 (372)
Q Consensus 276 ~~~~sFDlV~~~~~----~~~~------~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~ 345 (372)
+|++|+|+|+..-- .-.| .+.....+.++.|+|+|||.+++.......... ........+....+.
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 94 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA----GSGDLISIISHMRQN 94 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT----TBCCHHHHHHHHHHH
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc----cccchhhHHHHHHhc
Confidence 56899999998621 1111 122345789999999999999987654322111 111122333444455
Q ss_pred cCeeEEeeecceEEEEecCC
Q 017377 346 ICWSLIAQQDETFIWQKTVD 365 (372)
Q Consensus 346 lcw~~~~~~~~~~iw~K~~~ 365 (372)
.+|.+. +..+|.|+..
T Consensus 95 ~~~~~~----~~i~~~k~~~ 110 (279)
T d1eg2a_ 95 SKMLLA----NLIIWNYPNG 110 (279)
T ss_dssp CCCEEE----EEEEEECSCC
T ss_pred cCceee----eeeeeccccc
Confidence 566554 4457777653
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.50 E-value=0.14 Score=46.98 Aligned_cols=105 Identities=16% Similarity=0.257 Sum_probs=60.2
Q ss_pred CeEEEeCCCCcHHHHHHHhc---------------CCceeEEEEeeCCHHHHHHHHHc-----C-CCeEEE---EeeccC
Q 017377 218 QSVLDVGCGFGSFGAHLVSL---------------KLMAVCVAVYEATGSQVQLALER-----G-LPAMIG---NFISRQ 273 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~---------------~~~~~~v~gvD~s~~~v~~A~~r-----g-l~~~~~---~~d~~~ 273 (372)
-+|.|+||.+|..+..+.+. ......+.--|.-.+-....-.. . .+..+. ..+...
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 57999999999877433321 12345555555543322211111 0 111222 123333
Q ss_pred CCCCCCCccEEEeccccccccc---------------------------------cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 274 LPYPSLSFDMVHCAQCGIIWDK---------------------------------KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 274 lp~~~~sFDlV~~~~~~~~~~~---------------------------------~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
--||++|.|++||+.+ .||-. |...+|+-=.+-|+|||.++++...
T Consensus 133 rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 3489999999999976 66721 1113555556678999999998765
Q ss_pred CCC
Q 017377 321 SKP 323 (372)
Q Consensus 321 ~~~ 323 (372)
...
T Consensus 212 r~~ 214 (359)
T d1m6ex_ 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.46 E-value=0.071 Score=42.78 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=60.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-----CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-----YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-----~~~~sFDlV~~~~~~~ 291 (372)
.+||=+|+|. |..+..+++.. ...++++|.++.-++++++.|....+...+ .+.. ...+.+|.|.+...
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~-- 103 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVVTAVS-- 103 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEESSCC--
T ss_pred CEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceeccccc-chhhhhcccccCCCceEEeecCC--
Confidence 6788889886 55566666652 245788999999999999988765443111 1100 12334555544311
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...+....+.|+|||.+++.....
T Consensus 104 ------~~~~~~a~~~l~~~G~i~~~g~~~ 127 (168)
T d1rjwa2 104 ------KPAFQSAYNSIRRGGACVLVGLPP 127 (168)
T ss_dssp ------HHHHHHHHHHEEEEEEEEECCCCS
T ss_pred ------HHHHHHHHHHhccCCceEeccccc
Confidence 236788999999999999976543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.21 E-value=0.064 Score=43.79 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=61.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=+|||. |.++..+++. +. ..++..|.++.-++.+++.|....+. .+..+. .+.++.||+|+-.-.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~vid~~G- 105 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFALESTG- 105 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEEEECSC-
T ss_pred CEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEEEEcCC-
Confidence 7888899985 4455555554 43 34677899999999999988754432 111111 123457999885421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..++++|+|.+++...
T Consensus 106 -----~-~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 106 -----S-PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp -----C-HHHHHHHHHTEEEEEEEEECCC
T ss_pred -----c-HHHHHHHHhcccCceEEEEEee
Confidence 1 1367888999999999998764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.89 E-value=0.083 Score=42.68 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=62.9
Q ss_pred CeEEEeCC-C-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecc
Q 017377 218 QSVLDVGC-G-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGC-G-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~ 288 (372)
.+||=+|| | .|..+..+++. +. ..++.+|.++.-++.+++.|....+. .+..+.. ...+.||+|+...
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d~vid~~ 105 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVDAVIDLN 105 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CEEEEEeccccceeeeeeccccccc--ccccccccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccchhhhccc
Confidence 78999997 3 56666666654 32 45888999999999999988764432 2111110 1245699998652
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ....+....+.++|||.+++....
