Citrus Sinensis ID: 017382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccEEEEEcccEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHcccEEcccccccHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccEEEEEcccccccccHHHHcHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHcccccccccccccEEEcccHHHHHHHHcHHcccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccEEEEEcccEEcHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEcccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHccccEEEEEccccHHcHHHHHcccccccccccccccccEEEEEEcccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHccHHHHHHHHHHcccEEEcccHHHHHHHHHccccccccHHHccHHHccccEEEEEccccccHHHHHHHHHHcccEEEccccccccEEEEEcccccccccccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
MEVFKAAYKkgsmardsvairadqksysydqLASSALRISSLLcsndlkttsektknensavlaggcgarigivakpsFEFVAGVLGTWFSGciavplalsypesellhvmhdsdismvLSTEDYREVLQNVasksgakfslippvpnvssettvfdqsqaekmdgqrgedpalivytsgttgkpkgvvhTHKSIDAQVQMLTEAWeytsadqflhclplhhvHGLFNAllaplyagatvefmpkfsvRGIWQRWResypvngnrageaitaftgvPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMcgssalplpvmqqWETItghrllerygmTEFVMAISNplrgarkagtvgnplpgvQVSMILLL
Flexible Loop (DISEMBL)
MEVFKAAykkgsmardsvairadqksysYDQLASSALRISSLLCSNDLKttsektknensavlAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVasksgakfslippvpnvssETTVFDQSqaekmdgqrgedPALIVYTsgttgkpkgvvHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGArkagtvgnplpgvqvsmilll
Low Complexity Region (SEG)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQlassalrissllcsNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQaasasaaKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL
Disordered region (IsUnstruct)
************************************LRISSLLC****************AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV*****************************************LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGN*LPGVQV******
Disordered Region (DISOPRED)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT************QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL
Disordered Region (DISEMBL)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ**********GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL
Disordered Region (DISPRO)
*EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q8H151	544	Malonate--CoA ligase OS=A	yes	no	0.981	0.670	0.706	1e-153
Q4G176	576	Acyl-CoA synthetase famil	yes	no	0.879	0.567	0.388	5e-63
Q58DN7	586	Acyl-CoA synthetase famil	yes	no	0.879	0.558	0.372	5e-61
Q6GLK6	578	Acyl-CoA synthetase famil	N/A	no	0.784	0.505	0.402	9e-61
Q3URE1	583	Acyl-CoA synthetase famil	yes	no	0.779	0.497	0.405	7e-60
P94547	560	Long-chain-fatty-acid--Co	yes	no	0.844	0.560	0.258	5e-22
O07610	513	Long-chain-fatty-acid--Co	no	no	0.854	0.619	0.245	7e-22
B5XUP2	719	Bifunctional protein aas	yes	no	0.473	0.244	0.327	9e-21
B5BFH6	719	Bifunctional protein aas	yes	no	0.473	0.244	0.327	6e-20
Q5PEN7	719	Bifunctional protein aas	yes	no	0.473	0.244	0.327	6e-20

>sp|Q8H151|AAE13_ARATH Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1

 Score =  540 bits (1391), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/371 (70%), Positives = 304/371 (81%), Gaps = 6/371 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query: 358 GNPLPGVQVSM 368
           G PLPGV+  +
Sbjct: 358 GKPLPGVEAKI 368

Malonate--CoA ligase that catalyzes the formation of malonyl-CoA directly from malonate and CoA. May be required for the detoxification of malonate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 3

>sp|Q4G176|ACSF3_HUMAN Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=3

 Score =  241 bits (616), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 203/363 (55%), Gaps = 36/363 (9%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA-----R 70
           D +A+      ++Y +L S +LR+S  +C                  L G  G      R
Sbjct: 55  DRIALVDQHGRHTYRELYSRSLRLSQEICR-----------------LCGCVGGDLREER 97

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
           +  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L 
Sbjct: 98  VSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLS 157

Query: 131 NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
            V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+ 
Sbjct: 158 PVVRKLGV--PLLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVLS 214

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL+ GAT   MP+FS + 
Sbjct: 215 THQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ 274

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL 307
           +W+++  S           I  F  VPT+YT+L++ Y+   T+  A     A   +++RL
Sbjct: 275 VWEKFLSS-------ETPRINVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIRL 327

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQV 366
           M+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+S PL  A R  G+VG PLPGVQV
Sbjct: 328 MVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQV 387

Query: 367 SMI 369
            ++
Sbjct: 388 RIV 390

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q58DN7|ACSF3_BOVIN Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1

 Score =  235 bits (599), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 35/362 (9%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+      ++Y  L   +LR+S  +C   L+  ++    E           R+ ++ 
Sbjct: 56  DRLALIDQHGRHTYKDLYLRSLRLSREICQ--LRACADGDLREE----------RVSLLC 103

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L  VA K
Sbjct: 104 SNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELLSPVAQK 163

Query: 136 SGAKFSLIPPVPNVSSETTVF-----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
            G        VP +    TV+     D  +   ++    +  A+I+YTSGTTG+PKGV+ 
Sbjct: 164 LG--------VPLLPLPPTVYHGVAEDPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVLS 215

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS + 
Sbjct: 216 THDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQL 275

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLRL 307
           +W+++  S           I  F  VPT+Y++L+  Y+   T+        A   +++RL
Sbjct: 276 VWEKFLSS-------EAPQINVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIRL 328

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVS 367
           M+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V 
Sbjct: 329 MVSGSAALPLPVLEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEVR 388

Query: 368 MI 369
           ++
Sbjct: 389 IV 390

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GLK6|ACSF3_XENLA Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1

 Score =  234 bits (597), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 179/303 (59%), Gaps = 11/303 (3%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +   +  +V      W SG IAVPL  S+P SEL +V+ DS  ++V++ E Y  VL
Sbjct: 98  RVSFLCPNNSSYVVCQWAVWMSGAIAVPLCKSHPPSELKYVLQDSQSALVVAEESYTNVL 157

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +A + G     +    N+   + +  + +  ++D    +  A+I+YTSGTTG+PKGV+
Sbjct: 158 SPLAEQLGIPVLTMSGSQNLHP-SELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVL 216

Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
            TH ++ + V  L   W +T  D  LH LPLHHVHG+ N L+ PL+ GAT   +P+F  +
Sbjct: 217 STHYNLYSMVTALVNEWGWTKEDSILHVLPLHHVHGVVNKLMCPLWVGATCVILPEFCPK 276

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE---LQAASASAAKQLR 306
            +WQ +         R   +I  F  VPT+Y++LI  YE   T     +   A+  +++R
Sbjct: 277 TVWQHFL-------GRDVPSINIFMAVPTIYSKLIAYYEQHFTHSNVREFVRAACQERIR 329

Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           LM+ GSSALP+PV+++W+ ITGH LLERYGMTE  MA++NPL G R  G VG PLPGV+V
Sbjct: 330 LMVSGSSALPVPVLERWQEITGHTLLERYGMTEIGMALTNPLHGPRVPGAVGAPLPGVEV 389

Query: 367 SMI 369
             +
Sbjct: 390 RTV 392

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. May have some preference toward very-long-chain substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3URE1|ACSF3_MOUSE Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2

 Score =  231 bits (589), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 179/303 (59%), Gaps = 13/303 (4%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct: 97  RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG +
Sbjct: 157 SPLAQRLGV--PLLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213

Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
            TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct: 214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLR 306
            +W+++  S           IT F  VPT+Y++L+  Y+   T+        A   +++R
Sbjct: 274 QVWEKFLSS-------EAPQITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326

Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           LM+ GS+ALP+P++++W + TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct: 327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEV 386

Query: 367 SMI 369
            +I
Sbjct: 387 RII 389

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfA PE=3 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 167/390 (42%), Gaps = 76/390 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI    K  ++  + + AL++++ L  N L+      K +  AV+   C        
Sbjct: 39  DKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQ------KGDRVAVMLPNCP------- 85

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------------- 120
               + V    G  F+G I V     Y E EL + + D+ +S+++               
Sbjct: 86  ----QTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTL 141

Query: 121 ---------STEDY----REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE----- 162
                    S +DY    + +L  +  K            N+ +  +   Q + E     
Sbjct: 142 SIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDF-DKTANIHTFASCMKQEKTELLTIP 200

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT---SADQFLHCLP 219
           K+D +   D A++ YT GTTG PKGV+ TH++I A  +M   AW Y     A++ L  +P
Sbjct: 201 KIDPEH--DIAVLQYTGGTTGAPKGVMLTHQNILANTEMCA-AWMYDVKEGAEKVLGIVP 257

Query: 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
             HV+GL   +   +  G  +  +PKF      +   +  P          T F G PT+
Sbjct: 258 FFHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKP----------TLFPGAPTI 307

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
           Y  L+        ELQ    S+ K     + GS+ALP+ V Q++E +TG +L+E YG++E
Sbjct: 308 YIGLLH-----HPELQHYDLSSIKSC---LSGSAALPVEVKQKFEKVTGGKLVEGYGLSE 359

Query: 340 FV-MAISNPLRGARKAGTVGNPLPGVQVSM 368
              +  +N + G  K G++G P P    ++
Sbjct: 360 ASPVTHANFIWGKNKPGSIGCPWPSTDAAI 389

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2

 Score =  105 bits (261), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 165/371 (44%), Gaps = 53/371 (14%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           DS+A R      +Y +L     R +  L    ++      K ++ A+L G          
Sbjct: 16  DSIACRFKDHMMTYQELNEYIQRFADGLQEAGME------KGDHLALLLGN--------- 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S +F+    G   +G + VP+   Y  +E+ +++ + D+  ++       + +++  +
Sbjct: 61  --SPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESM-HE 117

Query: 136 SGAKFSLI---------PPV--PNVSSETTVFDQ-----SQAEKMDGQRGEDPALIVYTS 179
           S  K  L+         P    P V  + T F +     S A++      +D A+I+YTS
Sbjct: 118 SLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTS 177

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTGKPKG + TH+++ +    +         D  +  LP+ HV  L   + APL +GAT
Sbjct: 178 GTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGAT 237

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
           V   P+FS   +++  ++          +  T F GVPTMY  L Q       +  +   
Sbjct: 238 VLIEPQFSPASVFKLVKQ----------QQATIFAGVPTMYNYLFQHENGKKDDFSS--- 284

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV-MAISNPLRGARKAGTVG 358
                +RL + G +++P+ ++  +E   G  +LE YG++E   +   NP    RK G++G
Sbjct: 285 -----IRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRGRKPGSIG 339

Query: 359 NPLPGVQVSMI 369
             +  V+  ++
Sbjct: 340 TSILHVENKVV 350

Involved in the degradation of long-chain fatty acids.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|B5XUP2|AAS_KLEP3 Bifunctional protein aas OS=Klebsiella pneumoniae (strain 342) GN=aas PE=3 SV=1

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 100/211 (47%), Gaps = 35/211 (16%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED A+I++TSG+ G PKGVVH+HKS+ A V+ +    ++T+ D+F+  LPL H  GL
Sbjct: 362 QQPEDAAMILFTSGSEGNPKGVVHSHKSLLANVEQIKTIADFTANDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              LL PL+ GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLLTPLFTGAEVFLYPS--------------PLHYRVVPELVYDRNCTVLFGTSTFLA 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFY-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E    +S  +  A K GTVG  LPG+   ++
Sbjct: 515 ECAPVVSINVPMAAKVGTVGRILPGMDARLL 545

Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|B5BFH6|AAS_SALPK Bifunctional protein aas OS=Salmonella paratyphi A (strain AKU_12601) GN=aas PE=3 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 35/211 (16%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+  LPL H  GL
Sbjct: 362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              L  PL  GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFY-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E    +S  +  A K GTVG  LPG+   ++
Sbjct: 515 ECAPVVSINVPMAAKPGTVGRILPGMDARLL 545

Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.

Salmonella paratyphi A (strain AKU_12601) (taxid: 554290)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q5PEN7|AAS_SALPA Bifunctional protein aas OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=aas PE=3 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 35/211 (16%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+  LPL H  GL
Sbjct: 362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              L  PL  GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFY-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E    +S  +  A K GTVG  LPG+   ++
Sbjct: 515 ECAPVVSINVPMAAKPGTVGRILPGMDARLL 545

Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.

Salmonella paratyphi A (strain ATCC 9150 / SARB42) (taxid: 295319)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
225442581	552	PREDICTED: acyl-CoA synthetase family me	0.989	0.666	0.746	1e-154
21536867	544	putative long-chain acyl-CoA synthetase	0.981	0.670	0.708	1e-151
380042380	564	acyl-activating enzyme 10 [Cannabis sati	0.991	0.654	0.695	1e-151
9294464	608	long-chain-fatty-acid-CoA ligase-like pr	0.981	0.600	0.706	1e-151
297830202	608	hypothetical protein ARALYDRAFT_318392 [	0.981	0.600	0.705	1e-151
18401035	544	putative long-chain acyl-CoA synthetase	0.981	0.670	0.706	1e-151
224054376	539	predicted protein [Populus trichocarpa]	0.962	0.664	0.715	1e-150
297743247	583	unnamed protein product [Vitis vinifera]	0.989	0.631	0.689	1e-149
449507752	610	PREDICTED: malonate--CoA ligase-like [Cu	0.962	0.586	0.671	1e-147
449463158	610	PREDICTED: malonate--CoA ligase-like [Cu	0.962	0.586	0.671	1e-147

>gi|225442581|ref|XP_002279139.1| PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Vitis vinifera]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/375 (74%), Positives = 322/375 (85%), Gaps = 7/375 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  ++GS   +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T   +K+++S
Sbjct: 1   MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61  GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
           STEDYRE+++NVA+KS A+FSLIPPVP++ S T+  D  Q       + + G+  EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLHHVHGLFNALLAPL
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHVHGLFNALLAPL 239

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
           YAG+TVEFMPKFSVRGIWQRWRES+P +G +  +AIT FTGVPTMYTRLIQGYEAMD EL
Sbjct: 240 YAGSTVEFMPKFSVRGIWQRWRESHPKDGTKVDDAITVFTGVPTMYTRLIQGYEAMDPEL 299

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA 354
           QAASASAA +LRLMMCGSSALP PVMQQWETITGHRLLERYGMTEFVMAISNPL+G RK 
Sbjct: 300 QAASASAASKLRLMMCGSSALPYPVMQQWETITGHRLLERYGMTEFVMAISNPLKGVRKG 359

Query: 355 GTVGNPLPGVQVSMI 369
           GTVG P PGVQV ++
Sbjct: 360 GTVGKPFPGVQVKIL 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536867|gb|AAM61199.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/371 (70%), Positives = 305/371 (82%), Gaps = 6/371 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGARKAGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARKAGTV 357

Query: 358 GNPLPGVQVSM 368
           G PLPGV+  +
Sbjct: 358 GKPLPGVEAKI 368

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042380|gb|AFD33354.1| acyl-activating enzyme 10 [Cannabis sativa]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/384 (69%), Positives = 302/384 (78%), Gaps = 15/384 (3%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K   K+GS AR+ VAIRADQKSYSY QL SSA  I SLLC  +LK   E  K    
Sbjct: 1   MEVLKEVAKEGSAAREGVAIRADQKSYSYKQLISSAQSICSLLCGTELKAIHEAGKQARP 60

Query: 61  AV-------LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHD 113
           +             GARIGIVAKPS EFVAGVLGTW SG +AVPLALSYPE+ELLHVM+D
Sbjct: 61  SASINGAGGHGHLGGARIGIVAKPSAEFVAGVLGTWLSGGVAVPLALSYPEAELLHVMND 120

Query: 114 SDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR----- 168
           SDISM+LSTED++E++QN+A+K+ A+FSLIP VP+  S+    D  Q   +         
Sbjct: 121 SDISMILSTEDHQELMQNIAAKTSAQFSLIPSVPSSCSQEVAVDHRQTGDISTDSILLNR 180

Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               E+PALIVYTSGTTGKPKGVVHTH+SI AQVQ L +AWEYT ADQFLHCLPLHHVHG
Sbjct: 181 EISNENPALIVYTSGTTGKPKGVVHTHQSISAQVQTLAKAWEYTPADQFLHCLPLHHVHG 240

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
           LFNAL APLYA +TVEF+PKFSVRGIWQRWRESYP +  +A + IT FTGVPTMYTRLIQ
Sbjct: 241 LFNALFAPLYARSTVEFLPKFSVRGIWQRWRESYPTSETKANDCITVFTGVPTMYTRLIQ 300

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           GYEAMD EL+ ASASAAKQLRLMMCGSSALP+PVMQQW+TITGHRLLERYGMTEFVMAIS
Sbjct: 301 GYEAMDPELKEASASAAKQLRLMMCGSSALPVPVMQQWQTITGHRLLERYGMTEFVMAIS 360

Query: 346 NPLRGARKAGTVGNPLPGVQVSMI 369
           NPL+G RK+GTVG P PGV+V ++
Sbjct: 361 NPLKGERKSGTVGKPFPGVEVRIL 384

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294464|dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [Arabidopsis thaliana]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/371 (70%), Positives = 304/371 (81%), Gaps = 6/371 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 65  MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 124

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 125 FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 181

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 182 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 241

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 242 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 301

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 302 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 361

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 362 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 421

Query: 358 GNPLPGVQVSM 368
           G PLPGV+  +
Sbjct: 422 GKPLPGVEAKI 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830202|ref|XP_002882983.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata] gi|297328823|gb|EFH59242.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/370 (70%), Positives = 301/370 (81%), Gaps = 5/370 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEVFKAA+ +GS + D +AI+AD KSYSY QL SSA RIS L  + D     E  K E  
Sbjct: 66  MEVFKAAFSEGSNSCDRIAIKADGKSYSYGQLTSSAFRISKLFSNEDTTNGGETKKYEGF 125

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
             L G   ARIGIVAKPS EFVAGV+GTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 126 GSLKG---ARIGIVAKPSAEFVAGVMGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
           STED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGAQFHLIPPVVNSTSETVARNQFQDDSFEAEGKFLDDPALIVYT 242

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTGKPKGVVHTH SI++QV+MLTEAWEYTS D FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVKMLTEAWEYTSTDHFLHCLPLHHVHGLFNALFAPLYARS 302

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
            VEF+PKFSV GIW+RWRESYP N  +  +AIT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPQNDEKNNDAITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
           A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGARKAGTVG
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARKAGTVG 422

Query: 359 NPLPGVQVSM 368
            PLPGV+  +
Sbjct: 423 KPLPGVEAKI 432

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401035|ref|NP_566537.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|75299745|sp|Q8H151.1|AAE13_ARATH RecName: Full=Malonate--CoA ligase; AltName: Full=Acyl-activating enzyme 13; AltName: Full=Malonyl-CoA synthetase gi|23397257|gb|AAN31910.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|29893233|gb|AAP03025.1| acyl-activating enzyme 13 [Arabidopsis thaliana] gi|332642258|gb|AEE75779.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/371 (70%), Positives = 304/371 (81%), Gaps = 6/371 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query: 358 GNPLPGVQVSM 368
           G PLPGV+  +
Sbjct: 358 GKPLPGVEAKI 368

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054376|ref|XP_002298229.1| predicted protein [Populus trichocarpa] gi|222845487|gb|EEE83034.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/372 (71%), Positives = 308/372 (82%), Gaps = 14/372 (3%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K  Y++G+ A DS+AIRA+ KSYSY QL SSA  IS LLC++ L+T          
Sbjct: 1   MEVVKKVYRQGTAAADSIAIRAEHKSYSYKQLISSAWEISDLLCNSGLETVDG------- 53

Query: 61  AVLAGGC----GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
               GGC    GARIGIVAKPS EFVAG+L TWFSG +AVPLALSYPE+ELLHVM+D++I
Sbjct: 54  ---VGGCKHLGGARIGIVAKPSAEFVAGILATWFSGGVAVPLALSYPETELLHVMNDAEI 110

Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
           SMVLSTED++E++QNVA K  A+FSLIP V  +SS  +V D SQ E++  ++G+DPALI+
Sbjct: 111 SMVLSTEDHQELMQNVADKCAAQFSLIPSVHRISSHESVHDHSQVEEIALEKGDDPALII 170

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           YTSGTTGKPKG VHTHKSI AQVQ L EAWEY+S DQFL+CLPLHHVHG FN+L AP+YA
Sbjct: 171 YTSGTTGKPKGAVHTHKSITAQVQTLAEAWEYSSTDQFLNCLPLHHVHGFFNSLFAPIYA 230

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           G+TVEFMPKFSVRGIWQRWRESYP NG++A +AIT FTGVPT+Y+RLIQGY AMD++ QA
Sbjct: 231 GSTVEFMPKFSVRGIWQRWRESYPPNGSKADDAITVFTGVPTIYSRLIQGYGAMDSDQQA 290

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT 356
           ASASAA+QLRLMM GSSALPLPVMQ+WE ITGHRLLERYGMTEFVMAISNPLRG RKAGT
Sbjct: 291 ASASAARQLRLMMSGSSALPLPVMQEWEAITGHRLLERYGMTEFVMAISNPLRGVRKAGT 350

Query: 357 VGNPLPGVQVSM 368
           VG P PGVQV +
Sbjct: 351 VGKPFPGVQVKI 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743247|emb|CBI36114.3| unnamed protein product [Vitis vinifera]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/406 (68%), Positives = 322/406 (79%), Gaps = 38/406 (9%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  ++GS   +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T   +K+++S
Sbjct: 1   MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61  GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
           STEDYRE+++NVA+KS A+FSLIPPVP++ S T+  D  Q       + + G+  EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH------------- 221
           I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLH             
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHIHKTIFRILKIS 239

Query: 222 ------------------HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNG 263
                             HVHGLFNALLAPLYAG+TVEFMPKFSVRGIWQRWRES+P +G
Sbjct: 240 ISHNFDMKFLHGSLTLTIHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESHPKDG 299

Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
            +  +AIT FTGVPTMYTRLIQGYEAMD ELQAASASAA +LRLMMCGSSALP PVMQQW
Sbjct: 300 TKVDDAITVFTGVPTMYTRLIQGYEAMDPELQAASASAASKLRLMMCGSSALPYPVMQQW 359

Query: 324 ETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           ETITGHRLLERYGMTEFVMAISNPL+G RK GTVG P PGVQV ++
Sbjct: 360 ETITGHRLLERYGMTEFVMAISNPLKGVRKGGTVGKPFPGVQVKIL 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507752|ref|XP_004163121.1| PREDICTED: malonate--CoA ligase-like [Cucumis sativus]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/381 (67%), Positives = 304/381 (79%), Gaps = 23/381 (6%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K+A K G+  R++VAIRA+QKS+SY QL SSAL+IS LL S+DL+T          
Sbjct: 62  MEVVKSAAKHGATCRENVAIRANQKSHSYIQLISSALKISDLLTSSDLRTGHGHLG---- 117

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GA+IGIVAKPS EF+AGVLGTWFSG +AVPLALSYPE+ELLHV++DS++SM+L
Sbjct: 118 -------GAKIGIVAKPSAEFLAGVLGTWFSGGVAVPLALSYPEAELLHVLNDSEVSMIL 170

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS---QAEKMDGQR--------- 168
           STED+ E +Q+VA+K+ A  SLIPPVP++ SE    DQS   + +  D  R         
Sbjct: 171 STEDHVEFMQSVAAKTVATVSLIPPVPHIYSERNSHDQSTNIEVDAADADRVFQGTVENL 230

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +DPALI+YTSGTTGKPKGVVHTHKSI +QVQML+ AWEYTSADQFLHCLPLHHVHGLFN
Sbjct: 231 SDDPALIIYTSGTTGKPKGVVHTHKSITSQVQMLSNAWEYTSADQFLHCLPLHHVHGLFN 290

Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
            LLAP+YAG+TVEFMPKFSV GIW+RWRESYP   +++ +AIT FTGVPTMY RL+QGYE
Sbjct: 291 GLLAPIYAGSTVEFMPKFSVSGIWKRWRESYPSKSSKSDDAITVFTGVPTMYARLLQGYE 350

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL 348
           AMD+ELQ ASASAA+QLRLMMCGSSALP P+M+QW+ +TGH LLERYGMTEFVMAISNPL
Sbjct: 351 AMDSELQLASASAARQLRLMMCGSSALPPPIMKQWKEVTGHELLERYGMTEFVMAISNPL 410

Query: 349 RGARKAGTVGNPLPGVQVSMI 369
            G RK GTVG P PGV+  ++
Sbjct: 411 NGQRKIGTVGKPFPGVEAKIV 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463158|ref|XP_004149301.1| PREDICTED: malonate--CoA ligase-like [Cucumis sativus]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/381 (67%), Positives = 304/381 (79%), Gaps = 23/381 (6%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K+A K G+  R++VAIRA+QKS+SY QL SSAL+IS LL S+DL+T          
Sbjct: 62  MEVVKSAAKHGATCRENVAIRANQKSHSYIQLISSALKISDLLTSSDLRTGHGHLG---- 117

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GA+IGIVAKPS EF+AGVLGTWFSG +AVPLALSYPE+ELLHV++DS++SM+L
Sbjct: 118 -------GAKIGIVAKPSAEFLAGVLGTWFSGGVAVPLALSYPEAELLHVLNDSEVSMIL 170

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS---QAEKMDGQR--------- 168
           STED+ E +Q+VA+K+ A  SLIPPVP++ SE    DQS   + +  D  R         
Sbjct: 171 STEDHVEFMQSVAAKTVATVSLIPPVPHIYSERNSHDQSTNIEVDAADADRVFQGTVENL 230

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +DPALI+YTSGTTGKPKGVVHTHKSI +QVQML+ AWEYTSADQFLHCLPLHHVHGLFN
Sbjct: 231 SDDPALIIYTSGTTGKPKGVVHTHKSITSQVQMLSNAWEYTSADQFLHCLPLHHVHGLFN 290

Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
            LLAP+YAG+TVEFMPKFSV GIW+RWRESYP   +++ +AIT FTGVPTMY RL+QGYE
Sbjct: 291 GLLAPIYAGSTVEFMPKFSVSGIWKRWRESYPSKSSKSDDAITVFTGVPTMYARLLQGYE 350

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL 348
           AMD+ELQ ASASAA+QLRLMMCGSSALP P+M+QW+ +TGH LLERYGMTEFVMAISNPL
Sbjct: 351 AMDSELQLASASAARQLRLMMCGSSALPPPIMKQWKEVTGHELLERYGMTEFVMAISNPL 410

Query: 349 RGARKAGTVGNPLPGVQVSMI 369
            G RK GTVG P PGV+  ++
Sbjct: 411 NGQRKIGTVGKPFPGVEAKIV 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2093432	544	AAE13 "acyl activating enzyme	0.981	0.670	0.671	7.3e-130
UNIPROTKB|Q4G176	576	ACSF3 "Acyl-CoA synthetase fam	0.779	0.503	0.417	7.5e-57
MGI|MGI:2182591	583	Acsf3 "acyl-CoA synthetase fam	0.779	0.497	0.412	1.2e-56
UNIPROTKB|Q58DN7	586	ACSF3 "Acyl-CoA synthetase fam	0.779	0.494	0.415	2.5e-56
UNIPROTKB|F1NXK4	456	ACSF3 "Uncharacterized protein	0.771	0.629	0.407	1.8e-55
RGD|1586037	583	Acsf3 "acyl-CoA synthetase fam	0.776	0.495	0.404	2.3e-55
UNIPROTKB|F1P6L8	600	ACSF3 "Uncharacterized protein	0.766	0.475	0.415	4.8e-55
UNIPROTKB|I3LK72	442	ACSF3 "Uncharacterized protein	0.836	0.703	0.374	7.2e-52
DICTYBASE|DDB_G0289539	546	DDB_G0289539 "Acyl-CoA synthet	0.790	0.538	0.396	4e-51
ASPGD|ASPL0000061619	533	AN0562 [Emericella nidulans (t	0.766	0.534	0.4	2.8e-50

TAIR|locus:2093432 AAE13 "acyl activating enzyme 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
 Identities = 249/371 (67%), Positives = 290/371 (78%)

Query:     1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQXXXXXXXXXXXXXXNDLKTTSEKTKN-EN 59
             MEVFKAA+ + S + D +AI+AD KSYSY Q              +D     ++TK  E 
Sbjct:     1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query:    60 SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct:    61 FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query:   120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
             LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct:   118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query:   178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
             TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct:   178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query:   238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXX 297
             + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q  
Sbjct:   238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query:   298 XXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
                  ++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct:   298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query:   358 GNPLPGVQVSM 368
             G PLPGV+  +
Sbjct:   358 GKPLPGVEAKI 368

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IDA

GO:0090410 "malonate catabolic process" evidence=IMP

UNIPROTKB|Q4G176 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 127/304 (41%), Positives = 181/304 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L
Sbjct:    97 RVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELL 156

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+
Sbjct:   157 SPVVRKLGVP--LLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVL 213

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL+ GAT   MP+FS +
Sbjct:   214 STHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQ 273

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQLR 306
              +W+++  S           I  F  VPT+YT+L++ Y+   T+            +++R
Sbjct:   274 QVWEKFLSSETPR-------INVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIR 326

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQ 365
             LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+S PL  A R  G+VG PLPGVQ
Sbjct:   327 LMVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQ 386

Query:   366 VSMI 369
             V ++
Sbjct:   387 VRIV 390

GO:0005524 "ATP binding" evidence=IEA

GO:0016878 "acid-thiol ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0090410 "malonate catabolic process" evidence=IDA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:2182591 Acsf3 "acyl-CoA synthetase family member 3" [Mus musculus (taxid:10090)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 125/303 (41%), Positives = 182/303 (60%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct:    97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG +
Sbjct:   157 SPLAQRLGVP--LLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct:   214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
              +W+++  S       A + IT F  VPT+Y++L+  Y+   T+  +Q       K+ +R
Sbjct:   274 QVWEKFLSS------EAPQ-ITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
             LM+ GS+ALP+P++++W + TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct:   327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEV 386

Query:   367 SMI 369
              +I
Sbjct:   387 RII 389

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016878 "acid-thiol ligase activity" evidence=ISO

GO:0090409 "malonyl-CoA synthetase activity" evidence=ISO

GO:0090410 "malonate catabolic process" evidence=ISO

UNIPROTKB|Q58DN7 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 126/303 (41%), Positives = 182/303 (60%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+ ++      FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L
Sbjct:    98 RVSLLCSNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELL 157

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               VA K G    L+P  P V       D  +   ++    +  A+I+YTSGTTG+PKGV+
Sbjct:   158 SPVAQKLGVP--LLPLPPTVYHGVAE-DPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVL 214

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct:   215 STHDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 274

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
              +W+++  S       A + I  F  VPT+Y++L+  Y+   T+  +Q       ++ +R
Sbjct:   275 LVWEKFLSS------EAPQ-INVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIR 327

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
             LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct:   328 LMVSGSAALPLPVLEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEV 387

Query:   367 SMI 369
              ++
Sbjct:   388 RIV 390

GO:0005739 "mitochondrion" evidence=IEA

GO:0090410 "malonate catabolic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NXK4 ACSF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 123/302 (40%), Positives = 179/302 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             RI  +      +V     +W SG IAVPL   +P  +L +V+ DS  ++V++ ++Y   +
Sbjct:    88 RISFLCPNDASYVVAQWASWMSGGIAVPLYKKHPVQQLEYVLEDSQSALVIAADEYVGKI 147

Query:   130 QNVASKSGAKFSLIPPVPNVSSE-TTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKG 187
                A K G     +    + S++ T V D   A     + RG   A+I+YTSGTTG+PKG
Sbjct:   148 SPSAKKLGVPVLPLRSHSSGSADHTAVEDVPLASSASWKDRG---AMIIYTSGTTGRPKG 204

Query:   188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
             V+ TH+++ A    L E WE+   D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS
Sbjct:   205 VLSTHENVQAVTTGLVEKWEWKQDDVILHVLPLHHVHGVINKLLCPLWVGATCIMLPEFS 264

Query:   248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQ 304
              + +W+++  S           ++ F  VPT+Y +LI+ Y+   ++ Q          + 
Sbjct:   265 AQMVWKKFLSSQ-------APRVSVFMAVPTIYAKLIEYYDEHFSQPQVQDFVRAFCQEN 317

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV 364
             +RLM+ GS+ALP+PV+++W+ ITGH LLERYGMTE  MA+SNPLRG R  G+VG PLPGV
Sbjct:   318 IRLMVSGSAALPVPVLKKWKAITGHTLLERYGMTEIGMALSNPLRGVRVPGSVGTPLPGV 377

Query:   365 QV 366
             +V
Sbjct:   378 EV 379

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0090410 "malonate catabolic process" evidence=IEA

RGD|1586037 Acsf3 "acyl-CoA synthetase family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 123/304 (40%), Positives = 186/304 (61%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct:    97 RVSFLCSNDVSYVIAQWASWMSGGVAVPLYRKHPEAQLEYFIQDSRSSVVVVGQEYLERL 156

Query:   130 QNVASKSGAKF-SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
               +A + G     L P V + ++E  + +Q   E+    RG   A+I YTSGTTG+PKG 
Sbjct:   157 SPLAQRLGVPLLPLTPAVYHGAAEKPI-EQPIQEREWRDRG---AMIFYTSGTTGRPKGA 212

Query:   189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
             + TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS 
Sbjct:   213 LSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSA 272

Query:   249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-L 305
             + +W+++  S       A + I  F  VPT+Y++L+  Y+   T+  +Q       K+ +
Sbjct:   273 QQVWEKFLSS------EAPQ-INMFMAVPTIYSKLLDYYDRHFTQSHVQDFVRAVCKERI 325

Query:   306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
             RLM+ GS+ALP+P++++W++ TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+
Sbjct:   326 RLMVSGSAALPVPLLEKWKSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVE 385

Query:   366 VSMI 369
             V ++
Sbjct:   386 VRIV 389

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISO

GO:0016878 "acid-thiol ligase activity" evidence=ISO

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA;ISO

GO:0090410 "malonate catabolic process" evidence=IEA;ISO

UNIPROTKB|F1P6L8 ACSF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 128/308 (41%), Positives = 186/308 (60%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG IAVPL   +P +EL + + DS  S+VL+ ++Y E+L
Sbjct:   102 RVSFLCSNDVSYVVAQWASWMSGGIAVPLYKKHPPAELEYFIRDSRSSVVLAGQEYMELL 161

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG----QRGEDP-ALIVYTSGTTGK 184
             + V  K G     +P +P +SS  TV+  +  E  +G    Q   D  A+I+YTSGTTG+
Sbjct:   162 RPVVKKLG-----VPLLP-LSS--TVYGAAAEEPGEGKVWEQNWRDRGAMIMYTSGTTGR 213

Query:   185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
             PKGV+ TH +I A V  L   W ++  D  LH LPLHHVHG+ N LL PL+ GAT   +P
Sbjct:   214 PKGVLSTHHNIRAMVTGLVHKWAWSKHDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLP 273

Query:   245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXX 302
             +F+ + +W++      + G      I  F  VPT+Y +L+  Y+   T+  +Q       
Sbjct:   274 EFNAQLVWEK------LLGCETPR-INVFMAVPTIYAKLMDYYDRHFTQPHVQDFVRAVC 326

Query:   303 KQ-LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPL 361
             ++ +RLM+ GS+ALPLPV+++W++ITGH LLERYGMTE  MA+SNPL   R  G+VG PL
Sbjct:   327 EERIRLMVSGSAALPLPVLEKWQSITGHTLLERYGMTEIGMALSNPLTTVRVPGSVGTPL 386

Query:   362 PGVQVSMI 369
             PGV+V ++
Sbjct:   387 PGVEVRIV 394

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|I3LK72 ACSF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 124/331 (37%), Positives = 186/331 (56%)

Query:    47 DLKTTSEKTKNENSAVLAGGCG----ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
             DL + S +   E  A+ A   G     R+ ++      +V  +  TW SG +AVPL   +
Sbjct:    72 DLYSRSLRLSREICALRACADGDLREERVSLLCANDASYVVALWATWMSGGVAVPLYRKH 131

Query:   103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQA 161
             P ++L + + DS  S+VL+  ++  VL  V  K G    L+P  P V           + 
Sbjct:   132 PPAQLEYFIRDSRSSVVLAGPEHAGVLGPVVGKLGVP--LLPLSPEVYLGAAEAPGAGRV 189

Query:   162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
              + D ++    A I+YTSGTTG+PKG++ TH++++A V  L   W +T  D  LH LPLH
Sbjct:   190 PERDWRKRA--ATIIYTSGTTGRPKGLLSTHRNLEAVVTGLVRKWAWTQDDVILHVLPLH 247

Query:   222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
             HVHGL N LL PL+ GA    +P+FS + +W+++    P         +  F  VPT+Y+
Sbjct:   248 HVHGLVNKLLCPLWVGAACVMLPEFSAQQVWEKFLS--P-----EAPRVNVFMAVPTIYS 300

Query:   282 RLIQGYEAMDTELQXXXXXXX---KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
             +L+  ++   T+            +++RLM+ GS+ALPLPV+++WE +TGH LLERYGMT
Sbjct:   301 KLMDYHDRHFTQPHVRDFVRAVCEEKIRLMVSGSAALPLPVLEKWEGVTGHTLLERYGMT 360

Query:   339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
             E  MA+SN L   R  G+VG PLPGV+V ++
Sbjct:   361 EIGMALSNSLT-TRLPGSVGTPLPGVEVRIV 390

GO:0090410 "malonate catabolic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0289539 DDB_G0289539 "Acyl-CoA synthetase family member 3, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 121/305 (39%), Positives = 176/305 (57%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+      +F++V    G W +G  AVPLALS+P  EL + + +S  SM+L+  +    +
Sbjct:    64 RVAYFFGQNFDYVRSQWGIWAAGGTAVPLALSHPIHELQYTIENSKSSMILTNSENYSKM 123

Query:   130 QNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
             + + +        IP V   +   S+ +  +  +   +D  R    ALI+YTSGTT KPK
Sbjct:   124 KEIGTNLNIPVIEIPKVGEYTIPKSQWSSMEDYKQYSIDSNRN---ALIIYTSGTTSKPK 180

Query:   187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
             GVV TH +I+AQ+Q L + W++T  D  L  LPLHHVHG+ N +   L++GA  E MPKF
Sbjct:   181 GVVTTHANIEAQIQTLVDYWKWTEKDHILEVLPLHHVHGVINVVSCALWSGAICEMMPKF 240

Query:   247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ--GYEAMDTELQXXXXXXXKQ 304
               + +  R  ES  ++ +   + I+ F  VPT+Y++LI+       D   +       K+
Sbjct:   241 DSKQVVDRLLES-GISTD-LDQPISLFMAVPTIYSKLIKYVNENITDPTERLAIENAFKR 298

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG 363
             LRLM+ GSSALP  V  +++ I+G  LLERYGMTE  MA+SNPL+   R  GTVG PLPG
Sbjct:   299 LRLMVSGSSALPESVRNEFQAISGQVLLERYGMTEIGMALSNPLKVNERIGGTVGFPLPG 358

Query:   364 VQVSM 368
             VQ+ +
Sbjct:   359 VQIKI 363

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ASPGD|ASPL0000061619 AN0562 [Emericella nidulans (taxid:162425)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 122/305 (40%), Positives = 166/305 (54%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL---STEDYR 126
             RI  +    +++       W SG I VPL  S+P  ELL+ + DSD S+++   + E + 
Sbjct:    69 RIAFLVPNGYDYAVTQWAVWASGGICVPLCTSHPVKELLYTIGDSDPSLIIIHPAFEKFE 128

Query:   127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
               L+   + +   F  + P     S   + + S          E  AL++YTSGTTGKPK
Sbjct:   129 APLREGTADTPRLFMTLTPFTQSPSPPQLPEFSPV-----YYPERRALMIYTSGTTGKPK 183

Query:   187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
             G + THK+I  Q Q L +AW+Y   D  +H LPLHH+HG+ N L A L AGATVE  PKF
Sbjct:   184 GAITTHKTITFQAQCLIQAWQYQPTDHLIHVLPLHHIHGIINGLTATLLAGATVEMYPKF 243

Query:   247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--MDTELQXXXXXXXKQ 304
                 IW RW        N+     T F  VPT+Y+RL+  +EA    TE +         
Sbjct:   244 DPATIWTRWT-------NKGSS--TMFFAVPTIYSRLVDYFEAHIRGTEQETPAREGAAA 294

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNPLPG 363
             LRL++ GS+ALP P+  ++ TIT   LLERYGMTE  M +S  L  A++  G+VG PLPG
Sbjct:   295 LRLLVSGSAALPTPIKTKFATITNQTLLERYGMTEIGMGLSCGLDVAQRIDGSVGWPLPG 354

Query:   364 VQVSM 368
             VQV +
Sbjct:   355 VQVRL 359

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H151	AAE13_ARATH	6, ., 2, ., 1, ., n, 3	0.7061	0.9811	0.6709	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-125
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	5e-61
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-59
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-59
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-56
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-54
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-49
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-42
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	9e-40
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	6e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	4e-37
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	8e-37
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-36
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-36
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-34
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	7e-33
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	5e-32
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	6e-32
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-31
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	4e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-30
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	5e-30
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-29
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-29
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-29
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-28
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-28
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-27
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-27
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-27
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-26
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-26
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-26
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-25
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-25
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-24
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-23
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-23
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-22
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-22
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-21
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-20
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-20
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-19
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-19
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-19
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	8e-19
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	8e-19
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-18
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-18
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-18
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	2e-18
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-18
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-18
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-17
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-17
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-17
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-17
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	4e-17
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-17
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	5e-17
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	8e-17
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-16
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-16
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-16
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-16
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-16
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-15
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	7e-15
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-14
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-14
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-14
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	5e-14
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	7e-14
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	8e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	8e-14
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-13
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-13
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-13
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	5e-13
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	5e-13
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	5e-13
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-13
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	6e-13
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-12
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-12
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-12
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-12
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-12
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-12
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-12
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	4e-12
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	5e-12
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-12
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-12
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-12
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	7e-12
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-12
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	9e-12
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	9e-12
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-11
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	1e-11
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-11
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-10
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	6e-10
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	6e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-09
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-09
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-09
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-09
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	3e-09
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-09
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	4e-09
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-09
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	5e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	6e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	7e-09
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	8e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-09
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	8e-09
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-08
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-08
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	5e-08
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	6e-08
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	7e-08
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	8e-08
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-07
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-07
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-07
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	7e-07
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	7e-07
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-06
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-06
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-05
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-05
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	4e-05
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	5e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	6e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	6e-05
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	6e-05
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	7e-05
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	9e-05
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-04
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	0.001
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	0.001
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.002
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.003
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.003
TIGR02372	386	TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase	0.003

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  365 bits (940), Expect = e-125
 Identities = 141/351 (40%), Positives = 193/351 (54%), Gaps = 82/351 (23%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+    +S +Y +L + + R++  L +  L                   G R+ ++A
Sbjct: 1   DRIALVDGGRSLTYGELDARSGRLAKALLALGLLP-----------------GDRVAVLA 43

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E+V   L  W +G +AVPL  SYP +EL +++ DS  S+++               
Sbjct: 44  PKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV--------------- 88

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                              DPALI+YTSGTTG+PKGVV TH ++
Sbjct: 89  -----------------------------------DPALIIYTSGTTGRPKGVVLTHGNL 113

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
            A  + L EAW +T++D  LH LPLHHVHGLFNAL  PL+AGA+VEF+P+F  +      
Sbjct: 114 AANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQ------ 167

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                 +  R    IT F GVPT+YTRL++ YE  D     A+A+AA+ LRL + GS+AL
Sbjct: 168 ----ERDALRLLPRITVFMGVPTIYTRLLEHYEFDD-----AAAAAARNLRLFVSGSAAL 218

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           P+PV+++WE  TGH LLERYGMTE  MA+SNPL G R+ GTVG PLPGV+V
Sbjct: 219 PVPVLERWEERTGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEV 269

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  203 bits (520), Expect = 5e-61
 Identities = 113/368 (30%), Positives = 180/368 (48%), Gaps = 49/368 (13%)

Query: 6   AAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLA 64
            A +     RD+  I   D   Y+Y  L +++ R+++LL +  +K               
Sbjct: 7   DALRAAFADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKP-------------- 52

Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
              G R+ +  + S E +A  L T  +G + +PL  +Y  +EL + + D++ ++V+    
Sbjct: 53  ---GDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPA 109

Query: 125 YREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQAEKMDGQ----RGEDPALIVYT 178
               L  +A+ +GA    +L     +     ++ + + A   D +      +D A I+YT
Sbjct: 110 NFAWLSKIAAAAGAPHVETL-----DADGTGSLLEAAAAAPDDFETVPRGADDLAAILYT 164

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTG+ KG + +H ++ +    L + W +T  D  +H LP+ H HGLF A    L AGA
Sbjct: 165 SGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
           ++ F+PKF    +      +            T   GVPT YTRL+Q     +  L   +
Sbjct: 225 SMIFLPKFDPDAVLALMPRA------------TVMMGVPTFYTRLLQ-----EPRL---T 264

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
             AA  +RL + GS+ L     ++++  TGH +LERYGMTE  M  SNP  G R+AGTVG
Sbjct: 265 REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVG 324

Query: 359 NPLPGVQV 366
            PLPGV +
Sbjct: 325 FPLPGVSL 332

Length = 504

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  198 bits (507), Expect = 2e-59
 Identities = 97/357 (27%), Positives = 150/357 (42%), Gaps = 70/357 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +  +Y +L   + R ++ L    +K                  G R+ ++ 
Sbjct: 14  DRPALTFFGRKLTYAELDELSDRFAAYLQQLGVK-----------------KGDRVALML 56

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               +F     G   +G + VP+   Y   EL H ++DS   +++    + + L      
Sbjct: 57  PNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDAL-----A 111

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
           SGA   L   +                       +D A++ YT GTTG PKG + TH+++
Sbjct: 112 SGAPLPLPVELS---------------------PDDLAVLQYTGGTTGVPKGAMLTHRNL 150

Query: 196 DAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI-- 251
            A VQ +           D+FL  LPL H+ GL   +L  L  GAT   +P F    +  
Sbjct: 151 VANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK 210

Query: 252 -WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
             +R+R              T F GVPT+Y  L+   E    +           LRL + 
Sbjct: 211 EIKRYR-------------FTIFPGVPTLYNALLNHPEFKKYDF--------SSLRLCIS 249

Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQV 366
           G + LP+ V +++E  TG  L+E YG+TE     + NPL G RK G++G PLPG +V
Sbjct: 250 GGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEV 306

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  200 bits (510), Expect = 2e-59
 Identities = 99/366 (27%), Positives = 159/366 (43%), Gaps = 49/366 (13%)

Query: 16  DSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           D  A+    +    +Y +L   A R+++ L +  +K                  G R+ I
Sbjct: 26  DRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKP-----------------GDRVAI 68

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           +   S EF+   L    +G +AVPL       EL ++++D+   +++++ ++  +L+ VA
Sbjct: 69  LLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA 128

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD------GQRGEDPALIVYTSGTTGKPKG 187
                   ++             +   AE             +D A ++YTSGTTG PKG
Sbjct: 129 EALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKG 188

Query: 188 VVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP- 244
           VV TH+++ A    +  A     T  D  L  LPL H+ GL   LLAPL  G T+  +  
Sbjct: 189 VVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP 248

Query: 245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
             F    +     E Y V         T  +GVPT    L+          +      + 
Sbjct: 249 EPFDPEEVLW-LIEKYKV---------TVLSGVPTFLRELLD-------NPEKDDDDLSS 291

Query: 304 QLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTE--FVMAISNPLRGARKAGTVGNP 360
            LRL++ G + LP  +++++E   G   +LE YG+TE   V+ I+ P     K G+VG P
Sbjct: 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRP 351

Query: 361 LPGVQV 366
           LPGV+V
Sbjct: 352 LPGVEV 357

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  189 bits (482), Expect = 2e-56
 Identities = 96/348 (27%), Positives = 148/348 (42%), Gaps = 44/348 (12%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y +L   A R+++ L +  +                   G R+ I+   S E+V  +L 
Sbjct: 1   TYRELDERANRLAAALRALGVGP-----------------GDRVAILLPNSPEWVVAILA 43

Query: 88  TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
              +G   VPL  S P   L +++ DS+  ++++ ++    L  V  K     +LI    
Sbjct: 44  VLKAGAAYVPLDPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD 103

Query: 148 NVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
           +      + D      S          +D A I+YTSGTTGKPKGV+ TH+++ A    L
Sbjct: 104 DGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGL 163