T Consensus 106 g-------~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 106 N-------SEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp C-------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred c-------cchHHHhhhhhcccCCEEEEeccc
Confidence 2 112667788999999999988654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.53 E-value=0.29 Score=39.13 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=57.8
Q ss_pred eEEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 219 SVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 219 ~VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
+|+=||||. |+++..|.+.+. ...|+++|.++..++.|++.+........ . ....+...|+|+..- .. ..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~dlIila~---p~-~~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTTS-I--AKVEDFSPDFVMLSS---PV-RT 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEESC-G--GGGGGTCCSEEEECS---CH-HH
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhhh-h--hhhhccccccccccC---Cc-hh
Confidence 477799985 345666666664 35699999999999999998764333211 1 112234679988652 11 23
Q ss_pred HHHHHHHHHhcccCCeEEE
Q 017377 297 EGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lv 315 (372)
...++.++...++++-.+.
T Consensus 75 ~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhhhcccccccccc
Confidence 3457888888888876554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.82 Score=40.25 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=72.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEeccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~~~~~~~ 293 (372)
+.+|+|+-||.|.+...|...|+..-.+.++|+++.+++..+.+.....+...|..++. ++...+|+++...--..+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 36799999999999888877776544577899999999887776544444444555443 222368999875211111
Q ss_pred ---------cccHHHHHHHHHhcc-----cCCeEEEEE-eCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 294 ---------DKKEGIFLIEADRLL-----KPGGYFVLT-SPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 294 ---------~~~~~~~L~el~rvL-----kPGG~lvis-~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
.++...++.++.+++ ||-- +++. ++.. .....++.+....+++++.+..
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~-~i~ENV~~l---------~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKY-ILLENVKGF---------EVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCSE-EEEEEETTG---------GGSHHHHHHHHHHHHTTEEEEE
T ss_pred cccccccccccccccccchhhhhHhhhcCCCce-eeeeccCCc---------ccchhhHHHHhhhhccccccce
Confidence 112223445555544 4753 3332 2221 1123456666666788876654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.25 E-value=0.23 Score=43.48 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=43.6
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG 261 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg 261 (372)
.+.+.+.+.... ++ ..|||.=||+|+.+.+..+.| ...+|+|+++..++.|++|-
T Consensus 238 ~L~~rlI~~~s~-~g--------diVlDpF~GSGTT~~AA~~lg---R~~Ig~El~~~y~~~a~~Rl 292 (320)
T d1booa_ 238 KLPEFFIRMLTE-PD--------DLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRF 292 (320)
T ss_dssp HHHHHHHHHHCC-TT--------CEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGG
T ss_pred HHHHHhhhhccc-CC--------CEEEecCCCCcHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHH
Confidence 455566665543 33 689999999999998888776 45889999999999999884
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.57 E-value=0.21 Score=40.52 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=60.2
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEec
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~ 287 (372)
.+||=.| .|.|.++..+++. ....+.+++-+++..+.+++.|....+. ..... .....||+|+..
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~~~Ga~~vi~---~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSRLGVEYVGD---SRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHTTCCSEEEE---TTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CEEEEECCCCCcccccchhhcc--ccccceeeeccccccccccccccccccc---CCccCHHHHHHHHhCCCCEEEEEec
Confidence 6888876 3467778888766 2244566677888889999888765432 22211 234679999976
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
-. . ..+.++.++|+|+|.++...
T Consensus 102 ~g------~--~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 102 LA------G--EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CC------T--HHHHHHHHTEEEEEEEEECS
T ss_pred cc------c--hHHHHHHHHhcCCCEEEEEc
Confidence 32 1 25677889999999999864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.45 E-value=0.41 Score=38.81 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=63.3
Q ss_pred CeEEEeCCC--CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG--~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|++ .|..+..+++.. ...+++++.+++..+.+++.|....+..-+.... ....+.+|+|+-.-.
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 788877774 567778888762 3568888899999999999987765432211000 013456999886421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
...+.+..+.|+|||.+++..
T Consensus 108 -------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 108 -------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp -------HHHHHHHGGGEEEEEEEEECC
T ss_pred -------chhhhhhhhhccCCCeEEeec
Confidence 236788999999999999865
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.14 E-value=0.32 Score=39.80 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=63.3
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEe---eccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF---ISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~---d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+||=.| .|.|+++..|++. ....+++..-++.-.+.+++.|....+-.- .........+.||+|+-+-.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~--~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg--- 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG--- 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST---
T ss_pred CEEEEEeccchHHHHHHHHHHH--cCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC---
Confidence 6788877 4678889998876 224466677777888889888877543210 01111234568998886522
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...+.+..++|+|||.++........