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR-GIWQRWRESYPV 261
            E +  T  D+ L  LPLH   G    +  PL AG T+  +PKF++         E Y V
Sbjct: 164 AERFGLTPGDRVLLLLPLHF-DGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222

Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321
                    T   GVPT+   L+        +           LRL++ G   LP  +++
Sbjct: 223 ---------TVLYGVPTLLRLLL--------KAPEEKKYDLSSLRLVLSGGEPLPPELLR 265

Query: 322 QWETITGH-RLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQV 366
           +     G   L+  YG TE   V   + P     K G++G PLPGV+V
Sbjct: 266 RLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEV 313

Length = 412

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  185 bits (473), Expect = 1e-54
 Identities = 113/358 (31%), Positives = 164/358 (45%), Gaps = 65/358 (18%)

Query: 11  GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA- 69
            + A  + A+R   +  S   LA +A                       +AV     GA 
Sbjct: 10  AAAADIADAVRIGGRVLSRSDLAGAA-----------------------TAVAERVAGAR 46

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREV 128
           R+ ++A P+   V  V+G   +G   VP+      +E  H++ DS     L    D    
Sbjct: 47  RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDPAG 106

Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
           L +V  +  A+     P P+  +                    PALIVYTSGTTG PKGV
Sbjct: 107 LPHVPVRLHARSWHRYPEPDPDA--------------------PALIVYTSGTTGPPKGV 146

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           V + ++I A +  L EAW++T+ D  +H LPL HVHGL   +L PL  G       + + 
Sbjct: 147 VLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTP 206

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
                   E+Y    +  G   T + GVPT+++R+     A D E   A   A    RL+
Sbjct: 207 --------EAYAQALSEGG---TLYFGVPTVWSRI-----AADPEAARALRGA----RLL 246

Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           + GS+ALP+PV  +   +TGHR +ERYGMTE ++ +S    G R+ G VG PL GV+ 
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVET 304

Length = 471

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  168 bits (428), Expect = 3e-49
 Identities = 77/197 (39%), Positives = 103/197 (52%), Gaps = 18/197 (9%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           DPA I+YTSGTTGKPKGVV +H+++ A  Q L +A   T  D  L  LPL HV G  + L
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
           L  L AG TV     F     +    E Y          +T   GVPT+Y  L +  E  
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQY---------RVTVLFGVPTLYDALAKAAEDR 111

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLR 349
             +L  +S      LRL++ G   L   +++++E   G  +LE YG+TE  +  S NP  
Sbjct: 112 GYDL--SS------LRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDS 163

Query: 350 GARKAGTVGNPLPGVQV 366
             +K GTVG P+PGV+V
Sbjct: 164 ELKKPGTVGRPVPGVEV 180

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  151 bits (383), Expect = 1e-42
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 27/202 (13%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI+YTSGTTG+PKGV+ TH+++ A         + +  D +L   PL+H       
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA-AGGLF 59

Query: 230 LLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           LL  L AG TV  MPKF    +    +R R             +T    VPTM+ RL++ 
Sbjct: 60  LLPALAAGGTVVLMPKFDPEAVLDLIERHR-------------VTHTFLVPTMFQRLLRL 106

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAI 344
            +    +L +        LRL++ G++ +P  + +      G   ++ YGMTE      +
Sbjct: 107 PDFARYDLSS--------LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTL 158

Query: 345 SNPLRGARKAGTVGNPLPGVQV 366
            +P    RK G+VG P+PGV+V
Sbjct: 159 LSPEDWLRKLGSVGRPVPGVEV 180

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  146 bits (370), Expect = 9e-40
 Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 90/353 (25%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
           ++ ++ +LA    R+++ L                   L    G R+ I+A+   E+V  
Sbjct: 4   QTITWAELAERVRRLAAGL-----------------IALGVKPGDRVAILAENRPEWVIA 46

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
            L    +G + VP+  +    E+ ++++DS   +V   ED                    
Sbjct: 47  DLAILAAGAVPVPIYPTSSPEEVAYILNDSGARVVF-VED-------------------- 85

Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
                                  + +D A ++YTSGTTG PKGV+ TH+++ AQ   L E
Sbjct: 86  -----------------------KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLE 122

Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264
               +  D+ L  LPL HV         PL +GA V F    S   + +  RE       
Sbjct: 123 VIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLRE------- 173

Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---------QLRLMMCGSSAL 315
                 T F  VP ++ ++   Y  ++ ++ AA     K         +LR  + G + L
Sbjct: 174 ---VRPTVFFAVPRVWEKI---YAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPL 227

Query: 316 PLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQV 366
           P  V++ +  + G  +LE YG+TE   V  ++ P  G  + GTVG PLPGV+V
Sbjct: 228 PPEVLEFFRAL-GIPILEGYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEV 277

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  141 bits (358), Expect = 6e-39
 Identities = 74/200 (37%), Positives = 109/200 (54%), Gaps = 20/200 (10%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI++TSGTTG+PKGV  THK++ A  + + ++ + T +D+ L+ +PL H+HGL  +
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS 61

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           LLA L AG +V   PKFS    W    +             T ++ VPT++  L++  + 
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFWDDIAKYRV----------TWYSAVPTIHQILLKTAK- 110

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI-SNPL 348
                         +LR +   S+ LP  V+ + E   G  +LE YGMTE    I SNPL
Sbjct: 111 ------PNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPL 164

Query: 349 RGA-RKAGTVGNPLPGVQVS 367
               RK G+VG P  GV+V+
Sbjct: 165 PPLVRKPGSVGRPA-GVEVA 183

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  136 bits (346), Expect = 4e-37
 Identities = 67/203 (33%), Positives = 93/203 (45%), Gaps = 26/203 (12%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI YTSGTTG+PKG + TH+++      +      T  D+ L  +PL HV GL   
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           +LA L AGAT+  M KF      +              E ITA  GVPTM+  L+     
Sbjct: 62  VLASLTAGATLVLMEKFDPGAALRLIER----------ERITALHGVPTMFIALL----- 106

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE-----FVMA 343
              E           LR  + G + +P  ++++         +   YGMTE        +
Sbjct: 107 ---EHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTS 163

Query: 344 ISNPLRGARKAGTVGNPLPGVQV 366
             +P     + GTVG PLPGV+V
Sbjct: 164 GDDPY--EDRPGTVGRPLPGVEV 184

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  140 bits (354), Expect = 8e-37
 Identities = 86/394 (21%), Positives = 143/394 (36%), Gaps = 78/394 (19%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            +Y +L      ++S L S  +                   G R+ I A    E+    L
Sbjct: 46  ITYRELYERVRALASGLLSLGIPA-----------------GDRVAIFAANRPEWAIADL 88

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREVLQNVASKSGAKFSLIPP 145
                G ++VP+  +    +L +++++S+  ++    ++  +++  V         LI  
Sbjct: 89  AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVI 148

Query: 146 V-----------------PNVSSETTVFDQSQAEKMDGQR-GEDPALIVYTSGTTGKPKG 187
           +                 P+      + D +  E        +D A I+YTSGTTG PKG
Sbjct: 149 IDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKG 208

Query: 188 VVHTHKSIDAQVQMLTEAWEY----TSADQFLHCLPLHHVHGLFNALLAPLYAGATV--- 240
           V+ TH+++ AQV       E        D+ L  LPL H+          LY G TV   
Sbjct: 209 VMLTHRNLLAQV---AGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK 265

Query: 241 -----------EFMPKF--SVRGIWQRWRE-------SYPVNGNRAGEAITAFTGVPTMY 280
                      E  P     V  +W++  +         P    +      A        
Sbjct: 266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR--WALKVAYKKI 323

Query: 281 TRLIQGYEAMDTELQA-------ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
           +R + G   +   L A          +   ++R  + G + L  P +  +    G  +LE
Sbjct: 324 SRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLS-PELLHFFRSLGIPILE 382

Query: 334 RYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQV 366
            YG+TE    +S NP       GTVG PLPG++V
Sbjct: 383 GYGLTETSAVVSVNPPDR-FVLGTVGKPLPGIEV 415

Length = 613

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  138 bits (349), Expect = 2e-36
 Identities = 93/377 (24%), Positives = 151/377 (40%), Gaps = 52/377 (13%)

Query: 3   VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAV 62
           + +AA + G    D  A     +  +Y +L +   R ++ L                 A 
Sbjct: 11  LARAARRFG----DKEAYVFGDQRLTYAELNARVRRAAAAL-----------------AA 49

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L  G G R+ I A  S  +V   LG   +G + VPL   Y   E  +++   D   +   
Sbjct: 50  LGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVL 109

Query: 123 ED----YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ-----SQAEKMDGQRGEDPA 173
                        + +               + +   F         AE+      +D A
Sbjct: 110 GLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVA 169

Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233
            I++TSGTTG+PKG + TH+ + +      E    T  D++L   P  HV G    + AP
Sbjct: 170 DILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAP 229

Query: 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           L  GAT+  +P F    +++              E IT   G PTMY  L+Q        
Sbjct: 230 LMRGATILPLPVFDPDEVFRLIET----------ERITVLPGPPTMYNSLLQ-------- 271

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFV-MAISNPLRGA 351
               SA     LRL + G++++P+ +++++E+  G   +L  YG++E   +   N L   
Sbjct: 272 HPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDD 331

Query: 352 RK--AGTVGNPLPGVQV 366
           RK  AGT+G  + GV+ 
Sbjct: 332 RKTVAGTIGTAIAGVEN 348

Length = 513

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  138 bits (349), Expect = 2e-36
 Identities = 79/373 (21%), Positives = 149/373 (39%), Gaps = 65/373 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+  D +  +Y +L     R+++ L +  +K                  G R+ +  
Sbjct: 21  DKEAVYFDGRRTTYAELDERVNRLANALRALGVKK-----------------GDRVAVFD 63

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E++         G +  P+ +     E+ ++++D++  +VL   ++  +L  +  +
Sbjct: 64  WNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQ 123

Query: 136 SGAKFSLIPPVPNV-------SSETTVFDQSQAEKMDGQRGEDP---------ALIVYTS 179
                  +P V  V       ++          E +                 A ++YTS
Sbjct: 124 -------LPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTS 176

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTG PKGVV +H+++      +    + +  D +L  +P+ HVH         L AGA 
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW-GLPYLALMAGAK 235

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
                +F    +                E +T F  VPT++  L++   A   +  +   
Sbjct: 236 QVIPRRFDPENLLDLIET----------ERVTFFFAVPTIWQMLLKAPRAYFVDFSS--- 282

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISNP----LRGARK 353
                LRL++ G +ALP  ++++++   G  L++ YGMTE   V+++  P         K
Sbjct: 283 -----LRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTK 337

Query: 354 AGTVGNPLPGVQV 366
             + G PLPGV+ 
Sbjct: 338 RRSAGRPLPGVEA 350

Length = 521

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  130 bits (328), Expect = 4e-34
 Identities = 74/310 (23%), Positives = 119/310 (38%), Gaps = 41/310 (13%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++ + S E V  +L    +G   VPL  +YP   L  ++ D+   ++L+      
Sbjct: 25  GDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALAS 84

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKM--DGQRGEDPALIVYTSGTTGKP 185
            L  +          +P +     E    D + A          +D A ++YTSG+TG+P
Sbjct: 85  RLAGLV---------LPVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP 135

Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
           KGVV TH+S+   +  L   +     D+ L    L     +   +   L AGAT+   P+
Sbjct: 136 KGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVE-EIFGALLAGATLVVPPE 194

Query: 246 ---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
                   +       +PV         T     P++   L            AA   A 
Sbjct: 195 DEERDDAALLAALIAEHPV---------TVLNLTPSLLALLA-----------AALPPAL 234

Query: 303 KQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV- 357
             LRL++ G  AL   ++ +W     G RL+  YG TE   +  A       A +   V 
Sbjct: 235 ASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVP 294

Query: 358 -GNPLPGVQV 366
            G PL   ++
Sbjct: 295 IGRPLANTRL 304

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  127 bits (321), Expect = 7e-33
 Identities = 82/359 (22%), Positives = 134/359 (37%), Gaps = 92/359 (25%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+    +S +Y +L   A R++  L                      G G  + I  
Sbjct: 2   DAVAVVFGDQSLTYRELNERANRLAHYL-----------------RARGVGPGDLVAICL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S E V  +L    +G   VPL  +YP   L +++ DS   ++L+  D           
Sbjct: 45  ERSPEMVVAILAVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD----------- 93

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                              D A ++YTSG+TG+PKGV+  H+ +
Sbjct: 94  -----------------------------------DLAYVIYTSGSTGRPKGVMVEHRGL 118

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIW 252
              +  L E +  T+ D+ L          ++  +  PL +GAT+   P         + 
Sbjct: 119 VNLLAWLQERYGLTAGDRVLQFASFSFDASVW-EIFPPLLSGATLVLAPPEVLRDPEALA 177

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           +  RE            IT    VP++   L          L A   +A   LRL++ G 
Sbjct: 178 ELLRE----------HRITVLHLVPSLLRAL----------LDALEPAALPSLRLVIVGG 217

Query: 313 SALPLPVMQQW-ETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTV--GNPLPGVQV 366
            ALP  ++++W E   G RL+  YG TE  + ++           G+V  G P+   +V
Sbjct: 218 EALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRV 276

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  125 bits (316), Expect = 5e-32
 Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 59/369 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+  D  S +Y +L     R       N L+    + +N            R+ ++ 
Sbjct: 20  DKIALYYDDGSLTYGELQEEVNR-----WGNALRELGIEREN------------RVLLIL 62

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             + EF     G    G + VP+       +  + ++DS   +++ +E+  EVL+    K
Sbjct: 63  LDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQK 122

Query: 136 --SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVVHT 191
                   ++      +        + AE+++      +D A  +Y+SG+TG+PKGVVH 
Sbjct: 123 DPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHL 182

Query: 192 HKSID-------AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           H  +          V  +TE       D       L   +GL N L  PL  GAT   MP
Sbjct: 183 HHDMLVTAEAYAKNVLGITE------DDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMP 236

Query: 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
           +  +   ++       P          T F GVPT+Y  ++   E  + +L         
Sbjct: 237 ERPTPDAVFATIERYKP----------TVFFGVPTLYAAMLAAPEKPERDL--------- 277

Query: 304 QLRLMMCGSSALPLP--VMQQWETITGHRLLERYGMTEFV-MAISNPLRGARKAGTVGNP 360
              L +C S+   LP  +  +W+ + G  +L+  G TE + + +SN   GA K GT G P
Sbjct: 278 -SSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSN-RPGAVKYGTSGKP 335

Query: 361 LPGVQVSMI 369
           +PG +V ++
Sbjct: 336 VPGYEVKLV 344

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  125 bits (317), Expect = 6e-32
 Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 27/221 (12%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y +L   A  I++ L +                   G  G R+ ++A P  +FVA   G
Sbjct: 25  TYAELDRRARAIAARLQA------------------LGAPGDRVLLLAPPGLDFVAAFFG 66

Query: 88  TWFSGCIAVPLALSYPESE----LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI 143
             ++G IAVP             L  ++ D+    VL+T      L+   +   A     
Sbjct: 67  CLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAA----- 121

Query: 144 PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT 203
             +  ++++      +   +      +D A + YTSG+TG PKGV+ TH ++ A ++ + 
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIA 181

Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
            A+     D  +  LPL+H  GL   LL PLYAG  V  M 
Sbjct: 182 RAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMS 222

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  124 bits (314), Expect = 1e-31
 Identities = 91/375 (24%), Positives = 144/375 (38%), Gaps = 74/375 (19%)

Query: 18  VAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
             I AD     ++  L   ALR++  L    LK                  G  + +++ 
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQ-----------------GDVVALISP 43

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
            S EF    LG   +G I      SY   EL H +  S   ++    D  + ++  A + 
Sbjct: 44  NSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKEL 103

Query: 137 GAKFSLI---------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           G    +I           + ++       +            +D A ++Y+SGTTG PKG
Sbjct: 104 GPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKG 163

Query: 188 VVHTHKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           V+ +HK+I A   QVQ   +    +S D  L  LP +H +GL   L + L  GATV  MP
Sbjct: 164 VMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLC-GATVIIMP 222

Query: 245 KFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
           KF      + I ++++             +T+   VP +   L     A    +     S
Sbjct: 223 KFDSETFLKLI-EKYK-------------VTSLFLVPPIAVAL-----AKSPLVDKYDLS 263

Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLER---------YGMTEFVMAISNPLRGA 351
           +   LR++  G++ L   +           L +R         YGMTE   A +    G 
Sbjct: 264 S---LRVIFSGAAPLSKEL--------QEELRKRFPNTTIKQGYGMTETGPATTLTPPGD 312

Query: 352 RKAGTVGNPLPGVQV 366
            K G+VG  +P V+ 
Sbjct: 313 EKPGSVGRLVPNVEA 327

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  123 bits (312), Expect = 4e-31
 Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 25/202 (12%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ---FLHCLPLHHVHGL 226
           +D ALI+YTSGTTGKPKG   TH+++ A      +AW     D     L  LP+ H +GL
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQ-GKAWVPGLGDGPERVLAALPMFHAYGL 277

Query: 227 -FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
                LA    G  +  +P   +  I    ++  P          T   GVP +Y ++ +
Sbjct: 278 TLCLTLAV-SIGGELVLLPAPDIDLILDAMKKHPP----------TWLPGVPPLYEKIAE 326

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV-MAI 344
             E    +L          +R    G+ ALP+  ++ WE +TG  L+E YG+TE   + +
Sbjct: 327 AAEERGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV 378

Query: 345 SNPLRGARKAGTVGNPLPGVQV 366
            NP+   R+ G VG P P  +V
Sbjct: 379 GNPMSDDRRPGYVGVPFPDTEV 400

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  119 bits (301), Expect = 3e-30
 Identities = 72/299 (24%), Positives = 110/299 (36%), Gaps = 70/299 (23%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++     EF+         G +AVP+  +    EL H++  S   +++       
Sbjct: 28  GDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEELAHILDHSGARLIVV------ 81

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                                      D A I+YTSGTTG PKG
Sbjct: 82  -------------------------------------------DTAAILYTSGTTGPPKG 98

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           V+ TH  +    ++          D  L  LPL H++    ++ A L  GAT+  +P+FS
Sbjct: 99  VLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFS 158

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
               W + R+        A    T F  +  M   L++   + D             LR 
Sbjct: 159 ASRFWDQVRKH------GA----TVFNLLGAMAAILMKQPPSPD--------DRDHPLRF 200

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           +      LP  +   +E   G +L+E YGMTE  + I  P       G+ G P PGV+V
Sbjct: 201 VFGA--PLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAP-GDPAPPGSCGRPRPGVEV 256

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  119 bits (301), Expect = 5e-30
 Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 57/370 (15%)

Query: 9   KKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG 68
           K+  +  D +AI  +++  +Y QL     ++++ L   +L                   G
Sbjct: 10  KRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYL-IYELNVKK---------------G 53

Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI I+++ S E++  +       CIAVPL +   E+EL+  + DS  +++   + +   
Sbjct: 54  ERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTF--- 110

Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
            QN+A        +   + +++S   + D+     ++        +I YTSGTTGKPKG 
Sbjct: 111 -QNMALSMQKVSYVQRVI-SITSLKEIEDRKIDNFVEKN-ESASFIICYTSGTTGKPKGA 167

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV----EFMP 244
           V T +++       T A + T  D+ +  LPL H+ G+       L+AG  +    +F P
Sbjct: 168 VLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEP 227

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
             ++  I +                +T   GVPT++  LI   +   T LQ+        
Sbjct: 228 TKALSMIEK--------------HKVTVVMGVPTIHQALINCSKFETTNLQS-------- 265

Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-----FVMAISNPLRGARKAGTVGN 359
           +R    G +  P  +M+++    G    + +GMTE     F+++  +     RK G++G 
Sbjct: 266 VRWFYNGGAPCPEELMREFID-RGFLFGQGFGMTETSPTVFMLSEED---ARRKVGSIGK 321

Query: 360 PLPGVQVSMI 369
           P+      +I
Sbjct: 322 PVLFCDYELI 331

Length = 496

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  118 bits (297), Expect = 1e-29
 Identities = 80/310 (25%), Positives = 125/310 (40%), Gaps = 78/310 (25%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ +  + S +FV        +G + VP+     E+EL H+++DS   +++       
Sbjct: 26  GDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILNDSGARVLIV------ 79

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                                 G   +D A+I YTSGTTG PKG
Sbjct: 80  --------------------------------------GSELDDVAVIPYTSGTTGLPKG 101

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            +HTH+++ A           T     L  LPL HV G+  ++ AP+Y GAT+  +    
Sbjct: 102 CMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLT--- 158

Query: 248 VRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
                 RW RE+       A  AI     T +T + TM   L+      D +L +     
Sbjct: 159 ------RWDREA-------AARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLSS----- 200

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA--ISNPLRGARKAGTVGN 359
              L+++  G +ALP  V ++ + +TG    E YG+TE       + P R   K   +G 
Sbjct: 201 ---LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRP--KPQCLGI 255

Query: 360 PLPGVQVSMI 369
           P+ G    +I
Sbjct: 256 PVFGTDARVI 265

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  118 bits (298), Expect = 2e-29
 Identities = 90/362 (24%), Positives = 144/362 (39%), Gaps = 45/362 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
              A   D  S SY +L +   R         L+    K +             R+ ++ 
Sbjct: 20  GKTAFIDDISSLSYGELEAQVRR-----LGAALRRLGVKREE------------RVLLLM 62

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               +F    LG   +G + V L       +  +++ DS   +V  + +   V++    K
Sbjct: 63  LDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGK 122

Query: 136 SGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           S      +    P    V     +  +S+  K    + +DPA  +Y+SG+TG PKGVVHT
Sbjct: 123 SPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHT 182

Query: 192 HKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVR 249
           H +     ++           D       L   +GL NAL  P+  GAT   M  + +  
Sbjct: 183 HSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD 242

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
            ++ R R   P          T F GVPT        Y AM   L   +  A  Q+RL +
Sbjct: 243 AVFDRLRRHQP----------TIFYGVPT-------LYAAM---LADPNLPAEDQVRLRL 282

Query: 310 CGSSALPLP--VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVS 367
           C S+   LP  V Q+W+   G  +++  G TE +    + L G  + GT G P+PG ++ 
Sbjct: 283 CTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLR 342

Query: 368 MI 369
           ++
Sbjct: 343 LV 344

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  115 bits (289), Expect = 4e-29
 Identities = 68/208 (32%), Positives = 94/208 (45%), Gaps = 32/208 (15%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +D A   +T GTTG PK   H+H++  A   M          D  L+ LPL HV G   
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 229 ALLAPLYAGATV------EFMPKFSVRGIWQ---RWRESYPVNGNRAGEAITAFTGVPTM 279
             LAPL  GATV       F     V   W+   R+R             +T  + VPT+
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYR-------------VTLLSAVPTV 107

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
              L+Q        L  A  S    LR  + G++ LP+ V +++E +TG  ++E YGMTE
Sbjct: 108 LAALLQ------VPLGDADIS---SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTE 158

Query: 340 FVMAIS-NPLRGARKAGTVGNPLPGVQV 366
                + NP  G R+ G+VG  LP  +V
Sbjct: 159 GTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  116 bits (292), Expect = 1e-28
 Identities = 73/354 (20%), Positives = 126/354 (35%), Gaps = 48/354 (13%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             +  +Y  L     R+++ L                   L G  G R+ I    S E V
Sbjct: 37  LFRELTYGDLRREVARLANAL-----------------KDLGGVKGDRVAIYMPNSPEAV 79

Query: 83  AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
             +L T   G I   ++       +   + D    ++++ +      + +A    A  ++
Sbjct: 80  IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDAD-AV 138

Query: 143 IPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA 197
           +  V  V      +D      S+  + +    +DP  ++YTSGTTGKPKG+VH+H     
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 198 QVQMLTEAWEYTSADQFLHCL-PLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQR 254
           + ++  +                   ++GL+ ++ +PL +GAT        F        
Sbjct: 199 EHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWE 258

Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314
             E Y          +T F   PT   RL          ++           L + GS+ 
Sbjct: 259 ALEKY---------KVTIFGTSPTFLRRL----------MKLGLGEPYDLSSLRVLGSAG 299

Query: 315 LPLP--VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
            PL     + + +  G  +L+ YG TE  M         +   + G PLPG  V
Sbjct: 300 EPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPPVKNGSS-GLPLPGYAV 352

Length = 528

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  115 bits (290), Expect = 4e-28
 Identities = 67/209 (32%), Positives = 92/209 (44%), Gaps = 32/209 (15%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
             +D A   +T GTTG PK   HTH +  A   +          D     LPL HV+ L 
Sbjct: 211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALL 270

Query: 228 NALLAPLYAGATVEFMPKFSVRG------IW---QRWRESYPVNGNRAGEAITAFTGVPT 278
              LAPL  GA V        RG       W   +R+R             I   +GVPT
Sbjct: 271 VTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYR-------------INFLSGVPT 317

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
           +Y  L      +   +     S+   LR  +CG++ LP+ V +++E  TG R++E YG+T
Sbjct: 318 VYAAL------LQVPVDGHDISS---LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT 368

Query: 339 EFVMAIS-NPLRGARKAGTVGNPLPGVQV 366
           E     S NP  G R+ G+VG  LP  +V
Sbjct: 369 EATCVSSVNPPDGERRIGSVGLRLPYQRV 397

Length = 632

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  111 bits (280), Expect = 4e-27
 Identities = 98/372 (26%), Positives = 153/372 (41%), Gaps = 69/372 (18%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
             Y++ Q+A  A RI++ L S  L+                  G RI I++K   E++  
Sbjct: 5   HEYTWAQVADQARRIAAALQSLGLEP-----------------GDRIAILSKNCAEWIIA 47

Query: 85  VLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVL--STEDYREVLQNVASKSGAK 139
            L  W +G ++VPL   YP      + +V+  SD   +     +D+  +   V       
Sbjct: 48  DLAIWMAGHVSVPL---YPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPE----- 99

Query: 140 FSLIPPVPNVSSETTVFDQSQA-----EKMDG---QRGEDPALIVYTSGTTGKPKGVVHT 191
             L   +    S      +        E + G      ED A IVYTSGTTG+PKGV+ +
Sbjct: 100 -GLPTIILFPYSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLS 158

Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
             +     Q   E    T  D+ L  LPL H+          LY+GA V F     V  +
Sbjct: 159 FGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFF-----VESL 213

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY------EAMDTELQAASASAA--- 302
                +++  +  RA    T F  VP ++T+  QG       E ++  L+    S+    
Sbjct: 214 -----DTFAADLQRA--RPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKK 266

Query: 303 --------KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA 354
                    Q RL   G++ +P  ++  +  + G  + E YGMTE     +    G R+ 
Sbjct: 267 KILKGLGLDQARLAGSGAAPMPPALIAWYRKL-GLPICEGYGMTENFAYSTLNYPGDRRI 325

Query: 355 GTVGNPLPGVQV 366
           GTVG P+PGV++
Sbjct: 326 GTVGKPIPGVEL 337

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  110 bits (277), Expect = 5e-27
 Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 46/302 (15%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G+R+ +V + S E V  +      G     L     E+E  + + D D+ ++L+      
Sbjct: 24  GSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD----- 78

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                     +         +         + +         +  A +++TSGTTGKPK 
Sbjct: 79  ----------SLLEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           V HT ++  A      E   +T  D +L  LPL+H+ GL + L   L  GAT+  + KF+
Sbjct: 129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN 187

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
                        +    A E +T  + VPT   RL+                  + LR 
Sbjct: 188 ------------QLLEMIANERVTHISLVPTQLNRLLD------------EGGHNENLRK 223

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEF---VMAISNPLRGARKAGTVGNPLPGV 364
           ++ G SA+P P++++ +   G  +   YGMTE    V   +  +  AR    VG PL G 
Sbjct: 224 ILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHAR--PDVGRPLAGR 280

Query: 365 QV 366
           ++
Sbjct: 281 EI 282

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  110 bits (277), Expect = 5e-27
 Identities = 78/308 (25%), Positives = 111/308 (36%), Gaps = 89/308 (28%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++AK S EF+   L     G + +PL    P+ EL                    
Sbjct: 26  GDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQEEL-------------------- 65

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                           Q +       + PA I++TSG+TGKPK 
Sbjct: 66  -------------------------QQQLADLQPD------LDRPATIIFTSGSTGKPKA 94

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           VVHT  +  A  +   E    T  D +L  LPL HV GL   ++  L AG  +    KF 
Sbjct: 95  VVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFD 153

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              I     E++ V         T  + VPT   RL          L++  A     LR 
Sbjct: 154 AEAI-AEALENHGV---------THISLVPTQLQRL----------LESLGARWLSSLRA 193

Query: 308 MMCGSSALPLPVMQQ-----WETITGHRLLERYGMTEFVMA----ISNPLRGARKAGTVG 358
           ++ G + +P  +++Q                 YGMTE   A       P     K G+VG
Sbjct: 194 VLLGGAPIPPSLLEQARQRGIPLYPT------YGMTE--TASQVATLKPDDFLAKLGSVG 245

Query: 359 NPLPGVQV 366
            PLPG ++
Sbjct: 246 KPLPGREL 253

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  109 bits (275), Expect = 1e-26
 Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 20/198 (10%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           D AL++YTSGTTG+PKGV+HTH ++ A+V+   E    T  D  L   PL H+ G    L
Sbjct: 94  DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGL 153

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
             PL  GATV    ++      +  RE            +T   G       L+      
Sbjct: 154 ELPLLLGATVVLQDRWDPARALELIRE----------HGVTFTMGATPFLADLL------ 197

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR- 349
                 A+      LR+ +CG + +P  + ++     G +++  YGMTE  +        
Sbjct: 198 --AAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDD 255

Query: 350 -GARKAGTVGNPLPGVQV 366
              ++A T G P+PGV+V
Sbjct: 256 PDDKRAATDGRPVPGVEV 273

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  109 bits (274), Expect = 1e-26
 Identities = 86/357 (24%), Positives = 135/357 (37%), Gaps = 93/357 (26%)

Query: 17  SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
             A    ++S +Y +L   A R +++L                   L    G R+ ++  
Sbjct: 1   KTAFYCGEQSLTYRELHDLANRFANVL-----------------RALGVSPGDRVLLLLP 43

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
            S E VA  L    +G +AV L       +L H++ DS  +++            V    
Sbjct: 44  DSPELVAAFLACLKAGAVAVALNPLLTPQDLEHILDDSGAALL------------VTE-- 89

Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID 196
                                            +D A  +YTSGTTGKPKGV+H H+   
Sbjct: 90  --------------------------------ADDIAYWLYTSGTTGKPKGVMHRHRDPL 117

Query: 197 AQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGI 251
              +    E       D+      L   +GL N+LL PL++GA+   +P +    +V  +
Sbjct: 118 TFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDL 177

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
             R R              T   GVP +Y  L++          A SA   + +RL +  
Sbjct: 178 LARHRP-------------TVLFGVPALYRALLES--------GAGSAPLFRSVRLCVSA 216

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQV 366
             ALP  + ++W   TG  +L+  G TE   +   + P  GA + GT G P+PG + 
Sbjct: 217 GEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRP--GAARPGTTGRPVPGYEA 271

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  109 bits (274), Expect = 4e-26
 Identities = 82/355 (23%), Positives = 132/355 (37%), Gaps = 48/355 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+    +  +Y +L + A R++ LL S                 L  G G  + I+A
Sbjct: 242 DAVALVRGGQQLTYAELDARANRLARLLIS-----------------LGVGPGETVAILA 284

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E V  +L    +G   VPL   YP   L +++ DS  +++L+    R         
Sbjct: 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRV-------- 336

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                  +     +S         QA       G+  A I+YTSG+TG+PKGV   H+++
Sbjct: 337 DDVGLPGLALDDALSEIPDTDPIPQALL-----GDALAYIIYTSGSTGQPKGVRIEHRAL 391

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
              +      +   + D+ L    L     +F  +   L  GA +   P           
Sbjct: 392 ANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALL 450

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                       + IT    VP +   L      +   L     S  ++LR ++ G  AL
Sbjct: 451 ELL-------EAQGITVLLLVPLLLRLL------LLAALAPDLISPCERLRQLLSGGEAL 497

Query: 316 PLPVMQQWETI--TGHRLLERYGMTEFVMAISNPLRGARKAGTV--GNPLPGVQV 366
           PL ++Q+   +     RLL  YG TE  +   +    A     V  G P+   Q+
Sbjct: 498 PLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQL 552

Length = 642

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  107 bits (269), Expect = 1e-25
 Identities = 96/388 (24%), Positives = 147/388 (37%), Gaps = 85/388 (21%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI    ++ SY +L   A R++  L                        G R+ +  
Sbjct: 25  DKTAIVFYGRAISYRELLEEAERLAGYL----------------QQECGVRKGDRVLLYM 68

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S +FV        +  + VP+     E EL H + DS   + +   +    +      
Sbjct: 69  QNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGN 128

Query: 136 SGAKFSLI----------------------PPVPNVSSETTVF------DQSQAEKMDGQ 167
              +  ++                      PP+  ++    V                  
Sbjct: 129 LRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAG 188

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGL 226
             +D A++ YTSGTTG PKG +HTH+++ A   + +  W   T     L  LPL HV G+
Sbjct: 189 P-DDLAVLPYTSGTTGVPKGCMHTHRTVMANA-VGSVLWSNSTPESVVLAVLPLFHVTGM 246

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMY 280
            +++ AP+YAGATV  MP         RW RE+       A   I     T +T +PTM 
Sbjct: 247 VHSMNAPIYAGATVVLMP---------RWDREA-------AARLIERYRVTHWTNIPTMV 290

Query: 281 TRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
              +   G    D             LR +  G +A+P  V ++ + +TG   +E YG+T
Sbjct: 291 VDFLASPGLAERDL----------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLT 340

Query: 339 EFVMA--ISNPLRGARKAGTVGNPLPGV 364
           E  MA   SNP     K   +G P  GV
Sbjct: 341 E-TMAQTHSNP-PDRPKLQCLGIPTFGV 366

Length = 546

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  105 bits (263), Expect = 7e-25
 Identities = 68/208 (32%), Positives = 101/208 (48%), Gaps = 33/208 (15%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
           G + +DPA+I++TSG+ G PKGVV +H+++ A +  +    +  + D  L  LPL H  G
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFG 200

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTMY 280
           L   LL PL  G  V + P               P++  +  E I     T   G PT  
Sbjct: 201 LTVTLLLPLLTGLRVVYYPN--------------PLDAKKIAELIRDYKATILCGTPTFL 246

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
               +GY         +S      LRL++ G+  LP    + +E   G R+LE YG TE 
Sbjct: 247 ----RGYARNAHPEDFSS------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATEC 296

Query: 341 --VMAISNPLRGARKAGTVGNPLPGVQV 366
             V++++ P+    K GTVG PLPG++V
Sbjct: 297 SPVISVNTPM--GNKPGTVGRPLPGIEV 322

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  101 bits (253), Expect = 4e-24
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +D A I+YTSG+TG+PKGV+ +H+++ A  + + +  E T  D+ L  LP    +GL +
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGL-S 59

Query: 229 ALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
            LL     G T+    +F+  R + +   +          E IT F GVPT + +L++  
Sbjct: 60  QLLTAFRVGGTLVLESRFAFPRDVLKHLAK----------ERITGFAGVPTTWAQLLR-- 107

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE-FVMAIS 345
             +D   +    S    LR +     ALP   + Q        +L   YG+TE F     
Sbjct: 108 --LDPLAREDFPS----LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYL 161

Query: 346 NPLRGARKAGTVGNPLPGVQVSMI 369
            P    R+  ++G  +P V++ ++
Sbjct: 162 PPEELDRRPDSIGKAIPNVELWVV 185

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (251), Expect = 3e-23
 Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L    G R+ I+     + V G  GT  +G I V     Y E EL + +HDS   ++L  
Sbjct: 69  LGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCL 128

Query: 123 EDYREVLQNVASKSGAKFSLIP------PVPN-----------------VSSETTVFDQS 159
           +     + NV S +  +  ++       P P                  VS   T+   +
Sbjct: 129 DLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWN 188

Query: 160 QAEK-------MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
             EK       +      D AL+ YT GTTG PKGV+ THK++ +   M  + W Y   +
Sbjct: 189 SVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ-WLYNCKE 247

Query: 213 Q---FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
                L  LP  HV+G+   +   +  G  +  +PKF ++ +++  ++            
Sbjct: 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKK----------HK 297

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329
           +T F G PT+Y  L+      + ++ +        +R  + GS+ LP+ V +++ET+TG 
Sbjct: 298 VTLFPGAPTIYIALLNSPLLKEYDISS--------IRACISGSAPLPVEVQEKFETVTGG 349

Query: 330 RLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVSMILL 371
           +L+E YG+TE   +  SN L   R  G++G P P  +  ++ L
Sbjct: 350 KLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL 392

Length = 563

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 99.2 bits (248), Expect = 7e-23
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 39/320 (12%)

Query: 63  LAGGCGAR-------IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD 115
           LA G  AR       + +++  S EF    L    +G +       Y  +E+   + DS 
Sbjct: 45  LAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSG 104

Query: 116 ISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK-MDGQRGEDPAL 174
             + ++T +  E L ++A +                +    D+ +    +  Q  +D A 
Sbjct: 105 AKLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQ--DDVAA 162

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCLPLHHVHGLFNALLA 232
           + Y+SGTTG+ KGV+ TH+++ A V  L          +   L  LP+ H++GL   LLA
Sbjct: 163 LPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLA 222

Query: 233 PLYAGATVEFMPKFSVRG---IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            L  GATV  MP+F +       ++++             +T    VP +   L++    
Sbjct: 223 LLRLGATVVVMPRFDLEKFLAAIEKYK-------------VTHLPVVPPIVLALVKHPIV 269

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF--VMAISN 346
              +L          L+ +  G++ L   + + +     G  L + YGMTE   V  +  
Sbjct: 270 DKYDL--------SSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCP 321

Query: 347 PLRGARKAGTVGNPLPGVQV 366
                 K G+VG  +P V+ 
Sbjct: 322 VPEKDPKPGSVGRLVPNVEA 341

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 71/213 (33%), Positives = 101/213 (47%), Gaps = 39/213 (18%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED ALI++TSG+ G PKGVVH+HKS+ A V+ +    ++T  D+F+  LPL H  GL
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              L  PL  GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFA-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EF--VMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E   V++I+ P+  A K GTVG  LPG+   ++
Sbjct: 515 ECAPVVSINVPM--AAKPGTVGRILPGMDARLL 545

Length = 718

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 81/358 (22%), Positives = 136/358 (37%), Gaps = 50/358 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +S++Y +L ++  R+++ L    LK                  G R+  + 
Sbjct: 26  DKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKK-----------------GDRVAALG 68

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S  +    L    +G + VP+       EL +++  S     L         +   + 
Sbjct: 69  HNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALAL 128

Query: 136 SGAKFSL----IPPVPNVSSETTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                 +    +             D     S AE       +D A I+YTSGT   PKG
Sbjct: 129 LPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKG 188

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            + TH+++ A+      A + ++ D  LH LPL+H   L   L   LY GAT   +    
Sbjct: 189 AMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPD 248

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              I +              E IT+F   PT++  L++  +    +L +        LR 
Sbjct: 249 PELILRTI----------EAERITSFFAPPTVWISLLRHPDFDTRDLSS--------LRK 290

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA----ISNPLRGARKAGTVGNP 360
              G+S +P+ V+++  E + G R    YG TE  +A    +  P    R+ G+ G P
Sbjct: 291 GYYGASIMPVEVLKELRERLPGLRFYNCYGQTE--IAPLATVLGPEEHLRRPGSAGRP 346

Length = 523

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 94.6 bits (236), Expect = 2e-21
 Identities = 72/357 (20%), Positives = 118/357 (33%), Gaps = 100/357 (28%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+     S +Y +L   A +++  L S                 L    G  + +  
Sbjct: 7   DAVAVDFWDGSLTYAELDRRANKLAHHLIS-----------------LGVRPGDIVALCL 49

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S      +L    +G   VP+  S P   L  ++ DS  ++VL++             
Sbjct: 50  ERSPWLYVAILAVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS------------- 96

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                             +DPA ++YTSG+TGKPKGVV TH++I
Sbjct: 97  --------------------------------SPDDPAYVIYTSGSTGKPKGVVITHRNI 124

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVRGI 251
              ++           D+ L    +      F+     +   L AG T+   P+      
Sbjct: 125 CNFLRAEGAILGIRPGDRVLQFASIA-----FDVSILEIFTTLLAGGTLVIPPEELRLED 179

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
              +     +N  R    +T     P++   L                     LR ++ G
Sbjct: 180 LAEF-----LNRLR----VTVAHLTPSLLALL--------------DPEDVPSLRTLILG 216

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQV 366
             A P  ++ +W      RLL  YG TE    ++         K   +G PLP    
Sbjct: 217 GEACPQALVDRW--SKPRRLLNTYGPTE--ATVTATASRLTPGKPVNIGRPLPNYTC 269

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 91.5 bits (227), Expect = 4e-20
 Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 36/286 (12%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL------- 120
           G R+ +    + EFV  +L    +  + VPL  + P +E       +   +VL       
Sbjct: 68  GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPH 127

Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
                T  +  +  NV   SG     +    + ++E T    S  E +      D A+I+
Sbjct: 128 DRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTP-ATSTPEGL----RPDDAMIM 182

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           +T GTTG PK V  TH +I + V+ +   +  +  D  +  +PL+H HGL  ALLA L +
Sbjct: 183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLAS 242

Query: 237 GATVEFMP---KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           G  V  +P   +FS    W   +              T +T VPT++  L+   E   TE
Sbjct: 243 GGAV-LLPARGRFSAHTFWDDIKAV----------GATWYTAVPTIHQILL---ERAATE 288

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
               S      LR +   S+ L     Q  +T     ++  +GMTE
Sbjct: 289 ---PSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTE 331

Length = 534

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 88/365 (24%), Positives = 138/365 (37%), Gaps = 53/365 (14%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D  A+       +Y QLA    R      +                 L  G G  + ++
Sbjct: 26  PDRPALVLGDTRLTYGQLADRISRYIQAFEA-----------------LGLGTGDAVALL 68

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
           +    E +  +     +G     L       +  +V+ D+ IS ++       E    +L
Sbjct: 69  SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL 128

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
             V S      +L  PVP+         +   A  +      D A + YT GTTGKPKGV
Sbjct: 129 ARVPSLK-HVLTL-GPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGV 186

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           + TH+SI    Q+    WE+ +  +FL C PL H  G F   L  L  G TV  + KF  
Sbjct: 187 MGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDP 244

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
             + +   E          + ITA   VPTM   L+   +    +L +        L  +
Sbjct: 245 AEVLRAIEE----------QRITATFLVPTMIYALLDHPDLRTRDLSS--------LETV 286

Query: 309 MCGSSAL-PLPVMQQWETITGHRLLERYGMTEFVMAIS------NPLRGARKAGTVGNPL 361
             G+S + P+ + +  E   G    + YG TE  M I+      +     ++  + G P 
Sbjct: 287 YYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPT 345

Query: 362 PGVQV 366
           PG++V
Sbjct: 346 PGLRV 350

Length = 524

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 41/186 (22%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+    +S +Y +L   A R++  L +  +                   G  + ++ 
Sbjct: 2   DAIALVYGDRSLTYAELNERANRLARRLRARGVGP-----------------GDVVALLL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL------ 129
           + S E V  +L    +G   VPL  +YP   L  ++ DS   ++L+ E    +       
Sbjct: 45  ERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLP 104

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +  +        PP P V                    +D A ++YTSG+TG+PKGV 
Sbjct: 105 LVILEEELDAEDAGPPAPAVD------------------ADDLAYVMYTSGSTGRPKGVA 146

Query: 190 HTHKSI 195
             H+ +
Sbjct: 147 VPHRGV 152

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 88.3 bits (219), Expect = 4e-19
 Identities = 81/322 (25%), Positives = 125/322 (38%), Gaps = 63/322 (19%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++     EF+   LG  + G IAVP+  +    +L H++ +S   +++       
Sbjct: 71  GDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA 130

Query: 128 VLQNV-----------------ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE 170
            L+                   +    A +S  P  P  +                 +  
Sbjct: 131 ALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA----------AVQPG 180

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGL 226
           D A I+YTSGTTG  KGV   H    AQ     +   E  E  + D     LPL H + L
Sbjct: 181 DTAAILYTSGTTGPSKGVCCPH----AQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNAL 236

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
            NA    L AGAT    P+FS  G W   R        R G  +T   G           
Sbjct: 237 -NAFFQALLAGATYVLEPRFSASGFWPAVR--------RHGATVTYLLG----------- 276

Query: 287 YEAMDTELQAASASAA-KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMA 343
             AM + L +  A  + +  R+ +     +P  +   +    G  LL+ YG TE  FV+A
Sbjct: 277 --AMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETNFVIA 334

Query: 344 ISNPLRGARKAGTVGNPLPGVQ 365
           ++    G+++ G++G   PG +
Sbjct: 335 VT---HGSQRPGSMGRLAPGFE 353

Length = 542

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 69/331 (20%), Positives = 115/331 (34%), Gaps = 80/331 (24%)

Query: 47  DLKTTSEKTKNENSAVLAGGC---GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP 103
           +LK  S++  N     L       G R+ ++     E  A +LG    G + +P      
Sbjct: 5   ELKEESDRAAN----FLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK 163
             ++ + +  +    ++++ D                                       
Sbjct: 61  PKDIRYRLERAGARAIVTSAD--------------------------------------- 81

Query: 164 MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV 223
                  DPAL+ +TSGTTG PK V+HTH      +       +    D           
Sbjct: 82  -------DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWA 134

Query: 224 HGLFNALLAPLYAGATVEF--MPKFSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPT 278
            G +++L AP   GA V      +F       + +R+              +T F   PT
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYG-------------VTTFCAPPT 181

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y  L+Q         Q  S+     LR ++     L   V+  W   TG  + + YG T
Sbjct: 182 AYRMLLQ---------QDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQT 232

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E  + ++N      K G++G P PG +V++I
Sbjct: 233 ETGLLVANFPGMEVKPGSMGRPAPGYRVAII 263

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 87.3 bits (217), Expect = 8e-19
 Identities = 66/314 (21%), Positives = 109/314 (34%), Gaps = 68/314 (21%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+ A+     + +Y +LA  A  I++ L                        G  + +V 
Sbjct: 2   DATAVIDGAGTLTYGELARRANAIAAAL-------------RAAGV----APGDLVAVVM 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
              +E +  VLG   +G   VP+    P      ++  +    VL+     +        
Sbjct: 45  PKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQ-------- 96

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG----EDPALIVYTSGTTGKPKGVVHT 191
                    P           D + AE           +D A +++TSG+TG+PKGV+ T
Sbjct: 97  ---------PEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT 147

Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHH---VHGLFNALLAPLYAGATVEFMPKFSV 248
           H++    +  +   +    AD+ L    LH    V+ +F AL     AGA +    +   
Sbjct: 148 HRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFGALS----AGAALVLPDEARR 203

Query: 249 RGI--WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA--SASAAKQ 304
           R    W    + + V         T +  VP +          MD  L  A  +A     
Sbjct: 204 RDPDHWAELVQRHGV---------TVWNSVPAL----------MDMLLTYAEDAARLLPS 244

Query: 305 LRLMMCGSSALPLP 318
           LRL+M     +PL 
Sbjct: 245 LRLVMLSGDWIPLD 258

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 87.1 bits (216), Expect = 8e-19
 Identities = 83/372 (22%), Positives = 146/372 (39%), Gaps = 58/372 (15%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D+ A+    ++ +Y  L+   L ++S L    L                   G R+ I 
Sbjct: 14  PDATALVHHDRTLTYAALSERVLALASGLRGLGLAR-----------------GERVAIY 56

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                E V  + G   +G + VP+       ++ H++ D ++ +++++ +  ++L     
Sbjct: 57  LDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP 116

Query: 135 K-----------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTG 183
                         A  S   P    +S   +     A+        D A I+YTSG+TG
Sbjct: 117 GCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTG 176

Query: 184 KPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV--- 240
           +PKGVV +H+++ A  Q +    E    D+ L  LPL   +G FN L    Y GATV   
Sbjct: 177 RPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGATVVLH 235

Query: 241 -EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
              +P+  ++ + +                IT    VP ++ +L Q              
Sbjct: 236 DYLLPRDVLKALEK--------------HGITGLAAVPPLWAQLAQ---------LDWPE 272

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWET-ITGHRLLERYGMTE-FVMAISNPLRGARKAGTV 357
           SAA  LR +     A+P   + +  + +   RL   YG+TE F      P    R+  ++
Sbjct: 273 SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSI 332

Query: 358 GNPLPGVQVSMI 369
           G  +P  +V ++
Sbjct: 333 GKAIPNAEVLVL 344

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 87.3 bits (216), Expect = 1e-18
 Identities = 81/286 (28%), Positives = 124/286 (43%), Gaps = 45/286 (15%)

Query: 96  VPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETT 154
           +P+AL + E  LL      D  +V   +++         K G   + IP  P  V+    
Sbjct: 131 LPMALKFLEKGLL------DRLIVCEDDNW--------GKVGTPQAPIPADPRIVTYADF 176

Query: 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EY 208
           V   +   +      +D AL+ YT GTTG PKG + TH ++ + V +  + W        
Sbjct: 177 VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATR 235

Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGE 268
              ++ +  LPL H++ L   LL  L  G  +    +F V  +++   E       RA  
Sbjct: 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEE------KRA-- 287

Query: 269 AITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV--MQQWETI 326
             T F GVPTM+  L     A D  L+    S+     L   GS   PLPV     +E  
Sbjct: 288 --TVFPGVPTMWIAL-----ANDPSLEKRDLSS-----LATIGSGGAPLPVEVANFFERK 335

Query: 327 TGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPLPGVQVSMILL 371
           TG +L   +GMTE       +P  G  K G++G  LPG+++ ++ L
Sbjct: 336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSL 381

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 68/284 (23%), Positives = 113/284 (39%), Gaps = 50/284 (17%)

Query: 69   ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
              +GI  + S E V G+L    +G   VPL   YP   L +++ DS I ++L+      +
Sbjct: 1625 VLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQ---SHL 1681

Query: 129  LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTS 179
               +    G               + V DQ     ++G    +PA+         ++YTS
Sbjct: 1682 QARLPLPDGL-------------RSLVLDQEDDW-LEGYSDSNPAVNLAPQNLAYVIYTS 1727

Query: 180  GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYA 236
            G+TG+PKG  + H ++  ++    EA++ ++AD  L          V  LF     PL  
Sbjct: 1728 GSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF----WPLIN 1783

Query: 237  GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
            GA +   P     G  +   +   +      + +T    VP+M  +L+Q           
Sbjct: 1784 GARLVIAPP----GAHRDPEQLIQL---IERQQVTTLHFVPSMLQQLLQ---------MD 1827

Query: 297  ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
                    LR ++CG  AL +  ++ W E +    L   YG TE
Sbjct: 1828 EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTE 1871

Length = 3956

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 81/364 (22%), Positives = 138/364 (37%), Gaps = 109/364 (29%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+R D ++ SY +L   + ++++ L +                 L  G G R+G++ 
Sbjct: 2   DAIALRDDDRTLSYAELDERSNQLAARLRA-----------------LGVGPGDRVGVLL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S + VA +L    +G   VPL  SYP   L +++ D++ +++L+              
Sbjct: 45  ERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT-------------- 90

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                             +D A ++YTSG+TGKPKGV  +H+++
Sbjct: 91  --------------------------------DPDDLAYVIYTSGSTGKPKGVEVSHRAL 118

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA------------LLAPLYAGATVEFM 243
              +  +       ++D+ L             A            LL PL +GATV   
Sbjct: 119 VNFLLSMARRPGLGASDRLL-------------AVTTISFDISVLELLLPLLSGATVVIA 165

Query: 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
              +VR            +  R    I       T    ++Q   A    L AA     +
Sbjct: 166 SAETVR------------DPERLARLIAD--ERIT----IMQATPATWRMLLAAGWRGRE 207

Query: 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAGTVGNPLP 362
            L   +CG  ALP  + ++  + TG  L   YG TE  + +    +  A    T+G P+ 
Sbjct: 208 SLTA-LCGGEALPRDLAERLLS-TGAELWNMYGPTETTIWSTCARVTAADGPVTIGRPIA 265

Query: 363 GVQV 366
             QV
Sbjct: 266 NTQV 269

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 88/388 (22%), Positives = 141/388 (36%), Gaps = 109/388 (28%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            SY ++   AL I S L +  LK                  G +IGI A+   E++    
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKP-----------------GDKIGIFAENRPEWIITEQ 48

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMV----LSTEDYREVLQNVASKSG--AKF 140
             +    + VPL  +  E  + +++++++IS+V    +    + E+      + G   K 
Sbjct: 49  ACFSQSLVIVPLYDTLGEEAIEYILNETEISIVFCDAVKVYSFEELE-----ELGKKNKV 103

Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
              PP P                      ED A I+YTSGTTG PKGV+ TH +I A V 
Sbjct: 104 PPTPPKP----------------------EDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141

Query: 201 MLTEAWEYTSADQFLHC--LPLHHVHGLFNALLAPLYAGATVEFMPKFS--VRGIWQRWR 256
            + +          ++   LPL H+       +  LY G  + +   +S   RG+    +
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVC-LYIGGRIGY---YSGDTRGLKGDIK 197

Query: 257 ESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---------ASAAKQ--- 304
           E  P          T F GVP +  R+   Y+ +  ++ A           A   K    
Sbjct: 198 ELKP----------TVFVGVPRVLDRI---YKGILAKVNAKGGLKRTLFNFAYNYKLAAL 244

Query: 305 --------------------------LRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
                                     +RLM+ G + L     +      G  +L+ YG+T
Sbjct: 245 RRGHGYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLT 304

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQV 366
           E     +    G    G VG PLP  ++
Sbjct: 305 ETCAGGTLSDPGDTTTGHVGPPLPCCEI 332

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 86.2 bits (213), Expect = 4e-18
 Identities = 80/332 (24%), Positives = 124/332 (37%), Gaps = 49/332 (14%)

Query: 14   ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
            A +++A+    +  SY +L S A R++  L +                    G   R+ I
Sbjct: 2016 APEAIAVVFGDQHLSYAELDSRANRLAHRLRA-----------------RGVGPEVRVAI 2058

Query: 74   VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
             A+ SFE V  +L    +G   VPL  +YP   L +++ DS  +++L+     E L   A
Sbjct: 2059 AAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPA 2118

Query: 134  SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHT 191
                        V  +  +         +     +  GE+ A ++YTSG+TG PKGV  +
Sbjct: 2119 G-----------VARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167

Query: 192  HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
            H ++ A  Q   E +E + AD  L  +      G       PL  GA V       +R  
Sbjct: 2168 HGALVAHCQAAGERYELSPADCELQFMSF-SFDGAHEQWFHPLLNGARV------LIRDD 2220

Query: 252  WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
                 E       R G  I  F   P    +L +          A        +R+   G
Sbjct: 2221 ELWDPEQLYDEMERHGVTILDF--PPVYLQQLAE---------HAERDGRPPAVRVYCFG 2269

Query: 312  SSALPLPVM-QQWETITGHRLLERYGMTEFVM 342
              A+P   +   WE +    L   YG TE V+
Sbjct: 2270 GEAVPAASLRLAWEALRPVYLFNGYGPTEAVV 2301

Length = 5163

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 91/360 (25%), Positives = 143/360 (39%), Gaps = 70/360 (19%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             + YSY +L     R ++L  S  ++      K +  A+    C         P F F 
Sbjct: 34  VVRRYSYLELNEEINRTANLFYSLGIR------KGDKVALHLDNC---------PEFIFC 78

Query: 83  AGVLGTWFS----GCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA 138
                 WF     G I VP+       E   ++ +S  S+++++  +  + + +  +   
Sbjct: 79  ------WFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDAT 132

Query: 139 KFSLI-------PPVPNVSSETTVFDQSQAEKMDGQR---GEDPALIVYTSGTTGKPKGV 188
               I       P    VSS T +  Q Q   +        +D A I++TSGTT +PKGV
Sbjct: 133 PLRHICLTRVALPADDGVSSFTQLKAQ-QPATLCYAPPLSTDDTAEILFTSGTTSRPKGV 191

Query: 189 VHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           V TH ++  +      AW+      D +L  +P  H+     A +A   AGAT   + K+
Sbjct: 192 VITHYNL--RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY 249

Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ-L 305
           S R  W +  + Y     RA    T    +P M   L+         +Q  SA+  +  L
Sbjct: 250 SARAFWGQVCK-Y-----RA----TITECIPMMIRTLM---------VQPPSANDRQHCL 290

Query: 306 RLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNP 360
           R +M       L +  Q    +E   G RLL  YGMTE  V  I +     R+  ++G P
Sbjct: 291 REVM-----FYLNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRP 345

Length = 517

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 43/215 (20%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D A I+++SG+ G+PKGV+ +H +I + ++ +++ +   + D  L  LP  H  GL   
Sbjct: 782 DDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVT 841

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPT---MYT 281
           L  PL  G  V + P               P +     + +     T   G PT   +Y 
Sbjct: 842 LWLPLLEGIKVVYHPD--------------PTDALGIAKLVAKHRATILLGTPTFLRLYL 887

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF- 340
           R  +        L  AS      LRL++ G+  L   V   +E   G R+LE YG TE  
Sbjct: 888 RNKKL-----HPLMFAS------LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETS 936

Query: 341 -VMAISNP--------LRGARKAGTVGNPLPGVQV 366
            V +++ P         +   K G+VG PLPGV V
Sbjct: 937 PVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAV 971

Length = 1146

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 83.7 bits (207), Expect = 1e-17
 Identities = 89/395 (22%), Positives = 151/395 (38%), Gaps = 81/395 (20%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
           R+++ +R     Y++ QLA +  R++  L                   L    G R+GI 
Sbjct: 34  REALVVRHQALRYTWRQLADAVDRLARGL-----------------LALGVQPGDRVGIW 76

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
           A    E++     T   G I V +  +Y  SEL + +  S +  V+      T DY  +L
Sbjct: 77  APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAML 136

Query: 130 QNVAS--KSGAKFSLIPP-----------VPNVSSETTVFD--QSQAEKMDGQR------ 168
           Q +      G   +L               P        +   Q++ E +  +       
Sbjct: 137 QELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQA 196

Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               +DP  I YTSGTTG PKG   +H +I      + E+   T  D+    +PL+H  G
Sbjct: 197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG 256

Query: 226 LFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
           +  A L  +  GA +      F P  +++ +                E  TA  GVPTM+
Sbjct: 257 MVLANLGCMTVGACLVYPNEAFDPLATLQAV--------------EEERCTALYGVPTMF 302

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE 339
              +   +  + +L +        LR  +   +  P+ VM++  + +    +   YGMTE
Sbjct: 303 IAELDHPQRGNFDLSS--------LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTE 354

Query: 340 -----FVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
                     ++ L   R+  TVG   P ++V ++
Sbjct: 355 TSPVSLQTTAADDLE--RRVETVGRTQPHLEVKVV 387

Length = 558

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 83.9 bits (207), Expect = 2e-17
 Identities = 89/371 (23%), Positives = 139/371 (37%), Gaps = 76/371 (20%)

Query: 13   MARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--AR 70
            M  D+VA+  D++  +Y +L   A R++  L                   +A G G    
Sbjct: 4563 MTPDAVAVVFDEEKLTYAELNRRANRLAHAL-------------------IARGVGPEVL 4603

Query: 71   IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
            +GI  + S E + G+L    +G   VPL   YP   L ++M DS  +++L+      +LQ
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLT---QSHLLQ 4660

Query: 131  NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTSGT 181
             +    G   SL                 + E  +G    DPA+         ++YTSG+
Sbjct: 4661 RLPIPDGLA-SL--------------ALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705

Query: 182  TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
            TG+PKGV  +H S+   +    E +E T  D+ L  +      G    L  PL  GA+V 
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSF-SFDGSHEGLYHPLINGASVV 4764

Query: 242  FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
                     +W   R    ++ +R    +T     P    +L +  E  D E  +     
Sbjct: 4765 IRDD----SLWDPERLYAEIHEHR----VTVLVFPPVYLQQLAEHAER-DGEPPS----- 4810

Query: 302  AKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRGARKAGT---- 356
               LR+   G  A+        W  +    L   YG TE  + +   L  AR        
Sbjct: 4811 ---LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVL--LWKARDGDACGAA 4865

Query: 357  ---VGNPLPGV 364
               +G PL   
Sbjct: 4866 YMPIGTPLGNR 4876

Length = 5163

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 82/369 (22%), Positives = 143/369 (38%), Gaps = 54/369 (14%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           M + K   K  S+  + +AI+ + +  +Y     S  ++++ L         +++KN+  
Sbjct: 1   MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWL-------NEKESKNK-- 51

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                     I I+ +   EF+    G   +G   VPL + + + EL   +  S+  M++
Sbjct: 52  ---------TIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV 102

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
            TE Y+  L ++  + G    +      +      +    A   + Q    P  + +TSG
Sbjct: 103 -TERYK--LNDLPDEEGRVIEIDEWKRMIEKYLPTY----APIENVQ--NAPFYMGFTSG 153

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           +TGKPK  +   +S           +     D  L    L H   L+ A+   LY G TV
Sbjct: 154 STGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST-LYVGQTV 212

Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
             M KF    +  +             E I+    VPTM   L +    ++ +++  S S
Sbjct: 213 HLMRKFIPNQVLDKLE----------TENISVMYTVPTMLESLYKENRVIENKMKIIS-S 261

Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE--FVMAISNPLRGARKAGTV 357
            AK                 ++ + I  + +L E YG +E  FV A+       R+  +V
Sbjct: 262 GAK-----------WEAEAKEKIKNIFPYAKLYEFYGASELSFVTALV-DEESERRPNSV 309

Query: 358 GNPLPGVQV 366
           G P   VQV
Sbjct: 310 GRPFHNVQV 318

Length = 487

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 31/209 (14%)

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
               +  +DPA+I++TSG+ G PKGVV +H+++ A    +    +++  D+  + LP+ H
Sbjct: 786 YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
             GL   L+ PL +G  V   P               P++     E I   T    ++  
Sbjct: 846 SFGLTGGLVLPLLSGVKVFLYPS--------------PLHYRIIPELIYD-TNATILF-- 888

Query: 283 LIQGYEAMDTELQAASASAA----KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
                   DT L   +  A     + LR +  G+  +     Q W    G R+LE YG+T
Sbjct: 889 ------GTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVT 942

Query: 339 EF--VMAISNPLRGARKAGTVGNPLPGVQ 365
           E   V+A++ P+    KAGTVG  LPG++
Sbjct: 943 ETAPVIALNTPM--HNKAGTVGRLLPGIE 969

Length = 1140

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 81.9 bits (203), Expect = 4e-17
 Identities = 72/352 (20%), Positives = 120/352 (34%), Gaps = 69/352 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +  +Y +L ++  R+++ L +  +                 G G R+ +V 
Sbjct: 30  DRTAVVDGPRRLTYRELDAAVDRLAAGLLALGI-----------------GPGDRV-LVQ 71

Query: 76  KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            P   EFV      +  G I V    ++   E+ H                       A 
Sbjct: 72  LPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHF----------------------AR 109

Query: 135 KSGAKFSLIPPVPNVSSETTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +S AK  +I          + FD  + A ++  +   D AL   + GTTG PK +  TH 
Sbjct: 110 QSEAKAYIIAD------RFSGFDYAALAREL-LEELPDVALFQLSGGTTGLPKLIPRTHN 162

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGIW 252
                 +   EA        +L  LP  H   L +  LL  L AG TV      S    +
Sbjct: 163 DYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAF 222

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
                          E +T    VP +    ++  E    +L +        LR++  G 
Sbjct: 223 PLIER----------EKVTHTALVPALLNLWLEAAEWDQADLSS--------LRVIQVGG 264

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNPLPG 363
           + L   + ++ E   G  L + +GM E ++  +           T G P+  
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISP 316

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 87/346 (25%), Positives = 130/346 (37%), Gaps = 52/346 (15%)

Query: 49  KTTSEKTKNENSAVLAG-------GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
            TT+ +  ++  A LAG       G G R+ I+     EFV  VL     G IAVP+   
Sbjct: 41  NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100

Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV--SSETTVFDQS 159
               E+  ++ D    +V+ TE     L  VA+       L+  V     SS+ +V    
Sbjct: 101 LTPPEIAFLVSDCGAHVVV-TEA---ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYE 156

Query: 160 QAEKMDGQR------GED-PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
                 G          D PALI+YTSGTTG+PKG V TH ++  Q              
Sbjct: 157 DLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINS 216

Query: 213 QFLHC-LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEA 269
                 +PL H+ G+ + +L  L  GA     P   F    +                E 
Sbjct: 217 DVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVL----------EAEK 265

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP---VMQQWETI 326
           +T    VP  +  +            A   +  + L L +    A P     + Q   T 
Sbjct: 266 VTGIFLVPAQWQAVC-----------AEQQARPRDLALRVLSWGAAPASDTLLRQMAATF 314

Query: 327 TGHRLLERYGMTEFVMAISNPLRG---ARKAGTVGNPLPGVQVSMI 369
              ++L  +G TE +  ++  L G    RK G+VG  +P V   ++
Sbjct: 315 PEAQILAAFGQTE-MSPVTCMLLGEDAIRKLGSVGKVIPTVAARVV 359

Length = 542

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 81.5 bits (202), Expect = 7e-17
 Identities = 81/359 (22%), Positives = 147/359 (40%), Gaps = 65/359 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI  ++K  ++ +L  + + ++  L +  +K                  G R+ ++ 
Sbjct: 17  DRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVK-----------------KGDRVALLM 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           K   E +  +      G +AV L       ELL  + D+++  +++ +D+       A  
Sbjct: 60  KNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF------EAKL 113

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK-- 193
                     + N   E    +    E+ D    ++ A I+YTSGTTGKPKGV+ T+   
Sbjct: 114 IPGISVKFAELMNGPKE----EAEIQEEFDL---DEVATIMYTSGTTGKPKGVIQTYGNH 166

Query: 194 ---SIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              ++ + + + LTE       D +L  +P+ H+ GL + L+  +  G  V  + KF   
Sbjct: 167 WWSAVGSALNLGLTE------DDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAE 219

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
            I +  +             +T  + V TM  RL++        L   +  +    R M+
Sbjct: 220 KINKLLQTG----------GVTIISVVSTMLQRLLE-------RLGEGTYPS--SFRCML 260

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTVGNPLPGVQV 366
            G    P P+++Q +   G  + + YGMTE    I   +P     K G+ G PL   ++
Sbjct: 261 LGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCEL 318

Length = 483

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 42/171 (24%)

Query: 81  FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF 140
           F A +LG    G I VPL+                     +T++++  L  V +     F
Sbjct: 57  FWACILG----GIIPVPLS-------------------YGNTDEHKLKLLRVWNILNNPF 93

Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
            LI             D+     +     +D A I ++SG+TG+PKGV+ THK++   ++
Sbjct: 94  -LI------------TDRDSLLSLP----DDIAFIQFSSGSTGEPKGVILTHKNLLTNIE 136

Query: 201 MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVR 249
            + EA E TS D FL  +PL H  GL    L P   G     MP   F  R
Sbjct: 137 AIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRR 187

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 81.1 bits (201), Expect = 1e-16
 Identities = 67/304 (22%), Positives = 122/304 (40%), Gaps = 61/304 (20%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLA--------LSYPESELLHVMHDS 114
           L    G R+  +A  +       L  +F    AVP                ++ ++++ +
Sbjct: 45  LGVKPGDRVATLAWNTHRH----LELYF----AVPGMGAVLHTLNPRLSPEQIAYIINHA 96

Query: 115 DISMVLSTEDYREVLQNVASK----------SGAKFSLIPPVPNVSSETTVFDQSQAEKM 164
           +  ++   +D+  +L+ +A +            A           + E  + ++S   + 
Sbjct: 97  EDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEW 156

Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHH 222
                   A + YTSGTTG PKGVV++H+S+        L ++   + +D  L  +P+ H
Sbjct: 157 PELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFH 216

Query: 223 VH--GLFNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
           V+  GL  A  A +  GA +        P   +  I                E +T   G
Sbjct: 217 VNAWGLPYA--ATM-VGAKLVLPGRYLDPASLLDLI--------------EEEKVTVSAG 259

Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           VPT++  L+   EA   +L +        LR ++ G SALP  ++++ E   G  ++  +
Sbjct: 260 VPTIWLGLLNYLEANGKDLSS--------LRRVVVGGSALPRSLIEKLEER-GVEVIHAW 310

Query: 336 GMTE 339
           GMTE
Sbjct: 311 GMTE 314

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 70/234 (29%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D  A+     + +Y +L   A R+++ L                   L G  G  + + 
Sbjct: 5   PDRPALVVGGDTLTYAELKERADRLAARL-----------------LALGGRAGDPVAVY 47

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
              S +  A +L    +G   VPL  S P   +  ++  +  + +++  D          
Sbjct: 48  GHKSPDAYAAILACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD---------- 97

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                                               D A I++TSG+TGKPKGV  +H +
Sbjct: 98  ------------------------------------DLAYILFTSGSTGKPKGVQISHAN 121

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPK 245
           + + +  + E ++ T  D F +  P      V  LF AL     +GAT+  +PK
Sbjct: 122 LASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFPALA----SGATLYVIPK 171

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 79.8 bits (197), Expect = 4e-16
 Identities = 66/237 (27%), Positives = 98/237 (41%), Gaps = 52/237 (21%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           ED A I YTSGTTG PKGVV TH ++ A V   + + ++  +D  +  LPL H++   N 
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQ 280

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           ++  L+ G  V F  +     +        P          T F  VP +Y R+   Y+ 
Sbjct: 281 IVM-LHYGVAVGFY-QGDNLKLMDDLAALRP----------TIFCSVPRLYNRI---YDG 325

Query: 290 MDTELQAAS---------ASAAKQ----------------------------LRLMMCGS 312
           +   ++ +          A  AK+                            +R M  G+
Sbjct: 326 ITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGA 385

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           S L   VM+      G R+LE YGMTE    IS    G   +G VG+P P  +V ++
Sbjct: 386 SPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLV 442

Length = 651

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 49/315 (15%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +GI  + S E V G+L    +G   VPL   YP+  L +++ DS + ++L+    
Sbjct: 560 GPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL 619

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP---------ALIV 176
              L               PVP     +   D+     + G  G +P         A ++
Sbjct: 620 LAQL---------------PVP-AGLRSLCLDEPADL-LCGYSGHNPEVALDPDNLAYVI 662

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           YTSG+TG+PKGV  +H ++   V ++ E  +  + D  L              L   L +
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTF-AFDLGVTELFGALAS 721

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           GAT+  +P    R                A + +T    VP+    L          LQA
Sbjct: 722 GATLHLLPPDCARDAEAFAALM-------ADQGVTVLKIVPSHLQAL----------LQA 764

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMAISN-PLRGA--- 351
           +  +  +  R ++CG  AL + ++ +      G RL+  YG TE  + +S   L      
Sbjct: 765 SRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERD 824

Query: 352 RKAGTVGNPLPGVQV 366
                +G PL  + +
Sbjct: 825 FGNVPIGQPLANLGL 839

Length = 3956

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 78.4 bits (193), Expect = 8e-16
 Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 28/206 (13%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D   ++YTSGTTG+PKGV+HT  ++ + +    E  E    D  L   P+ H  G    
Sbjct: 195 DDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYG 254

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP-TMYTRLIQGYE 288
           L+ PL   AT        ++ IW         N  RA E I   TGV  TM         
Sbjct: 255 LMMPLILNATA------VLQDIW---------NPARAAELIRE-TGVTFTM------AST 292

Query: 289 AMDTELQAA---SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAI 344
              T+L  A   S +    L   +C  + +P  ++++   + G  ++  +GMTE   + +
Sbjct: 293 PFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTV 352

Query: 345 SNPLRGARKAGTV-GNPLPGVQVSMI 369
           + P     KA T  G PLPGV+V +I
Sbjct: 353 TEPDDALEKASTTDGRPLPGVEVKVI 378

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 86/377 (22%), Positives = 145/377 (38%), Gaps = 64/377 (16%)

Query: 14  ARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72
             D +A+  +   SY+Y  L  +A R+++ L +  ++                  G R+ 
Sbjct: 36  MPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEP-----------------GDRVA 78

Query: 73  IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---- 128
                  EF    L     G ++VPL  S+ E+EL+ V++     M  +   +++     
Sbjct: 79  FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVD 138

Query: 129 ----LQN-VASKSGAKF--SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
               LQN +           L P   ++S    + D           G++ A +++TSGT
Sbjct: 139 LILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGT 198

Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV- 240
            G PKGV+ TH +I A  +        T  D F+   PL H  G  + + AP   GA   
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV 258

Query: 241 ---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
               F P   +  +             +  +  T   G       L+   E    +L A 
Sbjct: 259 LLDIFTPDACLALL------------EQ--QRCTCMLGATPFIYDLLNLLEKQPADLSA- 303

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE----FVMAISNPLRGAR 352
                  LR  +CG + +P  V ++  +   G +LL  YG TE     V+ + +PL  +R
Sbjct: 304 -------LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESSPHAVVNLDDPL--SR 352

Query: 353 KAGTVGNPLPGVQVSMI 369
              T G    GV++ ++
Sbjct: 353 FMHTDGYAAAGVEIKVV 369

Length = 547

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 74/364 (20%), Positives = 135/364 (37%), Gaps = 117/364 (32%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
           Y++ QL  ++ R+++ L    ++                  G R+G+    S E     L
Sbjct: 7   YTFGQLKDASNRLANALRELGVER-----------------GDRVGVYLPQSPETAIAHL 49

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
             +  G ++VPL++ +    + H + DS  + VL T+                       
Sbjct: 50  AVYKLGAVSVPLSVLFGPDAVEHRLRDSG-ARVLVTD----------------------- 85

Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
                                  +DPA+++YTSGTTG PKG +H H+ +   +  +   +
Sbjct: 86  ---------------------GSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124

Query: 207 E---------YTSADQFLHCLPLHHVHGLFNALLAPLYAGATV------EFMPKFSVRGI 251
           E         +T AD          + GL + LL  LY G  V       F P+ +   +
Sbjct: 125 ELAPRPGDVFWTPAD-------WAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFA-L 176

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            +R+  +             AF  +P    ++++          +  A    +LR +  G
Sbjct: 177 MRRYGVT------------NAF--LPPTALKMMRRVG-------SERARYDLRLRAVASG 215

Query: 312 SSALPLPVMQQWETITGHRLL-----ERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQ 365
             +L    + +W        L     E YG TE  + + N    G  + G++G P+PG +
Sbjct: 216 GESLG-EELLEW----ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHE 270

Query: 366 VSMI 369
           V+++
Sbjct: 271 VAVV 274

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 76.4 bits (188), Expect = 4e-15
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D  LI +TSGTTG+PKGV  +H ++  Q         Y   D +LH  PL H+ GL +A
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            LA L  GA    +PKF  +   Q  ++            +T+   VP M   LI     
Sbjct: 232 -LAMLMVGACHVLLPKFDAKAALQAIKQ----------HNVTSMITVPAMMADLI----- 275

Query: 290 MDTELQAASASAA--KQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE 339
               L   S +      +R ++ G  +L   ++    +     +L   YGMTE
Sbjct: 276 ---SLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE 325

Length = 563

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 75.2 bits (185), Expect = 7e-15
 Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNA 229
           +P  I +TSGTTG PK   H+H S+   +++    W + T +D   +      +     +
Sbjct: 175 EPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWS 234

Query: 230 LLAPLYAGATV--EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
           L +P   GA V    +P+F  + I Q     YP         IT F   PT+Y  L+Q  
Sbjct: 235 LFSPWIQGACVFVHHLPRFDPKVILQTL-SKYP---------ITTFCSAPTVYRMLVQ-- 282

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
                  Q  ++   K LR  + G   L   V++QW+  TG  L E YG TE  +  +N 
Sbjct: 283 -------QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANF 335

Query: 348 LRGARKAGTVGNPLPGVQVSMI 369
                K G++G   P   V +I
Sbjct: 336 KGMKIKPGSMGKASPPYDVQII 357

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D   ++YTSGTTG+PKGV+HT  ++ A +    E     + D  L   P+ H  G    
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYG 256

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           L+ P+  GAT        ++ IW   R +  +      E +T FT   T +         
Sbjct: 257 LMMPVMLGATA------VLQDIWDPARAAELI----RTEGVT-FTMASTPF--------L 297

Query: 290 MD-TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNP 347
            D T     S      LR  +C  + +P  ++++     G +++  +GMTE   + ++  
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL 357

Query: 348 LRGARKAGTV-GNPLPGVQVSMI 369
                +A T  G PLPGV+V ++
Sbjct: 358 DDPDERASTTDGCPLPGVEVRVV 380

Length = 547

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 68/305 (22%), Positives = 120/305 (39%), Gaps = 35/305 (11%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +G+  + S E V  +L    +G   VPL   YP   L +++ DS + ++LS    
Sbjct: 559 GPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQ--- 615

Query: 126 REVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQR--GEDPALIVYTSGTT 182
                   S  G K  L   V  +       + +  +E+  G     E+ A ++YTSG+T
Sbjct: 616 --------SHLGRKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGST 667

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
           GKPKG  + H+++  ++  + +A+     D  L   P      ++     PL +GA +  
Sbjct: 668 GKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVV 726

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
                 R   +              E +     VP+M    +Q +      LQ    ++ 
Sbjct: 727 AAPGDHRDPAKLVELI-------NREGVDTLHFVPSM----LQAF------LQDEDVASC 769

Query: 303 KQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRGARKAGTV--GN 359
             LR ++C   ALP    +Q +  +    L   YG TE  + +++         +V  G 
Sbjct: 770 TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR 829

Query: 360 PLPGV 364
           P+  +
Sbjct: 830 PIANL 834

Length = 5163

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 59/228 (25%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
           + +DPA I++TSG+TG PKGVV+TH++  AQ+  L   +     D+ L   P      LF
Sbjct: 83  KADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPP---FALF 139

Query: 228 NALL--------------APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              L              A L      + +                     R   A   F
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAI---------------------REIGASCVF 178

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRL 331
            G P +   + +  E    +L +        LR ++   + +P  +++++         +
Sbjct: 179 -GSPALLKNVARYCEENGIQLPS--------LRRVLSAGAPVPPDLLRRFVANLMPEAEI 229

Query: 332 LERYGMTEF----------VMAISNPLRGARKAGTVGNPLPGVQVSMI 369
              YG TE           V+A S     A     VG+P+PG+ V +I
Sbjct: 230 HTPYGATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRII 277

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 78/362 (21%), Positives = 136/362 (37%), Gaps = 81/362 (22%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
            S SY QL      ++  L +  +K                    RI +    S ++V  
Sbjct: 1   DSLSYQQLWQEVDLLAEQLRALGVK--------------------RIALALDNSIDWVIA 40

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST--EDYREVLQNVASKSGAKFSL 142
            L    +G + +P+   +   +  H+++D+   +++S   +    +    A+     +  
Sbjct: 41  DLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDAASALHTPFATLGEDLYIA 100

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
           + P  N      +                 A I YTSG+TG+PKGV  +  +++   Q L
Sbjct: 101 LRPSAN---PVELP-------------AGTAKITYTSGSTGQPKGVCLSAAALETVAQSL 144

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNA--LLAPLYAGATVEFMP----------KFSVR- 249
            EA      ++ L  LPL  +  L N   + APL  GATV  +P                
Sbjct: 145 AEAIAILEPERHLCLLPLATL--LENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQ 202

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
                 RW+               +   VP +   L+                  + LR 
Sbjct: 203 FVAALSRWQ-------------PHSLILVPQLLMALVA--------AVEQGPLPPESLRF 241

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQ 365
           +  G + +   ++Q+   + G  + E YG++E   V++++ P  GA + G+VG PLP VQ
Sbjct: 242 VAVGGARVSPSLLQRARAL-GLPVYEGYGLSECASVVSLNTP--GADRPGSVGKPLPHVQ 298

Query: 366 VS 367
           VS
Sbjct: 299 VS 300

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 72.5 bits (178), Expect = 7e-14
 Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 37/203 (18%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTSADQFLHCLPLHHVH 224
           +D ALI +TSGTTG PKG +H H+ I A    + +A+     + T  D F+   PL    
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRDILA----ICDAFPRHVLQPTPDDVFIGSPPLAFTF 202

Query: 225 GLFNALLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYT 281
           GL   +L PL  GA+   + + +   +    Q  R            A   FT  PT   
Sbjct: 203 GLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHR------------ATILFT-APT--- 246

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-F 340
                Y AM  +++A   S+   LR  +     LP  V Q W   TG ++++  G TE  
Sbjct: 247 ----AYRAMLIKVKAFDISS---LRKCVSAGETLPAKVWQDWYERTGLKIIDGIGATEML 299

Query: 341 VMAISNPLRGARKAGTVGNPLPG 363
            + IS     A+   T G P+PG
Sbjct: 300 HIFISANEENAKPGAT-GKPVPG 321

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 33/213 (15%)

Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQM---LTEAWEYTSADQFLHCLPLHHVHG---L 226
           A  ++TSG+TG PK V++T + + A + M   L            L  +P +H  G    
Sbjct: 223 AKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIW----QRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
           FN L   L+ G T+       + G++    +  RE  P          T +  VP  Y  
Sbjct: 283 FNGL---LWGGGTLYIDDGKPLPGMFEETIRNLREISP----------TVYGNVPAGYAM 329

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE----TITGHR--LLERYG 336
           L    EAM+ +  A   S  K LRLM  G + L   + ++ +      TGHR      YG
Sbjct: 330 LA---EAMEKD-DALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYG 385

Query: 337 MTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
            TE     +       + G +G PLPGV++ + 
Sbjct: 386 ATETAPTTTGTHWDTERVGLIGLPLPGVELKLA 418

Length = 624

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 72.3 bits (178), Expect = 8e-14
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 46/219 (21%)

Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCLPLHHVHG---LF 227
           A  ++TSG+TG PK V++TH+ + A   M+ + W + + +    +  LP +H  G    F
Sbjct: 167 AKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNF 226

Query: 228 NALLA---PLY--AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
           N +L     LY   G  V  + + ++R +    RE  P          T +  VP     
Sbjct: 227 NMVLYNGGTLYIDDGKPVPGLFEETLRNL----REVSP----------TVYFNVP----- 267

Query: 283 LIQGYEAMDTELQAASASAA---KQLRLMMCGSSALPLPVMQQWETI-------TGHR-- 330
             +G+E +   L+  +A      K+LRL+    +ALP  V   W+ +       TG R  
Sbjct: 268 --KGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDV---WDRLQALAVRTTGERIP 322

Query: 331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           +    G TE     +       ++G +G P PG ++ ++
Sbjct: 323 MTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV 361

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 69/298 (23%), Positives = 112/298 (37%), Gaps = 35/298 (11%)

Query: 71   IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
            +G+  + S E V G+L    +G   VPL   YPE  L +++ DS   ++LS    R    
Sbjct: 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR---- 3165

Query: 131  NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
                       L   V  +  +    + ++A        E+ A ++YTSG+TGKPKGV  
Sbjct: 3166 ---------LPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGI 3216

Query: 191  THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
             H ++   +  + +A+     D+ L              L  PL +GA V       V  
Sbjct: 3217 RHSALSNHLCWMQQAYGLGVGDRVLQFTTF-SFDVFVEELFWPLMSGARV-------VLA 3268

Query: 251  IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
              + WR+   +      E +      P+M              L+   A     L+ ++C
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAF----------LEEEDAHRCTSLKRIVC 3318

Query: 311  GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT--VGNPLPGVQV 366
            G  ALP  + QQ     G  L   YG TE  + +++            +G P+     
Sbjct: 3319 GGEALPADLQQQV--FAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRAC 3374

Length = 5163

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 54/197 (27%), Positives = 75/197 (38%), Gaps = 30/197 (15%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
           DPA  +YTSGTTG PK  + +H+      A    L         D    CLPL+H + L 
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLL---KPDDVLYLCLPLYHSNALT 138

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
               + L AGA++    KFS    W   R         A    TAF  V  +  R +   
Sbjct: 139 VGWSSALAAGASLALRRKFSASQFWPDVRR------YGA----TAFQYVGEL-CRYLLNQ 187

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISN 346
                +           LR  + G+   P  +  +++   G  R++E YG TE  +   N
Sbjct: 188 PEKPDDRDH-------PLR-KIIGNGLRP-DIWDEFKERFGVPRIVEFYGSTEGNVGFIN 238

Query: 347 PLRGARKAGTVGNPLPG 363
                 K G VG   P 
Sbjct: 239 LF---NKPGAVGRLPPA 252

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 67/338 (19%), Positives = 123/338 (36%), Gaps = 54/338 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    + Y+Y +      R++S L                 + L  G G  + ++A
Sbjct: 19  DRTAVVYGDRRYTYRETYDRCRRLASAL-----------------SKLGIGKGDVVAVLA 61

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +   +    G   +G + VPL       ++  +++ S+  ++   +++  + +   + 
Sbjct: 62  PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE------------DPALIVYTSGTTG 183
              K  +   +  +S      ++   E +    G+            DP  + YTSGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLL-AGGDPDPLPIPPDDEWDPISLNYTSGTTG 180

Query: 184 KPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
            PKGVV+TH+   A +  L     W       +L  LP+ H +G +    A    G T  
Sbjct: 181 NPKGVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNG-WCFPWAITAVGGTHV 237

Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
            + K     I+    +            +T   G PT+   L    E       A     
Sbjct: 238 CLRKVDAPAIYDLIEK----------HKVTHLCGAPTVLNMLANAPE-------ADKLPL 280

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
            + +R+M  G+   P P + +     G  +   YG+TE
Sbjct: 281 PRPVRVMTAGAP--PPPAVIKKMEELGFEVTHVYGLTE 316

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 11/199 (5%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G  + ++     EFV   LG    G +       Y  +E+      S   ++++   Y +
Sbjct: 75  GDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVD 134

Query: 128 VLQNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
            L+ +A   G     I   P      SE T  D+++  +++    +D   + Y+SGTTG 
Sbjct: 135 KLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEIS-PDDVVALPYSSGTTGL 193

Query: 185 PKGVVHTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           PKGV+ THK    S+  QV        + S D  L  LP+ H++ L + LL  L  GA +
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAI 253

Query: 241 EFMPKF---SVRGIWQRWR 256
             MPKF   ++  + QR +
Sbjct: 254 LIMPKFEIGALLELIQRHK 272

Length = 537

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 69.4 bits (170), Expect = 5e-13
 Identities = 85/352 (24%), Positives = 138/352 (39%), Gaps = 88/352 (25%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            SY +L   + R+++LL                 A L    G R+  +   + E V  +L
Sbjct: 1   LSYAELREQSARVANLL-----------------ADLGVKPGDRVAGLLPRTPELVVAIL 43

Query: 87  GTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP 145
            TW  G I VPL  ++ P++          I   L     + V+ N A++          
Sbjct: 44  ATWRVGAIYVPLFTAFGPKA----------IEYRLGHSGAKVVVTNAANRG--------- 84

Query: 146 VPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA 205
                            K+D    +D    +YTSGTTG PKGV     ++ A    +  A
Sbjct: 85  -----------------KLD----DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYA 123

Query: 206 WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQ---RWRESYPV 261
            +    D F +       +GL+ A+  PL  G T  F+   F+    +    R       
Sbjct: 124 IDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLG----- 178

Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL--PV 319
                   +T F G PT Y  L+            A A+A  +L+L +  S+  PL   V
Sbjct: 179 --------VTNFAGSPTAYRMLMA---------AGADAAARIKLKLRVASSAGEPLNPEV 221

Query: 320 MQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVSMI 369
           ++ ++   G  + + YG TE  M + N   L    +AG++G PLPG +++++
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVL 273

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 79/347 (22%), Positives = 136/347 (39%), Gaps = 74/347 (21%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAV---PLALSYPESELLHVMHDS---------- 114
           G RI +      ++   V G   +G I V   PL   Y   E+ H  +DS          
Sbjct: 75  GDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPL---YTAREMEHQFNDSGAKALVCLAN 131

Query: 115 ------------DISMVLSTE------DYREVLQNVASKSGAKFSLIPP--VPNVSSETT 154
                        +  V+ TE        + +L N   K   K  ++P   +P       
Sbjct: 132 MAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKK--MVPAYHLPQAVKFND 189

Query: 155 VFDQSQAEKMD--GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWEYT 209
              +   + +     + +D A++ YT GTTG  KG + TH+++ A   Q + L  +    
Sbjct: 190 ALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE 249

Query: 210 SADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNG 263
             +  +  LPL+H++   F+ +   L     +       +P   V+ +  +W+       
Sbjct: 250 GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAM-VKEL-GKWK------- 300

Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
                  + F G+ T++  L       +   +    SA   L+L + G  AL L   ++W
Sbjct: 301 ------FSGFVGLNTLFVALCN-----NEAFRKLDFSA---LKLTLSGGMALQLATAERW 346

Query: 324 ETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVSMI 369
           + +TG  + E YGMTE    +S NP   A + GT+G P+P     +I
Sbjct: 347 KEVTGCAICEGYGMTETSPVVSVNP-SQAIQVGTIGIPVPSTLCKVI 392

Length = 562

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 37/213 (17%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH--------CLPL 220
            ED A + YT GTTG  KG + TH+++ A +        Y      LH         LPL
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL--EQAKAAYGP---LLHPGKELVVTALPL 259

Query: 221 HHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGVP 277
           +H+  L  N LL  +  G     +   + R I    +E   YP          TA TGV 
Sbjct: 260 YHIFALTVNCLLF-IELGGQNLLIT--NPRDIPGFVKELKKYPF---------TAITGVN 307

Query: 278 TMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM 337
           T++  L+   E    EL  +S      L+L + G  A+   V ++W  +TG  LLE YG+
Sbjct: 308 TLFNALLNNEEF--QELDFSS------LKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGL 359

Query: 338 TEFVMAIS-NPLRGARKAGTVGNPLPGVQVSMI 369
           TE    +S NP      +G++G P+P  ++ ++
Sbjct: 360 TECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLV 392

Length = 560

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 69.5 bits (171), Expect = 6e-13
 Identities = 54/254 (21%), Positives = 89/254 (35%), Gaps = 30/254 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+  + +S SY +L + A R +    +  +                 G G  + ++ 
Sbjct: 52  DRPALLFEDQSISYAELNARANRYAHWAAARGV-----------------GKGDVVALLM 94

Query: 76  KPSFEFVAGVLGTWFSGCIAV---------PLALSYPESELLHVMHDSDISMVL-STEDY 125
           +   E++A  LG    G +            LA S    +  H++   ++          
Sbjct: 95  ENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD 154

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
                 +    G          ++++       +      G   +D A  +YTSGTTG P
Sbjct: 155 LARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLP 214

Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
           K  V +H      +         T  D    CLPL+H  G   A  + L AGAT+    K
Sbjct: 215 KAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK 274

Query: 246 FSVRGIW---QRWR 256
           FS    W   +R+R
Sbjct: 275 FSASRFWDDVRRYR 288

Length = 600

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 31/182 (17%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EA--WEYTSADQ-FLHCLPLHH 222
           + +D A I+Y+SGTTG  KGVV TH+++ A V++    EA  +EY  +D  +L  LP+ H
Sbjct: 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFH 255

Query: 223 VHGLFNALLAPLYAGATVEFMPKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           ++GL   ++  L  G+T+  M +F     V+ I  R++             +T F  VP 
Sbjct: 256 IYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVI-DRFK-------------VTHFPVVPP 301

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
           +   L +       + +       K L+ + CG++ L    +Q + +T+     ++ YGM
Sbjct: 302 ILMALTK-------KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354

Query: 338 TE 339
           TE
Sbjct: 355 TE 356

Length = 560

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 39/215 (18%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAW------EYTSADQ--FLHCLP 219
            +D A + YT GTTG  KG    H++I A V QM  EAW      +    DQ  F+  LP
Sbjct: 203 PDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM--EAWLQPAFEKKPRPDQLNFVCALP 260

Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGV 276
           L+H+  L    LL  +  G     +P  + R I    +E   Y V+          F  V
Sbjct: 261 LYHIFALTVCGLLG-MRTGGRNILIP--NPRDIPGFIKELKKYQVH---------IFPAV 308

Query: 277 PTMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
            T+Y  L+    ++ +D            +L +   G  A+  PV ++W  +TG  + E 
Sbjct: 309 NTLYNALLNNPDFDKLDF----------SKLIVANGGGMAVQRPVAERWLEMTGCPITEG 358

Query: 335 YGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVSM 368
           YG++E   +A  NP+     +GT+G PLP  +VS+
Sbjct: 359 YGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSI 393

Length = 557

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 86/379 (22%), Positives = 144/379 (37%), Gaps = 72/379 (18%)

Query: 19  AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78
            I +  +  S+D+LA  A R +  L +                V  G C A   ++ +  
Sbjct: 4   TIISGDRRRSFDELAQRAARAAGGLAA--------------LGVRPGDCVA---LLMRND 46

Query: 79  FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK--S 136
           F F          G  AVP+   +   E+ +++ DS   ++++  D   +L  +AS   +
Sbjct: 47  FAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHAD---LLHGLASALPA 103

Query: 137 GAKFSLIPPVPNVSSE-------------TTVFDQ--SQAEKMDGQRGEDPALIVYTSGT 181
           G     +P  P +++                 ++   +Q E  DG     P  ++YTSGT
Sbjct: 104 GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGT 163

Query: 182 TGKPKGVVH---THKSIDAQVQMLTEAWEYTSADQFLHCLPLHH----VHGLFNALLAPL 234
           TG PKGV     T +   A  QM    +      + L   PL+H     +GL    L   
Sbjct: 164 TGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRL--- 220

Query: 235 YAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             G  +   P+F    +  + +R R             IT    VPTM+ RL++  E + 
Sbjct: 221 --GGVLVLQPRFDPEELLQLIERHR-------------ITHMHMVPTMFIRLLKLPEEVR 265

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRG 350
            +   +S      LR ++  ++  P  V +      G  + E YG TE   +  +     
Sbjct: 266 AKYDVSS------LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDA 319

Query: 351 ARKAGTVGNPLPGVQVSMI 369
               GTVG   PG ++  +
Sbjct: 320 LSHPGTVGKAAPGAELRFV 338

Length = 509

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.9 bits (167), Expect = 2e-12
 Identities = 90/353 (25%), Positives = 138/353 (39%), Gaps = 86/353 (24%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE---- 123
           G R+GI A    E+V     T   G I V +  +Y  SEL + ++ S    +++ +    
Sbjct: 68  GDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKD 127

Query: 124 -DYREVLQNVA-----SKSGA------------------KFSLIPPVPNVSSETTVFDQS 159
            DY  +L  +A      + G                   K   +     + +     D +
Sbjct: 128 SDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDA 187

Query: 160 Q-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL 218
           + A +      +DP  I YTSGTTG PKG   TH++I      + EA + T  D+    +
Sbjct: 188 ELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV 247

Query: 219 PLHHVHGLFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
           PL+H  G+    LA +  GAT+      F P  ++  + +              E  TA 
Sbjct: 248 PLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEE--------------ERCTAL 293

Query: 274 TGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL-MMCGSSALPLPVMQQWE----- 324
            GVPTM+   I    A       A    +S    LR  +M GS   P+ VM++       
Sbjct: 294 YGVPTMF---I----AELDHPDFARFDLSS----LRTGIMAGSPC-PIEVMKRVIDKMHM 341

Query: 325 ---TITGHRLLERYGMTE-----FVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
              TI        YGMTE           +PL   ++  TVG  LP ++V ++
Sbjct: 342 SEVTIA-------YGMTETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIV 385

Length = 559

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 80  EFVAGVLGTWFSGCIAVPLALSYP-ES-------ELLHVMHDSDISMVLSTEDYREVLQN 131
           ++VA   G  ++G IAVP   +YP ES        LL ++ D++  ++L+  D R+ L  
Sbjct: 76  DYVAAFFGCLYAGVIAVP---AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQ 132

Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVV 189
           +   + A     P +  V +     D + AE       + +D A + YTSG+T  PKGV 
Sbjct: 133 MEELAAAN---APELLCVDT----LDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQ 185

Query: 190 HTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            +H ++ A  Q++   +  +    D  +  LPL+H  GL   LL P+++G     M    
Sbjct: 186 VSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAY 245

Query: 248 VRGIWQRWRES 258
                 RW E+
Sbjct: 246 FLERPLRWLEA 256

Length = 4334

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 81/347 (23%), Positives = 128/347 (36%), Gaps = 77/347 (22%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
           YSY +L   + R +++L S                 L  G G R+  +   S E     L
Sbjct: 1   YSYQELKELSARFANVLAS-----------------LGVGKGERVFTLLPRSPELYVAAL 43