T Consensus 108 -----g~~~~~~l~~l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 108 -----GRTLATVLSRMRYGGAVAVSGLTGGA 133 (176)
T ss_dssp -----TTTHHHHHHTEEEEEEEEECSCCSSS
T ss_pred -----chhHHHHHHHhCCCceEEEeecccCc
Confidence 11467889999999999988765444
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.61 E-value=0.55 Score=37.65 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=63.7
Q ss_pred CeEEEeCCC--CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC--------CCCCccEEEec
Q 017377 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY--------PSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG--~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~--------~~~sFDlV~~~ 287 (372)
.+||=.|+| .|.++..+++. ....+++++.++.-.+.+++.|.+..+. ..+-.+ ..+.+|+|+..
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~---~~~~d~~~~v~~~t~g~g~d~v~d~ 104 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVIN---YREEDLVERLKEITGGKKVRVVYDS 104 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEE---TTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEE---CCCCCHHHHHHHHhCCCCeEEEEeC
Confidence 688888655 67788888876 3356889999999999999998765432 222221 34679998875
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.- ..+......++|+|.+++....
T Consensus 105 ~g~--------~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 105 VGR--------DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp SCG--------GGHHHHHHTEEEEEEEEECCCT
T ss_pred ccH--------HHHHHHHHHHhcCCeeeecccc
Confidence 321 1456788999999998876543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.39 E-value=0.77 Score=36.70 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=61.9
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~ 288 (372)
.+||=+|+|. |.++..+++. +. ..++++|.++.-++.+++.+....+. ....+ ...+.+|+|+-.-
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~~~ga~~~i~---~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLGADHVVD---ARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTTCSEEEE---TTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CEEEEeCCChHHHHHHHHHHhhcC--cccccccchhHHHHHHhhcccceeec---CcccHHHHHHHhhCCCCceEEEEec
Confidence 7899999985 4455566554 43 35778899999999999888654332 11111 1234589888652
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. . ...+....+.|++||.+++....
T Consensus 109 g------~-~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 109 G------S-QATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp C------C-HHHHHHGGGGEEEEEEEEECCCS
T ss_pred C------c-chHHHHHHHHHhCCCEEEEEeCc
Confidence 2 1 12678889999999999998753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.80 E-value=0.54 Score=39.67 Aligned_cols=54 Identities=19% Similarity=0.046 Sum_probs=42.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+.+.+.+.... ++ ..|||.=||+|+.+.+..+.+ ...+|+|+++..++.|++|
T Consensus 200 ~L~~~lI~~~s~-~g--------d~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 200 DLIERIIRASSN-PN--------DLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp HHHHHHHHHHCC-TT--------CEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHhCC-CC--------CEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence 445566665542 33 689999999999998877765 4588999999999999876
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.56 E-value=0.36 Score=39.24 Aligned_cols=97 Identities=10% Similarity=-0.071 Sum_probs=60.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~~ 290 (372)
.+||=+|||. |.++..+++.. -...|+++|.++.-++.|++.|....+..-+..... ...+.+|.|+-.-.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g- 108 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG- 108 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC-
T ss_pred CEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC-
Confidence 7899999985 44555555542 225688999999999999999987655322111100 12356888775422
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
....+...+..+++++|.+++.....
T Consensus 109 -----~~~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 109 -----HLETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp -----CHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred -----chHHHHHHHHHhhcCCeEEEEEEccc
Confidence 12223333455556769999876443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.06 E-value=0.14 Score=41.65 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=58.7
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=.|. |.|.++..+++.. ...+++++.++...+.+++.|.+..+...+....--..+.+|+|+-... +
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G-----~ 101 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG-----K 101 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC-----T
T ss_pred CEEEEEeccccchhhhhhhhccc--ccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc-----h
Confidence 78888884 3467777788762 2457788888888999999887654421111000012356999885311 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEe
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.+.+..+.|+|||.++...