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
           GT   G +  PL  ++    +   +   +  ++++T                        
Sbjct: 44  GTLKLGAVYGPLFSAFGPEPIRDRLELGEAKVLITTP----------------------- 80

Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
                          E+ D    EDPAL+ +TSGTTGKPKGV+H H+++ A         
Sbjct: 81  ------------ELYERTDP---EDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125

Query: 207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT-VEFMPKFSVRGIWQRWRESYPVNGNR 265
           +    D +        V G    ++APL  G T V    +F       RW          
Sbjct: 126 DLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAE----RWYGIL------ 175

Query: 266 AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-PVMQQW- 323
             E +T +   PT    L      M    + A+      LR +   S   PL P +  W 
Sbjct: 176 EEEKVTVWYTAPTALRML------MRAGPELAARYDLSSLRHIA--SVGEPLNPEVVVWG 227

Query: 324 ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E + G  + + +  TE   + I+N      K G++G PLPG++ ++I
Sbjct: 228 EKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPLPGIEAAVI 274

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 41/212 (19%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA------DQFLHCLPLHHV 223
           +D A + YT GTTG  KG + TH+++ A +Q     W   +       +  +  LPL+H+
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ-AHQWLAGTGKLEEGCEVVITALPLYHI 266

Query: 224 HGLF-NALLAPLYAG-----ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
             L  N L+     G     +    MP F V+ + ++ R              TAFTGV 
Sbjct: 267 FALTANGLVFMKIGGCNHLISNPRDMPGF-VKEL-KKTR-------------FTAFTGVN 311

Query: 278 TMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           T++  L+   G++ +D             L++ + G  A+   V ++W+ +TG  L+E Y
Sbjct: 312 TLFNGLLNTPGFDQIDFS----------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAY 361

Query: 336 GMTEFV-MAISNPLRGARKAGTVGNPLPGVQV 366
           G+TE    A  NPL      G++G P+P    
Sbjct: 362 GLTETSPAACINPLTLKEYNGSIGLPIPSTDA 393

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
            R +DPAL++ TSG+TG PK VV TH++I A+     +   +T  D  L+ +PL HV G+
Sbjct: 164 ARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHVGGI 223

Query: 227 FNALLAPLYAGA 238
               L  +Y G 
Sbjct: 224 VMLHLRDVYLGC 235

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 71/321 (22%), Positives = 117/321 (36%), Gaps = 71/321 (22%)

Query: 61  AVLAG---GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
           A+L     G G R+ +      +F     G    G + VP++  + E EL + ++D+   
Sbjct: 73  ALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAE 132

Query: 118 MVLSTEDYREVLQNVASKSG-------AKFSLIP-----PVPNVSSETTVFDQSQAEKMD 165
           ++L+ +    V++ V +++        +   ++P     P+P+      +      + + 
Sbjct: 133 VLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLP 192

Query: 166 GQRGE------------DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
             R                A + YT GTTG PKG  HT +       M+  A    +   
Sbjct: 193 ALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQR------DMVYTAAAAYAVAV 246

Query: 214 -------FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRA 266
                  FL  LP   + G    LL PL++GAT+  +          RW           
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLL---------ARW----------- 286

Query: 267 GEAITAFTGVP----TMYTRLIQGY-EAMDTELQAASASAAKQLRLMMCGSSALPL-PVM 320
            +A+     V     T    L+    E MD      +      LR +   S    L P  
Sbjct: 287 -DAVAFMAAVERYRVTRTVMLVDNAVELMDHP--RFAEYDLSSLRQVRVVSFVKKLNPDY 343

Query: 321 -QQWETITGHRLLE-RYGMTE 339
            Q+W  +TG  L E  +GMTE
Sbjct: 344 RQRWRALTGSVLAEAAWGMTE 364

Length = 567

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 51/234 (21%), Positives = 76/234 (32%), Gaps = 62/234 (26%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
           K+++Y +     LR +  L            +N  S       G  + I    S EFV  
Sbjct: 4   KTWTYSETYDLVLRYAHWL---------HGDRNVQS-------GDFVAIDTTNSAEFVFL 47

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
            L  W  G +   +  +     L+H +  S    V+   D                    
Sbjct: 48  WLALWSIGAVPAFINYNLSGDPLIHCLKISGAKFVIVDPD-------------------- 87

Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
                                     DPA ++YTSGTTG PKG   + +        L+ 
Sbjct: 88  --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121

Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES 258
                  D+   C+PL+H    F  L   L +G T+    KFS    W+  R+S
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDS 175

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 47/320 (14%)

Query: 61  AVLAG-GC--GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
           AVL   GC  G R+ ++A+ S   VA        G I VPL      SEL  ++ D++  
Sbjct: 37  AVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPR 96

Query: 118 MVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
           ++L  +        VA+       L   + +  +            +  +R    +LI++
Sbjct: 97  LLLGDD-------AVAAGRTDVEDLAAFIASADALEPAD----TPSIPPER---VSLILF 142

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGT+G+PKGV+ + +++              +   FL   P+ H+ GL  ++   L  G
Sbjct: 143 TSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202

Query: 238 ATVE----FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
            ++     F PK ++       R   P  G      IT +  VP M  +  +     D  
Sbjct: 203 GSILVSNGFEPKRTLG------RLGDPALG------ITHYFCVPQM-AQAFRAQPGFD-- 247

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVMAISNPLR 349
                A+A + L  +  G +      +  W    G  +++ +GM+E    F M++ +   
Sbjct: 248 -----AAALRHLTALFTGGAPHAAEDILGWLD-DGIPMVDGFGMSEAGTVFGMSV-DCDV 300

Query: 350 GARKAGTVGNPLPGVQVSMI 369
              KAG  G P P VQ  ++
Sbjct: 301 IRAKAGAAGIPTPTVQTRVV 320

Length = 488

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 27/197 (13%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEA-WEYTSADQFLHCLPLHHVHG 225
             E PA + YTSGTTG PKG V   ++ +++V  M T+A   +   +  L  +PL+HV G
Sbjct: 150 EPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIG 209

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRL 283
            F  L+A L            ++ G +    E  P +  +  E   +T+    PT    L
Sbjct: 210 FFAVLVAAL------------ALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDAL 257

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
               E    +L          L  +    + +P  V+++         +  YG TE + +
Sbjct: 258 AAAAEGAPLKL--------DSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNS 309

Query: 344 ISNPLRGARKAGTVGNP 360
           +        + GT   P
Sbjct: 310 LYMR---DPRTGTEMRP 323

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 66.5 bits (163), Expect = 7e-12
 Identities = 59/226 (26%), Positives = 90/226 (39%), Gaps = 59/226 (26%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D A I++TSG+TG PKGVV+TH   +AQ++ L E +     +  L   PL     LF  
Sbjct: 174 DDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPL---FALFGP 230

Query: 230 LLAPLYAGAT--VEFM---------PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
            L     G T  +  M         P      I                  +T   G P 
Sbjct: 231 AL-----GMTSVIPDMDPTRPATVDPAKLFAAI--------------ERYGVTNLFGSPA 271

Query: 279 MYTRLIQGYEAMDTELQAASASAAK--QLRLMMCGSSALPLPVMQQWETITGH--RLLER 334
           +  RL           +   A+  K   LR ++   + +P+ V++++  +      +L  
Sbjct: 272 LLERL----------GRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTP 321

Query: 335 YGMTEFVMAISN-----PLRGARK-----AGT-VGNPLPGVQVSMI 369
           YG TE  + IS+      L   R      AG  VG P+ GV+V +I
Sbjct: 322 YGATE-ALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRII 366

Length = 552

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 73/354 (20%), Positives = 133/354 (37%), Gaps = 56/354 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+ A+   +  +SY ++    + +++LL    +K                        VA
Sbjct: 473 DAPALADARYQFSYREMREQVVALANLLRERGVKP------------------GDSVAVA 514

Query: 76  KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            P S      +     +G   +PL   YP+  L  ++ D+  S++++T D      +V  
Sbjct: 515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPD 574

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            +   ++                   A  +   +    A I++TSG+TG+PKGV+    +
Sbjct: 575 LTSLCYNAPLAPQ------------GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTA 622

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
           I  ++  +   +  T+ D  L   P      V   F     P  AGA +      + R  
Sbjct: 623 IVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF----WPFIAGAKLVMAEPEAHRD- 677

Query: 252 WQRWRESYPVNGNR--AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
                   P+   +  A   +T    VP+M    +    ++  E    +  +   LR + 
Sbjct: 678 --------PLAMQQFFAEYGVTTTHFVPSMLAAFVA---SLTPE---GARQSCASLRQVF 723

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLP 362
           C   ALP  + ++W+ +TG  L   YG TE  + +S  P  G   A   G+ +P
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVP 777

Length = 1296

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 73/370 (19%), Positives = 133/370 (35%), Gaps = 81/370 (21%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             +  +Y +L + + R++  L +  L+                  G  + I+ + + EF 
Sbjct: 8   SGEVVTYGELEARSNRLAHGLRALGLRE-----------------GDVVAILLENNPEFF 50

Query: 83  AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
                   SG    P+      +E+ +++ DS   +++ +    +    +A++  A    
Sbjct: 51  EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAG--- 107

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPA------LIVYTSGTTGKPKGVVH--THKS 194
             P+  V +      +S  E +  Q     A       ++Y+SGTTG+PKG+        
Sbjct: 108 -VPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLD 166

Query: 195 IDA---QVQMLTEAWEYTSADQ-FLHCLPLHHVHGLFNALLAPL-------YAGATVEFM 243
            D     +  L     Y   D  +L   PL+H         APL         G TV  M
Sbjct: 167 PDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHT--------APLRFGMSALALGGTVVVM 218

Query: 244 PKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
            KF     +  I +R+R             +T    VPTM+ R+++  E +      +S 
Sbjct: 219 EKFDAEEALALI-ERYR-------------VTHSQLVPTMFVRMLKLPEEVRARYDVSS- 263

Query: 300 SAAKQLRLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTEFVM-AISNPLRGARKA 354
                LR+ +  ++  P+ V +     W  I    + E Y  +E     +          
Sbjct: 264 -----LRVAIHAAAPCPVEVKRAMIDWWGPI----IHEYYASSEGGGVTVITSEDWLAHP 314

Query: 355 GTVGNPLPGV 364
           G+VG  + G 
Sbjct: 315 GSVGKAVLGE 324

Length = 502

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 55/269 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D VA+    +  +Y +L   A R++  L +  L                 G G  +GI A
Sbjct: 18  DRVALVCGDRRLTYAELEERANRLAHYLIAQGL-----------------GPGDHVGIYA 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           +   E+V  +LG + +  + V +   Y E EL +++ DSD   ++   ++   +  V  +
Sbjct: 61  RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120

Query: 136 -------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTT 182
                        SG           V  E  +   S  E+  G+R  D   ++YT GTT
Sbjct: 121 LPKLRTLVVVEDGSGND----LLPGAVDYEDALAAGS-PERDFGERSPDDLYLLYTGGTT 175

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAW--------EYTSADQ--------FLHCLPLHHVHGL 226
           G PKGV+   + I  +V +    +        E   A +             PL H  G 
Sbjct: 176 GMPKGVMWRQEDI-FRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ 234

Query: 227 FNALLAPLYAGATVEFMP--KFSVRGIWQ 253
           + A  A L++G TV  +P  +F    +W+
Sbjct: 235 WAAFAA-LFSGQTVVLLPDVRFDADEVWR 262

Length = 533

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 54/232 (23%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCL 218
                    +  A  ++TSG+TG PK V++TH+ + A  QML + + + + +    +  L
Sbjct: 200 DAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWL 259

Query: 219 PLHHVHG---LFNALLA---PLY--AGA-TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
           P +H  G       +L     LY   G  T     + ++R +    RE  P         
Sbjct: 260 PWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDE-TLRNL----REISP--------- 305

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---QLRLMMCGSSALPLPVMQQWETI 326
            T +  VP        G+E +   L+  +A   +   +L+L+    +AL   V   W+ +
Sbjct: 306 -TVYFNVPK-------GWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDV---WDRL 354

Query: 327 -------TGHR--LLERYGMTE---FVMAISNPLRGARKAGTVGNPLPGVQV 366
                   G R  ++   GMTE        + P     +AG +G P PG +V
Sbjct: 355 DRVAEATCGERIRMMTGLGMTETAPSATFTTGP---LSRAGNIGLPAPGCEV 403

Length = 614

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 30/208 (14%)

Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL--PLHH 222
           D  R +DP L+ +TSGTTG PK V+HTH S      + T  W           +  P   
Sbjct: 79  DETRADDPILLYFTSGTTGLPKLVLHTHVSYPVG-HLSTMYWIGLQPGDIHLNISSPGWA 137

Query: 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
            H  +++  AP  AGATV  +  P+F  R       +            +T F   PT++
Sbjct: 138 KHA-WSSFFAPWNAGATVFGINYPRFDARRYLGALEKF----------GVTTFCAPPTVW 186

Query: 281 TRLIQ-GYEAMDTELQAASASAAKQLRLMMCGSSALPLP-VMQQWETITGHRLLERYGMT 338
              IQ      D  L+ A  SA + L            P V+++ +   G  + + YG T
Sbjct: 187 RMFIQQDLAQYDVRLREA-VSAGEPLN-----------PEVIERVKKAWGLTIRDGYGQT 234

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQV 366
           E    I N      K G++G PLPG +V
Sbjct: 235 ETTAMIGNSPGQKVKPGSMGRPLPGYRV 262

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 85/349 (24%), Positives = 136/349 (38%), Gaps = 59/349 (16%)

Query: 47  DLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESE 106
           DLK  S K  N   A L  G G  + +  K  +EF   +L     G IA+P        +
Sbjct: 52  DLKDYSNKAANFFKA-LGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKD 110

Query: 107 LLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLI---PPVPN--------VSSET 153
           +++ +  + I M++   +    E +   A + G+   L+    PVP         + + +
Sbjct: 111 IVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENAS 170

Query: 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
             F++      D    +D  L+ +TSGTTG PK V H H                 +A +
Sbjct: 171 PDFERPTGN--DATCNDDILLVYFTSGTTGMPKMVEHDH---------TYPLGHIVTA-K 218

Query: 214 FLHCLPLHHVH------GLFNALLAPLY----AGATVEF---MPKFSVRGIWQRWRESYP 260
           +   +    +H      G   A+   LY    AGA V F     KF  + + ++  E Y 
Sbjct: 219 YWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIAGAAV-FVYDYDKFDPKNLLEKI-EKY- 275

Query: 261 VNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320
                    +T F   PT+Y  LI+     D      S+     LR        L   V 
Sbjct: 276 --------GVTTFCAPPTIYRFLIK----EDLSKYDLSS-----LRYCTTAGEPLNPEVF 318

Query: 321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
             ++  TG +L+E +G TE  + I+       K G++G P PG  + +I
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDII 367

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 35/199 (17%)

Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH------VMHDSDISM 118
           G  G R  I+A    E++   LG   +G IAVPL++    +   H      V+ D+  S+
Sbjct: 56  GSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGA---HDERVSAVLRDTSPSV 112

Query: 119 VLSTE-DYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
           VL+T     +V + VA + G      PPV  +  +    D  +      +     A + Y
Sbjct: 113 VLTTSAVVDDVTEYVAPQPGQS---APPV--IEVDLLDLDSPRGSDARPRDLPSTAYLQY 167

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC-------------LPLHHVH 224
           TSG+T  P GV+ +H+++ A  + L        +D F                LP +H  
Sbjct: 168 TSGSTRTPAGVMVSHRNVIANFEQLM-------SDYFGDTGGVPPPDTTVVSWLPFYHDM 220

Query: 225 GLFNALLAPLYAGATVEFM 243
           GL   + AP+  G      
Sbjct: 221 GLVLGVCAPILGGCPAVLT 239

Length = 578

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 18/213 (8%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
           G R+ I+A  + +++    G  ++G IAVPL   + P     LH V+ D   S +L+T  
Sbjct: 79  GDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTD 138

Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
             E  R+  +   +K   +   +  VP+    T V    +A +      +  A + YTSG
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWV--PPEANE------DTIAYLQYTSG 190

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           +T  P GV  TH ++   V  + +A E    D+ +  LP  H  GL   LL  L  G  +
Sbjct: 191 STRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPAL-LGHYI 249

Query: 241 EFM-PKFSVRGIWQRWRESYPVNGNRAGEAITA 272
            FM P   VR    RW           G   +A
Sbjct: 250 TFMSPAAFVRRPG-RWIRELARKPGGTGGTFSA 281

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 70   RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            R+G+  + S E V G+L    +G   VPL   YP   L +++ DS I ++LS     E L
Sbjct: 2240 RVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEAL 2299

Query: 130  QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
              + +   A++ L      ++        S A        +  A ++YTSG+TGKPKGVV
Sbjct: 2300 GELPA-GVARWCLEDDAAALA------AYSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVV 2352

Query: 190  HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATV 240
             +H  I    Q + E +   + D  LH   ++     F+A    LL PL  GA V
Sbjct: 2353 VSHGEIAMHCQAVIERFGMRADDCELHFYSIN-----FDAASERLLVPLLCGARV 2402

Length = 4334

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 60/275 (21%), Positives = 100/275 (36%), Gaps = 30/275 (10%)

Query: 66   GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
            G    +G+  + S E +  +L    +G   VPL   YP   L +++ DS + ++L+    
Sbjct: 3143 GPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHL 3202

Query: 126  REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
             E L   A  +      +       +  +              GE+ A ++YTSG+TGKP
Sbjct: 3203 LEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM----------GENLAYVIYTSGSTGKP 3252

Query: 186  KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
            KGV   H ++   +  + EA+E  + D+ L  +      G     L  L  G  +     
Sbjct: 3253 KGVGVRHGALANHLCWIAEAYELDANDRVLLFMSF-SFDGAQERFLWTLICGGCL----- 3306

Query: 246  FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
              VR       E      +    +I  F   P    +            + A  +    L
Sbjct: 3307 -VVRDNDLWDPEELWQAIHAHRISIACF--PPAYLQQF----------AEDAGGADCASL 3353

Query: 306  RLMMCGSSALPLPVMQQWETITGHR-LLERYGMTE 339
             + + G  A+P    +Q +     R L   YG TE
Sbjct: 3354 DIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTE 3388

Length = 3956

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 25/196 (12%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--------SYPESELLHVMHDS-DISM 118
           G R+ ++A+   +FV       ++G + VPL L        SY     L  M  S   + 
Sbjct: 74  GDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESY--IAQLRGMLASAQPAA 131

Query: 119 VLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIV 176
           +++ ++    +      +     L             F       +   R   +D A + 
Sbjct: 132 IITPDELLPWVNEATHGNPLLHVLSH---------AWFKALPEADVALPRPTPDDIAYLQ 182

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
           Y+SG+T  P+GV+ TH+++ A ++ ++ +  +    D+ +  LP +H  GL   LL P+ 
Sbjct: 183 YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVA 242

Query: 236 AGATVEFMP--KFSVR 249
              +V+++P   F+ R
Sbjct: 243 TQLSVDYLPTRDFARR 258

Length = 579

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 25/167 (14%)

Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PKGV+++H+S  + A +    +A   ++AD  L  +PL H +    A  AP 
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 235 YAGATVEFMPKFSVRG--IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
                V  MP   + G  +++              E +T   GVPT++  L+Q  E    
Sbjct: 244 MGTKLV--MPGAKLDGASVYELL----------DTEKVTFTAGVPTVWLMLLQYMEKEGL 291

Query: 293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
           +L          L++++CG SA+P  +++ +E + G  +   +GMTE
Sbjct: 292 KL--------PHLKMVVCGGSAMPRSMIKAFEDM-GVEVRHAWGMTE 329

Length = 542

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 63/179 (35%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+    +S +Y +L   A R+++ L                      G  +R+G+  
Sbjct: 14  DAIAVVCGDESLTYAELNRRANRLAARL-----------------RAAGVGPESRVGVCL 56

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S + V  +L    +G   VPL  +YP   L +++ D+   +VL+  D           
Sbjct: 57  RRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTDPD----------- 105

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                                              D A ++YTSG+TG+PKGV   H++
Sbjct: 106 -----------------------------------DLAYVIYTSGSTGRPKGVAIEHRN 129

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 39/217 (17%)

Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEY 208
             +TV+D  + ++         A I Y++GTTG PKGVV++H+S+  Q   L  T++   
Sbjct: 168 GRSTVYDWPELDE------TTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV 221

Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAG 267
           T  + FL C+P++HV   +   LA   +G  + F  P  S   + +    + P   +   
Sbjct: 222 THGESFLCCVPIYHVLS-WGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--- 277

Query: 268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT 327
                  GVPT++ +L+  Y     E  +        L+ +  G SA+P  +++ WE   
Sbjct: 278 -------GVPTLWIQLMVHYLKNPPERMS--------LQEIYVGGSAVPPILIKAWEERY 322

Query: 328 GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV 364
           G  ++  +GMTE     ++P+      GTV  P  GV
Sbjct: 323 GVDVVHVWGMTE-----TSPV------GTVARPPSGV 348

Length = 576

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 36/215 (16%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ----------FLHCLP 219
           +D A++ YT GTTG  KG + TH ++ A +  +         D            +  LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266

Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGI---WQRWRESYPVNGNRAGEAITAFTG 275
           L+H++    N +   +     V       + G      +WR              +A  G
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWR-------------FSALLG 313

Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           + T++  L+      D +  A        L+L   G +AL     ++WE +TG  ++E Y
Sbjct: 314 LNTLFVALMDHPGFKDLDFSA--------LKLTNSGGTALVKATAERWEQLTGCTIVEGY 365

Query: 336 GMTEFV-MAISNPLRGARKAGTVGNPLPGVQVSMI 369
           G+TE   +A +NP     + GTVG P+PG  + +I
Sbjct: 366 GLTETSPVASTNPYGELARLGTVGIPVPGTALKVI 400

Length = 562

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 19/23 (82%), Positives = 22/23 (95%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTH 192
           +DPA+I+YTSGTTGKPKG VHTH
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 94/402 (23%), Positives = 152/402 (37%), Gaps = 116/402 (28%)

Query: 15  RDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70
           +D VA+R    + ++ Y+Y +L   + + +++L                   L    G R
Sbjct: 58  KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDR 100

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREV- 128
           + I      E    +LG   +G I  PL  ++ E  +   + DS+  ++++T        
Sbjct: 101 VFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP 160

Query: 129 ------LQNV-----ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
                 L++V       + G        +   +S+   FD    E  D    ED A++ Y
Sbjct: 161 ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDE--FD---IEWTDR---EDGAILHY 212

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHH------------VH 224
           TSG+TGKPKGV+H H   +A +Q   T  +           L LH             V 
Sbjct: 213 TSGSTGKPKGVLHVH---NAMLQHYQTGKY----------VLDLHEDDVYWCTADPGWVT 259

Query: 225 GLFNALLAPLYAGAT-----VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
           G    + AP   GAT       F P+      W R  E Y V         T +   PT 
Sbjct: 260 GTSYGIFAPWLNGATNVIDGGRFSPER-----WYRILEDYKV---------TVWYTAPTA 305

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL--------PL-PVMQQW-ETITGH 329
              L+            A     K+  L     S+L        PL P + +W   + G 
Sbjct: 306 IRMLMG-----------AGDDLVKKYDL-----SSLRHILSVGEPLNPEVVRWGMKVFGL 349

Query: 330 RLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVSMI 369
            + + + MTE   +M I+N      K G++G PLPG++ +++
Sbjct: 350 PIHDNWWMTETGGIM-IANYPAMDIKPGSMGKPLPGIEAAIV 390

Length = 570

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 28/179 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A     +  +Y QL   +  +++ + S  L         + S ++  G         
Sbjct: 17  DFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKL--------PDKSPIIVFG--------- 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E +A  LG   +G   +P+ +S P   +  ++  +  S++++TE+    +  +   
Sbjct: 60  HMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVI 119

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
           +  +      + ++ +    +D   A K     G+D   I++TSGTTGKPKGV  +H +
Sbjct: 120 TLDE------LKDIFATGNPYDFDHAVK-----GDDNYYIIFTSGTTGKPKGVQISHDN 167

Length = 503

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
           G      AL +YTSGTTG PK    +H  +  Q   +      T+ D     LPL+H  G
Sbjct: 138 GVSIRSTALYIYTSGTTGLPKAARISHLRV-LQCSGMLSLCGVTADDVVYTTLPLYHSSG 196

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIW 252
               ++  +  GAT+   PKFS    W
Sbjct: 197 ALLGIVGCIGLGATLVLKPKFSASQFW 223

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 31/186 (16%)

Query: 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQ 213
           FD++QA  +            YTSGTTG PKG +++H+S  + A    L +A   ++ D 
Sbjct: 173 FDENQASSL-----------CYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDA 221

Query: 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
            L  +P+ HV+       APL     V   P    + +++              E +T  
Sbjct: 222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELI----------EAERVTFS 271

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
            GVPT++  L+         ++ A    +  LR  + G SA P  +++ +E   G  ++ 
Sbjct: 272 AGVPTVWLGLLN-------HMREAGLRFST-LRRTVIGGSACPPAMIRTFEDEYGVEVIH 323

Query: 334 RYGMTE 339
            +GMTE
Sbjct: 324 AWGMTE 329

Length = 539

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 84/402 (20%), Positives = 150/402 (37%), Gaps = 92/402 (22%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y ++  +A+RI S + S  +                   G R GI      E++  +  
Sbjct: 79  TYKEVYDAAIRIGSAIRSRGVNP-----------------GDRCGIYGSNCPEWIIAMEA 121

Query: 88  TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
               G   VPL  +   + +  +++ +++S+    E     + +   K  +    I    
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFG 181

Query: 148 NVSSE---------TTVFDQSQAEKMDGQRGEDPA-------LIVYTSGTTGKPKGVVHT 191
           +VSSE          + F   +   M     E P         I+YTSGTTG+PKGV+ T
Sbjct: 182 DVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241

Query: 192 HKSIDAQV----QMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAP--LYAGATVEFMP 244
           +++I A+V     +L       T  D +   LPL HV   ++ ++    +  GA++ F  
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV---YDQVIETYCISKGASIGFW- 297

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--------------- 289
           +  +R + +  +   P          T F GVP +Y R+  G                  
Sbjct: 298 QGDIRYLMEDVQALKP----------TIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDF 347

Query: 290 --------MDTELQAASAS---------AAKQ-----LRLMMCGSSALPLPVMQQWETIT 327
                   +   L+   AS           K+     +RL++ G++ LP  V +     +
Sbjct: 348 AYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTS 407

Query: 328 GHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQVSM 368
              L + YG+TE        +       GTVG P+  ++  +
Sbjct: 408 CSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARL 449

Length = 660

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 3/32 (9%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
            E MD    EDP  I+YTSG+TGKPKGVVHT 
Sbjct: 219 PEPMDA---EDPLFILYTSGSTGKPKGVVHTT 247

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 3/35 (8%)

Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           D+ + E MD    EDP  I+YTSG+TGKPKGV+HT
Sbjct: 235 DECEPEPMDA---EDPLFILYTSGSTGKPKGVLHT 266

Length = 637

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 84/363 (23%), Positives = 134/363 (36%), Gaps = 92/363 (25%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            ++A+R + +  ++ QL +   ++++      +         E S V          +  
Sbjct: 18  QAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVV--------EGSGVA---------LRG 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           K S E +   L     G   +PL    P+  L  ++    +   L  E            
Sbjct: 61  KNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGEN--------- 111

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
               FS +  +     E        A     QR    A +  TSG+TG PK  VHT ++ 
Sbjct: 112 ---TFSALTSLHLQLVEGA-----HAVAWQPQR---LATMTLTSGSTGLPKAAVHTAQAH 160

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP-LYAGATVEFMPKFSVRGIWQR 254
            A  + +     +T+ D +L  LPL HV G    ++   LYAGAT+              
Sbjct: 161 LASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ--GIVWRWLYAGATLVV------------ 206

Query: 255 WRESYPVNGNRAGEAITAFTG---VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            R+  P+      +A+   T    VPT   RL+            +   + K + L   G
Sbjct: 207 -RDKQPLE-----QALAGCTHASLVPTQLWRLLD---------NRSEPLSLKAVLL---G 248

Query: 312 SSALPLPVMQQWE-----TITGHRLLERYGMTEF---VMAISNPLRGARKAGTVGNPLPG 363
            +A+P+ + +Q E        G      YG+TE    V A     R    AG VG+PLPG
Sbjct: 249 GAAIPVELTEQAEQQGIRCWCG------YGLTEMASTVCAK----RADGLAG-VGSPLPG 297

Query: 364 VQV 366
            +V
Sbjct: 298 REV 300

Length = 458

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
            DP ++++TSGTTG PK V  +H  +    + LTE +  T  D     +PL H + +  A
Sbjct: 150 MDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVM-A 208

Query: 230 LLAP-LYAGATVEFMPKFSVRG 250
             AP + +GA V    KFS  G
Sbjct: 209 GWAPAVASGAAVALPAKFSASG 230

Length = 540

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 9/186 (4%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVP--LALSYPESE-----LLHVMHDSDISMVL 120
           G R+ +V     +F+A   G  ++G I VP    LS   S+     L  + H   +++ L
Sbjct: 35  GDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVAL 94

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYT 178
           ++E   + L++  +    KF   P +    +E     +   +          D A I Y 
Sbjct: 95  TSEACLKGLRSKTTGEILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYK 154

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +   G   GV  TH+++    Q L +A +YT     ++ L      G ++  L  +  G 
Sbjct: 155 TSKEGSVMGVTVTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGM 214

Query: 239 TVEFMP 244
               +P
Sbjct: 215 HTILIP 220

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 31/212 (14%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
            +  ED A+I++TSGT   PKGV  TH ++ A  +   + +     D  +  LP  H +G
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYG 238

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESY-PVNGNRAGEAI-----TAFTGVPTM 279
             +  L PL +G  V F               +Y P+   +  E I     T     P  
Sbjct: 239 FNSCTLFPLLSGVPVVF---------------AYNPLYPKKIVEMIDEAKVTFLGSTPVF 283

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMT 338
           +  +++  +  ++ L +        LR ++ G  A    + Q+      H +L + YG T
Sbjct: 284 FDYILKTAKKQESCLPS--------LRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTT 335

Query: 339 EFVMAIS-NPLRGARKAGTVGNPLPGVQVSMI 369
           E    I+ N +   +    VG P+ G+ V ++
Sbjct: 336 ECSPVITINTVNSPKHESCVGMPIRGMDVLIV 367

Length = 539

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAW-EYTSADQFLHCLPLHHV 223
           +D ALI+YTSGTTG PKGV+HTH S+ A +      L +        + +   LPL H+
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHI 322

Length = 700

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 48/190 (25%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            ++A R   +  +Y QL   + R+++ +    L         + S ++  G         
Sbjct: 15  QTIAYRYQGQELTYQQLKEQSDRLAAFIQKRIL--------PKKSPIIVYG--------- 57

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                 +   LG+  SG   +P+  S P   +  ++  +   +V+ T             
Sbjct: 58  HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTA------------ 105

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ----------RGEDPALIVYTSGTTGKP 185
                     +   +  T +   S  E+ +            +G+D   I+YTSG+TG P
Sbjct: 106 ---------ELSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNP 156

Query: 186 KGVVHTHKSI 195
           KGV  +H ++
Sbjct: 157 KGVQISHDNL 166

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 51/286 (17%)

Query: 66   GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
            G    + I A+ S + + G+L    +G   VPL   YP   L +++ DS + ++L+    
Sbjct: 1179 GPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLT---- 1234

Query: 126  REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTS 179
                             +P    VS      D    +    Q       G++ A ++YTS
Sbjct: 1235 ----------QSHLLERLPQAEGVS--AIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTS 1282

Query: 180  GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
            G+TG+PKGV +TH ++  ++Q +   +    +D  +   P+     ++     PL  G  
Sbjct: 1283 GSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW-PLITGC- 1340

Query: 240  VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY--TRLIQGYEAMDTELQAA 297
                 +  + G  +  R+       R  E +  + GV T++    L+Q +      +   
Sbjct: 1341 -----RLVLAGPGEH-RDPQ-----RIAELVQQY-GVTTLHFVPPLLQLF------IDEP 1382

Query: 298  SASAAKQLRLMMCGSSALPLP----VMQQWETITGHRLLERYGMTE 339
             A+A   LR +  G  ALP      V+Q+   +  H    RYG TE
Sbjct: 1383 LAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLH---NRYGPTE 1425

Length = 4334

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
           P F  + G      SG + V L  +   + L   +  +D  +VL+   + E+L       
Sbjct: 65  PEFSLLLGAAA--LSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD------ 116

Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGVVH 190
                L P V  ++ ++  +    A   D +        +D  ++++TSGT+G PK V  
Sbjct: 117 ----GLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRC 172

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH+ + +   ML + +     D     +PL H + +       L AGA++    KFS  G
Sbjct: 173 THRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232

Length = 529

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 64/313 (20%), Positives = 121/313 (38%), Gaps = 40/313 (12%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G G  + ++ K S  F+       + G + +P+       E+ +++ D+   ++L  E++
Sbjct: 50  GQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF 109

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTG 183
             ++     K       I       +++    Q   E          D   ++YTSGTT 
Sbjct: 110 DAIVALETPK-------IVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTD 162

Query: 184 KPKGVVHTH-----KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +PKGV+H++     KSID        A   T++++ L   PL+HV       +A L+ G 
Sbjct: 163 RPKGVMHSYGNLHWKSIDH-----VIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
           T+    +F          +   V        +T     P M +R++   +    +L +  
Sbjct: 218 TLRIHREF----------DPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS-- 265

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA--ISNPLRGARKAG 355
                 L   + G    P   ++ +    T  R ++ YG+TE      +    R   K G
Sbjct: 266 ------LAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319

Query: 356 TVGNPLPGVQVSM 368
           + G  L  V++ +
Sbjct: 320 STGRALAHVEIRI 332

Length = 497

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 33/209 (15%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLF 227
           G+  A   YTSGTTG PK  +H H      V  M  +A   T  D  L    ++  +GL 
Sbjct: 144 GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLG 203

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT-----GVPTMYTR 282
           N++  PL  G +                    PV    A      F      GVP  + R
Sbjct: 204 NSVWFPLATGGSAVINS--------------APVTPEAAAILSARFGPSVLYGVPNFFAR 249

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFV 341
           +I           + S  + + LR ++    AL L + ++  E   G  +L+  G TE  
Sbjct: 250 VI----------DSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVG 299

Query: 342 MA-ISNPLRGARKAGTVGNPLPGVQVSMI 369
              +SN +   R  GT+G  LP  ++ ++
Sbjct: 300 QTFVSNRVDEWR-LGTLGRVLPPYEIRVV 327

Length = 705

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 3/32 (9%)

Query: 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           + E MD    EDP  I+YTSG+TGKPKGV+HT
Sbjct: 229 EPEPMDS---EDPLFILYTSGSTGKPKGVLHT 257

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 41/214 (19%)

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
            +      E+P+L+ Y+SGTTG+PK +  +   ID +++   EA      +  +   P+ 
Sbjct: 93  LEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVT 152

Query: 222 HVHGLFNALLAPLYAGATVEFM----PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
           H +GL   +LA L  G+    +    PKF         R   P +             VP
Sbjct: 153 HSYGLICGVLAALTRGSKPVIITNKNPKF----ALNILRN-TPQH---------ILYAVP 198

Query: 278 TMY---TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
            M     RL+ G                 Q   +M   + LP     +    T + ++++
Sbjct: 199 LMLHILGRLLPGTF---------------QFHAVMTSGTPLPEAWFYKLRERTTY-MMQQ 242

Query: 335 YGMTEF-VMAISNPLRGARKAGTVGNPLPGVQVS 367
           YG +E   ++I   +   +    +GNPLP V VS
Sbjct: 243 YGCSEAGCVSICPDM---KSHLDLGNPLPHVSVS 273

Length = 414

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 42/206 (20%)

Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQV-QMLT-------EAWEYTSADQFLHCLPLHHVHG 225
           +++ TSGTTG PKG      S  A +  +L+       E     +        P+ H  G
Sbjct: 211 IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPA--------PMFHATG 262

Query: 226 LFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
             +  LA +  G+TV    +F    ++  I  + +              TA   VP M +
Sbjct: 263 WAHLTLA-MALGSTVVLRRRFDPEATLEDI-AKHK-------------ATALVVVPVMLS 307

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF- 340
           R++      D   +  +      L+++    SAL   +  +     G  L   YG TE  
Sbjct: 308 RIL------DLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVA 361

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQV 366
              I+ P   A   GTVG P  GV V
Sbjct: 362 FATIATPEDLAEAPGTVGRPPKGVTV 387

Length = 549

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 24/165 (14%)

Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PKGVV+ H+   ++A   +L  AW       +L  LP+ H +G         
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNIL--AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA 246

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
            AG  V  + K   + I+   RE            +T + G P + + LI          
Sbjct: 247 RAGTNV-CLRKVDPKLIFDLIRE----------HGVTHYCGAPIVLSALINAPAEW---- 291

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
               A     +  M+ G +A P  V+ + E I G  L   YG+TE
Sbjct: 292 ---RAGIDHPVHAMVAG-AAPPAAVIAKMEEI-GFDLTHVYGLTE 331

Length = 545

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 18/213 (8%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
           G R+ I+A    ++VAG      +G IAVPL A   P  +E L   + D++ ++VL+T  
Sbjct: 92  GDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTA 151

Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
             E     L+N+      +   I  +P+ + E+ V  +           +D + + YTSG
Sbjct: 152 AAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDT--------DDVSHLQYTSG 203

Query: 181 TTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           +T  P GV  TH+++    VQM+            +  LPL+H  GL       +Y G +
Sbjct: 204 STRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHS 263

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITA 272
               P   VR   QRW ++    G+R G  +TA
Sbjct: 264 TLMSPTAFVRRP-QRWIKALS-EGSRTGRVVTA 294

Length = 612

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 30/155 (19%)

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTH-------KSIDAQVQMLTEAWEYTSADQF 214
             ++ Q+      ++YTSGTTG PKGV+ +H       K+    + + T   E       
Sbjct: 142 AIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQES-----V 196

Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG-IWQRWRESYPVNGNRAGEAITAF 273
           +  LPL H+      +  P+  G  V F    +++G + +  RE  P          TAF
Sbjct: 197 VSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRP----------TAF 246

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
            GVP       + +E +   ++A  A +    R +
Sbjct: 247 MGVP-------RVWEKIQERMKAVGAKSTGLKRKI 274

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 150 SSETTVFDQSQAEKMDGQRGEDP--------ALIVYTSGTTGKPKGVVHTHKSIDAQVQ- 200
           SS  TV   S+ EK+  +   DP        A+I+YTSG+TG PKGV+ TH +I A V  
Sbjct: 222 SSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG 281

Query: 201 MLTEAWEYTSADQFLHCLPLHHV 223
           ++T   +    D +L  LPL H+
Sbjct: 282 VMTVVPKLGKNDVYLAYLPLAHI 304

Length = 696

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNA 229
           D AL+  TSG+TG PK V  TH ++ A  + +  A E+    D  +  LPL H  G+   
Sbjct: 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGF 212

Query: 230 LLAPLYAGATV 240
           L  P+Y GA +
Sbjct: 213 LTVPMYFGAEL 223

Length = 545

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 124 DYREVLQNVAS--KSGAKFSLIPPV----------PNVSSETTVFDQSQAEKMDGQRGE- 170
           D RE +  +     S     ++P +           +  +        +A  ++ +R   
Sbjct: 176 DRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPF 235

Query: 171 -DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF-- 227
             P  I+Y+SGTTG PK +VH           L +  +       LHC  L     LF  
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAGG------TLLQHLKEHG----LHC-DLRPGDRLFYY 284

Query: 228 --------NALLAPLYAGATV 240
                   N L++ L +GAT+
Sbjct: 285 TTTGWMMWNWLVSGLLSGATL 305

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 67/237 (28%), Positives = 91/237 (38%), Gaps = 76/237 (32%)

Query: 157 DQSQAEKM-DGQRGEDP-----ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
           D+ +A  + D  R  +P     AL+V TSGTTG PKG             MLT A    S
Sbjct: 16  DERRAALLRDALRVGEPIDDDVALVVATSGTTGTPKGA------------MLTAAALTAS 63

Query: 211 AD----------QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYP 260
           AD          Q+L  LP HH+ GL   L+  + AG+                     P
Sbjct: 64  ADATHDRLGGPGQWLLALPAHHIAGL-QVLVRSVIAGSE--------------------P 102

Query: 261 VNGN-RAGEAITAFTGV------PTMYTRL--IQGYEAMDTELQAASASAAKQLRLMMCG 311
           V  +  AG   TA             YT L  +Q  +A+D     A+ +A  +L  ++ G
Sbjct: 103 VELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD---PAATAALAELDAVLVG 159

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV--GNPLPGVQV 366
               P PV+       G  ++  YGM+E               G V  G PL GV+V
Sbjct: 160 GGPAPAPVLDAAAAA-GINVVRTYGMSE------------TSGGCVYDGVPLDGVRV 203

Length = 358

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 57/239 (23%), Positives = 83/239 (34%), Gaps = 60/239 (25%)

Query: 149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQV---QMLT 203
           V     V         D   G D   ++Y+SGTTG+PKG+      +  D  +     L 
Sbjct: 136 VGYAEAVAGLPATPIADESLGTD---MLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQ 192

Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA-------GATVEFMPKF----SVRGIW 252
             W + S   +L   PL+H         AP  A       G TV  M  F     +  I 
Sbjct: 193 RLWGFRSDMVYLSPAPLYHS--------APQRAVMLVIRLGGTVIVMEHFDAEQYLALI- 243

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           + +              +T    VPTM++R+++  E +  +   +S   A          
Sbjct: 244 EEYG-------------VTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIH-------- 282

Query: 313 SALPLPV-----MQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGV 364
           +A P P      M  W    G  + E Y  TE     A  +    A   GTVG  + G 
Sbjct: 283 AAAPCPPQVKEQMIDW---WGPIIHEYYAATEGLGFTACDSEEWLAHP-GTVGRAMFGD 337

Length = 511

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 71/332 (21%), Positives = 128/332 (38%), Gaps = 38/332 (11%)

Query: 43  LCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
           L   +L+  +E           G   G  +G++ +    FV  V      G   VP++  
Sbjct: 61  LSYRELQRATESLARR--LTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTE 118

Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161
           +    L   +    IS V++  ++ E +    + +    ++I P       T   ++S  
Sbjct: 119 FRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDP------ATAGAEESGG 168

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCL 218
                  G    +++ TSGTTGKPKGV    +   ++   V +L +     +  +    +
Sbjct: 169 RPAVAAPGR---IVLLTSGTTGKPKGVPRAPQLRSAVGVWVTIL-DRTRLRTGSRISVAM 224

Query: 219 PLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           P+ H  G    L+  +  G TV     F       +       + +RA     AFT VP 
Sbjct: 225 PMFHGLG-LGMLMLTIALGGTVLTHRHFDAEAALAQ------ASLHRA----DAFTAVPV 273

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
           +  R+      ++   +  + +   QLR++M     L   + Q++    G  L   YG T
Sbjct: 274 VLARI------LELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGST 327

Query: 339 EF-VMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           E  + A++ P        TVG P+ G  V ++
Sbjct: 328 EVGIGALATPADLRDAPETVGKPVAGCPVRIL 359

Length = 516

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 175 IVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWE--YTSADQFLHCLPLHHV 223
           I+YTSGT+G PKGVV TH+++      V +  E +E   T  D +L  LPL H+
Sbjct: 225 IMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHI 278

Length = 660

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 25/123 (20%)

Query: 170 EDP---ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVH 224
           EDP     IVYTSGT+GKPKGV+ ++K++   V  L +   ++  +    L  LP+ H++
Sbjct: 301 EDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360

Query: 225 GLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
               A L+    G T+    K    FS + I+           N  G  +    GVP ++
Sbjct: 361 ERVIAYLS-FMLGGTINIWSKDINYFS-KDIY-----------NSKGNIL---AGVPKVF 404

Query: 281 TRL 283
            R+
Sbjct: 405 NRI 407

Length = 746

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQ----------- 213
           R  D   ++YT GTTG PKGV+   + I  +V +    +   E T  +            
Sbjct: 1   RSADDLYMLYTGGTTGMPKGVMWRQEDI-FRVLLGGPDFATGEPTLEELAKQVAAGGAGT 59

Query: 214 -FLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQ 253
            FL   PL H  G + AL A L+AG TV  +P  KF    +W+
Sbjct: 60  RFLPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWR 101

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
             D     D    +YTSGTTG PK  V  H            A+     D    CLPL+H
Sbjct: 97  SQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYH 156

Query: 223 ----VHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
               + G+  ALL     G+TV    KFS    W
Sbjct: 157 SAGGIMGVGQALL----HGSTVVIRKKFSASNFW 186

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 20/173 (11%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q   DP  + YTSGTT  PKGVV +H+            WE  +   +L  LP+ H +G 
Sbjct: 183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGW 242

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
                     G +V  M   +   I++          N     +T    VPT++  L++G
Sbjct: 243 TFTWGTAARGGTSV-CMRHVTAPEIYK----------NIEMHNVTHMCCVPTVFNILLKG 291

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
                  L  +  S    +   + G S  P  ++++ + + G +++  YG+TE
Sbjct: 292 -----NSLDLSPRSGPVHV---LTGGSPPPAALVKKVQRL-GFQVMHAYGLTE 335

Length = 579

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 171 DPALIVYTSGTTGKPKGVVHTH 192
            P  I+Y+SGTTG PK +VH H
Sbjct: 264 HPLWILYSSGTTGLPKCIVHGH 285

Length = 655

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 41/314 (13%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G+R+ +++    E    VL     G IAV    + P + +      +D +  L     + 
Sbjct: 66  GSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSK- 124

Query: 128 VLQNVASKSGAK-FSLIPPVP-NVSSETTVFDQS-QAEKMDGQRG---EDPALIVYTSGT 181
               +AS +  +    IP +  ++++ T   + S  A  + G      EDP  +++TSGT
Sbjct: 125 ----MASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGT 180

Query: 182 TGKPKGVVHTHKSIDAQVQMLTE---AW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TG+PK V+  +++  A   +L +    W  +   +     LP  H+ GL+  L   ++ G
Sbjct: 181 TGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGG 240

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
             V         G          +  N           VPT+ ++L+   ++ +  + + 
Sbjct: 241 LCVT--------GGENTTSLLEILTTNAVATTCL----VPTLLSKLVSELKSANATVPS- 287

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-----FVMAISNPLRGAR 352
                  LRL+  G S      ++  E  TG R  + YG++E       +   +      
Sbjct: 288 -------LRLVGYGGSRAIAADVRFIEA-TGVRTAQVYGLSETGCTALCLPTDDGSIVKI 339

Query: 353 KAGTVGNPLPGVQV 366
           +AG VG P PGV V
Sbjct: 340 EAGAVGRPYPGVDV 353

Length = 540

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 170 EDPALIVYTSGTTGKPKGVVHT 191
           EDP  ++YTSG+TGKPKGV+HT
Sbjct: 275 EDPLFLLYTSGSTGKPKGVLHT 296

Length = 666

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
             AL+  TSGTT  PK V+H   ++    + +  A+ Y      L  LP   V G F+ L
Sbjct: 182 AGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG-FSTL 240

Query: 231 LAPLYAGATVEFMPKF 246
           L  L  GA +   P F
Sbjct: 241 LGALAGGAPLVCEPVF 256

Length = 540

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 16/21 (76%), Positives = 17/21 (80%)

Query: 169 GEDPALIVYTSGTTGKPKGVV 189
             DP  I+YTSGTTGKPKGVV
Sbjct: 219 STDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 31/105 (29%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM----------LTEAWEYTSADQFLHCLP 219
           +DP    +TSGTTG+PK  V TH       QM          L      T  D  L   P
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTHG------QMAFVITNHLADLMPG--TTEQDASLVVAP 214

Query: 220 LHH---VHGLFNALLAPLYAGATVEFMP--KFSVRGIWQ---RWR 256
           L H   +H L       +  GA    +P  +F    +W    R R
Sbjct: 215 LSHGAGIHQLCQ-----VARGAATVLLPSERFDPAEVWALVERHR 254

Length = 528

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 71/318 (22%), Positives = 113/318 (35%), Gaps = 43/318 (13%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L  G    +GI+ +    FV  +L     G   + L  S+    L  V+    +  V+  
Sbjct: 88  LPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYD 147

Query: 123 EDYREVL-QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
           E++   + + +A    A   +     +      V   + A +     G    +I+ TSGT
Sbjct: 148 EEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILLTSGT 207

Query: 182 TGKPKGVVH-------THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           TG PKG          T K+I  +     E      A       P+ H  G    +LA  
Sbjct: 208 TGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVA-------PMFHAWGFSQLVLAAS 260

Query: 235 YAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
            A   V    F P+ ++  I          + +RA    T    VP M+ R+      MD
Sbjct: 261 LACTIVTRRRFDPEATLDLI----------DRHRA----TGLAVVPVMFDRI------MD 300

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM-AISNP--L 348
              +  +  + + LR      S +   V+  +    G  +   Y  TE  M A + P  L
Sbjct: 301 LPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADL 360

Query: 349 RGARKAGTVGNPLPGVQV 366
           R A    T G P  G ++
Sbjct: 361 RAA--PDTAGRPAEGTEI 376

Length = 537

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 14/18 (77%), Positives = 17/18 (94%)

Query: 171 DPALIVYTSGTTGKPKGV 188
           +P+ I+YTSGTTGKPKGV
Sbjct: 234 EPSYILYTSGTTGKPKGV 251

Length = 629

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 37/214 (17%)

Query: 171 DPALIVYTSGTTGKPKGV--------VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
           +P+ I+YTSGTTGKPKGV        V    S+ A   +      ++++D       +  
Sbjct: 233 EPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD-------VGW 285

Query: 223 VHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
           V G    + APL AGA     E +P     G+W    E Y V         +A T +   
Sbjct: 286 VVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVR-----TMFSAPTAI--- 337

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
             R+++  +A    L+    S+   L  +      L  P         G  +++ Y  TE
Sbjct: 338 --RVLKKQDA--AWLRKHDLSS---LHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTE 390

Query: 340 F---VMAISNPLR-GARKAGTVGNPLPGVQVSMI 369
               V+AI   L     K G+ G P+ G  + ++
Sbjct: 391 TGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVL 424

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSI----DAQVQMLTEAWE-YTSADQFLHCLPLH 221
           ++  D   I+YTSGTTG PKGV+ +++SI       +++L  A    T  D +L  LPL 
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279

Query: 222 HV 223
           H+
Sbjct: 280 HI 281

Length = 666

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHG 225
           YTSGTT  PKGVV  H+   A +  L+ A  W       +L  LP+ H +G
Sbjct: 202 YTSGTTASPKGVVLHHRG--AYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250

Length = 567

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 33/178 (18%)

Query: 173 ALIVYTSGTTGKPKGVVHT--HKSIDAQ----VQMLTEAWEYTSADQFLHCLPLHHVH-- 224
           A+++Y+SGTTG PKG+      + +DA     V +    ++ + +D +    P++H    
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL 210

Query: 225 ---GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
               + +AL      G TV    +F  +       E Y          IT    VPTM+ 
Sbjct: 211 RWCSMVHAL------GGTVVLAKRFDAQATL-GHVERY---------RITVTQMVPTMFV 254

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
           RL++    +D +++  +      LR ++  ++  P+ V        G  + E Y  TE
Sbjct: 255 RLLK----LDADVR--TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTE 306

Length = 501

>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCL 218
            + +             TSG+TG PK V H+  ++ ++ Q + +          + + C+
Sbjct: 86  VDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCV 145

Query: 219 PLHHVHG-LFNALLAPLYAGATV 240
           P HH++G LF+ LL P   G   
Sbjct: 146 PAHHLYGFLFSCLL-PSRRGLEA 167

This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.97
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.91
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.88
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.83
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.8
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.78
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.53
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.51
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.14
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.11
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.15
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.46
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	94.02
PLN02247	606	indole-3-acetic acid-amido synthetase	91.87
PLN02620	612	indole-3-acetic acid-amido synthetase	90.67
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	85.59
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	85.37

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.4e-49  Score=383.20  Aligned_cols=337  Identities=27%  Similarity=0.414  Sum_probs=277.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCce--eeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +++.+.+.+++..+|+++|+++.+..  +||+||.++++++|..|++.                 |+++||+|+|+++|+
T Consensus        11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------~v~~gdrVail~~N~   73 (534)
T COG0318          11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQAL-----------------GVKPGDRVAILLPNS   73 (534)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCC
Confidence            47889999999999999999998777  99999999999999999995                 899999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCC-CCC---CCcc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP-NVS---SETT  154 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~  154 (372)
                      +++++++|||+++|++++|++|.+...++.++++.++++.+++++...+.................... ...   ....
T Consensus        74 ~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (534)
T COG0318          74 PEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEA  153 (534)
T ss_pred             HHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHH
Confidence            999999999999999999999999999999999999999999998865655555443311111111111 000   0011


Q ss_pred             cccccccc--cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc--cCCCCeEEEecCchhHHHHHHHH
Q 017382          155 VFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       155 ~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                      ........  ......++++++|+|||||||.||||++||+++..+.......+.  ++..|++++++|++|.+|+...+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~  233 (534)
T COG0318         154 LAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGL  233 (534)
T ss_pred             HhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHH
Confidence            11110001  111156899999999999999999999999999999999988888  89999999999999999998777


Q ss_pred             HHHHHcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhcc-CceE
Q 017382          231 LAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRL  307 (372)
Q Consensus       231 ~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~-~lr~  307 (372)
                      +.+++.|+++++.+  .|+++.++..          +.++++|++.++|+++..+++....        ...+++ ++|.
T Consensus       234 ~~~~~~G~~~v~~~~~~f~~~~~~~~----------i~~~~~t~~~~vPt~~~~ll~~~~~--------~~~~~~~~lr~  295 (534)
T COG0318         234 LAPLLGGGTLVLLSPEPFDPEEVLWL----------IEKYKVTVLSGVPTFLRELLDNPEK--------DDDDLSSSLRL  295 (534)
T ss_pred             HHHHHcCCEEEeCCCCCcCHHHHHHH----------HHHhcceEEecchHHHHHHHhCCcc--------CccccccceEE
Confidence            77799999999998  5999999998          6778899999999999999887432        222344 4999


Q ss_pred             EEecCCCCCHHHHHHHHHHhC-CccccccccccccccccCCCCCC--CCCCcccccCCCceEEEeecC
Q 017382          308 MMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~~--~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.||++++++++++|++.|+ ..++++||+||++.+++......  .+.+++|+|+||++++|+|.|
T Consensus       296 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~  363 (534)
T COG0318         296 VLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPD  363 (534)
T ss_pred             EEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCC
Confidence            999999999999999999997 57999999999987665444433  577888999999999999965

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=3.8e-49  Score=372.01  Aligned_cols=329  Identities=23%  Similarity=0.295  Sum_probs=264.1

Q ss_pred             HHHhCC-cCCCceEEEeCC-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            7 AYKKGS-MARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         7 l~~~a~-~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +.++.. ..+|+.|+++++     +++||+||.+.+.++|+.|++.                .|+ +||+|++++|+.+|
T Consensus        15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~----------------~gv-kGDrV~iymp~~pe   77 (528)
T COG0365          15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDL----------------GGV-KGDRVAIYMPNSPE   77 (528)
T ss_pred             hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHh----------------CCC-CCCEEEEEcCCCHH
Confidence            555554 347899999853     6799999999999999999874                478 99999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHh-----hcCCcccccCCCCCCCCCccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS-----KSGAKFSLIPPVPNVSSETTV  155 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  155 (372)
                      .+++++||+++|++.+|+.+.++++.+...+++++++++|+++...+..+....     ......+++.... .......
T Consensus        78 ~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-~~~~~~~  156 (528)
T COG0365          78 AVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-LWYDEAV  156 (528)
T ss_pred             HHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-ccHHHHh
Confidence            999999999999999999999999999999999999999998865443222110     0000011111111 0000001


Q ss_pred             ccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH-hhcccCCCCeEEEecCchhHHHHHHHHHHHH
Q 017382          156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPL  234 (372)
Q Consensus       156 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l  234 (372)
                      ..............+|+++|+|||||||+||||+++|.+++....... ..+.+.++|++++..++.|+.|.+..++.+|
T Consensus       157 ~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL  236 (528)
T COG0365         157 EKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPL  236 (528)
T ss_pred             hccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHH
Confidence            111111123336789999999999999999999999998777666555 4678889999999999999999999999999


Q ss_pred             HcCceEEEcCC--C-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          235 YAGATVEFMPK--F-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       235 ~~G~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      .+|++.++.+.  + +++.+++.          ++++++|.+++.|+.+++|++...        ..++++++||.+.++
T Consensus       237 ~~Gat~~~~eg~p~~~~~~~~~~----------ie~~~vt~~~tsPT~~R~l~~~g~--------~~~~dlssLr~~~Sa  298 (528)
T COG0365         237 ASGATTVLYDGRPFYSPERLWEA----------LEKYKVTIFGTSPTFLRRLMKLGL--------GEPYDLSSLRVLGSA  298 (528)
T ss_pred             hcCCeEEEeCCCCCCCHHHHHHH----------HHHhCCceEeeCHHHHHHHHhcCC--------cccccchhheeeecc
Confidence            99999999864  2 48899998          889999999999999999988621        456899999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      |||+++++++++.+.+|+++.+.||+||++++...+.. ..++++.|+|+||+++.|+|+|
T Consensus       299 GEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~  358 (528)
T COG0365         299 GEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDE  358 (528)
T ss_pred             CCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCCceeEEECCC
Confidence            99999999999999999999999999999965554433 4455666999999999999975

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=6.1e-48  Score=368.65  Aligned_cols=340  Identities=24%  Similarity=0.332  Sum_probs=267.7

Q ss_pred             HHHHHHHHhCCcCCCceEEEe----CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            2 EVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++...+.++++.+|+..|+..    ..+.+||+|+.+++..+|++|++                 +|+..||+|+|++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-----------------lg~~~gdrvai~a~n   79 (613)
T COG1022          17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLS-----------------LGIPAGDRVAIFAAN   79 (613)
T ss_pred             cHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEEeCC
Confidence            467889999999999889984    46899999999999999999999                 589779999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc-hHHHHHHHHhhcCCc---ccccC---C-----
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREVLQNVASKSGAK---FSLIP---P-----  145 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~---~~~~~---~-----  145 (372)
                      +++|+++.+|++.+|++.||++++.+++++.+++++++++++|++.. ..+.+.......+..   .....   .     
T Consensus        80 r~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (613)
T COG1022          80 RPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAK  159 (613)
T ss_pred             CHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchh
Confidence            99999999999999999999999999999999999999999999974 444444443322110   00000   0     


Q ss_pred             ---CCCCCC--Ccc--cccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc-cCCCCeEEEe
Q 017382          146 ---VPNVSS--ETT--VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHC  217 (372)
Q Consensus       146 ---~~~~~~--~~~--~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~  217 (372)
                         ......  ...  ..............++|+|.|+|||||||.||||++||+|+++++.......+ ++++|+.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~Lsf  239 (613)
T COG1022         160 ALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSF  239 (613)
T ss_pred             hccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEe
Confidence               000000  000  00000111123567899999999999999999999999999999999999997 9999999999


Q ss_pred             cCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh----hccHH
Q 017382          218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE----AMDTE  293 (372)
Q Consensus       218 ~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~~~  293 (372)
                      +|++|++.........++.|++..  ...++..+++.          ++.++||.+.++|.+|+.+.+...    +.+..
T Consensus       240 LPlaHi~Er~~~~~~~~~~g~~~~--~~~~~~~~~~d----------l~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~  307 (613)
T COG1022         240 LPLAHIFERAFEGGLALYGGVTVL--FKEDPRTLLED----------LKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV  307 (613)
T ss_pred             CcHHHHHHHHHHHHHHhhcceEEE--ecCCHHHHHHH----------HHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence            999999999643333344444444  45688999999          788999999999999998876421    11100


Q ss_pred             ------------------------------------HHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCcccccccc
Q 017382          294 ------------------------------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM  337 (372)
Q Consensus       294 ------------------------------------~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~  337 (372)
                                                          +....+....++|++++||+++++++...|+.. |+++.++||+
T Consensus       308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGl  386 (613)
T COG1022         308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGL  386 (613)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecc
Confidence                                                111223344799999999999999999988765 9999999999


Q ss_pred             ccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          338 TEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       338 tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      ||++++++.......+.+++|+|+|++|+||+|.
T Consensus       387 TEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~  420 (613)
T COG1022         387 TETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADD  420 (613)
T ss_pred             cccccceEEccccCcccCCcCCcCCCceEEEccC
Confidence            9999888877777889999999999999999984

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-48  Score=385.98  Aligned_cols=343  Identities=17%  Similarity=0.260  Sum_probs=266.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEeC-----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCC--------
Q 017382            2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--------   68 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~g--------   68 (372)
                      |+.+.|.++++++|+++|++..     .+++||+|+.++++++|++|.+..              .+|+++|        
T Consensus        62 ~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~--------------~~Gv~~g~~~~~~~~  127 (746)
T PTZ00342         62 HIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYE--------------GKGIPEKKYNEEQNN  127 (746)
T ss_pred             hHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHh--------------hcCCCcCcccccccc
Confidence            6889999999999999999862     268999999999999999999610              0288888        


Q ss_pred             ---CEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--ccccc
Q 017382           69 ---ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLI  143 (372)
Q Consensus        69 ---d~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~  143 (372)
                         |+|+|+++|++||+++++||+++|++++|++++++++++.+++++++++++|++.+..+.+......++.  .++.+
T Consensus       128 g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~  207 (746)
T PTZ00342        128 GKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIIL  207 (746)
T ss_pred             ccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEE
Confidence               9999999999999999999999999999999999999999999999999999988777766655444331  22222


Q ss_pred             CCCCCC------------------CCC--c---------------------cc--------------cc----------c
Q 017382          144 PPVPNV------------------SSE--T---------------------TV--------------FD----------Q  158 (372)
Q Consensus       144 ~~~~~~------------------~~~--~---------------------~~--------------~~----------~  158 (372)
                      +.....                  ...  .                     ..              ..          .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  287 (746)
T PTZ00342        208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDD  287 (746)
T ss_pred             CCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHH
Confidence            221000                  000  0                     00              00          0


Q ss_pred             -----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc--ccCCCCeEEEecCchhHHHHHHHHH
Q 017382          159 -----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALL  231 (372)
Q Consensus       159 -----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~~~~~~~~  231 (372)
                           ..........++|+++|+|||||||.||||++||+|++..+.......  .....|++++++|++|++++.. .+
T Consensus       288 ~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~  366 (746)
T PTZ00342        288 MTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AY  366 (746)
T ss_pred             HHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HH
Confidence                 000012234578999999999999999999999999998877654432  2235689999999999999964 66


Q ss_pred             HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhh----ccH---------------
Q 017382          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA----MDT---------------  292 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~---------------  292 (372)
                      .+++.|+++++.+. ++..+++.          ++++++|+++++|.++.++.+....    .+.               
T Consensus       367 ~~l~~G~~i~~~~~-~~~~l~~d----------i~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~  435 (746)
T PTZ00342        367 LSFMLGGTINIWSK-DINYFSKD----------IYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS  435 (746)
T ss_pred             HHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            77999999998875 88888888          7889999999999999999763211    000               


Q ss_pred             ---------------HHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcc
Q 017382          293 ---------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV  357 (372)
Q Consensus       293 ---------------~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~sv  357 (372)
                                     -.........+++|.+++||+++++++.+.|...+|++++++||+||+++..+.......+.+++
T Consensus       436 ~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsv  515 (746)
T PTZ00342        436 NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESI  515 (746)
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccc
Confidence                           00111122347999999999999999999999989999999999999976555444445678999


Q ss_pred             cccC-CCceEEEee
Q 017382          358 GNPL-PGVQVSMIL  370 (372)
Q Consensus       358 G~p~-~g~~i~Ivd  370 (372)
                      |+|+ ||+++||+|
T Consensus       516 G~p~~pg~e~ki~d  529 (746)
T PTZ00342        516 GGPISPNTKYKVRT  529 (746)
T ss_pred             cCcCCCcEEEEEec
Confidence            9998 999999997

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.1e-47  Score=381.26  Aligned_cols=341  Identities=24%  Similarity=0.301  Sum_probs=269.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEe----CC-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRA----DQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~----~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      |+.+.+.++++++|+++|+..    ++     +.+||+||.++++++|++|++                 +|+++||+|+
T Consensus        45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va  107 (651)
T PLN02736         45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-----------------HGIPKGACVG  107 (651)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEE
Confidence            678899999999999999942    21     469999999999999999999                 5999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC-cccc-cCCCCC-C
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSL-IPPVPN-V  149 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~  149 (372)
                      ++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+. +.++ +..... .
T Consensus       108 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  187 (651)
T PLN02736        108 LYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPL  187 (651)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhh
Confidence            999999999999999999999999999999999999999999999999998776665554433321 1111 111000 0


Q ss_pred             ---CCC-----cccccc-----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEE
Q 017382          150 ---SSE-----TTVFDQ-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH  216 (372)
Q Consensus       150 ---~~~-----~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~  216 (372)
                         ...     ....+.     ..........++++++|+|||||||.||||++||+++..++......+++.++|++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~  267 (651)
T PLN02736        188 PSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHIS  267 (651)
T ss_pred             hhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEE
Confidence               000     000000     0001122346789999999999999999999999999999888888888999999999


Q ss_pred             ecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccH----
Q 017382          217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT----  292 (372)
Q Consensus       217 ~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~----  292 (372)
                      .+|++|+++++ .++.++..|+++++.+. ++..+++.          ++++++|+++++|+++..+.+.....-.    
T Consensus       268 ~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  335 (651)
T PLN02736        268 YLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDD----------LAALRPTIFCSVPRLYNRIYDGITNAVKESGG  335 (651)
T ss_pred             eCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEecchHHHHHHHHHHHHHHhcccH
Confidence            99999999997 57788999999998764 77888888          7889999999999999988764311000    


Q ss_pred             ------------------------------HHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccc
Q 017382          293 ------------------------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM  342 (372)
Q Consensus       293 ------------------------------~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  342 (372)
                                                    ..........+++|.+++||+++++++.+.+.+.+|++++++||+||+++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~  415 (651)
T PLN02736        336 LKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSC  415 (651)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhch
Confidence                                          00001111125899999999999999999999889999999999999986


Q ss_pred             cccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          343 AISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       343 ~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      .++.......+.+++|+|+||+++||+|.
T Consensus       416 ~~~~~~~~~~~~~~vG~p~pg~~v~i~d~  444 (651)
T PLN02736        416 VISGMDEGDNLSGHVGSPNPACEVKLVDV  444 (651)
T ss_pred             heeccCCCCCCCCccCCccCceEEEEEEc
Confidence            66544444567789999999999999983

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-48  Score=343.07  Aligned_cols=336  Identities=21%  Similarity=0.256  Sum_probs=278.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      |+-+.++..+++.||+.|+++  ++.++||+||.+.++.+|+.|.+                 +|+++||+|++..||+.
T Consensus        51 Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-----------------lGL~kGDrVgvwgpN~~  113 (596)
T KOG1177|consen   51 TIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-----------------LGLKKGDRVGVWGPNSY  113 (596)
T ss_pred             cHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-----------------hcCCCCCEEEEecCChH
Confidence            577889999999999999997  46789999999999999999999                 69999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch-----HHHHHHHHhhcCCcc---c---ccC----
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGAKF---S---LIP----  144 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~---~---~~~----  144 (372)
                      +|+...+||.++|.+.+++||.+...++++.|++.+++++|+.+.+     .+.+.++.+++....   +   .++    
T Consensus       114 ~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lth  193 (596)
T KOG1177|consen  114 EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTH  193 (596)
T ss_pred             HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceE
Confidence            9999999999999999999999999999999999999999998743     445555544322110   0   000    


Q ss_pred             ----C-CCCCCC---Ccccc-cccc------cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccC
Q 017382          145 ----P-VPNVSS---ETTVF-DQSQ------AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT  209 (372)
Q Consensus       145 ----~-~~~~~~---~~~~~-~~~~------~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~  209 (372)
                          . ......   ..+.. ....      ........|||.+.|.|||||||.|||+.+||.|++++........++.
T Consensus       194 vi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~  273 (596)
T KOG1177|consen  194 VILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYN  273 (596)
T ss_pred             EEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcC
Confidence                0 000000   00000 0000      0113356789999999999999999999999999999999999999999


Q ss_pred             CCCeEEEecCchhHHHHHHHHHHHHHcCceEEEc-CCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh
Q 017382          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (372)
Q Consensus       210 ~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  288 (372)
                      ..+++++..|++|.+|.....++++..|++++++ +.|++.+.++.          |+++++|.++++|+++..+++.  
T Consensus       274 e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa----------i~~ekcT~l~gtPtM~~Dlln~--  341 (596)
T KOG1177|consen  274 EKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA----------ISNEKCTTLYGTPTMFVDLLNI--  341 (596)
T ss_pred             cceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH----------HHhhceEEEecChHHHHHHhcc--
Confidence            9899999999999999888999999999999994 67999999999          8899999999999999999976  


Q ss_pred             hccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCC-ccccccccccccccccCC---CCCCCCCCcccccCCCc
Q 017382          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNP---LRGARKAGTVGNPLPGV  364 (372)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~---~~~~~~~~svG~p~~g~  364 (372)
                            +....++++++|-.+.||+++++++++.+....+. .+...||+||++.+.+..   .+.+.+..+||+.+++.
T Consensus       342 ------~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~  415 (596)
T KOG1177|consen  342 ------PQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHY  415 (596)
T ss_pred             ------hhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccc
Confidence                  45567799999999999999999999999887654 466799999999665532   22346678999999999


Q ss_pred             eEEEeecC
Q 017382          365 QVSMILLL  372 (372)
Q Consensus       365 ~i~Ivd~d  372 (372)
                      |.+|+|.+
T Consensus       416 Ea~iv~~~  423 (596)
T KOG1177|consen  416 EAAIVDKD  423 (596)
T ss_pred             ccccccCC
Confidence            99999864

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-47  Score=359.69  Aligned_cols=332  Identities=27%  Similarity=0.374  Sum_probs=275.2

Q ss_pred             HHhCCcCCCc-eEEEeC---CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH
Q 017382            8 YKKGSMARDS-VAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA   83 (372)
Q Consensus         8 ~~~a~~~~~~-~al~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~   83 (372)
                      .+.+..++++ +.+++.   ++.+||+|+++++.++|..|.+.+               .|+++||+|++++||++++++
T Consensus        23 ~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~---------------~~i~~gDvV~i~~pNs~~~~~   87 (537)
T KOG1176|consen   23 GRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELG---------------LGIKKGDVVGILAPNTPEFVE   87 (537)
T ss_pred             cccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcC---------------CCCCCCCEEEEEcCCCHHHHH
Confidence            3344344555 666654   499999999999999999999853               258999999999999999999


Q ss_pred             HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcc-------cc
Q 017382           84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-------VF  156 (372)
Q Consensus        84 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  156 (372)
                      +++||..+|+++.++||.+.+.++.+.++.++++++|++.+..+.+.+....+...++.+...........       ..
T Consensus        88 ~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~  167 (537)
T KOG1176|consen   88 LALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFE  167 (537)
T ss_pred             HHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchh
Confidence            99999999999999999999999999999999999999999999988877665544444433211100000       10


Q ss_pred             cccccc--c-ccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 017382          157 DQSQAE--K-MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (372)
Q Consensus       157 ~~~~~~--~-~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~  233 (372)
                      ...+..  . ......+|++.|.|||||||.||||++||++++.+.......+.+...|++++.+|++|..|++..+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~  247 (537)
T KOG1176|consen  168 DLMPEGLPDGIRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSL  247 (537)
T ss_pred             hccccCCCcccccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHH
Confidence            000000  0 3344569999999999999999999999999999988888878888899999999999999998766668


Q ss_pred             HHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      +..|+++++.+.|++..+++.          +++|++|+++++|+++..+++..        ...++++++++.+.+||+
T Consensus       248 ~~~~~~ii~~~~f~~~~~~~~----------i~kykvt~~~~vP~~~~~l~~~p--------~~~~~~l~sl~~v~~gga  309 (537)
T KOG1176|consen  248 LAGGTTIICLRKFDAELFLDL----------IEKYKVTHLFLVPPVLNMLAKSP--------IVKKYDLSSLRSVLSGGA  309 (537)
T ss_pred             HhCCceEEECCCCCHHHHHHH----------HHHhCEEEEEcChHHHHHHhcCC--------ccCcccCCccEEEEecCC
Confidence            888899999999999999999          89999999999999999998862        345679999999999999


Q ss_pred             CCCHHHHHHHHHHhC-CccccccccccccccccCCCCC-CCCCCcccccCCCceEEEeecC
Q 017382          314 ALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~-~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++++.+++.+.++ ..+.++||+||+++.++.+... +.+++++|++++|++++|.+++
T Consensus       310 ~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~  370 (537)
T KOG1176|consen  310 PLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDET  370 (537)
T ss_pred             CCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeCCC
Confidence            999999999999998 8999999999999665543333 3589999999999999988753

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-47  Score=372.47  Aligned_cols=336  Identities=20%  Similarity=0.243  Sum_probs=274.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.+.++++.+||++|++++++++||+||.++++++|+.|.+                 .|+++||+|+++++|++++
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~-----------------~gi~~gd~V~i~~~n~~~~  112 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLA-----------------LGVRAGDGVAVLARNHRGF  112 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHHH
Confidence            56788999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc-ccccCCCC------CCCCCcc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVP------NVSSETT  154 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~  154 (372)
                      +++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....... .+......      .......
T Consensus       113 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (549)
T PRK07788        113 VLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDD  192 (549)
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHH
Confidence            9999999999999999999999999999999999999999988776665543222211 11100000      0000000


Q ss_pred             cccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHH
Q 017382          155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL  234 (372)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l  234 (372)
                      ...... ........++.++++|||||||.||+|.++|+++...+......+++..+|+++...|++|..++. .++.++
T Consensus       193 ~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l  270 (549)
T PRK07788        193 LIAGSS-TAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAM  270 (549)
T ss_pred             HhcCCC-CCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHH
Confidence            000000 111123457889999999999999999999999999888888888889999999999999999986 577789


Q ss_pred             HcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCC
Q 017382          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (372)
Q Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~  314 (372)
                      ..|+++++.+.+++..+++.          ++++++|++.++|+++..+++....      .....+++++|.+++||++
T Consensus       271 ~~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~gG~~  334 (549)
T PRK07788        271 ALGSTVVLRRRFDPEATLED----------IAKHKATALVVVPVMLSRILDLGPE------VLAKYDTSSLKIIFVSGSA  334 (549)
T ss_pred             HhCCEEEECCCCCHHHHHHH----------HHHhCCcEEEEHHHHHHHHHhCccc------ccCCCCCCceeEEEEeCCC
Confidence            99999999999999999998          7889999999999999999875321      1133467899999999999


Q ss_pred             CCHHHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCCceEEEeecC
Q 017382          315 LPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++.+.|.+.|+..++|.||+||++.+...... ....++++|+|++|++++|+|++
T Consensus       335 l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~  393 (549)
T PRK07788        335 LSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDEN  393 (549)
T ss_pred             CCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCC
Confidence            99999999999999999999999998865543322 23456899999999999999864

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=9.7e-47  Score=376.10  Aligned_cols=339  Identities=20%  Similarity=0.258  Sum_probs=255.5

Q ss_pred             HHHHHHHHhCCcCCCceEEEe----CC-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRA----DQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~----~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      |+++.+.++++++||++|+..    ++     +++||+||.++++++|++|.+                 +|+++||+|+
T Consensus        46 t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~Gd~Va  108 (666)
T PLN02614         46 SCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-----------------VGVKDEAKCG  108 (666)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            788999999999999999973    11     358999999999999999999                 5999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--C-cccccCCCCC-
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--A-KFSLIPPVPN-  148 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-  148 (372)
                      ++++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++++....+........  . .++.+..... 
T Consensus       109 i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~  188 (666)
T PLN02614        109 IYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSRE  188 (666)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChH
Confidence            99999999999999999999999999999999999999999999999998765444332211110  1 1111111000 


Q ss_pred             C------CC--Ccccccc----c-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc-----ccCC
Q 017382          149 V------SS--ETTVFDQ----S-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTS  210 (372)
Q Consensus       149 ~------~~--~~~~~~~----~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~  210 (372)
                      .      ..  .....+.    . .........++|+++|+|||||||.||||++||+++...+......+     .+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~  268 (666)
T PLN02614        189 QKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTV  268 (666)
T ss_pred             HhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCC
Confidence            0      00  0000000    0 00111234578999999999999999999999999998877655443     5678


Q ss_pred             CCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhc
Q 017382          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (372)
Q Consensus       211 ~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  290 (372)
                      +|++++++|++|+++... .+..+..|+++++.+ +++..+++.          +++++||+++++|+++..+.+.....
T Consensus       269 ~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~  336 (666)
T PLN02614        269 KDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIED----------LGELKPTIFCAVPRVLDRVYSGLQKK  336 (666)
T ss_pred             CcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCeEEEecHHHHHHHHHHHHHH
Confidence            999999999999999864 556688999998875 588889888          78899999999999999887643210


Q ss_pred             ----cH---------------------------------HHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHh-CCccc
Q 017382          291 ----DT---------------------------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLL  332 (372)
Q Consensus       291 ----~~---------------------------------~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~  332 (372)
                          ..                                 ..........+++|.+++||+++++++ +.|.+.+ +++++
T Consensus       337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~  415 (666)
T PLN02614        337 LSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVL  415 (666)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEE
Confidence                00                                 000000111278999999999999875 5666666 58999


Q ss_pred             cccccccccccccCCC-CCCCCCCcccccCCCceEEEee
Q 017382          333 ERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       333 ~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      ++||+||++++.+... ....+.+++|+|+||+++||+|
T Consensus       416 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d  454 (666)
T PLN02614        416 QGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLES  454 (666)
T ss_pred             eeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEee
Confidence            9999999876544322 2224578999999999999998

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.2e-46  Score=373.61  Aligned_cols=339  Identities=22%  Similarity=0.277  Sum_probs=256.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEe----C-----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRA----D-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~----~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      |+++.|.++++++|+++|+..    +     .+++||+||.++++++|++|.+                 +|+++||+|+
T Consensus        44 t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va  106 (660)
T PLN02861         44 SPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-----------------RGVNPGDRCG  106 (660)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            678899999999999999963    1     1479999999999999999999                 5999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--C-cccccCCCCCC
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--A-KFSLIPPVPNV  149 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~  149 (372)
                      |+++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+........  . .++.+......
T Consensus       107 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  186 (660)
T PLN02861        107 IYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSE  186 (660)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChh
Confidence            99999999999999999999999999999999999999999999999998766554443322211  1 11111111000


Q ss_pred             -----C--CC--ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc-----cCCC
Q 017382          150 -----S--SE--TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-----YTSA  211 (372)
Q Consensus       150 -----~--~~--~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~  211 (372)
                           .  ..  ..+.+    .......+...++|+++|+|||||||.||||++||++++..+......+.     +..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~  266 (660)
T PLN02861        187 QKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE  266 (660)
T ss_pred             hhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCC
Confidence                 0  00  00000    00001122345789999999999999999999999999988776655443     4678


Q ss_pred             CeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhcc
Q 017382          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (372)
Q Consensus       212 d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  291 (372)
                      |++++++|++|++++.. .+.+++.|+++++.+ +++..+++.          ++++++|+++++|+++..+.+.....-
T Consensus       267 d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~~  334 (660)
T PLN02861        267 DSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMED----------VQALKPTIFCGVPRVYDRIYTGIMQKI  334 (660)
T ss_pred             CEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCcEEeechHHHHHHHHHHHHHH
Confidence            99999999999999865 455799999998874 688888888          888999999999999998875211000


Q ss_pred             H-----------------------------HHHHhh--------hhhccCceEEEecCCCCCHHHHHHHHHHhCC-cccc
Q 017382          292 T-----------------------------ELQAAS--------ASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLE  333 (372)
Q Consensus       292 ~-----------------------------~~~~~~--------~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~-~l~~  333 (372)
                      .                             ..+...        ....+++|.+++||+++++++. .|.+.++. .+++
T Consensus       335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~  413 (660)
T PLN02861        335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQ  413 (660)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeE
Confidence            0                             000011        1112689999999999999975 46666764 7999


Q ss_pred             ccccccccccccCC-CCCCCCCCcccccCCCceEEEee
Q 017382          334 RYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       334 ~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      +||+||+++.++.. .....+.+++|+|+||+++||+|
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d  451 (660)
T PLN02861        414 GYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLES  451 (660)
T ss_pred             ecchhhhhhceeecccccCCCCCCccCccCceEEEEEE
Confidence            99999987655432 22223568999999999999998

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=5.2e-47  Score=359.71  Aligned_cols=333  Identities=29%  Similarity=0.443  Sum_probs=257.8

Q ss_pred             HHHhCCcCCCceEEEe-CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHH
Q 017382            7 AYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (372)
Q Consensus         7 l~~~a~~~~~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~   85 (372)
                      |+++|+++||++|+++ .++++||+||.++++++|..|++                 +|+++||+|+++++|++++++++
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~-----------------~g~~~~~~V~i~~~n~~~~~~~~   63 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRK-----------------LGVKKGDRVAILLPNSIEFVVAF   63 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHH-----------------TTSSTTSEEEEEESSSHHHHHHH
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHH-----------------hCCCccccccccCCccceeeeee
Confidence            6789999999999999 99999999999999999999998                 59999999999999999999999


Q ss_pred             HHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEe----ccchHHHHHHHHhhcC--CcccccCCCCCCCCCccccccc
Q 017382           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS----TEDYREVLQNVASKSG--AKFSLIPPVPNVSSETTVFDQS  159 (372)
Q Consensus        86 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  159 (372)
                      +||+++|++++|++|.++.+++.+++++++++++|+    +......+........  .....+................
T Consensus        64 ~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (417)
T PF00501_consen   64 LACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASL  143 (417)
T ss_dssp             HHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999997    2222223333332211  1122222111111000000000


Q ss_pred             ccccccC-CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH--hhcccCCCCeEEEecCchhHHHHHHHHHHHHHc
Q 017382          160 QAEKMDG-QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA  236 (372)
Q Consensus       160 ~~~~~~~-~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~  236 (372)
                      ....... ..++++++++|||||||.||+|.++|+++++.+....  ..++++  |++++.+|++|..+++..++.++..
T Consensus       144 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~  221 (417)
T PF00501_consen  144 SDEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFS  221 (417)
T ss_dssp             CHCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccc
Confidence            0000000 0568999999999999999999999999999888764  222333  6999999999999996679999999


Q ss_pred             CceEEEcCCCch---hHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382          237 GATVEFMPKFSV---RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       237 G~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      |+++++.+....   +.+++.          ++++++|++.++|+++..+++.... .   ......+++++|.+++||+
T Consensus       222 G~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~~~-~---~~~~~~~l~~lr~v~~~G~  287 (417)
T PF00501_consen  222 GATLVLPSPFDLFDPESLLEL----------ISRYKPTILFAVPSMLEALLQSPEE-K---TKISKKDLSSLRTVISGGE  287 (417)
T ss_dssp             TSEEEEESSHHHHHHHHHHHH----------HHHHTESEEEEEHHHHHHHHHHHHT-T---HHGTTTTGTT-SEEEEESS
T ss_pred             cccccccccccccccccchhc----------ccccccccccccccccccccccccc-c---ccccccccccccccccccc
Confidence            999999997654   556677          7889999999999999999874211 0   0112347889999999999


Q ss_pred             CCCHHHHHHHHHHhCC-ccccccccccccccccCC--CCCCCCCCcccccCCCceEEEeecC
Q 017382          314 ALPLPVMQQWETITGH-RLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       314 ~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~--~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++++.+++++.++. ++++.||+||++.+++..  .....+.+++|+|+||++++|+|++
T Consensus       288 ~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~  349 (417)
T PF00501_consen  288 PLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPN  349 (417)
T ss_dssp             T-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTT
T ss_pred             cCChhhccccccccccccceecccccccceeeeccccccccccccccccccccccccccccc
Confidence            9999999999999987 999999999999887643  3334577899999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.9e-46  Score=368.12  Aligned_cols=338  Identities=20%  Similarity=0.280  Sum_probs=261.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEeC-----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      |+.+.|.++++++|+++|+++.     .+++||+||.++++++|+.|.+                 .|+++||+|+++++
T Consensus        40 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~Gv~~gd~Vai~~~  102 (614)
T PRK08180         40 RLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-----------------RGLSAERPLMILSG  102 (614)
T ss_pred             cHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEecC
Confidence            6788999999999999999864     2689999999999999999999                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCC-----HHHHHHHHhhCCceEEEeccc--hHHHHHHHHhhcCCcccccCCCCCC
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYP-----ESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPVPNV  149 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  149 (372)
                      |+++++++++||+++|++++|+++.++     .+++.+++++++++++|+++.  ....+..... .....+........
T Consensus       103 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~  181 (614)
T PRK08180        103 NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVEVVAVRGAVPG  181 (614)
T ss_pred             CCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCceEEEecCCCCC
Confidence            999999999999999999999999988     789999999999999999853  2222222111 11111111110000


Q ss_pred             ---CCCcccccccc----cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccC--CCCeEEEecCc
Q 017382          150 ---SSETTVFDQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT--SADQFLHCLPL  220 (372)
Q Consensus       150 ---~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl  220 (372)
                         ...........    ........++++++|+|||||||.||||++||+++..++......+...  ..+++++++|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl  261 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPW  261 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecch
Confidence               00000000000    0111234578999999999999999999999999998888777766653  56899999999


Q ss_pred             hhHHHHHHHHHHHHHcCceEEEcCC-Cchh---HHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHH
Q 017382          221 HHVHGLFNALLAPLYAGATVEFMPK-FSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (372)
Q Consensus       221 ~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~---~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~  296 (372)
                      +|.+++...++.+++.|+++++.+. +++.   .+++.          ++++++|+++++|+++..|++.+...    ..
T Consensus       262 ~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~----~~  327 (614)
T PRK08180        262 NHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRN----------LREISPTVYFNVPKGWEMLVPALERD----AA  327 (614)
T ss_pred             HHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHH----------HHHhCCcEEechHHHHHHHHHHHHhc----hh
Confidence            9999987778889999999999763 4544   44455          78899999999999999998754321    12


Q ss_pred             hhhhhccCceEEEecCCCCCHHHHHHHHHH----hC--CccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          297 ASASAAKQLRLMMCGSSALPLPVMQQWETI----TG--HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       297 ~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~----~~--~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      ....+++++|.+++||+++++++.+.|.+.    +|  +++++.||+||++.+++.......+.+++|+|+||+++||+|
T Consensus       328 ~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d  407 (614)
T PRK08180        328 LRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVP  407 (614)
T ss_pred             hhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEec
Confidence            234567999999999999999999999875    34  679999999999866553333345678999999999999998


Q ss_pred             c
Q 017382          371 L  371 (372)
Q Consensus       371 ~  371 (372)
                      .
T Consensus       408 ~  408 (614)
T PRK08180        408 V  408 (614)
T ss_pred             C
Confidence            5

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-46  Score=364.78  Aligned_cols=337  Identities=24%  Similarity=0.331  Sum_probs=278.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+++.|.++++.+|+++|+++.++++||+||.+++.++|+.|.+.                +|+++||+|+++++|+++
T Consensus        10 ~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~----------------~g~~~g~~V~i~~~~~~~   73 (546)
T PRK08314         10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQE----------------CGVRKGDRVLLYMQNSPQ   73 (546)
T ss_pred             CCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCChH
Confidence            4788999999999999999999999999999999999999999983                399999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCC-------CC---
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-------VS---  150 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---  150 (372)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++++..+.+.............+.....       ..   
T Consensus        74 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (546)
T PRK08314         74 FVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPA  153 (546)
T ss_pred             HHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccc
Confidence            99999999999999999999999999999999999999999988776665543322111111100000       00   


Q ss_pred             -----------------CCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCe
Q 017382          151 -----------------SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ  213 (372)
Q Consensus       151 -----------------~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~  213 (372)
                                       ..................++++++|+|||||||.||+|.++|++++.++......+.+..+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~  233 (546)
T PRK08314        154 WLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESV  233 (546)
T ss_pred             ccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCce
Confidence                             000000000011123345789999999999999999999999999999888888888999999


Q ss_pred             EEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHH
Q 017382          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE  293 (372)
Q Consensus       214 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  293 (372)
                      +++.+|++|..|++..++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...     
T Consensus       234 ~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~ll~~~~-----  298 (546)
T PRK08314        234 VLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----------IERYRVTHWTNIPTMVVDFLASPG-----  298 (546)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHH----------HHHhcCceecccHHHHHHHHhCCC-----
Confidence            99999999999998788899999999999999999999888          788999999999999998876421     


Q ss_pred             HHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       294 ~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                         ....+++++|.+++||++++++++++|.+.++.++++.||+||++.............+++|+|++|++++|+|+
T Consensus       299 ---~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~  373 (546)
T PRK08314        299 ---LAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDP  373 (546)
T ss_pred             ---ccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeC
Confidence               223467889999999999999999999999999999999999998765544333345688999999999999985

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=8.7e-46  Score=364.20  Aligned_cols=337  Identities=21%  Similarity=0.290  Sum_probs=268.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      |+.+.|.++++++|+++|++++++.+||+||.++++++|+.|.+                 +|+++||+|+++++|++++
T Consensus         8 ~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-----------------~Gv~~gd~V~v~~~n~~~~   70 (563)
T PLN02860          8 HICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLR-----------------LGLRNGDVVAIAALNSDLY   70 (563)
T ss_pred             HHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHHH
Confidence            68899999999999999999989999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHh-hcCC-c-ccccCCCC--------CCC
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS-KSGA-K-FSLIPPVP--------NVS  150 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~--------~~~  150 (372)
                      +++++||+++|++++|+++.++.+++.++++++++++++++++.......... .... . .+......        ...
T Consensus        71 ~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  150 (563)
T PLN02860         71 LEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFL  150 (563)
T ss_pred             HHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhcc
Confidence            99999999999999999999999999999999999999998765333332211 1110 1 11111000        000


Q ss_pred             CCcccccc--cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH
Q 017382          151 SETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (372)
Q Consensus       151 ~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~  228 (372)
                      ........  ..........++++++|+|||||||.||+|.++|+++..+.......+++.++|+++...|++|..++. 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-  229 (563)
T PLN02860        151 TTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-  229 (563)
T ss_pred             ccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHH-
Confidence            00000000  000111233568999999999999999999999999988777777778889999999999999999985 


Q ss_pred             HHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEE
Q 017382          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (372)
Q Consensus       229 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v  308 (372)
                      .++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+....      ......++++|.+
T Consensus       230 ~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~~  293 (563)
T PLN02860        230 SALAMLMVGACHVLLPKFDAKAALQA----------IKQHNVTSMITVPAMMADLISLTRK------SMTWKVFPSVRKI  293 (563)
T ss_pred             HHHHHHHcCceEEecCCCCHHHHHHH----------HHHhCCeeEEeChHHHHHHHHhhhh------hhccccccceeEE
Confidence            57888999999999999999999988          8899999999999999999875321      1122467899999


Q ss_pred             EecCCCCCHHHHHHHHHHh-CCccccccccccccccccCCC--C---------------------CCCCCCcccccCCCc
Q 017382          309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--R---------------------GARKAGTVGNPLPGV  364 (372)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~---------------------~~~~~~svG~p~~g~  364 (372)
                      ++||+++++++.+.|.+.| +.++++.||+||++..++...  .                     ......++|+|+||+
T Consensus       294 ~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~  373 (563)
T PLN02860        294 LNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV  373 (563)
T ss_pred             EeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc
Confidence            9999999999999999998 789999999999875443211  0                     011234799999999


Q ss_pred             eEEEeecC
Q 017382          365 QVSMILLL  372 (372)
Q Consensus       365 ~i~Ivd~d  372 (372)
                      +++|+|.+
T Consensus       374 ~v~i~~~~  381 (563)
T PLN02860        374 ELKIGLDE  381 (563)
T ss_pred             EEEEecCC
Confidence            99998754

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5.3e-46  Score=363.50  Aligned_cols=333  Identities=20%  Similarity=0.243  Sum_probs=268.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC-ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ++.+.|.+.++++|+++|+.++. +++||+||.++++++|+.|.+                    .+||+|+++++|+++
T Consensus        20 ~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~--------------------~~gd~Val~~~n~~e   79 (539)
T PRK06334         20 TVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK--------------------YPDQHIGIMMPASAG   79 (539)
T ss_pred             cHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh--------------------ccCCeEEEEcCCchH
Confidence            67889999999999999998765 799999999999999999976                    279999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhh---cCCcccccCCCCCC---CCCcc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK---SGAKFSLIPPVPNV---SSETT  154 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~  154 (372)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++.+..+.+.+....   ....++.+......   .....
T Consensus        80 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  159 (539)
T PRK06334         80 AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCR  159 (539)
T ss_pred             HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhh
Confidence            9999999999999999999999999999999999999999998776655543321   11111111110000   00000


Q ss_pred             cc---cccc-----cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHH
Q 017382          155 VF---DQSQ-----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL  226 (372)
Q Consensus       155 ~~---~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~  226 (372)
                      ..   ....     ........++++++|+|||||||.||+|++||+++..+.......++++.+|++++.+|++|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~  239 (539)
T PRK06334        160 IGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGF  239 (539)
T ss_pred             hhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhh
Confidence            00   0000     001123467899999999999999999999999999888887778888999999999999999998


Q ss_pred             HHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCc
Q 017382          227 FNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL  305 (372)
Q Consensus       227 ~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~l  305 (372)
                      ...++.++..|+++++.+ .+++..+++.          ++++++|++.++|+++..+++...        ....+++++
T Consensus       240 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l  301 (539)
T PRK06334        240 NSCTLFPLLSGVPVVFAYNPLYPKKIVEM----------IDEAKVTFLGSTPVFFDYILKTAK--------KQESCLPSL  301 (539)
T ss_pred             HHHHHHHHHcCCeEEEecCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHHhhh--------hcccccccc
Confidence            766788899999999875 4789999988          788999999999999999987521        223467899


Q ss_pred             eEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCCC-CCCCCCCcccccCCCceEEEeecC
Q 017382          306 RLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       306 r~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      |.+++||+++++++.+++.+.+ +..+++.||+||++.+++... ......+++|+|++|++++|+|.|
T Consensus       302 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~  370 (539)
T PRK06334        302 RFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEE  370 (539)
T ss_pred             cEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCC
Confidence            9999999999999999999988 689999999999986655332 223345789999999999999853

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.3e-45  Score=368.44  Aligned_cols=336  Identities=18%  Similarity=0.242  Sum_probs=261.7

Q ss_pred             HHHHHHhCC-cCCCceEEEeC------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            4 FKAAYKKGS-MARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         4 ~~~l~~~a~-~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      ++.+.+++. .+|+++|+++.      .+++||+||.+++.++|+.|++                 .|+++||+|+++++
T Consensus        91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i~~p  153 (666)
T PLN02654         91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-----------------VGVKKGDAVVIYLP  153 (666)
T ss_pred             HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            345556765 48999999873      3689999999999999999999                 59999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHH---------HHHHHHhhcC---C--c-cc
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE---------VLQNVASKSG---A--K-FS  141 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~---~--~-~~  141 (372)
                      |+++++++++||+++|++++|+++.++.+++.+++++++++++|+++....         .+........   .  . ..
T Consensus       154 n~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (666)
T PLN02654        154 MLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICL  233 (666)
T ss_pred             CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEE
Confidence            999999999999999999999999999999999999999999999875421         2222111110   0  0 00


Q ss_pred             ccCCCCC-------CCCC-----cccccccc-cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHH-HHHHHhhcc
Q 017382          142 LIPPVPN-------VSSE-----TTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ-VQMLTEAWE  207 (372)
Q Consensus       142 ~~~~~~~-------~~~~-----~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~  207 (372)
                      .......       ....     ........ ........++++++|+|||||||.||||+++|.+++.. .......++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~  313 (666)
T PLN02654        234 TYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFD  313 (666)
T ss_pred             EecccccccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcC
Confidence            0010000       0000     00000000 00112246789999999999999999999999998643 445566778