T Consensus 102 ----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 102 ----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp ----THHHHHTTEEEEEEEEEC-
T ss_pred ----hHHHHHHHHhcCCcEEEEe
Confidence 3466788999999999764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.63 E-value=0.59 Score=37.75 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=58.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~ 288 (372)
.+||=+|||. |.++..+++. +. ..|+++|.++.-++.|++.|....+..- ..+.. ...+.+|.|+-.-
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~--~~Vi~~d~~~~kl~~a~~lGa~~~i~~~-~~d~~~~~~~~~~~~~G~d~vid~~ 105 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKAIELGATECLNPK-DYDKPIYEVICEKTNGGVDYAVECA 105 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHTTCSEEECGG-GCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCchhHHHHHHHHHcCC--ceeeccCChHHHHHHHHHcCCcEEEcCC-CchhHHHHHHHHhcCCCCcEEEEcC
Confidence 7899999985 4455555554 33 4588899999999999999877654211 11111 1234688887542
Q ss_pred ccccccccHHHHHHHHHhcc-cCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLL-KPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvL-kPGG~lvis~p~ 320 (372)
. .. ..+.+....+ +++|.+++....
T Consensus 106 g------~~-~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 106 G------RI-ETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp C------CH-HHHHHHHHTBCTTTCEEEECCCC
T ss_pred C------Cc-hHHHHHHHHHHHhcCceEEEEEe
Confidence 2 11 2455555555 556998887643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.54 E-value=1.8 Score=33.97 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=55.7
Q ss_pred eEEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 219 SVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 219 ~VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
+|.=||+|. +.++..|.+.+. .|+++|.+++.++.+++.+.-..... +.+. -...|+|+.+ ... ..
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~DiIila---vp~-~~ 69 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQSTCEKAVERQLVDEAGQ-DLSL----LQTAKIIFLC---TPI-QL 69 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTSCSEEES-CGGG----GTTCSEEEEC---SCH-HH
T ss_pred EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHhhccceeee-eccc----cccccccccc---CcH-hh
Confidence 455678873 345666766664 58889999999999998875332221 1111 2457988864 122 33
Q ss_pred HHHHHHHHHhcccCCeEEEE
Q 017377 297 EGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvi 316 (372)
...++.++...|+++-.++-
T Consensus 70 ~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEEE
T ss_pred hhhhhhhhhhhcccccceee
Confidence 44688899888888876653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=87.46 E-value=0.095 Score=42.96 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=61.6
Q ss_pred CCCeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 216 GVQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 216 ~~~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+.+|+=||+|+- ..++..+.. ....++.+|.+++.++....... .......+...+.-.-...|+|+.. ++..-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~a-alipG 107 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGA-VLVPG 107 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEEC-CCCTT
T ss_pred CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEe-eecCC
Confidence 3579999999974 455555554 33668889999999887665422 2333322222221112458999987 33433
Q ss_pred cccHHHHHHHHHhcccCCeEEE
Q 017377 294 DKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lv 315 (372)
...|..+-+++.+.+|||..++
T Consensus 108 ~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 108 RRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp SSCCCCBCHHHHTTSCTTCEEE
T ss_pred cccCeeecHHHHhhcCCCcEEE
Confidence 3444446678999999998765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.06 E-value=1.1 Score=35.88 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=59.2
Q ss_pred CeEEEeCCCCcH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~~ 290 (372)
.+||=+|+|.+. ++..++... ....|+++|.++.-.+.+++.|....+...+..+.- ...+.+|+|+-....
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~ 108 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGR 108 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCc
Confidence 789999997443 444444442 235688899999999999999877554322221110 233578998865331
Q ss_pred ccccccHHHHHHHHHhcccCC-eEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPG-GYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPG-G~lvis~p~ 320 (372)
. ..+......+++| |.+++....
T Consensus 109 ~-------~~~~~a~~~~~~~~g~~~~~~~~ 132 (176)
T d2jhfa2 109 L-------DTMVTALSCCQEAYGVSVIVGVP 132 (176)
T ss_dssp H-------HHHHHHHHHBCTTTCEEEECSCC
T ss_pred h-------hHHHHHHHHHhcCCcceEEecCC
Confidence 1 2556667778776 566655443
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| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=85.50 E-value=1 Score=38.91 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=54.2
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHH---HHHHc---CC--------C
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ---LALER---GL--------P 263 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~---~A~~r---gl--------~ 263 (372)
+.+.+.+....+ ...+|||.=||.|.-+..++..|. .|+++|-++.... .+.++ .. .
T Consensus 76 ~~l~kA~gl~~~------~~~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~r 146 (250)
T d2oyra1 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146 (250)
T ss_dssp SHHHHHTTCBTT------BCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred hHHHHHhcCCCC------CCCEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhh
Confidence 356666665444 335899999999999999998874 4889999986543 22222 11 2
Q ss_pred eEEEEeeccC-CCCCCCCccEEEeccc
Q 017377 264 AMIGNFISRQ-LPYPSLSFDMVHCAQC 289 (372)
Q Consensus 264 ~~~~~~d~~~-lp~~~~sFDlV~~~~~ 289 (372)
..+.+.|+.+ +.-...+||+|..--.