Q ss_pred             cCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHH
Q 017382          208 YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL  283 (372)
Q Consensus       208 ~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l  283 (372)
                      ++++|++++..|++|+.+....++.+|+.|+++++.++    +++..+++.          ++++++|+++++|++++.|
T Consensus       314 ~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l  383 (666)
T PLN02654        314 YKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDI----------VDKYKVTIFYTAPTLVRSL  383 (666)
T ss_pred             CCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHH
Confidence            99999999999999999987778899999999999874    478899988          8899999999999999999


Q ss_pred             HHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCCC--CCCCCCccc
Q 017382          284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVG  358 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG  358 (372)
                      .+....      .....++++||.++++|+++++++++++.+.+|   +++.+.||+||+++..+.+..  ...+++++|
T Consensus       384 ~~~~~~------~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G  457 (666)
T PLN02654        384 MRDGDE------YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT  457 (666)
T ss_pred             HhhCcc------ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccC
Confidence            875211      123457899999999999999999999999997   689999999999866553322  235678999


Q ss_pred             ccCCCceEEEeecC
Q 017382          359 NPLPGVQVSMILLL  372 (372)
Q Consensus       359 ~p~~g~~i~Ivd~d  372 (372)
                      +|+||++++|+|.+
T Consensus       458 ~p~~g~~v~i~d~~  471 (666)
T PLN02654        458 FPFFGVQPVIVDEK  471 (666)
T ss_pred             CCCCCceEEEECCC
Confidence            99999999999864

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.1e-45  Score=368.22  Aligned_cols=341  Identities=21%  Similarity=0.282  Sum_probs=258.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEe------------CC-----------ceeeHHHHHHHHHHHHHHHhhCCCCccccccccc
Q 017382            2 EVFKAAYKKGSMARDSVAIRA------------DQ-----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE   58 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~------------~~-----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~   58 (372)
                      |+.+.|.+.++.+||++|+..            ++           +.+||+|+.++++++|+.|.+             
T Consensus        59 t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-------------  125 (696)
T PLN02387         59 TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-------------  125 (696)
T ss_pred             CHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-------------
Confidence            678999999999999999942            12           348999999999999999999             


Q ss_pred             ccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC
Q 017382           59 NSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA  138 (372)
Q Consensus        59 ~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~  138 (372)
                          +|+++||+|+++++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+.........
T Consensus       126 ----lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~  201 (696)
T PLN02387        126 ----LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLET  201 (696)
T ss_pred             ----hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCC
Confidence                5999999999999999999999999999999999999999999999999999999999998777666655443321


Q ss_pred             --cccccCCCCCCCC-------C---ccccc-----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH
Q 017382          139 --KFSLIPPVPNVSS-------E---TTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM  201 (372)
Q Consensus       139 --~~~~~~~~~~~~~-------~---~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~  201 (372)
                        .++.++.......       .   ..+.+     ...........++|+++|+|||||||.||||++||++++.++..
T Consensus       202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~  281 (696)
T PLN02387        202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG  281 (696)
T ss_pred             ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHH
Confidence              1222221110000       0   00000     00001112345799999999999999999999999999988877


Q ss_pred             HHhhc-ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCc--------hhHHHHHHHhhCCCCCCCCCcceeE
Q 017382          202 LTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS--------VRGIWQRWRESYPVNGNRAGEAITA  272 (372)
Q Consensus       202 ~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~t~  272 (372)
                      ....+ .+.++|++++++|++|++++.. ....+..|+++.+.....        +...++.          ++++++|+
T Consensus       282 ~~~~~~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~----------i~~~~pT~  350 (696)
T PLN02387        282 VMTVVPKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGD----------ASALKPTL  350 (696)
T ss_pred             HHhhcCCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhh----------HHHhCCcE
Confidence            66554 5788999999999999999864 444577888877654321        1122333          77899999


Q ss_pred             eecchHHHHHHHHhhhhccH---------------------------------------HHHHhhhhhccCceEEEecCC
Q 017382          273 FTGVPTMYTRLIQGYEAMDT---------------------------------------ELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       273 ~~~~p~~~~~l~~~~~~~~~---------------------------------------~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      +.++|.++.++.+.......                                       ..........+++|.+++||+
T Consensus       351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa  430 (696)
T PLN02387        351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA  430 (696)
T ss_pred             EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence            99999999998765321000                                       000011112268999999999


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      ++++++.+.++..+|++++++||+||+++.++.....+...+++|+|+|++++||+|
T Consensus       431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd  487 (696)
T PLN02387        431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVS  487 (696)
T ss_pred             CCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEee
Confidence            999999888887789999999999999866554333345678999999999999998

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=3.5e-45  Score=364.02  Aligned_cols=335  Identities=19%  Similarity=0.211  Sum_probs=261.1

Q ss_pred             HHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++.+.++++.+|+++|+++      ..+++||+||.++++++|+.|++                 +|+++||+|+++++|
T Consensus        55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~n  117 (628)
T TIGR02316        55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-----------------LGVGRGDRVLIYMPM  117 (628)
T ss_pred             HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence            4567788888999999997      24689999999999999999999                 599999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhc---CCcccccCC
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP  145 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~  145 (372)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.......   ...++.+..
T Consensus       118 ~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~  197 (628)
T TIGR02316       118 IAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDR  197 (628)
T ss_pred             CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999998642         22233222211   112222221


Q ss_pred             CCC-CC--C--Ccccc---cccc--cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHH-HHHHHhhcccCCCCeE
Q 017382          146 VPN-VS--S--ETTVF---DQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQF  214 (372)
Q Consensus       146 ~~~-~~--~--~~~~~---~~~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~d~~  214 (372)
                      ... ..  .  .....   ....  ........++++++|+|||||||.||||+++|.++... .......++++++|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~  277 (628)
T TIGR02316       198 GLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVM  277 (628)
T ss_pred             CCCCcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEE
Confidence            100 00  0  00000   0000  00111235789999999999999999999999998644 3445556788999999


Q ss_pred             EEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhc
Q 017382          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (372)
Q Consensus       215 l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  290 (372)
                      ++..|++|+.+....++.+|+.|+++++.+.    +++..+++.          ++++++|+++++|++++.+.+.... 
T Consensus       278 ~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-  346 (628)
T TIGR02316       278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSI----------VERYGVRTMFSAPTAIRVLKKQDAA-  346 (628)
T ss_pred             EEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc-
Confidence            9999999999876678899999999999874    467888888          8889999999999999988764211 


Q ss_pred             cHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC----CCCCCCcccccCCCceE
Q 017382          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR----GARKAGTVGNPLPGVQV  366 (372)
Q Consensus       291 ~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~----~~~~~~svG~p~~g~~i  366 (372)
                           .....++++||.+++||+++++++.+++.+.+|..+++.||+||++..++....    ...+.+++|+|+||+++
T Consensus       347 -----~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v  421 (628)
T TIGR02316       347 -----WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHL  421 (628)
T ss_pred             -----ccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceE
Confidence                 123457899999999999999999999999899999999999999854332111    12456899999999999


Q ss_pred             EEeec
Q 017382          367 SMILL  371 (372)
Q Consensus       367 ~Ivd~  371 (372)
                      +|+|.
T Consensus       422 ~i~d~  426 (628)
T TIGR02316       422 RVLDE  426 (628)
T ss_pred             EEEEC
Confidence            99996

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-45  Score=358.61  Aligned_cols=336  Identities=16%  Similarity=0.211  Sum_probs=273.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|.++++++||++|++++++++||+||.++++++|++|.+                 .|+++||+|+++++|++++
T Consensus        44 ~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~-----------------~g~~~g~~V~i~~~n~~~~  106 (537)
T PRK13382         44 GPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQA-----------------LPIGEPRVVGIMCRNHRGF  106 (537)
T ss_pred             CHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEecCcHHH
Confidence            57788999999999999999999999999999999999999998                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCCccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQS  159 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  159 (372)
                      ++.++|++++|++++|+++.++.+++.+++++++++++|++.+....+.........  ....+............... 
T Consensus       107 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  185 (537)
T PRK13382        107 VEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAA-  185 (537)
T ss_pred             HHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhc-
Confidence            999999999999999999999999999999999999999998776655443221111  11111110000000000000 


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCce
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  239 (372)
                      .........+++.++++|||||||.||+|+++|+++..........+.+..+++++...|++|..++. .++.++..|++
T Consensus       186 ~~~~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~  264 (537)
T PRK13382        186 HAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFS-QLVLAASLACT  264 (537)
T ss_pred             cCcCCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHH-HHHHHHhcCcE
Confidence            00011123467899999999999999999999999988888777777888999999999999999985 67888999999


Q ss_pred             EEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +++.+.+++..+++.          ++++++|++.++|+++..+.+....      .....+++++|.+++||+++++++
T Consensus       265 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~gG~~l~~~~  328 (537)
T PRK13382        265 IVTRRRFDPEATLDL----------IDRHRATGLAVVPVMFDRIMDLPAE------VRNRYSGRSLRFAAASGSRMRPDV  328 (537)
T ss_pred             EEECCCcCHHHHHHH----------HHHhCCEEEEehHHHHHHHHcCCch------hcccCCccceeEEEEcCCCCCHHH
Confidence            999999999999998          7889999999999999998764211      112345678999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.|.+.+|.++++.||+||++.+++.... .....+++|+|++|++++|+|.+
T Consensus       329 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~  382 (537)
T PRK13382        329 VIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQD  382 (537)
T ss_pred             HHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCC
Confidence            999999999999999999999876653322 23456899999999999999864

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.8e-45  Score=363.64  Aligned_cols=332  Identities=24%  Similarity=0.348  Sum_probs=264.5

Q ss_pred             HHHHHHHHhCCcCCCceEEEe--------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI   73 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~--------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l   73 (372)
                      |+++.|.++++.+|+++|+++        ..+++||+||.+++.++|+.|++                 +|+++||+|++
T Consensus        26 t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-----------------~Gi~~gd~V~i   88 (632)
T PRK07529         26 STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-----------------LGVGPGDVVAF   88 (632)
T ss_pred             CHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEE
Confidence            688999999999999999986        35799999999999999999999                 59999999999


Q ss_pred             EcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch-----HHHHHHHHhhcCC-c-ccccCCC
Q 017382           74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-K-FSLIPPV  146 (372)
Q Consensus        74 ~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~-~~~~~~~  146 (372)
                      +++|++++++++|||+++| +++|+++.++++++.+++++++++++|++..+     .+.+......... + ++.+...
T Consensus        89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (632)
T PRK07529         89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA  167 (632)
T ss_pred             ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence            9999999999999999999 57999999999999999999999999997543     2333333222211 1 1111111


Q ss_pred             CCC-------------------CCCcccccccc-c--ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh
Q 017382          147 PNV-------------------SSETTVFDQSQ-A--EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE  204 (372)
Q Consensus       147 ~~~-------------------~~~~~~~~~~~-~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~  204 (372)
                      ...                   ........... .  .......++++++++|||||||.||+|.+||++++.++.....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~  247 (632)
T PRK07529        168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL  247 (632)
T ss_pred             ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence            000                   00000000000 0  0112235689999999999999999999999999998888777


Q ss_pred             hcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC--Cc----hhHHHHHHHhhCCCCCCCCCcceeEeecchH
Q 017382          205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK--FS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT  278 (372)
Q Consensus       205 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~  278 (372)
                      .+.+.++|++++.+|++|..+....++.++..|+++++.++  +.    ...+++.          ++++++|++.++|+
T Consensus       248 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~  317 (632)
T PRK07529        248 LLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKI----------VERYRINFLSGVPT  317 (632)
T ss_pred             hcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHH----------HHHhCCeEEEeHHH
Confidence            88889999999999999999988788999999999999864  21    2456666          78899999999999


Q ss_pred             HHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC-CCCCCCCcc
Q 017382          279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTV  357 (372)
Q Consensus       279 ~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~sv  357 (372)
                      ++..+++..         ....+++++|.+++||+++++++.++|++.+|+++++.||+||++.+++... ....+.+++
T Consensus       318 ~~~~l~~~~---------~~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~sv  388 (632)
T PRK07529        318 VYAALLQVP---------VDGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSV  388 (632)
T ss_pred             HHHHHHhCc---------ccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCc
Confidence            999998752         1234678999999999999999999999999999999999999986655433 234467899


Q ss_pred             cccCCCceEEEee
Q 017382          358 GNPLPGVQVSMIL  370 (372)
Q Consensus       358 G~p~~g~~i~Ivd  370 (372)
                      |+|+|+++++|++
T Consensus       389 G~~~p~~~v~i~~  401 (632)
T PRK07529        389 GLRLPYQRVRVVI  401 (632)
T ss_pred             ccccCCceEEEEE
Confidence            9999999999964

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.6e-45  Score=366.50  Aligned_cols=345  Identities=21%  Similarity=0.303  Sum_probs=257.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeC---------------------------CceeeHHHHHHHHHHHHHHHhhCCCCccccc
Q 017382            2 EVFKAAYKKGSMARDSVAIRAD---------------------------QKSYSYDQLASSALRISSLLCSNDLKTTSEK   54 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~   54 (372)
                      |+++.|.++++.+||++|+...                           .+++||+||.++++++|+.|.+         
T Consensus        70 t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~---------  140 (700)
T PTZ00216         70 NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE---------  140 (700)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH---------
Confidence            6889999999999999999862                           4789999999999999999999         


Q ss_pred             ccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHh
Q 017382           55 TKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS  134 (372)
Q Consensus        55 ~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~  134 (372)
                              +|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++....+.+.....
T Consensus       141 --------~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~  212 (700)
T PTZ00216        141 --------LGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMK  212 (700)
T ss_pred             --------hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhh
Confidence                    599999999999999999999999999999999999999999999999999999999998765544433222


Q ss_pred             h--cC-CcccccCCCCCCCCCc-----ccc--------cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHH
Q 017382          135 K--SG-AKFSLIPPVPNVSSET-----TVF--------DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ  198 (372)
Q Consensus       135 ~--~~-~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~  198 (372)
                      .  .. ..++.+..........     ...        ............++++++|+|||||||.||||++||+++++.
T Consensus       213 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~  292 (700)
T PTZ00216        213 SGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG  292 (700)
T ss_pred             hccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence            1  11 1222222111000000     000        000011122345789999999999999999999999999988


Q ss_pred             HHHHHhhc-----ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEe
Q 017382          199 VQMLTEAW-----EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF  273 (372)
Q Consensus       199 ~~~~~~~~-----~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~  273 (372)
                      +......+     .+.++|++++++|++|+++... ....+..|+++++.   ++..+.+.+...   ...++++++|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~---~~~l~~~~pT~~  365 (700)
T PTZ00216        293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARP---HGDLTEFRPVFL  365 (700)
T ss_pred             HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccc---cchHHHcCCcEE
Confidence            77765443     2467899999999999998854 45557888887763   344544432110   011678999999


Q ss_pred             ecchHHHHHHHHhhhhccHH---------------------------------HHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          274 TGVPTMYTRLIQGYEAMDTE---------------------------------LQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       274 ~~~p~~~~~l~~~~~~~~~~---------------------------------~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      .++|.+++.+.+........                                 +........+++|.+++||+++++++.
T Consensus       366 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~  445 (700)
T PTZ00216        366 IGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQ  445 (700)
T ss_pred             EechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence            99999999987643211000                                 000111123789999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +.++..++ +++++||+||+++..+.........+++|+|+||+++||+|.
T Consensus       446 ~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~  495 (700)
T PTZ00216        446 EFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDT  495 (700)
T ss_pred             HHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeec
Confidence            88887778 999999999998665544334456789999999999999985

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=8.5e-45  Score=356.16  Aligned_cols=335  Identities=21%  Similarity=0.312  Sum_probs=272.4

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      ++.+.|.++++.+|+++|+++.+      +.+||+||.++++++|++|.+                 .|+++||+|++++
T Consensus        25 ~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~Val~~   87 (547)
T PRK13295         25 TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-----------------LGVGRGDVVSCQL   87 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEC
Confidence            67888999999999999999865      899999999999999999999                 4999999999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch-----HHHHHHHHhhcCC--cccccCCCCC
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA--KFSLIPPVPN  148 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~  148 (372)
                      +|+++++++++|++++|++++|+++.++.+++.++++.++++++|+++++     .+.+.++......  .+..+... .
T Consensus        88 ~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  166 (547)
T PRK13295         88 PNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD-G  166 (547)
T ss_pred             CCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC-C
Confidence            99999999999999999999999999999999999999999999998754     2333333222211  11111110 0


Q ss_pred             CCCCcccc--------ccc-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecC
Q 017382          149 VSSETTVF--------DQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLP  219 (372)
Q Consensus       149 ~~~~~~~~--------~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p  219 (372)
                      ........        ... .........++++++|+|||||||.||+|+++|+++...+......++++++|++++..|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p  246 (547)
T PRK13295        167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASP  246 (547)
T ss_pred             ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecC
Confidence            00000000        000 000112245689999999999999999999999999998888888888999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (372)
Q Consensus       220 l~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  299 (372)
                      ++|..++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...        ...
T Consensus       247 ~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~--------~~~  308 (547)
T PRK13295        247 MAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL----------IRTEGVTFTMASTPFLTDLTRAVK--------ESG  308 (547)
T ss_pred             chhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------ccC
Confidence            99999987788999999999999999999999998          788999999999999999887532        123


Q ss_pred             hhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCC--CCCCCcccccCCCceEEEeecC
Q 017382          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       300 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+++++|.+++||+++++++.+.+.+.++.++++.||+||++.+.+.....  .....++|+|+++++++|+|++
T Consensus       309 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~  383 (547)
T PRK13295        309 RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDAD  383 (547)
T ss_pred             CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCC
Confidence            467899999999999999999999999999999999999998665433221  2335789999999999999864

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=8.3e-45  Score=361.51  Aligned_cols=336  Identities=20%  Similarity=0.257  Sum_probs=263.0

Q ss_pred             HHHHHHhCCcCCCceEEEeCC------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++.+.++++.+|+++|+++.+      +++||+||.+++.++|+.|++                 +|+++||+|+++++|
T Consensus        60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  122 (625)
T TIGR02188        60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-----------------LGVKKGDRVAIYMPM  122 (625)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence            456667888899999998643      489999999999999999999                 599999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC--Cc-ccccCC
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG--AK-FSLIPP  145 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~--~~-~~~~~~  145 (372)
                      +++++++++||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.+.....+  .. ++.+..
T Consensus       123 ~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (625)
T TIGR02188       123 IPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRR  202 (625)
T ss_pred             CHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcC
Confidence            999999999999999999999999999999999999999999998753         223333322221  11 111111


Q ss_pred             CCC---CCCC--ccc---cc-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH-HHhhcccCCCCeEE
Q 017382          146 VPN---VSSE--TTV---FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFL  215 (372)
Q Consensus       146 ~~~---~~~~--~~~---~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l  215 (372)
                      ...   ....  ...   .. ...........++++++|+|||||||.||||+++|.+++..... ....+++.++|+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~  282 (625)
T TIGR02188       203 TGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFW  282 (625)
T ss_pred             CCCCcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEE
Confidence            100   0000  000   00 00011122356789999999999999999999999998765443 34456888999999


Q ss_pred             EecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhcc
Q 017382          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (372)
Q Consensus       216 ~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  291 (372)
                      +..|++|..+....++.+|..|+++++.+.    +++..+++.          ++++++|++.++|++++.+.+....  
T Consensus       283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--  350 (625)
T TIGR02188       283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEI----------IEKHKVTIFYTAPTAIRALMRLGDE--  350 (625)
T ss_pred             ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc--
Confidence            999999998876678899999999999764    478889988          8889999999999999999875321  


Q ss_pred             HHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCCC--CCCCCCcccccCCCceE
Q 017382          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQV  366 (372)
Q Consensus       292 ~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~~i  366 (372)
                          .....++++||.+++||+++++++++++.+.++   +++++.||+||+++.++....  ...+++++|+|++|+++
T Consensus       351 ----~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~  426 (625)
T TIGR02188       351 ----WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEP  426 (625)
T ss_pred             ----ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceE
Confidence                123457899999999999999999999999885   789999999999876543321  23567899999999999


Q ss_pred             EEeecC
Q 017382          367 SMILLL  372 (372)
Q Consensus       367 ~Ivd~d  372 (372)
                      +|+|.+
T Consensus       427 ~i~d~~  432 (625)
T TIGR02188       427 AVVDEE  432 (625)
T ss_pred             EEECCC
Confidence            999854

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-44  Score=351.25  Aligned_cols=329  Identities=24%  Similarity=0.341  Sum_probs=274.3

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      .+.+.+.++|+.+||++|++++++.+||+||.++++++|+.|++.                +|+++||+|+++++|++++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~----------------~g~~~~~~V~i~~~~~~~~   66 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYE----------------LNVKKGERIAILSQNSLEY   66 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            367889999999999999999999999999999999999999863                5999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc-ccccCCCCCCCCCcccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      +++++|++++|++++|+++..+++++.++++++++++++++++..+.+.......... ...+.......       ...
T Consensus        67 ~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  139 (496)
T PRK06839         67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEIE-------DRK  139 (496)
T ss_pred             HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhhh-------ccC
Confidence            9999999999999999999999999999999999999999988776666554332211 11111111000       000


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++|+|||||||.||+|.++|.++..........+.+..+|++++.+|++|..++....+.++..|+++
T Consensus       140 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~  219 (496)
T PRK06839        140 IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVI  219 (496)
T ss_pred             CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEE
Confidence            11122345689999999999999999999999999877776677778889999999999999999876677889999999


Q ss_pred             EEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      ++.+.++++.+++.          ++++++|++.++|++++.+++...        ....+++++|.+++||+++++++.
T Consensus       220 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~~~~~~~  281 (496)
T PRK06839        220 IVPRKFEPTKALSM----------IEKHKVTVVMGVPTIHQALINCSK--------FETTNLQSVRWFYNGGAPCPEELM  281 (496)
T ss_pred             EEccCCCHHHHHHH----------HHhhCCeEEEehHHHHHHHHhCcc--------cccCCCcccceEEECCCCCCHHHH
Confidence            99999999999998          788999999999999999987532        223467899999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccCC--CCCCCCCCcccccCCCceEEEeecC
Q 017382          321 QQWETITGHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.|.+. |.++.+.||+||++.+++..  .......+++|+|+++++++|+|++
T Consensus       282 ~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  334 (496)
T PRK06839        282 REFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDEN  334 (496)
T ss_pred             HHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCC
Confidence            999886 99999999999998654422  2223567899999999999999864

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-44  Score=360.11  Aligned_cols=340  Identities=20%  Similarity=0.240  Sum_probs=257.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      ++.+.|.++++++||++|+++.+      +.+||+||.++++++|+.|.+                 .|+++||+|++++
T Consensus        50 ~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~  112 (624)
T PRK12582         50 SIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLD-----------------LGLDPGRPVMILS  112 (624)
T ss_pred             CHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEec
Confidence            67889999999999999998743      689999999999999999998                 4999999999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCCCCH-----HHHHHHHhhCCceEEEeccch--HHHHHHHHhhcCCcccccCCCCC
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPE-----SELLHVMHDSDISMVLSTEDY--REVLQNVASKSGAKFSLIPPVPN  148 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  148 (372)
                      +|+++++++++||+++|++++|+++.++.     +++.+++++++++++|+++..  .+.+.... ......+.+.....
T Consensus       113 ~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~  191 (624)
T PRK12582        113 GNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALD-LLDVTVVHVTGPGE  191 (624)
T ss_pred             CCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhh-hcCceEEEEcCCCc
Confidence            99999999999999999999999999874     899999999999999998642  12222111 11112222211100


Q ss_pred             CCCCcccc---cccc----cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCC---CCeEEEec
Q 017382          149 VSSETTVF---DQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS---ADQFLHCL  218 (372)
Q Consensus       149 ~~~~~~~~---~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~d~~l~~~  218 (372)
                      ........   ....    ........++++++|+|||||||.||||++||+++..+.......+....   .++++.++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~l  271 (624)
T PRK12582        192 GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWM  271 (624)
T ss_pred             ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEec
Confidence            00000000   0000    00112345789999999999999999999999999887776655444443   58999999


Q ss_pred             CchhHHHHHHHHHHHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHh
Q 017382          219 PLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (372)
Q Consensus       219 pl~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  297 (372)
                      |++|.+++...++.++..|+++++.+. +.+..+.+.+..       ++++++|+++++|+++..+.+.+...    +..
T Consensus       272 Pl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~-------i~~~~~t~~~~vP~~~~~l~~~~~~~----~~~  340 (624)
T PRK12582        272 PWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRN-------LREISPTVYGNVPAGYAMLAEAMEKD----DAL  340 (624)
T ss_pred             hHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHH-------HHhcCCeEEeccCHHHHHHHHHHhhC----HHH
Confidence            999999987677788999999999763 444433333221       78899999999999999987653321    122


Q ss_pred             hhhhccCceEEEecCCCCCHHHHHHHHHHh----C--CccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT----G--HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       298 ~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~----~--~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      ...++++||.+++||+++++++.+.|.+.+    |  +++++.||+||++.++........+.+++|+|+||++++|++
T Consensus       341 ~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~  419 (624)
T PRK12582        341 RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP  419 (624)
T ss_pred             HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc
Confidence            345678999999999999999999998863    3  689999999999866553222335678999999999999975

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-44  Score=351.93  Aligned_cols=337  Identities=27%  Similarity=0.399  Sum_probs=278.0

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.|.+.++.+|+++|+.++++++||+||.+++.++|+.|.+                 .|+++||+|+++++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~g~~V~l~~~~~~~   67 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAA-----------------LGIGKGDRVAIWAPNSPH   67 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence            468899999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC-ccc-ccCCCCCCC------CC
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFS-LIPPVPNVS------SE  152 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~------~~  152 (372)
                      ++++++||+++|++++|+++..+.+++.+++++++++++++++............... ..+ .........      ..
T Consensus        68 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (513)
T PRK07656         68 WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTF  147 (513)
T ss_pred             HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccH
Confidence            9999999999999999999999999999999999999999998766655544322221 111 111110000      00


Q ss_pred             ccccccc-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH
Q 017382          153 TTVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (372)
Q Consensus       153 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~  231 (372)
                      ....... .........++++++|+|||||||.||+|.++|.++...+......++++++|++++.+|++|.+++...++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (513)
T PRK07656        148 TDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN  227 (513)
T ss_pred             HHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHH
Confidence            0000000 011223456789999999999999999999999999998888888889999999999999999999887789


Q ss_pred             HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      .++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+....        ...+++++|.+++|
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~l~~v~~~  289 (513)
T PRK07656        228 APLMRGATILPLPVFDPDEVFRL----------IETERITVLPGPPTMYNSLLQHPDR--------SAEDLSSLRLAVTG  289 (513)
T ss_pred             HHHHcCceEEecCcCCHHHHHHH----------HHHhCCeEEechHHHHHHHHcCCCc--------CCCCccceeeEEec
Confidence            99999999999999999999998          7889999999999999999876332        22367899999999


Q ss_pred             CCCCCHHHHHHHHHHhCC-ccccccccccccccccCCC-CCCCC--CCcccccCCCceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPL-RGARK--AGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~-~~~~~--~~svG~p~~g~~i~Ivd~d  372 (372)
                      |+++++++.+.|.+.++. .+++.||+||++++.+... .....  .+++|+|++|++++|+|++
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~  354 (513)
T PRK07656        290 AASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNEL  354 (513)
T ss_pred             CCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCC
Confidence            999999999999999998 9999999999976655332 22222  6889999999999999853

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.7e-45  Score=369.76  Aligned_cols=334  Identities=25%  Similarity=0.353  Sum_probs=264.6

Q ss_pred             CHHHHHHHHhCCcCCC-ceEEEeC-CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARD-SVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~-~~al~~~-~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      .|+.+.|.++++++|+ ++|+.+. ++.+||+||.++++++|++|.+                  .+++||+|+++++|+
T Consensus       204 ~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~------------------~~~~gd~Val~~~n~  265 (718)
T PRK08043        204 ETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEK------------------YSVEGERIGLMLPNA  265 (718)
T ss_pred             CCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHH------------------hcCCCceEEEEcCCc
Confidence            3678899999999998 6888763 4789999999999999999988                  358999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHH--HHHhhcC-CcccccCCCCCCCCCccc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ--NVASKSG-AKFSLIPPVPNVSSETTV  155 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~  155 (372)
                      ++++++++||+++|++++|+++.++++++.+++++++++++|++++..+...  ....... ...+.+............
T Consensus       266 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  345 (718)
T PRK08043        266 TISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADK  345 (718)
T ss_pred             HHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHH
Confidence            9999999999999999999999999999999999999999999876544211  0111111 011111110000000000


Q ss_pred             ----cc-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 017382          156 ----FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       156 ----~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                          .. ...........++|+++|+|||||||.||||++||+++...+......++++.+|++++.+|++|.+++...+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~  425 (718)
T PRK08043        346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL  425 (718)
T ss_pred             HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence                00 0000111234568999999999999999999999999999888887878899999999999999999987778


Q ss_pred             HHHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEE
Q 017382          231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~  309 (372)
                      +.++..|+++++.+. +++..+++.          ++++++|+++++|+++..+.+.          ....++++||.++
T Consensus       426 ~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~----------~~~~~~~~lr~i~  485 (718)
T PRK08043        426 FTPLLTGAEVFLYPSPLHYRIVPEL----------VYDRNCTVLFGTSTFLGNYARF----------ANPYDFARLRYVV  485 (718)
T ss_pred             HHHHHcCCEEEEeCCcccHHHHHHH----------HHhcCCeEEEchHHHHHHhhhh----------cCcccccceEEEE
Confidence            899999999998875 566677776          7789999999999998876542          1234678999999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       310 ~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +||+++++++.+.|.+.||+++++.||+||++.+.+.......+.+++|+|+||++++|+|.+
T Consensus       486 ~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~  548 (718)
T PRK08043        486 AGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVP  548 (718)
T ss_pred             EeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCC
Confidence            999999999999999999999999999999986655433334567899999999999999864

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-44  Score=360.15  Aligned_cols=338  Identities=17%  Similarity=0.141  Sum_probs=254.4

Q ss_pred             HHHHHHhCCc--CCCceEEEeC------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            4 FKAAYKKGSM--ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         4 ~~~l~~~a~~--~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      ++.+.+++..  +|+++|+++.      .+++||+||.+++.++|+.|++                 +|+++||+|++++
T Consensus        62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GDrV~i~~  124 (647)
T PTZ00237         62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-----------------LNISKNDNVLIYM  124 (647)
T ss_pred             HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence            4455666654  7999999873      3689999999999999999999                 5999999999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc---------hHHHHHHHHhhcC---Cccccc
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED---------YREVLQNVASKSG---AKFSLI  143 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~---~~~~~~  143 (372)
                      +|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.         ..+.+.+......   ..++.+
T Consensus       125 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  204 (647)
T PTZ00237        125 ANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITL  204 (647)
T ss_pred             CCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999752         2233333222111   111111


Q ss_pred             CCCC--------------CCCCCccccc---------ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhh-HHHHH
Q 017382          144 PPVP--------------NVSSETTVFD---------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQV  199 (372)
Q Consensus       144 ~~~~--------------~~~~~~~~~~---------~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~-l~~~~  199 (372)
                      ....              .........+         ...........++++++|+|||||||.||||+++|.+ +....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~  284 (647)
T PTZ00237        205 FRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLK  284 (647)
T ss_pred             EcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHH
Confidence            1000              0000000000         0000011234678999999999999999999999998 44433


Q ss_pred             HHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCC--c----hhHHHHHHHhhCCCCCCCCCcceeEe
Q 017382          200 QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF--S----VRGIWQRWRESYPVNGNRAGEAITAF  273 (372)
Q Consensus       200 ~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~--~----~~~~~~~~~~~~~~~~~i~~~~~t~~  273 (372)
                      ......+....+|++++..|++|+.+.. .++.++..|+++++.+..  .    +..+++.          ++++++|++
T Consensus       285 ~~~~~~~~~~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~----------i~~~~vt~~  353 (647)
T PTZ00237        285 YYWRSIIEKDIPTVVFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNT----------IEKHKVTHT  353 (647)
T ss_pred             HHHHHhcCCCCCcEEEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHH----------HHHhCeEEE
Confidence            3334455677889999999999987664 578899999999997641  2    5778888          889999999


Q ss_pred             ecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-CCC
Q 017382          274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GAR  352 (372)
Q Consensus       274 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~  352 (372)
                      .++|++++.+++......   ......++++||.+++||+++++++.+++.+.+|+++++.||+||+++..+.... ...
T Consensus       354 ~~~P~~~~~l~~~~~~~~---~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~  430 (647)
T PTZ00237        354 LTLPKTIRYLIKTDPEAT---IIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINI  430 (647)
T ss_pred             EeCHHHHHHHHhhCcccc---ccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCC
Confidence            999999999987421100   0123457899999999999999999999999999999999999999865443222 223


Q ss_pred             CCCcccccCCCceEEEeecC
Q 017382          353 KAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       353 ~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ..+++|+|+||++++|+|++
T Consensus       431 ~~~s~G~p~~g~~~~i~d~~  450 (647)
T PTZ00237        431 PYNATGVPSIFIKPSILSED  450 (647)
T ss_pred             CCCCCccCcCCceEEEECCC
Confidence            44899999999999999864

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=4.6e-44  Score=350.26  Aligned_cols=336  Identities=21%  Similarity=0.297  Sum_probs=271.4

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +|+.+.+.+++..+|+++|+++.  ++++||.||.++++++|+.|.+                 .|+++||+|+++++|+
T Consensus        23 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-----------------~g~~~gd~V~i~~~~~   85 (537)
T PLN02246         23 LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-----------------LGIRQGDVVMLLLPNC   85 (537)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCC
Confidence            57889999999999999999875  5789999999999999999998                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCC-CCCCccccc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETTVFD  157 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  157 (372)
                      ++++++++||+++|++++|+++.++.+++.++++.++++++|+++...+.+...........+.++.... .........
T Consensus        86 ~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (537)
T PLN02246         86 PEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQ  165 (537)
T ss_pred             hHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhc
Confidence            9999999999999999999999999999999999999999999988776665543321122222221110 000000000


Q ss_pred             -ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382          158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (372)
Q Consensus       158 -~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~~~~  232 (372)
                       ...........++++++++|||||||.||+|+++|++++........    .+.+..+|++++.+|++|..++...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~  245 (537)
T PLN02246        166 ADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLC  245 (537)
T ss_pred             CCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHH
Confidence             00001122345789999999999999999999999999887765433    4578899999999999999998767788


Q ss_pred             HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...        ....+++++|.+++||
T Consensus       246 ~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~--------~~~~~~~~lr~~~~gg  307 (537)
T PLN02246        246 GLRVGAAILIMPKFEIGALLEL----------IQRHKVTIAPFVPPIVLAIAKSPV--------VEKYDLSSIRMVLSGA  307 (537)
T ss_pred             HHhcCCEEEEeCCCCHHHHHHH----------HHHhCceEEEcchHHHHHHhcCcc--------ccccCccceeEEEEec
Confidence            8999999999999999999988          788999999999999998876522        2234678999999999


Q ss_pred             CCCCHHHHHHHHHHh-CCccccccccccccccccCCC-----CCCCCCCcccccCCCceEEEeec
Q 017382          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-----RGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-----~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +++++++.+.+.+.+ +..+++.||+||++.+++...     ....+++++|+|+++++++|+|.
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~  372 (537)
T PLN02246        308 APLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDP  372 (537)
T ss_pred             CcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecC
Confidence            999999999999988 678999999999986544221     11235678999999999999985

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-44  Score=354.23  Aligned_cols=334  Identities=22%  Similarity=0.267  Sum_probs=267.1

Q ss_pred             HHHHHHhCC-cCCCceEEEeCC----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            4 FKAAYKKGS-MARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         4 ~~~l~~~a~-~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      ++.+.+++. .+|+++|+.+.+    +++||+||.+++.++|..|.+                 .|+++||+|+++++|+
T Consensus        46 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~gv~~gd~V~i~~~n~  108 (570)
T PRK04319         46 YEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDRVFIFMPRI  108 (570)
T ss_pred             HHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCC
Confidence            356777776 579999998743    689999999999999999998                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--CcccccCCCCCC-CCCccc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNV-SSETTV  155 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~  155 (372)
                      ++++++++|++++|++++|+++.++++++.+++++++++++|+++...+.....  ...  ..++.+...... ......
T Consensus       109 ~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  186 (570)
T PRK04319        109 PELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD--DLPSLKHVLLVGEDVEEGPGTLDF  186 (570)
T ss_pred             HHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh--cCCCceEEEEECCCcCCCcCccCH
Confidence            999999999999999999999999999999999999999999998765433211  111  111111111100 000000


Q ss_pred             c----cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH
Q 017382          156 F----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (372)
Q Consensus       156 ~----~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~  231 (372)
                      .    ............++++++|+|||||||.||+|+++|++++.++......+.+.++|++++..|++|..+....++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~  266 (570)
T PRK04319        187 NALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIF  266 (570)
T ss_pred             HHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHH
Confidence            0    000111122345689999999999999999999999999988888888888999999999999999998877788


Q ss_pred             HHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382          232 APLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (372)
Q Consensus       232 ~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~  310 (372)
                      .++..|+++++.+ .+++..+++.          ++++++|+++++|++++.+.+....      .....+++++|.+++
T Consensus       267 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~~~~  330 (570)
T PRK04319        267 APWLNGATNVIDGGRFSPERWYRI----------LEDYKVTVWYTAPTAIRMLMGAGDD------LVKKYDLSSLRHILS  330 (570)
T ss_pred             HHHhcCceEEEECCCCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcCCc------ccccCCcccceEEEE
Confidence            9999999999875 5889999998          8889999999999999999764211      112346789999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCccccccccccccccccCC-CCCCCCCCcccccCCCceEEEeecC
Q 017382          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ||+++++++.+.+.+.+|.++++.||+||++...+.. ......++++|+|+||++++|+|++
T Consensus       331 gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~  393 (570)
T PRK04319        331 VGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQ  393 (570)
T ss_pred             cccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCC
Confidence            9999999999999999999999999999998654432 2223467899999999999999864

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.1e-44  Score=355.92  Aligned_cols=336  Identities=20%  Similarity=0.278  Sum_probs=260.8

Q ss_pred             HHHHHHhCCcCCCceEEEeCC------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++.+.++++++|+++|+++.+      +++||+||.+++.++|+.|++                 +|+++||+|+++++|
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  132 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKS-----------------LGVKKGDRVAIYMPM  132 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence            355777888899999999643      479999999999999999999                 499999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH---------HHHHHHHhhcC-Cc-ccccCCC
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---------EVLQNVASKSG-AK-FSLIPPV  146 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~-~~~~~~~  146 (372)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|+++...         +.+........ .. ++.....
T Consensus       133 ~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (637)
T PRK00174        133 IPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRT  212 (637)
T ss_pred             CHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCC
Confidence            9999999999999999999999999999999999999999999986532         22222222111 11 1111110


Q ss_pred             CC---CCC--C---ccccc-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH-HHhhcccCCCCeEEE
Q 017382          147 PN---VSS--E---TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLH  216 (372)
Q Consensus       147 ~~---~~~--~---~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l~  216 (372)
                      ..   ...  .   ..... ...........++++++|+|||||||.||||+++|++++..... ....++++++|++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~  292 (637)
T PRK00174        213 GGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWC  292 (637)
T ss_pred             CCCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEE
Confidence            00   000  0   00000 00011122345689999999999999999999999998765443 344568889999999


Q ss_pred             ecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccH
Q 017382          217 CLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT  292 (372)
Q Consensus       217 ~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~  292 (372)
                      ..|++|..+....++.+|+.|+++++.+.    +++..+++.          ++++++|++.++|++++.+++....   
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~---  359 (637)
T PRK00174        293 TADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV----------IDKHKVTIFYTAPTAIRALMKEGDE---  359 (637)
T ss_pred             cCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHH----------HHhcCCeEEeecHHHHHHHHhcCCc---
Confidence            99999999886678899999999999753    478888888          8899999999999999998875221   


Q ss_pred             HHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCCC--CCCCCCcccccCCCceEE
Q 017382          293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVS  367 (372)
Q Consensus       293 ~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~~i~  367 (372)
                         .....++++||.+++||+++++++++.+.+.++   +++++.||+||+++..+....  ...+.+++|+|++|++++
T Consensus       360 ---~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~  436 (637)
T PRK00174        360 ---HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPA  436 (637)
T ss_pred             ---ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEE
Confidence               112346789999999999999999999998886   789999999999865543221  234568999999999999


Q ss_pred             EeecC
Q 017382          368 MILLL  372 (372)
Q Consensus       368 Ivd~d  372 (372)
                      |+|.+
T Consensus       437 i~d~~  441 (637)
T PRK00174        437 VVDEE  441 (637)
T ss_pred             EECCC
Confidence            99964

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.1e-43  Score=344.99  Aligned_cols=332  Identities=33%  Similarity=0.507  Sum_probs=273.4

Q ss_pred             HHHHHHHHhCCcCCCceEEEe-CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            2 EVFKAAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ++++.+..++ .+|+++|+.. +++.+||+||.+++.++|+.|++                 +|+++||+|+++++|+++
T Consensus         4 ~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~-----------------~g~~~gd~v~i~~~~~~e   65 (504)
T PRK07514          4 NLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVA-----------------LGVKPGDRVAVQVEKSPE   65 (504)
T ss_pred             cHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence            5789999999 8999999997 67899999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc-ccccCCCCCCCCCccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQS  159 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (372)
                      +++.++|++++|++++|+++..+.+++.++++.++++++++++...+.+.......... ...+................
T Consensus        66 ~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (504)
T PRK07514         66 ALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAP  145 (504)
T ss_pred             HHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcC
Confidence            99999999999999999999999999999999999999999988776665554332222 11111110000000000000


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCce
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  239 (372)
                      .........++++++|+|||||||.||+|.+||+++...+......+++.++|++++.+|++|..++...++.+++.|++
T Consensus       146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~  225 (504)
T PRK07514        146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS  225 (504)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence            01112234578999999999999999999999999999988888888899999999999999999987778899999999


Q ss_pred             EEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +++.+.+++..+++.          +  .++|++.++|+++..+++...        .....++++|.+++||+++++++
T Consensus       226 ~~~~~~~~~~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~~~~~~  285 (504)
T PRK07514        226 MIFLPKFDPDAVLAL----------M--PRATVMMGVPTFYTRLLQEPR--------LTREAAAHMRLFISGSAPLLAET  285 (504)
T ss_pred             EEECCCCCHHHHHHH----------H--HhheeeecHHHHHHHHHcCCC--------CCcccccceeeEEecCCCCCHHH
Confidence            999999999999888          5  369999999999998876521        22346789999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      .+.|.+.++.++++.||+||++...+.........+++|+|++|++++|+|+
T Consensus       286 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~  337 (504)
T PRK07514        286 HREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDP  337 (504)
T ss_pred             HHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEEEEC
Confidence            9999999999999999999998665544433445688999999999999993

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=4.9e-44  Score=358.63  Aligned_cols=330  Identities=20%  Similarity=0.183  Sum_probs=254.8

Q ss_pred             HHHhCCcCCCceEEEeCC--------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            7 AYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         7 l~~~a~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      |.+++..+|+++|+++.+        +++||+||.+++.++|+.|++                 +|+++||+|+++++|+
T Consensus       181 l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrVai~~pn~  243 (728)
T PLN03052        181 LTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-----------------LGFEKGDAIAIDMPMN  243 (728)
T ss_pred             HHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCC
Confidence            444556789999999754        379999999999999999999                 5999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH------HHHHHHHhhcCCcccccCCCCC---C
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR------EVLQNVASKSGAKFSLIPPVPN---V  149 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~  149 (372)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|+++...      +....+........+++.....   .
T Consensus       244 ~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~  323 (728)
T PLN03052        244 VHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRV  323 (728)
T ss_pred             HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCcccc
Confidence            999999999999999999999999999999999999999999987532      1122221111112222211000   0


Q ss_pred             ------CCCccccccc-----ccc-cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEe
Q 017382          150 ------SSETTVFDQS-----QAE-KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC  217 (372)
Q Consensus       150 ------~~~~~~~~~~-----~~~-~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~  217 (372)
                            ..........     ... ......++++++|+|||||||.||||+++|.+++........+++++++|++++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~  403 (728)
T PLN03052        324 KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWP  403 (728)
T ss_pred             ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEEC
Confidence                  0000000000     000 0111245899999999999999999999999987776666666788999999999


Q ss_pred             cCchhHHHHHHHHHHHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHH
Q 017382          218 LPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (372)
Q Consensus       218 ~pl~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~  296 (372)
                      .|++|+.+.+ .++.+|..|+++++.++ +.+..+++.          ++++++|++.++|++++.+.+..        .
T Consensus       404 ~~l~w~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~----------i~~~~vT~l~~~Pt~l~~l~~~~--------~  464 (728)
T PLN03052        404 TNLGWMMGPW-LVYASLLNGATLALYNGSPLGRGFAKF----------VQDAKVTMLGTVPSIVKTWKNTN--------C  464 (728)
T ss_pred             CCcHHHhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHH----------HHHHCCCEEEECHHHHHHHHhcC--------C
Confidence            9999999985 57889999999999875 455678887          78899999999999999987641        1


Q ss_pred             hhhhhccCceEEEecCCCCCHHHHHHHHHHhC-Ccccccccccccccccc-CCCCCCCCCCcccccCCCceEEEeecC
Q 017382          297 ASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       297 ~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~-~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ....++++||.+++||++++++....+.+.++ .++++.||+||+++... .........+++|+|++|++++|+|.+
T Consensus       465 ~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~  542 (728)
T PLN03052        465 MAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDS  542 (728)
T ss_pred             cccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCC
Confidence            13457899999999999999999888777765 57999999999875433 222223456889999999999999964

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-43  Score=345.59  Aligned_cols=336  Identities=23%  Similarity=0.337  Sum_probs=280.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.|.++++.+|+++|+.+.++.+||+||.+++.++|+.|.+.                 |+++|++|+++++|+++
T Consensus         6 ~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------g~~~~~~V~l~~~~~~~   68 (521)
T PRK06187          6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRAL-----------------GVKKGDRVAVFDWNSHE   68 (521)
T ss_pred             CCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            4788999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCC------CCCC
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPN------VSSE  152 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~  152 (372)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++.+..+.+.+.......  +.+.......      ....
T Consensus        69 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (521)
T PRK06187         69 YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEY  148 (521)
T ss_pred             HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccH
Confidence            9999999999999999999999999999999999999999999888877776554432  2222211110      0000


Q ss_pred             ccccc-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH
Q 017382          153 TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (372)
Q Consensus       153 ~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~  231 (372)
                      ..... ...........++++++++|||||||.||++.+||+++..........++++.+|++++.+|++|..++.. .+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~  227 (521)
T PRK06187        149 EELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PY  227 (521)
T ss_pred             HHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HH
Confidence            00000 01111123455688999999999999999999999999998888888889999999999999999998865 44


Q ss_pred             HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      .++..|+++++.+.+++..+++.          ++++++|+++++|+++..+.+....        ...+++++|.+++|
T Consensus       228 ~~l~~G~~~v~~~~~~~~~~~~~----------l~~~~~t~l~~~p~~~~~l~~~~~~--------~~~~~~~l~~v~~~  289 (521)
T PRK06187        228 LALMAGAKQVIPRRFDPENLLDL----------IETERVTFFFAVPTIWQMLLKAPRA--------YFVDFSSLRLVIYG  289 (521)
T ss_pred             HHHHhCCEEEecCCCCHHHHHHH----------HHHhCCeEEEchHHHHHHHHcCcCC--------CccCcchhhEEEEc
Confidence            58999999999999999999888          7889999999999999999876432        23467899999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCC------CCCCcccccCCCceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA------RKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~------~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      |+++++++++.|.+.+++++++.||+||++.+........      ...+++|+|+++++++|+|++
T Consensus       290 Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~  356 (521)
T PRK06187        290 GAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD  356 (521)
T ss_pred             CcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCC
Confidence            9999999999999999999999999999987655432222      266899999999999999864

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-43  Score=347.96  Aligned_cols=337  Identities=22%  Similarity=0.308  Sum_probs=265.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      |+.+.|.++++.+|+++|++.+++.+||+||.+++.++|+.|.+.                .|+++||+|+++++|++++
T Consensus        25 ~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~----------------~gi~~gd~Vai~~~n~~~~   88 (562)
T PRK05677         25 NIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQH----------------TDLKPGDRIAVQLPNVLQY   88 (562)
T ss_pred             cHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            688899999999999999999999999999999999999999862                3999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCC------------
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV------------  149 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  149 (372)
                      ++++||++++|++++|+++..+.+++.+++++++++++|++++....+.+.......+.+.+......            
T Consensus        89 ~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
T PRK05677         89 PVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAV  168 (562)
T ss_pred             HHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccc
Confidence            99999999999999999999999999999999999999998876655544432221111111110000            


Q ss_pred             -------------CCCccccc-----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc--cC
Q 017382          150 -------------SSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YT  209 (372)
Q Consensus       150 -------------~~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~  209 (372)
                                   .......+     ...........++++++|+|||||||.||+|+++|+++..++......+.  +.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  248 (562)
T PRK05677        169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLN  248 (562)
T ss_pred             hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCC
Confidence                         00000000     00000112345689999999999999999999999999887766555443  33


Q ss_pred             -CCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhh
Q 017382          210 -SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (372)
Q Consensus       210 -~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  287 (372)
                       ..+++++.+|++|..++...++.++..|++.++.+ .+++..+++.          ++++++|+++++|+++..+.+..
T Consensus       249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~  318 (562)
T PRK05677        249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE----------LGKWKFSGFVGLNTLFVALCNNE  318 (562)
T ss_pred             CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH----------HHHcCceEEecHHHHHHHHHhCc
Confidence             34688999999999998766777888888777665 4678888888          88899999999999999887641


Q ss_pred             hhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEE
Q 017382          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVS  367 (372)
Q Consensus       288 ~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~  367 (372)
                              .....+++++|.+++||+++++++.+.|.+.+|+++++.||+||++.++.........++++|+|+++++++
T Consensus       319 --------~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~  390 (562)
T PRK05677        319 --------AFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCK  390 (562)
T ss_pred             --------ccccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEE
Confidence                    112235678999999999999999999999899999999999998866654433344668899999999999


Q ss_pred             EeecC
Q 017382          368 MILLL  372 (372)
Q Consensus       368 Ivd~d  372 (372)
                      |+|+|
T Consensus       391 i~d~~  395 (562)
T PRK05677        391 VIDDD  395 (562)
T ss_pred             EECCC
Confidence            99864

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-43  Score=349.86  Aligned_cols=337  Identities=22%  Similarity=0.306  Sum_probs=270.0

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.+.++++++|+++|+.++++.+||.||.++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~-----------------~gi~~gd~V~l~~~n~~~   94 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRA-----------------LGVRPGDRVAIVLPNCPQ   94 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCHH
Confidence            468889999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCccc-ccCCCC------------
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS-LIPPVP------------  147 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------  147 (372)
                      ++++++|++++|++++|+++.++.+++.+++++++++++|+++.....+..+........+ .+....            
T Consensus        95 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  174 (573)
T PRK05605         95 HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRL  174 (573)
T ss_pred             HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccc
Confidence            9999999999999999999999999999999999999999988766555444322111111 110000            


Q ss_pred             ---CCC-----------CCccccc---c-ccc----ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh
Q 017382          148 ---NVS-----------SETTVFD---Q-SQA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA  205 (372)
Q Consensus       148 ---~~~-----------~~~~~~~---~-~~~----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~  205 (372)
                         ...           ......+   . ...    .......++++++++|||||||.||+|.+||+++..++......
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~  254 (573)
T PRK05605        175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAW  254 (573)
T ss_pred             ccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhh
Confidence               000           0000000   0 000    11123456899999999999999999999999998877654443


Q ss_pred             cc-c-CCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHH
Q 017382          206 WE-Y-TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL  283 (372)
Q Consensus       206 ~~-~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l  283 (372)
                      +. + ...+++++.+|++|.+|+...++.++..|+++++.+.++++.+++.          ++++++|++.++|++++.+
T Consensus       255 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l  324 (573)
T PRK05605        255 VPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA----------MKKHPPTWLPGVPPLYEKI  324 (573)
T ss_pred             ccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHhCCEEEEchHHHHHHH
Confidence            32 2 3478999999999999987777788999999999999999999998          7889999999999999999


Q ss_pred             HHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCC-CCCCCCCCcccccCC
Q 017382          284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLP  362 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~~  362 (372)
                      .+...        ....+++++|.+++||+++++++.+.|.+.++.++++.||+||++++++.. .....+.+++|+|++
T Consensus       325 ~~~~~--------~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~  396 (573)
T PRK05605        325 AEAAE--------ERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFP  396 (573)
T ss_pred             HhCcc--------ccCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCC
Confidence            87532        223467899999999999999999999998899999999999998665533 222345689999999


Q ss_pred             CceEEEeecC
Q 017382          363 GVQVSMILLL  372 (372)
Q Consensus       363 g~~i~Ivd~d  372 (372)
                      |++++|+|.+
T Consensus       397 ~~~~~i~d~~  406 (573)
T PRK05605        397 DTEVRIVDPE  406 (573)
T ss_pred             CCEEEEEcCC
Confidence            9999999864

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-44  Score=336.95  Aligned_cols=342  Identities=24%  Similarity=0.359  Sum_probs=266.0

Q ss_pred             CHHHHHHHHhCCcCCCceEEEe--------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~--------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      +|+++.|.+.+..+|+.+++-.        ..+++||+|.++++..++..|++                 +|+++++.|+
T Consensus        75 ~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-----------------lG~~~~~~VG  137 (691)
T KOG1256|consen   75 LTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-----------------LGVKEDSKVG  137 (691)
T ss_pred             ccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCceEE
Confidence            4789999999999999999964        23789999999999999999998                 6999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec-cchHHHHHHHHhh--cC-Cc-ccccCCCC
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYREVLQNVASK--SG-AK-FSLIPPVP  147 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~--~~-~~-~~~~~~~~  147 (372)
                      |++.|++||+++.+||...|.++||++.+++++.+.++++++..+++|++ +...+.+.+....  .+ .+ ++.+....
T Consensus       138 Iy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~  217 (691)
T KOG1256|consen  138 IYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPS  217 (691)
T ss_pred             EeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999 4555555554332  21 11 22222211


Q ss_pred             C-CCC---C--------c---ccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH---HHhhc---
Q 017382          148 N-VSS---E--------T---TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM---LTEAW---  206 (372)
Q Consensus       148 ~-~~~---~--------~---~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~---  206 (372)
                      . ...   .        .   ...............|+|.|.|+|||||||.||||++||+|++..+..   .....   
T Consensus       218 ~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~  297 (691)
T KOG1256|consen  218 DELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAK  297 (691)
T ss_pred             hhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhccccc
Confidence            0 000   0        0   001111111124667899999999999999999999999999986543   21111   


Q ss_pred             ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHh
Q 017382          207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG  286 (372)
Q Consensus       207 ~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~  286 (372)
                      .....|++++++|++|++......+. ++.|+++.+.. .|+..+.+.          +++.+||.+.++|.+|+++.+.
T Consensus       298 ~~~~~dv~lSyLPLAHi~er~~~~~~-~~~G~~IgF~~-gD~~~l~~d----------lk~lkPT~f~~VPRVl~riye~  365 (691)
T KOG1256|consen  298 ATVGDDVYLSYLPLAHIFERVVELYT-FYIGAKIGFAR-GDILKLTDD----------LKELKPTVFPGVPRVLERIYEG  365 (691)
T ss_pred             ccccCceEEEeCcHHHHHHHHHHHhH-hhcccEEEEec-CChHHHHHH----------HHHhCCcEEeccHhHHHHHHHH
Confidence            22346999999999999999865554 68999999988 477777777          7788999999999999998875


Q ss_pred             hhhcc----------------HHH---------------------HHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCC
Q 017382          287 YEAMD----------------TEL---------------------QAASASAAKQLRLMMCGSSALPLPVMQQWETITGH  329 (372)
Q Consensus       287 ~~~~~----------------~~~---------------------~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~  329 (372)
                      ..+..                .++                     ...+.....++|.+++|++|+++++...++..+|+
T Consensus       366 I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~  445 (691)
T KOG1256|consen  366 IQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGC  445 (691)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCc
Confidence            32100                000                     11233345789999999999999999999999999


Q ss_pred             ccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          330 RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       330 ~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +|+++||+||+++.++.....+...++||.|+|++++|++|.
T Consensus       446 ~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dv  487 (691)
T KOG1256|consen  446 RVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDV  487 (691)
T ss_pred             eeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEech
Confidence            999999999998655544444558899999999999999874

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.7e-43  Score=343.22  Aligned_cols=334  Identities=24%  Similarity=0.363  Sum_probs=272.7

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.+.++++++|+++|+.++++++||+||.+++.++|+.|.+                 .|+++||+|+++++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~-----------------~g~~~~~~V~i~~~n~~~~   63 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRG-----------------LGLARGERVAIYLDKRLET   63 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHHH
Confidence            36788999999999999999999999999999999999999998                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--CcccccCCCCCCC-------CC
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNVS-------SE  152 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~  152 (372)
                      +++++||+++|++++|+++.++.+++.++++++++++++++++....+.+......  ...+.+.......       ..
T Consensus        64 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (515)
T TIGR03098        64 VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSW  143 (515)
T ss_pred             HHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccH
Confidence            99999999999999999999999999999999999999998876655544433221  1111111111000       00


Q ss_pred             cccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~  232 (372)
                      .................+++++|+|||||||.||+|.+||+++...+......+.+..+|++++.+|++|..++. .++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~  222 (515)
T TIGR03098       144 PKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFN-QLTT  222 (515)
T ss_pred             HHhhccccccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHH-HHHH
Confidence            000000011112233457899999999999999999999999999888888888889999999999999999986 5888


Q ss_pred             HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      ++..|+++++.+.++++.+++.          ++++++|++.++|+++..+.+..         ....+++++|.+++||
T Consensus       223 ~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~~~l~~~~~~g  283 (515)
T TIGR03098       223 AFYVGATVVLHDYLLPRDVLKA----------LEKHGITGLAAVPPLWAQLAQLD---------WPESAAPSLRYLTNSG  283 (515)
T ss_pred             HHHcCCEEEEcCCCCHHHHHHH----------HHHcCCceEecChHHHHHHHhcc---------cCCCCccceEEEEecC
Confidence            9999999999999999999998          78899999999999999887631         1123568999999999


Q ss_pred             CCCCHHHHHHHHHHh-CCccccccccccccccccCCCC-CCCCCCcccccCCCceEEEeecC
Q 017382          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++++.+.+.+.+ +..+++.||+||++........ ...+.+++|+|++|++++|+|.+
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~  345 (515)
T TIGR03098       284 GAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLRED  345 (515)
T ss_pred             CcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCC
Confidence            999999999999988 7889999999998765443222 24567899999999999999853

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-43  Score=350.27  Aligned_cols=335  Identities=19%  Similarity=0.237  Sum_probs=259.4

Q ss_pred             HHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++.+.++++.+|+++|+++      ..+++||+||.+++.++|+.|++                 +|+++||+|+++++|
T Consensus        56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  118 (629)
T PRK10524         56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-----------------LGVQRGDRVLIYMPM  118 (629)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence            5567788888999999986      23689999999999999999999                 599999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhc---CCcccccCC
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP  145 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~  145 (372)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+.....   ...++.+..
T Consensus       119 ~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~  198 (629)
T PRK10524        119 IAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDR  198 (629)
T ss_pred             CHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999997642         23333332211   112222211


Q ss_pred             CCC-CC---C-Ccccc---cccc--cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH-HHhhcccCCCCeE
Q 017382          146 VPN-VS---S-ETTVF---DQSQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQF  214 (372)
Q Consensus       146 ~~~-~~---~-~~~~~---~~~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~  214 (372)
                      ... ..   . .....   ....  ........++++++|+|||||||.||||+++|.+++..... ....++++++|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~  278 (629)
T PRK10524        199 GLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETF  278 (629)
T ss_pred             CCCCcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            100 00   0 00000   0000  00111235689999999999999999999999997654433 4455678899999


Q ss_pred             EEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhc
Q 017382          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (372)
Q Consensus       215 l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  290 (372)
                      ++..|++|..+....++.+++.|+++++.+.    +++..+++.          ++++++|+++++|++++.+.+...  
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~--  346 (629)
T PRK10524        279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRI----------VEKYKVNRMFSAPTAIRVLKKQDP--  346 (629)
T ss_pred             EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHH----------HHHcCceEEEeCHHHHHHHHhcCc--
Confidence            9999999998876678899999999998763    467888888          889999999999999998876421  


Q ss_pred             cHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccC-CC---CCCCCCCcccccCCCceE
Q 017382          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PL---RGARKAGTVGNPLPGVQV  366 (372)
Q Consensus       291 ~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~---~~~~~~~svG~p~~g~~i  366 (372)
                          ......++++||.+++||+++++++.+++.+.++.++++.||+||++..+.. ..   ....+.+++|+|++|+++
T Consensus       347 ----~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~  422 (629)
T PRK10524        347 ----ALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNV  422 (629)
T ss_pred             ----ccccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceE
Confidence                1123457889999999999999999999999999999999999999843322 11   123456899999999999


Q ss_pred             EEeec
Q 017382          367 SMILL  371 (372)
Q Consensus       367 ~Ivd~  371 (372)
                      +|+|.
T Consensus       423 ~i~d~  427 (629)
T PRK10524        423 KLLNE  427 (629)
T ss_pred             EEEeC
Confidence            99997

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.3e-43  Score=339.97  Aligned_cols=320  Identities=24%  Similarity=0.345  Sum_probs=267.5

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+.+.|.++++++||++|++++++.+||+||.+++.++|+.|.+                 .|+++||+|+++++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~~~~v~i~~~~~~~   64 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAA-----------------LGVKKGDRVALLMKNGME   64 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence            789999999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++|++++|++++|+++..+.+++.+++++++++.+++++...........   .   .+.....   .    ....
T Consensus        65 ~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~---~~~~~~~---~----~~~~  131 (483)
T PRK03640         65 MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS---V---KFAELMN---G----PKEE  131 (483)
T ss_pred             HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc---c---cHHHHhh---c----cccc
Confidence            999999999999999999999999999999999999999998765544332210   0   0000000   0    0000


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++++|||||||.||+|.+||.++...+......++++.+|++++.+|++|..++. .++.++..|+++
T Consensus       132 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~  210 (483)
T PRK03640        132 AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRV  210 (483)
T ss_pred             CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEE
Confidence            1111234568999999999999999999999999988877777778899999999999999999986 478889999999


Q ss_pred             EEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      ++.+.+++..+++.          ++++++|++.++|+++..+.+.+...         ....++|.+++||+++++++.
T Consensus       211 ~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~~~---------~~~~~lr~~~~~g~~~~~~~~  271 (483)
T PRK03640        211 VLVEKFDAEKINKL----------LQTGGVTIISVVSTMLQRLLERLGEG---------TYPSSFRCMLLGGGPAPKPLL  271 (483)
T ss_pred             EecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcCcc---------ccCCcceEEEEcCCCCCHHHH
Confidence            99999999999998          78899999999999999998653210         234689999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccC--CCCCCCCCCcccccCCCceEEEeec
Q 017382          321 QQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~--~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +.+.+. |+++++.||+||++..+..  ........+++|+|+++++++|+|.
T Consensus       272 ~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~  323 (483)
T PRK03640        272 EQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD  323 (483)
T ss_pred             HHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecC
Confidence            988874 9999999999998754332  2222456789999999999999985

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=6.7e-43  Score=342.14  Aligned_cols=335  Identities=23%  Similarity=0.304  Sum_probs=270.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      ++.+.+.++++.+|+++|++.      .++.+||+||.+++.++|..|++                 .|+++||+|++++
T Consensus        23 ~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~   85 (538)
T TIGR03208        23 TINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-----------------LGVGRGDVVSFQL   85 (538)
T ss_pred             cHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence            678889999999999999985      24689999999999999999998                 4999999999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcCC--cccccCCCCC
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA--KFSLIPPVPN  148 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~  148 (372)
                      +|+++++++++||+++|++++|+++..+.+++.++++.++++++++++...     +...........  .++..... .
T Consensus        86 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  164 (538)
T TIGR03208        86 PNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD-G  164 (538)
T ss_pred             CCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC-C
Confidence            999999999999999999999999999999999999999999999987542     222222221111  11111110 0


Q ss_pred             CCCCccc---c--ccccc----ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecC
Q 017382          149 VSSETTV---F--DQSQA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLP  219 (372)
Q Consensus       149 ~~~~~~~---~--~~~~~----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p  219 (372)
                      .......   .  .....    .......++++++|+|||||||.||+|+++|+++...+......++++.+|++++.+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p  244 (538)
T TIGR03208       165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP  244 (538)
T ss_pred             CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCC
Confidence            0000000   0  00000    1112346789999999999999999999999999999888888888999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (372)
Q Consensus       220 l~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  299 (372)
                      ++|..++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+....        ..
T Consensus       245 l~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~~--------~~  306 (538)
T TIGR03208       245 MAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL----------IRETGVTFTMASTPFLTDLCRAVKE--------SG  306 (538)
T ss_pred             chhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH----------HHHhCCeEEecCHHHHHHHHhchhc--------cC
Confidence            99999987778899999999999999999999998          7889999999999999988765321        22


Q ss_pred             hhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCC--CCCCCcccccCCCceEEEeecC
Q 017382          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       300 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+++++|.+++||+++++++.+++.+.+|+++++.||+||++.+.+.....  .....++|+|++|++++|+|++
T Consensus       307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~  381 (538)
T TIGR03208       307 APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN  381 (538)
T ss_pred             CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCC
Confidence            467899999999999999999999998999999999999998665533221  2234679999999999999864

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-43  Score=341.96  Aligned_cols=336  Identities=22%  Similarity=0.251  Sum_probs=276.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.+.++++.+|+++|+.++++.+||+||.+++.++|+.|.+.                 |+++||+|+++++|++++
T Consensus        12 ~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~~~~V~l~~~~~~~~   74 (523)
T PRK08316         12 TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDL-----------------GLKKGDRVAALGHNSDAY   74 (523)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHH
Confidence            578899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCC---CC-CCcc---
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN---VS-SETT---  154 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~---  154 (372)
                      +++++||+++|++++|+++.++.+++.++++++++++++++++....+.+.................   .. ....   
T Consensus        75 ~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (523)
T PRK08316         75 ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFAD  154 (523)
T ss_pred             HHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHH
Confidence            9999999999999999999999999999999999999999988776665543322211111100000   00 0000   


Q ss_pred             ccccc-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 017382          155 VFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (372)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~  233 (372)
                      ..... ..........+++++++|||||||.||+|.+||.+++.........++++++|+++..+|++|..++...++.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~  234 (523)
T PRK08316        155 WAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPY  234 (523)
T ss_pred             HHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHH
Confidence            00000 00112344568899999999999999999999999999888888888899999999999999999986666778


Q ss_pred             HHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      +..|+++++.+..+++.+++.          ++++++|++.++|+++..+.+...        ....+++++|.+++||+
T Consensus       235 ~~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gg~  296 (523)
T PRK08316        235 LYVGATNVILDAPDPELILRT----------IEAERITSFFAPPTVWISLLRHPD--------FDTRDLSSLRKGYYGAS  296 (523)
T ss_pred             HhcCceEEEecCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHcCcc--------cccCCcccceEEEEcCC
Confidence            999999999988999999998          788999999999999999887522        23456789999999999


Q ss_pred             CCCHHHHHHHHHHh-CCccccccccccccccccCCC--CCCCCCCcccccCCCceEEEeecC
Q 017382          314 ALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       314 ~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++.++.+.+++.+ +.++++.||+||++.+.....  +.....+++|+|+++++++|+|.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~  358 (523)
T PRK08316        297 IMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDD  358 (523)
T ss_pred             cCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCC
Confidence            99999999999988 789999999999987655322  223456899999999999999853

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-43  Score=339.83  Aligned_cols=322  Identities=21%  Similarity=0.289  Sum_probs=265.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      |++.+.|.++++.+||++|++++++++||.||.++++++|+.|.+.                 | .+|++|+++++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------~-~~~~~v~i~~~~~~~   62 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEK-----------------E-SKNKTIAILLENRIE   62 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHh-----------------C-CCCCEEEEEcCCCHH
Confidence            8899999999999999999999999999999999999999999984                 6 479999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|+++.++++++.++++.++++++|++......+...    ...++.+......     ......
T Consensus        63 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~  133 (487)
T PRK07638         63 FLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE----EGRVIEIDEWKRM-----IEKYLP  133 (487)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc----cceEEEehhhhhh-----hhhccc
Confidence            9999999999999999999999999999999999999999998654433211    1111111110000     000001


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      .........+++++|+|||||||.||+|+++|++++.++......++++++|+++...|++|..++. .++.++..|+++
T Consensus       134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~-~~~~~l~~g~~~  212 (487)
T PRK07638        134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLY-GAISTLYVGQTV  212 (487)
T ss_pred             cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHH-HHHHHHccCcEE
Confidence            1111122346789999999999999999999999999888888888899999999999999998874 688899999999


Q ss_pred             EEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      ++.+.+++..+++.          ++++++|++.++|+++..+.+..           . ...+.+.++++|++++.+..
T Consensus       213 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~-----------~-~~~~~~~~~~~G~~l~~~~~  270 (487)
T PRK07638        213 HLMRKFIPNQVLDK----------LETENISVMYTVPTMLESLYKEN-----------R-VIENKMKIISSGAKWEAEAK  270 (487)
T ss_pred             EEcCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCc-----------C-cCCceeEEEEcCCCCCHHHH
Confidence            99999999999998          78899999999999999987641           1 13455667889999999999


Q ss_pred             HHHHHHh-CCccccccccccccccccCC-CCCCCCCCcccccCCCceEEEeecC
Q 017382          321 QQWETIT-GHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       321 ~~~~~~~-~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++.+.+ +..+++.||+||++.++... .....+.+++|+|++|++++|+|.+
T Consensus       271 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  324 (487)
T PRK07638        271 EKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEA  324 (487)
T ss_pred             HHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCC
Confidence            9999998 78999999999998665533 2234567899999999999999864

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.5e-43  Score=350.19  Aligned_cols=340  Identities=20%  Similarity=0.261  Sum_probs=252.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      |+++.|.++++++|+++|+...    +     +++||+|+.++++++|+.|.+                 .|+++||+|+
T Consensus        43 t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~V~  105 (660)
T PLN02430         43 TAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-----------------SGAEPGSRVG  105 (660)
T ss_pred             CHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            6889999999999999999632    1     357999999999999999999                 4999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-HHHHHHHhhcC--CcccccCCCCCC
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-EVLQNVASKSG--AKFSLIPPVPNV  149 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~  149 (372)
                      |+++|++||+++++||+++|++++|+++.++++++.+++++++++++|+++... +.+........  ..++.+......
T Consensus       106 i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  185 (660)
T PLN02430        106 IYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEE  185 (660)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChH
Confidence            999999999999999999999999999999999999999999999999987532 22222111111  111111110000


Q ss_pred             ------CCC---ccccc---c-c-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh-----cccCC
Q 017382          150 ------SSE---TTVFD---Q-S-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-----WEYTS  210 (372)
Q Consensus       150 ------~~~---~~~~~---~-~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-----~~~~~  210 (372)
                            ...   ....+   . . .........++++++|+|||||||.||||++||+++...+......     ..++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~  265 (660)
T PLN02430        186 ESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTH  265 (660)
T ss_pred             HhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCC
Confidence                  000   00000   0 0 0011122357899999999999999999999999999877665432     14678


Q ss_pred             CCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhc
Q 017382          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (372)
Q Consensus       211 ~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  290 (372)
                      +|++++++|++|+++... .+.++..|+++++.+. ++..+++.          ++++++|++.++|.+++.+.+.....
T Consensus       266 ~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~----------l~~~~pt~~~~vP~~~~~l~~~i~~~  333 (660)
T PLN02430        266 DDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDD----------LMELKPTLLAGVPRVFERIHEGIQKA  333 (660)
T ss_pred             CCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHH----------HHHhCCcEEEecHHHHHHHHHHHHHH
Confidence            999999999999999875 4556889999988754 67777777          77889999999999999887642110


Q ss_pred             ----cH---------------------------------HHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCcccc
Q 017382          291 ----DT---------------------------------ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE  333 (372)
Q Consensus       291 ----~~---------------------------------~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~  333 (372)
                          ..                                 ..........+++|.+++||+++++++.+.++...+..+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~  413 (660)
T PLN02430        334 LQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQ  413 (660)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeee
Confidence                00                                 00011111237899999999999999866555443468999


Q ss_pred             ccccccccccccCC-CCCCCCCCcccccCCCceEEEee
Q 017382          334 RYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       334 ~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      +||+||++++++.. .......+++|+|++|+++||+|
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d  451 (660)
T PLN02430        414 GYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEE  451 (660)
T ss_pred             ecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEE
Confidence            99999988655433 22234579999999999999987

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-43  Score=346.24  Aligned_cols=328  Identities=22%  Similarity=0.295  Sum_probs=254.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCc----------eeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQK----------SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR   70 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~----------~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~   70 (372)
                      +|+.+.+.++++++|+++|+++.+.          ++||+||.++++++|+.|.+                 .|+++||+
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-----------------~g~~~gd~   68 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-----------------AGIGRGMR   68 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCE
Confidence            4788899999999999999998554          89999999999999999999                 49999999


Q ss_pred             EEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc--hHHHHHHHHhhcCCcccccCCC--
Q 017382           71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPV--  146 (372)
Q Consensus        71 V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~--  146 (372)
                      |+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.  ..+.+...........+.+...  
T Consensus        69 V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  148 (552)
T PRK09274         69 AVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLL  148 (552)
T ss_pred             EEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccc
Confidence            999999999999999999999999999999999999999999999999999752  2222211100000011111110  


Q ss_pred             CCCCCCcccccc--cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHH
Q 017382          147 PNVSSETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH  224 (372)
Q Consensus       147 ~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  224 (372)
                      ............  ..........++++++|+|||||||.||+|++||+++...+......+++.++|+.++..|++|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  228 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF  228 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh
Confidence            000000000000  001112234568999999999999999999999999999988888888999999999999998764


Q ss_pred             HHHHHHHHHHHcCceEEEcC-------CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHh
Q 017382          225 GLFNALLAPLYAGATVEFMP-------KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (372)
Q Consensus       225 ~~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  297 (372)
                      +        +..|+++++.+       .+++..+++.          ++++++|+++++|+++..+.+...        .
T Consensus       229 ~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~--------~  282 (552)
T PRK09274        229 G--------PALGMTSVIPDMDPTRPATVDPAKLFAA----------IERYGVTNLFGSPALLERLGRYGE--------A  282 (552)
T ss_pred             h--------hhhCCeEEecCcccccccccCHHHHHHH----------HHHcCCeEEeccHHHHHHHHHHhh--------h
Confidence            3        34577877764       4578888888          888999999999999999987522        2


Q ss_pred             hhhhccCceEEEecCCCCCHHHHHHHHHHh--CCccccccccccccccccCCCCC----------CCCCCcccccCCCce
Q 017382          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAISNPLRG----------ARKAGTVGNPLPGVQ  365 (372)
Q Consensus       298 ~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~----------~~~~~svG~p~~g~~  365 (372)
                      ...+++++|.+++||+++++++.+.|.+.|  |+++++.||+||++.+++.....          .....++|+|+||++
T Consensus       283 ~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~  362 (552)
T PRK09274        283 NGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVE  362 (552)
T ss_pred             cCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCce
Confidence            334788999999999999999999999999  46999999999998654422111          122347999999999


Q ss_pred             EEEeec
Q 017382          366 VSMILL  371 (372)
Q Consensus       366 i~Ivd~  371 (372)
                      ++|+|.
T Consensus       363 ~~ivd~  368 (552)
T PRK09274        363 VRIIAI  368 (552)
T ss_pred             EEEEec
Confidence            999984

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=7.1e-43  Score=341.94  Aligned_cols=333  Identities=23%  Similarity=0.321  Sum_probs=271.5

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.|.++++.+||++|++++++.+||+||.+++.++|..|.+                 .|+++|++|+++++|+++
T Consensus        21 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~-----------------~gi~~g~~V~v~~~n~~~   83 (542)
T PRK06155         21 RTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAA-----------------AGVKRGDRVALMCGNRIE   83 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence            367889999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhc-C-CcccccCCCCCCCCC-----c
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS-G-AKFSLIPPVPNVSSE-----T  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-----~  153 (372)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++.+....+.+..... . ...+.+.........     .
T Consensus        84 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (542)
T PRK06155         84 FLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTA  163 (542)
T ss_pred             HHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchh
Confidence            99999999999999999999999999999999999999999987776665543221 1 111111111100000     0


Q ss_pred             ccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 017382          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (372)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~  233 (372)
                      ...............++++++|+|||||||.||+|+++|+++..........+++++++++++..|++|..++. .++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~~~  242 (542)
T PRK06155        164 PLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQA  242 (542)
T ss_pred             hhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHHHH
Confidence            00000000112234568999999999999999999999999998887777888899999999999999999986 57889


Q ss_pred             HHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      +..|+++++.+.+++..++..          ++++++|++.++|+++..+.+....        .....+++|.++.|| 
T Consensus       243 l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~l~~~~~g~-  303 (542)
T PRK06155        243 LLAGATYVLEPRFSASGFWPA----------VRRHGATVTYLLGAMVSILLSQPAR--------ESDRAHRVRVALGPG-  303 (542)
T ss_pred             HHcCceEEeeCCCCHHHHHHH----------HHHhCCcEEEchHHHHHHHHcCcCc--------cccccCceEEEEEcC-
Confidence            999999999999999999999          7889999999999999988765321        223557899887665 


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                       .++.+.+.|.+.+|.++++.||+||++.++.... ...+.+++|.|++|++++|+|.+
T Consensus       304 -~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~  360 (542)
T PRK06155        304 -VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVDEH  360 (542)
T ss_pred             -CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEEEECCC
Confidence             5788999999999999999999999987665432 24567889999999999999864

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-43  Score=339.37  Aligned_cols=331  Identities=18%  Similarity=0.267  Sum_probs=270.2

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      |++.+.+.++++.+|+++|++++++.+||.||.++++++|..|.+.                 |+++|++|+++++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~~~~v~i~~~~~~~   64 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHAR-----------------GIGQGDVVALLMKNSAA   64 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            6889999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccc-ccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF-DQS  159 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (372)
                      +++.++|++++|++++|+++..+.+++.++++.+++++++++++.......     ......++.... ....... ...
T Consensus        65 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~  138 (497)
T PRK06145         65 FLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-----ETPKIVIDAAAQ-ADSRRLAQGGL  138 (497)
T ss_pred             HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-----ccceEEecCccc-chhHHHhccCC
Confidence            999999999999999999999999999999999999999998765433211     111111111000 0000000 000


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCce
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  239 (372)
                      .........++++++++|||||||.||+|.+||+++...+......+++..+|+++...|++|..++....+.++..|++
T Consensus       139 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~  218 (497)
T PRK06145        139 EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGT  218 (497)
T ss_pred             CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCE
Confidence            01112234678999999999999999999999999987776666777889999999999999999887666778999999


Q ss_pred             EEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +++.+.+++..+++.          ++++++|++.++|+++..++....        ....+++++|.+++||+++++++
T Consensus       219 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~ll~~~~--------~~~~~~~~l~~~~~gG~~~~~~~  280 (497)
T PRK06145        219 LRIHREFDPEAVLAA----------IERHRLTCAWMAPVMLSRVLTVPD--------RDRFDLDSLAWCIGGGEKTPESR  280 (497)
T ss_pred             EEECCcCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHcCCC--------ccccccccceEEEecCCCCCHHH
Confidence            999999999999998          788999999999999999886522        12346688999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccCCC--CCCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETIT-GHRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.|.+.| +.++++.||+||++...+...  ....+.+++|+|+++++++|+|++
T Consensus       281 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~  336 (497)
T PRK06145        281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGA  336 (497)
T ss_pred             HHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCC
Confidence            99999988 678999999999986544221  122356789999999999999864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-43  Score=344.86  Aligned_cols=333  Identities=20%  Similarity=0.269  Sum_probs=255.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      |+.+.|.++++++|+++|++.  +++.+||+||.++++++|+.|.+                 .|+++||+|+++++|++
T Consensus        15 ~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~~~~   77 (540)
T PRK05857         15 TVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRA-----------------QSVSRGSRVLVISDNGP   77 (540)
T ss_pred             chHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-----------------hCcCCCCEEEEEcCCCH
Confidence            578899999999999999985  34689999999999999999999                 49999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhc-CCcccccCCCCCCCCCcccccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS-GAKFSLIPPVPNVSSETTVFDQ  158 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  158 (372)
                      ++++++|||+++|++++|+++.++.+++.++++.++++.+++++........+.... ....+.++..............
T Consensus        78 e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (540)
T PRK05857         78 ETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDA  157 (540)
T ss_pred             HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccc
Confidence            999999999999999999999999999999999999999999976532221111100 0111111110000000000000


Q ss_pred             cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHHHH
Q 017382          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPL  234 (372)
Q Consensus       159 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l  234 (372)
                      ..........++++++++|||||||.||||.++|+++..+......    .+....+++++..+|++|..+++ ..+.++
T Consensus       158 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l  236 (540)
T PRK05857        158 ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCL  236 (540)
T ss_pred             cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHh
Confidence            0001122345689999999999999999999999999876544322    23556788999999999999986 577789


Q ss_pred             HcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCC
Q 017382          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (372)
Q Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~  314 (372)
                      +.|+++++ ...++..+++.          ++++++|+++++|+++..+.+....        ...+++++|.+++||++
T Consensus       237 ~~G~~~v~-~~~~~~~~~~~----------i~~~~it~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG~~  297 (540)
T PRK05857        237 MHGGLCVT-GGENTTSLLEI----------LTTNAVATTCLVPTLLSKLVSELKS--------ANATVPSLRLVGYGGSR  297 (540)
T ss_pred             hcceeEEe-cCCChhHHHHH----------HHhcCcceEEeChHHHHHHHhcccc--------CCCcCccceEEEEcCcc
Confidence            99998876 45678888888          8899999999999999999875321        23467899999999999


Q ss_pred             CCHHHHHHHHHHhCCccccccccccccccccCCC-CC----CCCCCcccccCCCceEEEeecC
Q 017382          315 LPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RG----ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~----~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++....+ |.+.+|.++++.||+||++....... ..    ..+.+++|+|++|++++|+|.|
T Consensus       298 ~~~~~~~-~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~  359 (540)
T PRK05857        298 AIAADVR-FIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATD  359 (540)
T ss_pred             CCchhHH-HHHHhCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECcc
Confidence            9887775 55677999999999999985433211 11    2356899999999999999854

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-43  Score=353.96  Aligned_cols=321  Identities=20%  Similarity=0.246  Sum_probs=259.1

Q ss_pred             HHHHHHHHhCCc--CCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSM--ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~--~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      |+.+.+.++++.  +||++|++.. ..+||+||.++++++|+.|.+                 .|+++||+|+++++|++
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~-----------------~g~~~g~~V~i~~~~~~   66 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRN-----------------RGLSSGDRVLLCLPDSP   66 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCH
Confidence            577888888875  7999999874 489999999999999999999                 49999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (372)
                      +++++++||+++|++++|++|.++.+++.+++++++++++|++....+.+...      .......  ....   . ...
T Consensus        67 ~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~--~~~~---~-~~~  134 (705)
T PRK06060         67 DLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS------RVAEAAE--LMSE---A-ARV  134 (705)
T ss_pred             HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc------ccchhhh--hhhh---c-ccc
Confidence            99999999999999999999999999999999999999999987654332110      0000000  0000   0 000


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH-hhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                      .........++++++|+|||||||.||+|+++|+++...+.... ..+.+...|++++..|++|..++...++.++..|+
T Consensus       135 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~  214 (705)
T PRK06060        135 APGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGG  214 (705)
T ss_pred             CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCC
Confidence            00011123568899999999999999999999999988776654 45778899999999999999887666788899999


Q ss_pred             eEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      ++++.+ .+++..++..          ++++++|+++++|+++..+++...          ..+++++|.+++||+++++
T Consensus       215 ~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~----------~~~~~slr~i~~gGe~l~~  274 (705)
T PRK06060        215 SAVINSAPVTPEAAAIL----------SARFGPSVLYGVPNFFARVIDSCS----------PDSFRSLRCVVSAGEALEL  274 (705)
T ss_pred             EEEEeCCCCCHHHHHHH----------HHhcCCeEEeeHHHHHHHHHHhcc----------cccccceeEEEEecCcCCH
Confidence            999987 4677777766          788999999999999998876421          2356899999999999999


Q ss_pred             HHHHHHHHHh-CCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.+.|.+.| +.+++|.||+||++...........+.+++|+|+++++++|+|.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~  330 (705)
T PRK06060        275 GLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPD  330 (705)
T ss_pred             HHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCC
Confidence            9999999988 589999999999985544332223456889999999999999864

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=9.8e-43  Score=340.14  Aligned_cols=337  Identities=19%  Similarity=0.204  Sum_probs=268.9

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.+.++++.+|+++|++++++.+||+||.++++++|..|.+                 +|+++||+|+++++|+++
T Consensus        23 ~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~~~~~   85 (527)
T TIGR02275        23 KPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTK-----------------LGIGQGDTAVVQLPNIAE   85 (527)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence            367889999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC-CcccccCCCCC-CCCCc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPN-VSSET  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~-~~~~~  153 (372)
                      ++++++|++++|++++++++..+.+++.++++.+++++++++....     +.......... .....+..... .....
T Consensus        86 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (527)
T TIGR02275        86 FYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELF  165 (527)
T ss_pred             HHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhh
Confidence            9999999999999999999999999999999999999999986531     11122211111 11111111000 00000


Q ss_pred             ccc-cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHH
Q 017382          154 TVF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (372)
Q Consensus       154 ~~~-~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~  231 (372)
                      ... ............++++++|+|||||||.||+|++||.++..++......+.+..+|++++.+|++|.+++.. .++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~  245 (527)
T TIGR02275       166 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGAL  245 (527)
T ss_pred             HHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence            000 000111123456789999999999999999999999999998888888888999999999999999998864 477


Q ss_pred             HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      .++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...        ....+++++|.+++|
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~--------~~~~~~~~lr~~~~g  307 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPL----------IERHKVTVTALVPPAVALWMQAAS--------KSRYDLSSLKLLQVG  307 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHH----------HHHhCCeEEEecHHHHHHHHhCcc--------ccCCCccceEEEEEc
Confidence            88999999999998999998888          788999999999999998877532        123467899999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccCC-CCCCCCCCcccccC-CCceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~-~g~~i~Ivd~d  372 (372)
                      |+++++++.+.+.+.+|.++++.||+||++...... .......+++|+|+ ++++++|+|.+
T Consensus       308 G~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~  370 (527)
T TIGR02275       308 GAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDH  370 (527)
T ss_pred             CCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCC
Confidence            999999999999999999999999999966433321 11233457899999 58999999864

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2e-42  Score=340.19  Aligned_cols=330  Identities=22%  Similarity=0.290  Sum_probs=259.6

Q ss_pred             HHHHHHHhCCcCCCceEEEeCC--ceeeHHHHHHHHHHHHHHHhh-CCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            3 VFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCS-NDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         3 ~~~~l~~~a~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~-~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      +.+.+... ..+|+++|++++.  .++||+||.++++++|+.|.+ .                 |+++||+|+++++|++
T Consensus        42 ~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~-----------------G~~~gd~V~i~~~n~~  103 (560)
T PLN02574         42 AVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVM-----------------GVRQGDVVLLLLPNSV  103 (560)
T ss_pred             HHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCcc
Confidence            33445554 5789999999753  479999999999999999997 5                 9999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCC----Cccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS----ETTV  155 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  155 (372)
                      +++++++||+++|++++|++|..+.+++.++++.+++++++++++..+.+...    ....+.+........    ....
T Consensus       104 ~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  179 (560)
T PLN02574        104 YFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL----GVPVIGVPENYDFDSKRIEFPKF  179 (560)
T ss_pred             hHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc----CCcEEecCcccccccCccCcccH
Confidence            99999999999999999999999999999999999999999998765554332    111111111000000    0000


Q ss_pred             ---c-cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hccc-CCCCeEEEecCchhHHHH
Q 017382          156 ---F-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEY-TSADQFLHCLPLHHVHGL  226 (372)
Q Consensus       156 ---~-~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~-~~~d~~l~~~pl~~~~~~  226 (372)
                         . ............++++++|+|||||||.||+|++||+++...+..+..    .+.. ...++++..+|++|..++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~  259 (560)
T PLN02574        180 YELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGL  259 (560)
T ss_pred             HHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHH
Confidence               0 000011122345689999999999999999999999999887766543    1222 356888999999999998


Q ss_pred             HHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCce
Q 017382          227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR  306 (372)
Q Consensus       227 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr  306 (372)
                      ...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...       .....+++++|
T Consensus       260 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~-------~~~~~~~~~lr  322 (560)
T PLN02574        260 SLFVVGLLSLGSTIVVMRRFDASDMVKV----------IDRFKVTHFPVVPPILMALTKKAK-------GVCGEVLKSLK  322 (560)
T ss_pred             HHHHHHHHhcCCEEEEecCCCHHHHHHH----------HHHcCCeEEecCCHHHHHHHhCcc-------ccccCccccce
Confidence            7667788899999999999999999998          888999999999999999987521       11235688999


Q ss_pred             EEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCC--CCCCCCCCcccccCCCceEEEeec
Q 017382          307 LMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       307 ~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~--~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      .+++||++++++++++|.+.+ +..+++.||+||++.+.+..  .....+.+++|+|++|++++|+|.
T Consensus       323 ~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~  390 (560)
T PLN02574        323 QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDW  390 (560)
T ss_pred             EEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeC
Confidence            999999999999999999988 78999999999998655422  222345689999999999999994

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=3.8e-42  Score=337.55  Aligned_cols=335  Identities=22%  Similarity=0.323  Sum_probs=267.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC-ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      |+.+.+.++++.+||++|++++. +.+||+||.++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus        24 ~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~-----------------~G~~~gd~V~i~~~n~~~   86 (547)
T PRK06087         24 SLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLA-----------------KGIEPGDRVAFQLPGWCE   86 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence            57788999999999999999865 899999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc-----hHHHHHHHHhhcCC--cccccCCCCCCCCCc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-----YREVLQNVASKSGA--KFSLIPPVPNVSSET  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  153 (372)
                      ++++++||+++|++++|+++.++.+++.++++.++++++++++.     ..+.+.........  ..+.+..........
T Consensus        87 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (547)
T PRK06087         87 FTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSL  166 (547)
T ss_pred             HHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCcc
Confidence            99999999999999999999999999999999999999999753     22333333222221  111111111000000


Q ss_pred             cc---cccc-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHH
Q 017382          154 TV---FDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA  229 (372)
Q Consensus       154 ~~---~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~  229 (372)
                      ..   .... ..........+++++|+|||||||.||+|.++|.++..........+.+.++|++++..|++|..+++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~  246 (547)
T PRK06087        167 SLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHG  246 (547)
T ss_pred             CHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHH
Confidence            00   0000 0011223456899999999999999999999999999888887777888999999999999999998878


Q ss_pred             HHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEE
Q 017382          230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (372)
Q Consensus       230 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~  309 (372)
                      ++.+++.|+++++.+.+++..+++.          ++++++|+++++|+.+..+++...        ....+++++|.++
T Consensus       247 ~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~--------~~~~~~~~lr~i~  308 (547)
T PRK06087        247 VTAPFLIGARSVLLDIFTPDACLAL----------LEQQRCTCMLGATPFIYDLLNLLE--------KQPADLSALRFFL  308 (547)
T ss_pred             HHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCCEEeccHHHHHHHHhccc--------cCCCCCCCeEEEE
Confidence            8899999999999999999999998          788999999988888777766422        1234678999999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCC--CCCCCcccccCCCceEEEeecC
Q 017382          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       310 ~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +||+++++++.+.+.+. |+++++.||+||++.+.......  ....+++|+|++|++++|+|.+
T Consensus       309 ~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  372 (547)
T PRK06087        309 CGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEA  372 (547)
T ss_pred             EcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCC
Confidence            99999999999988765 99999999999998765533322  2345679999999999999864

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-42  Score=337.25  Aligned_cols=334  Identities=24%  Similarity=0.310  Sum_probs=270.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      |+.+.|.++++++|+++|++++++.+||.||.+++.+++..|.+                 .|+++|++|+++++|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~~~~V~i~~~~~~~~   75 (524)
T PRK06188         13 TYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEA-----------------LGLGTGDAVALLSLNRPEV   75 (524)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHH
Confidence            67788999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc-hHHHHHHHHhhcCC--cccccCCCCCCCCCccccc-
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREVLQNVASKSGA--KFSLIPPVPNVSSETTVFD-  157 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-  157 (372)
                      ++.++||+++|++++|+++..+.+++.++++.++++.+++++. ..............  ..+.+.............. 
T Consensus        76 ~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (524)
T PRK06188         76 LMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAK  155 (524)
T ss_pred             HHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhc
Confidence            9999999999999999999999999999999999999999876 33333332222211  1111111110000000000 


Q ss_pred             ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcC
Q 017382          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (372)
Q Consensus       158 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G  237 (372)
                      ...........++++++|+|||||||.||+|.++|.++...+......+.+..+|++++..|++|..++.  ++.+++.|
T Consensus       156 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G  233 (524)
T PRK06188        156 FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRG  233 (524)
T ss_pred             cCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcC
Confidence            0000111223456799999999999999999999999999988888888999999999999999998874  57789999


Q ss_pred             ceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      +++++.+.+++..+++.          ++++++|++.++|+++..+++....        ...+++++|.+++||+++++
T Consensus       234 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~--------~~~~l~~lr~~~~gg~~~~~  295 (524)
T PRK06188        234 GTVIVLAKFDPAEVLRA----------IEEQRITATFLVPTMIYALLDHPDL--------RTRDLSSLETVYYGASPMSP  295 (524)
T ss_pred             CEEEEcCCCCHHHHHHH----------HHHhCCEEEEehHHHHHHHHhCcCc--------cCCCCcceeEEEEcCCCCCH
Confidence            99999999999999988          7889999999999999999876321        23467899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccCCCC------CCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLR------GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~------~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +..+.+.+.++..+++.||+||++..++....      .....+++|+|++|++++|+|++
T Consensus       296 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~  356 (524)
T PRK06188        296 VRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDED  356 (524)
T ss_pred             HHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCC
Confidence            99999998899999999999999755442211      12356789999999999999864

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5e-42  Score=337.59  Aligned_cols=337  Identities=23%  Similarity=0.274  Sum_probs=268.6

Q ss_pred             CHHHHHHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +++.+.|.+.++.+|+++|+++  +++++||+||.++++++|+.|.+.                 |+++||+|+++++|+
T Consensus        16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~g~~V~i~~~~~   78 (559)
T PRK08315         16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLAL-----------------GIEKGDRVGIWAPNV   78 (559)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCC
Confidence            4688999999999999999987  567899999999999999999984                 999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC---------------C
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG---------------A  138 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~---------------~  138 (372)
                      ++++++++||+++|++++|+++..+.+++..+++++++++++++++..     +.+.+......               .
T Consensus        79 ~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (559)
T PRK08315         79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELR  158 (559)
T ss_pred             hHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCce
Confidence            999999999999999999999999999999999999999999987532     22222211110               0


Q ss_pred             cccccCCCCC--CCCCccccc-------ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccC
Q 017382          139 KFSLIPPVPN--VSSETTVFD-------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT  209 (372)
Q Consensus       139 ~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~  209 (372)
                      ..........  .........       ...........++++++++|||||||.||+|.+||+++..++......+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~  238 (559)
T PRK08315        159 RVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLT  238 (559)
T ss_pred             eEEeecccCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCC
Confidence            0000000000  000000000       0000112234568899999999999999999999999999888888888999


Q ss_pred             CCCeEEEecCchhHHHHHHHHHHHHHcCceEEE-cCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh
Q 017382          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEF-MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (372)
Q Consensus       210 ~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  288 (372)
                      .+|+++..+|++|..+++..++.++..|+++++ ...+++..+++.          ++++++|+++++|+++..++... 
T Consensus       239 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~~~~~~-  307 (559)
T PRK08315        239 EEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA----------VEEERCTALYGVPTMFIAELDHP-  307 (559)
T ss_pred             CCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH----------HHHcCCeEEecchHHHHHHHhCc-
Confidence            999999999999999998888999999999984 456889999888          78899999999999998887642 