T Consensus 147 i~li~~Ds~~~L~~~~~~~DvIYlDPM 173 (250)
T d2oyra1 147 LQLIHASSLTALTDITPRPQVVYLDPM 173 (250)
T ss_dssp EEEEESCHHHHSTTCSSCCSEEEECCC
T ss_pred heeecCcHHHHHhccCCCCCEEEECCC
Confidence 3455555433 3333567999998644
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=84.98 E-value=0.83 Score=41.51 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred CeEEEeCCCCcHHHHHHHhc------CCceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL------KLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~------~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+|+|+|+|+|.++.-++.. ......+..+|.|+.+.+..+++
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~ 129 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL 129 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHH
Confidence 57999999999998776553 11346688899999987766654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.43 E-value=0.9 Score=38.70 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=42.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+.+.+.+.... ++ ..|||-=||+|+.+.+..+.+ ...+|+|+++..++.|++|
T Consensus 195 ~L~~~~I~~~s~-~g--------diVLDpF~GSGTT~~Aa~~lg---R~~ig~El~~~y~~~a~~R 248 (279)
T d1eg2a_ 195 AVIERLVRALSH-PG--------STVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQ 248 (279)
T ss_dssp HHHHHHHHHHSC-TT--------CEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHH
T ss_pred hHHHHHHHhhcC-CC--------CEEEecCCCCcHHHHHHHHhC---CeEEEEeCCHHHHHHHHHH
Confidence 455566665542 33 689999999999988877765 4588999999999999877
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| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.72 E-value=1.4 Score=34.90 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=57.2
Q ss_pred CeEEEeCCCCcHH-HHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSF-GAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~-~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|.+.. +..++.. .....|+++|.++.-++.|++.|....+-.- ..... ...+.+|+|+-.-.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~-~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~-~~~~~~~~~~~~~~~~G~d~vid~~G 107 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHS-AGAKRIIAVDLNPDKFEKAKVFGATDFVNPN-DHSEPISQVLSKMTNGGVDFSLECVG 107 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCCEEECGG-GCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CEEEEEecCCccchHHHHHHH-HhhchheeecchHHHHHHHHHcCCcEEEcCC-CcchhHHHHHHhhccCCcceeeeecC
Confidence 7899999998554 3334433 2335688899999999999999876544211 11111 12346888876522
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeCCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p~~ 321 (372)
. ...+......+++| |.+++.....
T Consensus 108 ------~-~~~~~~a~~~~~~g~~~~~~~g~~~ 133 (175)
T d1cdoa2 108 ------N-VGVMRNALESCLKGWGVSVLVGWTD 133 (175)
T ss_dssp ------C-HHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred ------C-HHHHHHHHHHhhCCCcceeEEEecC
Confidence 1 12556666766665 5555554433
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| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=82.58 E-value=1.1 Score=36.06 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=63.7
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee---ccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d---~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+||=-| .|.|.++..|++. ....++++.-+++-.+.+++.|.+..+..-+ ........+.+|+|+-.-.
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~--~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg--- 99 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNK--RGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG--- 99 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHH--HTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC---
T ss_pred CEEEEeCCcchHHHHHHHHHHH--cCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc---
Confidence 4577655 4578888888887 2345777788888888898888876543111 1112234567998875421
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
...+.+..+.|+|||.++.......
T Consensus 100 -----g~~~~~~~~~l~~~G~iv~~G~~~g 124 (167)
T d1tt7a2 100 -----GKQLASLLSKIQYGGSVAVSGLTGG 124 (167)
T ss_dssp -----THHHHHHHTTEEEEEEEEECCCSSC
T ss_pred -----HHHHHHHHHHhccCceEEEeeccCC
Confidence 1367889999999999998765443
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| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.84 E-value=1.8 Score=34.26 Aligned_cols=93 Identities=11% Similarity=-0.086 Sum_probs=60.1
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||=+||| .|.++..+++. +. ..|+++|.++.-.+.+++.|....+...+..+. ....+.+|+|+-.-.
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~--~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G 107 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGA--SRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 107 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEecchhHHHHHHHHHHHHhc--CceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence 788888887 34455555554 32 457788999999999999887765432111110 012356899986522
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.....++++||.+++...
T Consensus 108 ------~-~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 108 ------N-VKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp ------C-HHHHHHHHHTBCTTTCEEEECS
T ss_pred ------C-HHHHHHHHHhhcCCceeEEEEe
Confidence 1 1367888999999988776543
|