Q ss_pred             hccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCC-ccccccccccccccccCCCCC---CCCCCcccccCCCc
Q 017382          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRG---ARKAGTVGNPLPGV  364 (372)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~---~~~~~svG~p~~g~  364 (372)
                             .....+++++|.+++||++++.++++.+.+.++. ++++.||+||++.+++.....   ..+..++|+|++|+
T Consensus       308 -------~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~  380 (559)
T PRK08315        308 -------DFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHL  380 (559)
T ss_pred             -------ccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCc
Confidence                   1223467899999999999999999999998875 499999999998765533221   23568999999999


Q ss_pred             eEEEeecC
Q 017382          365 QVSMILLL  372 (372)
Q Consensus       365 ~i~Ivd~d  372 (372)
                      +++|+|.+
T Consensus       381 ~v~i~d~~  388 (559)
T PRK08315        381 EVKIVDPE  388 (559)
T ss_pred             EEEEEcCc
Confidence            99999864

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-42  Score=335.72  Aligned_cols=325  Identities=21%  Similarity=0.295  Sum_probs=261.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+++.+.++++.+|+++|++++++.+||+||.++++++|+.|.+.                 |+++||+|+++++|+++
T Consensus        35 ~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~-----------------gi~~g~~V~i~~~~~~~   97 (516)
T PRK13383         35 TNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRD-----------------GVAPGRAVGVMCRNGRG   97 (516)
T ss_pred             CcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhc-----------------CCCCCCEEEEECCCCHH
Confidence            4678889999999999999999999999999999999999999984                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++|++++|++++|+++.++.+++.+++++++++.+++++...+.+.....    ....+.....     .. ... 
T Consensus        98 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~-----~~-~~~-  166 (516)
T PRK13383         98 FVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD----AVAVIDPATA-----GA-EES-  166 (516)
T ss_pred             HHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc----ceEEeccchh-----hh-hcC-
Confidence            999999999999999999999999999999999999999999876655443321    1111111000     00 000 


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHH--HHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID--AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~--~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                        .......++.++|+|||||||.||+|.++|....  .........+++..+|+++..+|++|.+++. .++.++..|+
T Consensus       167 --~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~  243 (516)
T PRK13383        167 --GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGG  243 (516)
T ss_pred             --CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCC
Confidence              0011234567899999999999999999997432  1122233455778899999999999999986 4777899999


Q ss_pred             eEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      ++++.+.+++..+++.          ++++++|.+.++|+++..+.+.....      ....+++++|.+++||++++++
T Consensus       244 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~gG~~l~~~  307 (516)
T PRK13383        244 TVLTHRHFDAEAALAQ----------ASLHRADAFTAVPVVLARILELPPRV------RARNPLPQLRVVMSSGDRLDPT  307 (516)
T ss_pred             EEEECCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHhccccc------cccCCCCceEEEEECCCCCCHH
Confidence            9999999999999988          78899999999999999987642210      0123568999999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccCCC-CCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.|.+.||.++++.||+||++..+.... ......+++|+|+||++++|+|.+
T Consensus       308 ~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  362 (516)
T PRK13383        308 LGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRN  362 (516)
T ss_pred             HHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCC
Confidence            999999999999999999999986554322 223456889999999999999853

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-42  Score=335.32  Aligned_cols=338  Identities=22%  Similarity=0.251  Sum_probs=261.3

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC--ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      ++.+.+..+++++|+++|+++++  +.+||+||.++++++|+.|.+                 .|+++||+|+++++|++
T Consensus        17 ~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~gd~V~i~~~n~~   79 (534)
T PRK05852         17 RIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTR-----------------SGLLPGDRVALRMGSNA   79 (534)
T ss_pred             cHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCcH
Confidence            57788999999999999998743  579999999999999999999                 49999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCC-----CCCCCc-
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP-----NVSSET-  153 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-  153 (372)
                      +++++++||+++|++++|+++.++.+++.++++.++++++|++....................+....     ...... 
T Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (534)
T PRK05852         80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLD  159 (534)
T ss_pred             HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccc
Confidence            99999999999999999999999999999999999999999886432211100000000000110000     000000 


Q ss_pred             ccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 017382          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (372)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~  233 (372)
                      ................++.++|+|||||||.||+|.++|+++...+......+.++.+|+++++.|++|..++...++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  239 (534)
T PRK05852        160 AATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLAT  239 (534)
T ss_pred             cccCCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHH
Confidence            00000000011112246889999999999999999999999999988888888899999999999999999998888999


Q ss_pred             HHcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          234 LYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       234 l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      ++.|+++++.+  .+++..+++.          ++++++|.++++|+++..+.+.....      ....+.+++|.+.++
T Consensus       240 l~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~~  303 (534)
T PRK05852        240 LASGGAVLLPARGRFSAHTFWDD----------IKAVGATWYTAVPTIHQILLERAATE------PSGRKPAALRFIRSC  303 (534)
T ss_pred             HhcCCeEEeCCCcCcCHHHHHHH----------HHHcCCcEEEcChHHHHHHHhhcccc------cccccCCCeeEEEEC
Confidence            99999999865  4788888988          78899999999999999998753221      112356899999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-----CCCCCCccccc--CCCceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNP--LPGVQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p--~~g~~i~Ivd~d  372 (372)
                      |+++++++++.|.+.|+.++++.||+||++..++....     ......++|.+  .+|++++|+|+|
T Consensus       304 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~  371 (534)
T PRK05852        304 SAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSD  371 (534)
T ss_pred             CCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCC
Confidence            99999999999999999999999999999865543211     11112334444  799999999875

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.4e-42  Score=367.82  Aligned_cols=335  Identities=25%  Similarity=0.369  Sum_probs=270.5

Q ss_pred             HHHHHHHHhCCcCCCceEEEeC-CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            2 EVFKAAYKKGSMARDSVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~-~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ++.+.+.++++++|+++|+++. ++++||+||.++++++|+.|.+                  ++++||+|+++++|+++
T Consensus       616 ~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~------------------~~~~g~~V~i~~~n~~~  677 (1146)
T PRK08633        616 PLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR------------------ELKDEENVGILLPPSVA  677 (1146)
T ss_pred             CHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH------------------hCCCCCeEEEECCCchH
Confidence            5778899999999999999974 6899999999999999999987                  68999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHh--hcC--CcccccCCCCC-CCCCccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS--KSG--AKFSLIPPVPN-VSSETTV  155 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~-~~~~~~~  155 (372)
                      ++++++||+++|++++|+++..+++++.++++++++++++++++..+.+.+...  ...  ........... .......
T Consensus       678 ~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (1146)
T PRK08633        678 GALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL  757 (1146)
T ss_pred             HHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHH
Confidence            999999999999999999999999999999999999999999876665542110  000  11111111000 0000000


Q ss_pred             cc---c--ccc---cc--ccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHH
Q 017382          156 FD---Q--SQA---EK--MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG  225 (372)
Q Consensus       156 ~~---~--~~~---~~--~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~  225 (372)
                      ..   .  .+.   ..  .....++|+++|+|||||||.||+|.+||+++..++......+++.++|++++.+|++|..+
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g  837 (1146)
T PRK08633        758 TALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFG  837 (1146)
T ss_pred             HHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHh
Confidence            00   0  000   00  13446789999999999999999999999999999888888888999999999999999999


Q ss_pred             HHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccC
Q 017382          226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (372)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~  304 (372)
                      +...++.++..|+++++.+ .++++.+++.          ++++++|++.++|++++.+.+..        ...+.++++
T Consensus       838 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~  899 (1146)
T PRK08633        838 LTVTLWLPLLEGIKVVYHPDPTDALGIAKL----------VAKHRATILLGTPTFLRLYLRNK--------KLHPLMFAS  899 (1146)
T ss_pred             HHHHHHHHHHCCCEEEEeCCCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhcc--------ccCcccCCC
Confidence            9777888999999999876 4788888888          88899999999999999887742        223457789


Q ss_pred             ceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC-C---------CCCCCCcccccCCCceEEEeecC
Q 017382          305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-R---------GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       305 lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~---------~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +|.+++||+++++++.+.|++.+|.++++.||+||++.+++... +         ...+.+++|+|+||++++|+|+|
T Consensus       900 lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~  977 (1146)
T PRK08633        900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPE  977 (1146)
T ss_pred             eeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCC
Confidence            99999999999999999999999999999999999886554221 1         11356899999999999999953

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-42  Score=336.30  Aligned_cols=335  Identities=18%  Similarity=0.246  Sum_probs=263.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+.+.+..+++++|+++|+.++++++||+||.+++.++|..|.+                 .|+++||+|+++++|+++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~v~i~~~~~~~   69 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAA-----------------RGVRKGDRILVHSRNCNQ   69 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHH
Confidence            688899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCCcccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQ  158 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (372)
                      ++++++||+++|++++|+++..+.+++.+++++++++.++++++..+.+.........  ....+...............
T Consensus        70 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (528)
T PRK07470         70 MFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR  149 (528)
T ss_pred             HHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhc
Confidence            9999999999999999999999999999999999999999998776655544322211  11111110000000000000


Q ss_pred             c--ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc--ccCCCCeEEEecCchhHHHHHHHHHHHH
Q 017382          159 S--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPL  234 (372)
Q Consensus       159 ~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~~~~~~~~~~l  234 (372)
                      .  .........++++++|+|||||||.||+|.++|.++...+......+  +....|+++..+|++|..++. .++ .+
T Consensus       150 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~  227 (528)
T PRK07470        150 HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QV  227 (528)
T ss_pred             CCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HH
Confidence            0  00112234568999999999999999999999999976555433322  467889999999999999985 344 57


Q ss_pred             HcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       235 ~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      ..|++.++.+  .++++.+++.          ++++++|++.++|+++..+.+...        ....+++++|.+++||
T Consensus       228 ~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG  289 (528)
T PRK07470        228 ARGAATVLLPSERFDPAEVWAL----------VERHRVTNLFTVPTILKMLVEHPA--------VDRYDHSSLRYVIYAG  289 (528)
T ss_pred             hcCceEEEecccCcCHHHHHHH----------HHhcCCeEEechHHHHHHHHhCcC--------cCCCCCcceEEEEEcC
Confidence            7777777665  4788888888          888999999999999999877522        2234678999999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccCCCC--------CCCCCCcccccCCCceEEEeecC
Q 017382          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--------GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--------~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++.+.+.+.+.+|.++++.||+||+++.++....        .....+++|+|++|++++|+|++
T Consensus       290 ~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~  357 (528)
T PRK07470        290 APMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDE  357 (528)
T ss_pred             CCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCC
Confidence            9999999999988899999999999998865542211        12345789999999999999864

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=4.7e-42  Score=336.66  Aligned_cols=332  Identities=19%  Similarity=0.231  Sum_probs=261.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +|+.+.+.++++.+|+++|+++.  ++.+||+||.+++.++|..|.+                 .|+++||+|+++++|+
T Consensus        28 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-----------------~g~~~g~~V~i~~~~~   90 (546)
T PLN02330         28 LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-----------------LGLRKGQVVVVVLPNV   90 (546)
T ss_pred             CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCc
Confidence            47889999999999999999873  6799999999999999999999                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCC--CCCCCc---
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP--NVSSET---  153 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---  153 (372)
                      ++++++++||+++|++++|+++..+.+++.+++++++++++++++...+.+....    ...+.+....  ......   
T Consensus        91 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~  166 (546)
T PLN02330         91 AEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG----LPVIVLGEEKIEGAVNWKELL  166 (546)
T ss_pred             hHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC----CcEEEecCCCCCCcccHHHHH
Confidence            9999999999999999999999999999999999999999999988776654421    1121111110  000000   


Q ss_pred             cccccc-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc--cCCCCeEEEecCchhHHHHHHHH
Q 017382          154 TVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       154 ~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                      ...+.. .........++++++|+|||||||.||+|.++|+++..++........  ....++.+.++|++|..++...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~  246 (546)
T PLN02330        167 EAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGIC  246 (546)
T ss_pred             hhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHH
Confidence            000000 001122345688999999999999999999999999876654322221  22346889999999999987677


Q ss_pred             HHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhcc--CceEE
Q 017382          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK--QLRLM  308 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~--~lr~v  308 (372)
                      +.++..|+++++.+.+++..+++.          ++++++|.+.++|+++..+.+...        ....++.  ++|.+
T Consensus       247 ~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~--------~~~~~~~~~~l~~i  308 (546)
T PLN02330        247 CATLRNKGKVVVMSRFELRTFLNA----------LITQEVSFAPIVPPIILNLVKNPI--------VEEFDLSKLKLQAI  308 (546)
T ss_pred             HHHhhcCCEEEEecccCHHHHHHH----------HHHcCCeeeecCCHHHHHHHhCcc--------ccccccchheeeeE
Confidence            888999999999999999999998          788999999999999999887421        1122233  57999


Q ss_pred             EecCCCCCHHHHHHHHHHh-CCccccccccccccccccCCC--C---CCCCCCcccccCCCceEEEeec
Q 017382          309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--R---GARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~---~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      ++||+++++++++.|.+.| |.++++.||+||++.+.....  .   ...+.+++|+|+||++++|+|.
T Consensus       309 ~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~  377 (546)
T PLN02330        309 MTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDP  377 (546)
T ss_pred             EEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeC
Confidence            9999999999999999998 899999999999875543221  1   1234578999999999999984

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.5e-42  Score=371.42  Aligned_cols=325  Identities=20%  Similarity=0.308  Sum_probs=268.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|.++++.+|+++|++++++.+||+||.++++++|+.|.+.                 |+++||+|+++++|++++
T Consensus       459 ~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~-----------------g~~~g~~V~l~~~~~~~~  521 (1296)
T PRK10252        459 TLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRER-----------------GVKPGDSVAVALPRSVFL  521 (1296)
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            578899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|+++..+.+++.++++.+++++++++......+....   .........   .      ......
T Consensus       522 i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~---~------~~~~~~  589 (1296)
T PRK10252        522 TLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVP---DLTSLCYNA---P------LAPQGA  589 (1296)
T ss_pred             HHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCC---Cceeeeccc---c------cccccC
Confidence            9999999999999999999999999999999999999999986554432210   000000000   0      000001


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||.||||+++|+++.+.+......++++++|++++..|++|..+++ .++.+|+.|++++
T Consensus       590 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~  668 (1296)
T PRK10252        590 APLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVW-EFFWPFIAGAKLV  668 (1296)
T ss_pred             CCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHH-HHHHHHhCCCEEE
Confidence            111223578999999999999999999999999999999999999999999999999999999986 6888999999999


Q ss_pred             EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.+.   .++..+++.          ++++++|++.++|+++..+++....      ......++++|.+++||++++++
T Consensus       669 ~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~l~~l~~~~~~------~~~~~~~~~lr~i~~gGe~l~~~  732 (1296)
T PRK10252        669 MAEPEAHRDPLAMQQF----------FAEYGVTTTHFVPSMLAAFVASLTP------EGARQSCASLRQVFCSGEALPAD  732 (1296)
T ss_pred             ECChhccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhhhcc------ccccccCCCccEEEEecCCCCHH
Confidence            9873   578888887          7889999999999999988765321      11112468899999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccCCCC-C------CCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETITGHRLLERYGMTEFVMAISNPLR-G------ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~------~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.|.+.+|.+++|.||+||++..++.... .      .....++|+|++|++++|+|.+
T Consensus       733 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~  793 (1296)
T PRK10252        733 LCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDAR  793 (1296)
T ss_pred             HHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCC
Confidence            9999998889999999999999865542211 1      2345689999999999999853

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.4e-42  Score=335.98  Aligned_cols=335  Identities=23%  Similarity=0.315  Sum_probs=269.4

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+-+.+.++++.+|+++|+.++++.+||.||.++++++|..|.+.                 |+++||+|+++++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~~~~~   79 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRR-----------------GVGFGDRVLILMLNRTE   79 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            5788999999999999999999999999999999999999999984                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC-c-ccccCCCC--CCCCCcccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLIPPVP--NVSSETTVF  156 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~  156 (372)
                      ++++++||+++|++++|+++..+.+++.+++++++++++++++.....+......... + .+......  .........
T Consensus        80 ~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (542)
T PRK07786         80 FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLL  159 (542)
T ss_pred             HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHh
Confidence            9999999999999999999999999999999999999999998766655444322111 1 11111100  000000000


Q ss_pred             -cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhccc-CCCCeEEEecCchhHHHHHHHHHHHH
Q 017382          157 -DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAPL  234 (372)
Q Consensus       157 -~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l  234 (372)
                       .............+++++++|||||||.||+|.++|+++...+......+++ ...+++++..|++|.+|+. .++.++
T Consensus       160 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l  238 (542)
T PRK07786        160 AEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPGL  238 (542)
T ss_pred             hccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH-HHHHHH
Confidence             0001111223445789999999999999999999999999888877777766 5788999999999999985 688899


Q ss_pred             HcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       235 ~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      ..|+++++.+  .+++..+++.          ++++++|.++++|+++..+++.....         ....++|.+++||
T Consensus       239 ~~G~~~v~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~~---------~~~~~lr~i~~gg  299 (542)
T PRK07786        239 LLGAPTVIYPLGAFDPGQLLDV----------LEAEKVTGIFLVPAQWQAVCAEQQAR---------PRDLALRVLSWGA  299 (542)
T ss_pred             HccCEEEEccCCCcCHHHHHHH----------HHHcCCeEEEehHHHHHHHHhCcccC---------ccCcceEEEEECC
Confidence            9999999865  5789999988          78899999999999999998753211         1123699999999


Q ss_pred             CCCCHHHHHHHHHHh-CCccccccccccccccccCCCC--CCCCCCcccccCCCceEEEeecC
Q 017382          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++++++.+.+.| +.++++.||+||++.+.+....  .....+++|+|+++++++|+|.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  362 (542)
T PRK07786        300 APASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDEN  362 (542)
T ss_pred             CCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCC
Confidence            999999999999988 7899999999999866543222  22456889999999999999864

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.5e-41  Score=330.43  Aligned_cols=332  Identities=25%  Similarity=0.351  Sum_probs=265.3

Q ss_pred             HHHHHh-CCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH
Q 017382            5 KAAYKK-GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA   83 (372)
Q Consensus         5 ~~l~~~-a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~   83 (372)
                      +.+.++ ++.+||++|++.+++.+||.||.++++++|+.|.+                 .|+++|++|+++++|++++++
T Consensus         8 ~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~-----------------~g~~~g~~v~l~~~~~~~~~~   70 (508)
T TIGR02262         8 DLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRR-----------------LGVKREERVLLLMLDGVDFPI   70 (508)
T ss_pred             HHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHHH
Confidence            445555 57799999999999999999999999999999998                 599999999999999999999


Q ss_pred             HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc--ccccCCCCC-CCCCccccc-cc
Q 017382           84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPN-VSSETTVFD-QS  159 (372)
Q Consensus        84 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~-~~  159 (372)
                      +++||+++|++++|+++.++.+++.++++.++++++++++...+.+.+........  ......... ......... ..
T Consensus        71 ~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (508)
T TIGR02262        71 AFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATES  150 (508)
T ss_pred             HHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCC
Confidence            99999999999999999999999999999999999999988777666554333211  111111000 000000000 00


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH-HHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                      .........++++++++|||||||.||+|.++|+++...+.. ....++++.+|+++...|++|..++...++.++..|+
T Consensus       151 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  230 (508)
T TIGR02262       151 EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA  230 (508)
T ss_pred             CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCc
Confidence            111122345789999999999999999999999999887765 3456688899999999999999998767788899999


Q ss_pred             eEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          239 TVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      ++++.+. +++..+++.          ++++++|.+.++|+++..+.+...        .....+.++|.+++||+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~~~~~~~--------~~~~~~~~l~~~~~~G~~l~~  292 (508)
T TIGR02262       231 TTVLMGERPTPDAVFDR----------LRRHQPTIFYGVPTLYAAMLADPN--------LPAEDQVRLRLCTSAGEALPA  292 (508)
T ss_pred             eEEEeCCCCCHHHHHHH----------HHHHCCcEEecchHHHHHHhcCcc--------ccccccccceeEEEcCCCCCH
Confidence            9988764 578888888          778999999999999887765421        122346789999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      ++.+.|.+.||+++++.||+||++.+.+.........+++|+|++|++++|+|.
T Consensus       293 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~  346 (508)
T TIGR02262       293 EVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGD  346 (508)
T ss_pred             HHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECC
Confidence            999999999999999999999998765533333345678999999999999985

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.6e-42  Score=335.79  Aligned_cols=324  Identities=21%  Similarity=0.290  Sum_probs=247.0

Q ss_pred             CH-HHHHHHHhCCcCCCceEEEeCC----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            1 ME-VFKAAYKKGSMARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         1 m~-~~~~l~~~a~~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      || +.+.|.++++++|+++|+++.+    +++||+||.++++++|+.|.+                 .  ++||+|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-----------------~--~~g~~V~l~~   61 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-----------------R--DRPGAVGLVG   61 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-----------------c--CCCCeEEEEc
Confidence            78 8899999999999999999876    889999999999999999987                 3  7899999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCC-------CCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCC
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN  148 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (372)
                      +|+++++++++|++++|+++++++..       ...+++.++++.++++++|++....+.+......     +.+.....
T Consensus        62 ~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~  136 (525)
T PRK05851         62 EPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-----VTVHDLAT  136 (525)
T ss_pred             CCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-----cccccccc
Confidence            99999999999999999986544311       1234556778999999999987765544332111     01100000


Q ss_pred             CCCCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccC-CCCeEEEecCchhHHHHH
Q 017382          149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT-SADQFLHCLPLHHVHGLF  227 (372)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~~~~~~~  227 (372)
                      ..      ............++++++|+|||||||.||||+++|+++...+......+++. .+|++++++|++|.+++.
T Consensus       137 ~~------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  210 (525)
T PRK05851        137 AA------HTNRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA  210 (525)
T ss_pred             cc------cccccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH
Confidence            00      00000011123578999999999999999999999999999988888888888 899999999999999996


Q ss_pred             HHHHHHHHcCceEEEcCC--C--chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhcc
Q 017382          228 NALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK  303 (372)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~  303 (372)
                       .++.++..|+++++.+.  +  ++..+++.          ++++++|++..+|.++..+.+...       .....+++
T Consensus       211 -~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~p~~~~~~l~~~~~-------~~~~~~l~  272 (525)
T PRK05851        211 -FLLTAALAGAPLWLAPTTAFSASPFRWLSW----------LSDSRATLTAAPNFAYNLIGKYAR-------RVSDVDLG  272 (525)
T ss_pred             -HHHHHHHcCCeEEEcCHHHHHHCHHHHHHH----------HHHhCCeEEeCCcHHHHHHHHhhc-------cccCCCHH
Confidence             57889999999999873  4  46677777          778899988665555544433211       11234678


Q ss_pred             CceEEEecCCCCCHHHHHHHHHH---hCC---ccccccccccccccccCCCC---------------CCCCCCcccccCC
Q 017382          304 QLRLMMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEFVMAISNPLR---------------GARKAGTVGNPLP  362 (372)
Q Consensus       304 ~lr~v~~gG~~~~~~~~~~~~~~---~~~---~l~~~YG~tE~~~~~~~~~~---------------~~~~~~svG~p~~  362 (372)
                      ++|.+++||+++++++.+.|.+.   +|.   .++|.||+||++..++....               ...+.+++|+|+|
T Consensus       273 ~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~  352 (525)
T PRK05851        273 ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP  352 (525)
T ss_pred             HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCC
Confidence            99999999999999999999875   454   49999999999765442211               0123468999999


Q ss_pred             CceEEEeecC
Q 017382          363 GVQVSMILLL  372 (372)
Q Consensus       363 g~~i~Ivd~d  372 (372)
                      |++++|+|.|
T Consensus       353 g~~v~i~d~~  362 (525)
T PRK05851        353 GMEVRISPGD  362 (525)
T ss_pred             CcEEEEECCC
Confidence            9999999864

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.1e-42  Score=341.63  Aligned_cols=334  Identities=18%  Similarity=0.167  Sum_probs=255.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      |+.+.+.++  .+|+++|+++.+     +++||+||.+++.++|+.|++                 .|+++||+|+++++
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~  147 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-----------------LGVGPGDRVAAYLP  147 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            444555543  479999999743     689999999999999999999                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcCC--cccccCC
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIPP  145 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~~  145 (372)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++++|+++..         .+.+.++......  .++.+..
T Consensus       148 n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  227 (655)
T PRK03584        148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPY  227 (655)
T ss_pred             CCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEec
Confidence            9999999999999999999999999999999999999999999998643         2233333322221  1122211


Q ss_pred             CCC------CCCCccccc-----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHH-HHHHHhhcccCCCCe
Q 017382          146 VPN------VSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQ  213 (372)
Q Consensus       146 ~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~d~  213 (372)
                      ...      ........+     ............+++++|+|||||||.||||+++|.+++.+ .......+++.++|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  307 (655)
T PRK03584        228 LGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDR  307 (655)
T ss_pred             CCCcccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCE
Confidence            100      000000000     00011122345689999999999999999999999987644 455566778899999


Q ss_pred             EEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhh
Q 017382          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (372)
Q Consensus       214 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~  289 (372)
                      +++..++.|..+.  .++.+|+.|+++++.+.    +++..+++.          ++++++|++..+|+++..+.+....
T Consensus       308 ~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        308 FFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDL----------AAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             EEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHH----------HHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            9999999998654  36688999999999763    478888888          7889999999999999988763110


Q ss_pred             ccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHh--CCcccccccccccccccc-CCCCCCCCCCcccccCCCceE
Q 017382          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQV  366 (372)
Q Consensus       290 ~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~-~~~~~~~~~~svG~p~~g~~i  366 (372)
                            .....++++||.+++||+++++++.+.|.+.+  +..+.+.||+||+++... .......+.+++|.|++|+++
T Consensus       376 ------~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~  449 (655)
T PRK03584        376 ------PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAV  449 (655)
T ss_pred             ------ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCcee
Confidence                  11235789999999999999999999999988  478999999999864433 222223467899999999999


Q ss_pred             EEeecC
Q 017382          367 SMILLL  372 (372)
Q Consensus       367 ~Ivd~d  372 (372)
                      +|+|+|
T Consensus       450 ~ivd~~  455 (655)
T PRK03584        450 EAWDED  455 (655)
T ss_pred             EEECCC
Confidence            999975

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2e-41  Score=330.22  Aligned_cols=335  Identities=22%  Similarity=0.284  Sum_probs=264.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      |+.+.+.+.++++|+++|+++++     +++||.||.++++++|+.|.+                 +|+++||+|+++++
T Consensus         8 ~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-----------------~g~~~~~~v~i~~~   70 (517)
T PRK08008          8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-----------------LGIRKGDKVALHLD   70 (517)
T ss_pred             cHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            57889999999999999998753     789999999999999999998                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--Cc-ccccCC-CCCCCCC
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AK-FSLIPP-VPNVSSE  152 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~~~~~  152 (372)
                      |+++++++++||+++|++++++++..+.+++.+++++++++.++++++..+.+.++.....  .+ ...... .......
T Consensus        71 n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (517)
T PRK08008         71 NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGV  150 (517)
T ss_pred             CCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccc
Confidence            9999999999999999999999999999999999999999999999887776665543221  11 111111 0000000


Q ss_pred             ccccc---cc--ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 017382          153 TTVFD---QS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (372)
Q Consensus       153 ~~~~~---~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~  227 (372)
                      .....   ..  .........++++++|+|||||||.||+|+++|+++............+..++++++.+|++|..+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (517)
T PRK08008        151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC  230 (517)
T ss_pred             cCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence            00000   00  00112234568999999999999999999999999986554443444578899999999999998777


Q ss_pred             HHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceE
Q 017382          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (372)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (372)
                      ..++.++..|+++++.+.+++..+++.          ++++++|++.++|++++.+......        ......+++.
T Consensus       231 ~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~l~~  292 (517)
T PRK08008        231 TAAMAAFSAGATFVLLEKYSARAFWGQ----------VCKYRATITECIPMMIRTLMVQPPS--------ANDRQHCLRE  292 (517)
T ss_pred             HHHHHHHhcCcEEEEccccCHHHHHHH----------HHHcCCcEEechHHHHHHHHhCCCc--------ccccccccee
Confidence            778889999999999999999999998          7889999999999999888764221        1112356777


Q ss_pred             EEecCCCCCHHHHHHHHHHhCCccccccccccccccccC-CCCCCCCCCcccccCCCceEEEeecC
Q 017382          308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.++ .+++++..+.|.+.+|.++++.||+||++..++. ........+++|+|++|++++|+|.+
T Consensus       293 ~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~  357 (517)
T PRK08008        293 VMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDH  357 (517)
T ss_pred             eEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCC
Confidence            7775 4789999999999999999999999999865442 22233456789999999999999863

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-42  Score=394.51  Aligned_cols=323  Identities=21%  Similarity=0.313  Sum_probs=270.5

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++++||++|++++++++||+||.++++++|+.|.+.                 |+++|++|+++++|++++
T Consensus      3096 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------gv~~g~~V~l~~~~s~~~ 3158 (3956)
T PRK12467       3096 LVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAI-----------------GVGPDVLVGVAVERSVEM 3158 (3956)
T ss_pred             cHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHc-----------------CCCCCCeEEEEeCCCHHH
Confidence            678999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|++|.++.+++.++++++++++++++....+.+...   .......++...       .......
T Consensus      3159 vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~ 3228 (3956)
T PRK12467       3159 IVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP---AGDTALTLDRLD-------LNGYSEN 3228 (3956)
T ss_pred             HHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc---cCCceeeecchh-------hcccCCC
Confidence            999999999999999999999999999999999999999997654433211   011111111100       0001111


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||+||||+++|+++.+.+......++++++|+++++.|++|..+.+ .++.+|+.|++++
T Consensus      3229 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~ 3307 (3956)
T PRK12467       3229 NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQE-RFLWTLICGGCLV 3307 (3956)
T ss_pred             CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHH-HHHHHHhCCCEEE
Confidence            122345678999999999999999999999999999999999999999999999999999999885 6899999999999


Q ss_pred             EcCC--CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +.+.  +++..+++.          ++++++|++.++|+++..+++..          ...++++||.+++|||++++++
T Consensus      3308 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~----------~~~~~~~lr~~~~gGe~~~~~~ 3367 (3956)
T PRK12467       3308 VRDNDLWDPEELWQA----------IHAHRISIACFPPAYLQQFAEDA----------GGADCASLDIYVFGGEAVPPAA 3367 (3956)
T ss_pred             ECCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhcc----------cccCCCCceEEEEecCCCCHHH
Confidence            9986  688899988          88899999999999999887641          1236788999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccCCC-CC----CCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETIT-GHRLLERYGMTEFVMAISNPL-RG----ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-~~----~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+.|.+.+ +..++|.||+||+++.++... ..    .....++|+|++|++++|+|.+
T Consensus      3368 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~ 3426 (3956)
T PRK12467       3368 FEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQ 3426 (3956)
T ss_pred             HHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCC
Confidence            99999887 678999999999987654211 11    1234789999999999999864

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-41  Score=326.46  Aligned_cols=300  Identities=33%  Similarity=0.518  Sum_probs=252.7

Q ss_pred             CcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhh
Q 017382           12 SMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFS   91 (372)
Q Consensus        12 ~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~   91 (372)
                      ...++++|++++++++||+||.++++++|..|+.                      +|+|+++++|+++++++++||+++
T Consensus        11 ~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~----------------------~~~V~l~~~~~~~~~~~~la~~~~   68 (471)
T PRK07787         11 AAADIADAVRIGGRVLSRSDLAGAATAVAERVAG----------------------ARRVAVLATPTLATVLAVVGALIA   68 (471)
T ss_pred             cccCCceEEEeCCcEEEHHHHHHHHHHHHHHhcc----------------------CCEEEEECCCCHHHHHHHHHHHhc
Confidence            4468999999999999999999999999999964                      599999999999999999999999


Q ss_pred             CceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccccccccCCCCCC
Q 017382           92 GCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGED  171 (372)
Q Consensus        92 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (372)
                      |++++|+++..+.+++.+++++++++.++++++...      ..........    ...   .      ........+++
T Consensus        69 G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~----~~~---~------~~~~~~~~~~~  129 (471)
T PRK07787         69 GVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDP------AGLPHVPVRL----HAR---S------WHRYPEPDPDA  129 (471)
T ss_pred             CcEEeecCCCCChHHHHHHHHhcCCCEEEecCCccc------ccccceeeec----ccc---c------cccCCCCCCCc
Confidence            999999999999999999999999999999863110      0000000000    000   0      00112245689


Q ss_pred             cEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHH
Q 017382          172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI  251 (372)
Q Consensus       172 ~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  251 (372)
                      +++|+|||||||.||+|.++|+++...+......+.+..+|++++.+|++|..|++..++.++..|+++++.+.+++..+
T Consensus       130 ~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  209 (471)
T PRK07787        130 PALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAY  209 (471)
T ss_pred             eEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHH
Confidence            99999999999999999999999999988888888899999999999999999998889999999999999999999999


Q ss_pred             HHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCcc
Q 017382          252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRL  331 (372)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l  331 (372)
                      ++.          ++ +++|++.++|+++..+.+...         ....++++|.+++||+++++++++.|.+.++.++
T Consensus       210 ~~~----------i~-~~~t~~~~~P~~~~~l~~~~~---------~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~  269 (471)
T PRK07787        210 AQA----------LS-EGGTLYFGVPTVWSRIAADPE---------AARALRGARLLVSGSAALPVPVFDRLAALTGHRP  269 (471)
T ss_pred             HHH----------Hh-hCceEEEcchHHHHHHHhCcc---------ccccccceeEEEECCCCCCHHHHHHHHHHcCCCe
Confidence            998          78 899999999999999886421         1235688999999999999999999999899999


Q ss_pred             ccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          332 LERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       332 ~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.||+||++...+.........+++|+|++|++++|+|++
T Consensus       270 ~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~  310 (471)
T PRK07787        270 VERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDED  310 (471)
T ss_pred             ecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCC
Confidence            99999999986554444334566889999999999999864

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-41  Score=331.38  Aligned_cols=336  Identities=25%  Similarity=0.295  Sum_probs=266.1

Q ss_pred             HHHHHHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      ++.+.|.++++++|+++|++.  .++.+||+||.++++++|+.|.+                 .|+++||+|+++++|++
T Consensus        19 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gi~~g~~V~i~~~~~~   81 (558)
T PRK12583         19 TIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLA-----------------LGVQPGDRVGIWAPNCA   81 (558)
T ss_pred             cHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCh
Confidence            688999999999999999987  45799999999999999999998                 49999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcCC---------------c
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA---------------K  139 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~---------------~  139 (372)
                      ++++++||++++|++++|+++..+.+++.+++++++++++|+++...     ..+.........               .
T Consensus        82 ~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (558)
T PRK12583         82 EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG  161 (558)
T ss_pred             HHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceE
Confidence            99999999999999999999999999999999999999999976431     222221111000               0


Q ss_pred             ccccCCCC--CCCCCccc---ccc----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCC
Q 017382          140 FSLIPPVP--NVSSETTV---FDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS  210 (372)
Q Consensus       140 ~~~~~~~~--~~~~~~~~---~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~  210 (372)
                      .+......  ........   ...    ..........++++++++|||||||.||+|.++|+++..++......++++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  241 (558)
T PRK12583        162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE  241 (558)
T ss_pred             EEEecCCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence            00000000  00000000   000    0000112235688999999999999999999999999998888888888999


Q ss_pred             CCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhh
Q 017382          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (372)
Q Consensus       211 ~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~  289 (372)
                      +|++++..|++|..|....++.++..|+++++.. .+++..+++.          ++++++|+++++|+++..+.+... 
T Consensus       242 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~-  310 (558)
T PRK12583        242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA----------VEEERCTALYGVPTMFIAELDHPQ-  310 (558)
T ss_pred             CCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcccc-
Confidence            9999999999999999888899999999999754 5788888888          788999999999999988776421 


Q ss_pred             ccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC-CccccccccccccccccCCCC---CCCCCCcccccCCCce
Q 017382          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQ  365 (372)
Q Consensus       290 ~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~---~~~~~~svG~p~~g~~  365 (372)
                             ....+++++|.+++||+++++++.+.+.+.++ ..+++.||+||++.+.+....   ...+..++|+|+++++
T Consensus       311 -------~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~  383 (558)
T PRK12583        311 -------RGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLE  383 (558)
T ss_pred             -------ccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCe
Confidence                   12346789999999999999999999999886 479999999999876653321   1235688999999999


Q ss_pred             EEEeecC
Q 017382          366 VSMILLL  372 (372)
Q Consensus       366 i~Ivd~d  372 (372)
                      ++|+|+|
T Consensus       384 ~~i~d~~  390 (558)
T PRK12583        384 VKVVDPD  390 (558)
T ss_pred             EEEECCC
Confidence            9999874

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-41  Score=336.36  Aligned_cols=333  Identities=19%  Similarity=0.256  Sum_probs=250.0

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC---------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V   71 (372)
                      ||+.+.+.++++++|+++|+++.         .+.+||+||.++++++|+.|.+                  .+++||+|
T Consensus        34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~------------------~~~~gd~V   95 (612)
T PRK12476         34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ------------------VAGPGDRV   95 (612)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH------------------hcCCCCEE
Confidence            47788899999999999999862         1489999999999999999988                  48999999


Q ss_pred             EEEcCCCHhHHHHHHHHHhhCceeeeC-CCCCC--HHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC----CcccccC
Q 017382           72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP  144 (372)
Q Consensus        72 ~l~~~n~~~~~~~~~A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~  144 (372)
                      +++++|+++++++++||+++|++++|+ ++.++  .+++.+++++++++++|+++...+.+........    ..++.+.
T Consensus        96 ~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~  175 (612)
T PRK12476         96 AILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID  175 (612)
T ss_pred             EEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec
Confidence            999999999999999999999999999 57766  7899999999999999999877665544332221    1111111


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc-cCCCCeEEEecCchhH
Q 017382          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHCLPLHHV  223 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~  223 (372)
                      ....     .   ...........++++++|+|||||||.||||+++|+++..++......+. +.+++++++++|++|.
T Consensus       176 ~~~~-----~---~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~  247 (612)
T PRK12476        176 AIPD-----S---AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD  247 (612)
T ss_pred             cccc-----c---ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence            1100     0   00001112345689999999999999999999999999887777666677 7888999999999999


Q ss_pred             HHHHHHHHHHHHcCceEEEcC-CC--chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhh
Q 017382          224 HGLFNALLAPLYAGATVEFMP-KF--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (372)
Q Consensus       224 ~~~~~~~~~~l~~G~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  300 (372)
                      .++...++.++..|.++++.+ .+  ++..+++.+.        ..+++++.++.+|+++..+.......    ......
T Consensus       248 ~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~--------~~~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~~  315 (612)
T PRK12476        248 MGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALS--------EGSRTGRVVTAAPNFAYEWAAQRGLP----AEGDDI  315 (612)
T ss_pred             cchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHh--------hhccCCeEEEeCCcHHHHHHHHhcCh----hhhcCc
Confidence            998654444454444444433 23  7788888731        14588999999999988876531100    011234


Q ss_pred             hccCceEEEecCCCCCHHHHHHHHHHh---CC---ccccccccccccccccCCCCCC-----------------------
Q 017382          301 AAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNPLRGA-----------------------  351 (372)
Q Consensus       301 ~l~~lr~v~~gG~~~~~~~~~~~~~~~---~~---~l~~~YG~tE~~~~~~~~~~~~-----------------------  351 (372)
                      +++++| +++||+++++++.+.|.+.|   |.   .+++.||+||++..++......                       
T Consensus       316 ~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  394 (612)
T PRK12476        316 DLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAAD  394 (612)
T ss_pred             chhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCC
Confidence            678999 99999999999999999988   44   4899999999875543211100                       


Q ss_pred             ----CCCCcccccCCCceEEEeecC
Q 017382          352 ----RKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       352 ----~~~~svG~p~~g~~i~Ivd~d  372 (372)
                          .+.+++|+|++|++++|+|.+
T Consensus       395 ~~~~~~~~~~G~~~~g~~v~ivd~~  419 (612)
T PRK12476        395 APNAVAHVSCGQVARSQWAVIVDPD  419 (612)
T ss_pred             CCCcceeEeCCCcCCCCEEEEEeCC
Confidence                123589999999999999964

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-41  Score=330.66  Aligned_cols=335  Identities=18%  Similarity=0.246  Sum_probs=261.7

Q ss_pred             HHHHHHHHhCCcCCCceEEEe--C--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            2 EVFKAAYKKGSMARDSVAIRA--D--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~--~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++-+.|..+++.+|++.++.+  +  .+.+||.||.++++++|++|.+                 +|+++||+|+++++|
T Consensus        11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~~d~v~i~~~~   73 (539)
T PRK07008         11 LISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-----------------LGVEPGDRVGTLAWN   73 (539)
T ss_pred             CHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence            356778888888999888874  2  2689999999999999999999                 499999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcc--cccCCCCCCCC----
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPNVSS----  151 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----  151 (372)
                      ++++++.++||+++|++++|+++.++++++.++++.+++++++++.++.+.+.++........  +.+........    
T Consensus        74 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (539)
T PRK07008         74 GYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTP  153 (539)
T ss_pred             cHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcc
Confidence            999999999999999999999999999999999999999999999887776665543332111  11111100000    


Q ss_pred             Cccc---ccc-cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHH--HHHhhcccCCCCeEEEecCchhHHH
Q 017382          152 ETTV---FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ--MLTEAWEYTSADQFLHCLPLHHVHG  225 (372)
Q Consensus       152 ~~~~---~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~d~~l~~~pl~~~~~  225 (372)
                      ....   ... ..........++++++++|||||||.||+|++||++++.+..  .....++++.+|+++...|++|..+
T Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  233 (539)
T PRK07008        154 LLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNA  233 (539)
T ss_pred             cccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhh
Confidence            0000   000 001112234668899999999999999999999999875432  2334667888999999999999887


Q ss_pred             HHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccC
Q 017382          226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (372)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~  304 (372)
                      +. .++.++..|+++++.+ .+++..+++.          ++++++|++.++|+++..+.+....        ...++++
T Consensus       234 ~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~  294 (539)
T PRK07008        234 WG-LPYSAPLTGAKLVLPGPDLDGKSLYEL----------IEAERVTFSAGVPTVWLGLLNHMRE--------AGLRFST  294 (539)
T ss_pred             HH-HHHHHHhcCceEEEecCCcCHHHHHHH----------HHHcCCEEEEechHHHHHHHhcccc--------cCCCccc
Confidence            74 3577899999999874 5788888888          7889999999999999999875322        2346789


Q ss_pred             ceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-----------CCCCCCcccccCCCceEEEeecC
Q 017382          305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-----------GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       305 lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-----------~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +|.++++|+++++++.+.|.+.+|.++++.||+||++..++....           ......++|+|+||++++|+|++
T Consensus       295 l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~  373 (539)
T PRK07008        295 LRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDD  373 (539)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCC
Confidence            999999999999999999999999999999999999865432110           01124689999999999999864

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.9e-43  Score=304.50  Aligned_cols=336  Identities=20%  Similarity=0.219  Sum_probs=281.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|.++|.++||++|++++++.+||+||.++++++|..|++                 +|+++||+|.+.+||..+|
T Consensus        29 ~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~-----------------lGi~~Gd~vlvQLpN~~ef   91 (542)
T COG1021          29 TLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRR-----------------LGIKPGDTVLVQLPNVAEF   91 (542)
T ss_pred             cHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCchHHH
Confidence            57889999999999999999999999999999999999999999                 5999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc-----hHHHHHHHHhhcCC-cccccCCCCC-CCCCcc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-----YREVLQNVASKSGA-KFSLIPPVPN-VSSETT  154 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~  154 (372)
                      ++++||++++|+++|.-=|+....||....+...++.+|.+..     +.+...+....... +.+++..... ......
T Consensus        92 ~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~  171 (542)
T COG1021          92 YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEA  171 (542)
T ss_pred             HHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhh
Confidence            9999999999999999989999999999999999999998863     34555555554443 3333332111 111111


Q ss_pred             ccc--ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHH
Q 017382          155 VFD--QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (372)
Q Consensus       155 ~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~  231 (372)
                      ...  .....+.++.+++++++...+.||||.||.+..+|.....++..-.+.+++++.+++++.+|..|-+.+.. +.+
T Consensus       172 ~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~L  251 (542)
T COG1021         172 ALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGAL  251 (542)
T ss_pred             hhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchh
Confidence            111  11112244567788999999999999999999999999999999999999999999999999999877643 678


Q ss_pred             HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      +.+..|+++|+.+..+|+..+..          |++++||+...+|.+...++++.+        -...+++|||.+-+|
T Consensus       252 Gv~~agG~VVla~~psp~~~F~l----------Ierh~Vt~tALVPpla~LWlqa~e--------~~~~~LsSLrllQVG  313 (542)
T COG1021         252 GVFLAGGTVVLAPDPSPELCFPL----------IERHGVTVTALVPPLASLWLQAAE--------WERADLSSLRLLQVG  313 (542)
T ss_pred             heeeeccEEEECCCCCHHHHHHH----------HHHhccceEEeccHHHHHHHHhhh--------cccCCchheeEEeec
Confidence            88999999999999999999999          899999999999999999998743        255689999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccCC-CCCCCCCCcccccC-CCceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~-~g~~i~Ivd~d  372 (372)
                      |+.++++..++....+|+.+-+.|||.|.-..-+-- ...+.-..+.|+|+ |.=|++|+|.|
T Consensus       314 Garl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~d  376 (542)
T COG1021         314 GARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDAD  376 (542)
T ss_pred             CcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCC
Confidence            999999999999999999999999999976555422 22244568899999 66789999976

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.9e-41  Score=332.10  Aligned_cols=338  Identities=22%  Similarity=0.304  Sum_probs=261.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.|.++++++|+++|+..+++.+||.||.++++++|+.|.++                .|+++||+|+++++|+++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~gi~~gd~V~i~~~n~~e   87 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQH----------------TDLVPGDRIAVQMPNVLQ   87 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHH
Confidence            3678899999999999999999999999999999999999999873                389999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCccccc-------CCC-------
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI-------PPV-------  146 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------  146 (372)
                      ++++++||+++|++++|+++..+.+++.+++++++++++++++...+.+..............       ...       
T Consensus        88 ~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
T PRK12492         88 YPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNT  167 (562)
T ss_pred             HHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhccc
Confidence            999999999999999999999999999999999999999998765444433322110000000       000       


Q ss_pred             ---------CC--CCCCccccc---c--cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc---
Q 017382          147 ---------PN--VSSETTVFD---Q--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---  207 (372)
Q Consensus       147 ---------~~--~~~~~~~~~---~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---  207 (372)
                               ..  .........   .  ...........+++++|+|||||||.||+|+++|+++..++......+.   
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~  247 (562)
T PRK12492        168 VVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLG  247 (562)
T ss_pred             ccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccc
Confidence                     00  000000000   0  0000112345678999999999999999999999999887766555442   


Q ss_pred             ------cCC-CCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHH
Q 017382          208 ------YTS-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM  279 (372)
Q Consensus       208 ------~~~-~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~  279 (372)
                            +.. .++++..+|++|.+++...++..+..|...++.. .+++..++..          ++++++|++.++|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~  317 (562)
T PRK12492        248 PDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKE----------LGKWRFSALLGLNTL  317 (562)
T ss_pred             ccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHH----------HHHhCCceeeCcHHH
Confidence                  222 3577899999999998766777788888776654 4678888887          788999999999999


Q ss_pred             HHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC-CCCCCCCccc
Q 017382          280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVG  358 (372)
Q Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG  358 (372)
                      +..+.+...        ....+++++|.+++||+++++.+.+.|.+.+|+++++.||+||++.+++... ....+.+++|
T Consensus       318 ~~~l~~~~~--------~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  389 (562)
T PRK12492        318 FVALMDHPG--------FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVG  389 (562)
T ss_pred             HHHHHhCcC--------cccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccc
Confidence            999887522        2234678999999999999999999999989999999999999986655332 2234567899


Q ss_pred             ccCCCceEEEeecC
Q 017382          359 NPLPGVQVSMILLL  372 (372)
Q Consensus       359 ~p~~g~~i~Ivd~d  372 (372)
                      +|++|++++|+|++
T Consensus       390 ~p~~~~~v~ivd~~  403 (562)
T PRK12492        390 IPVPGTALKVIDDD  403 (562)
T ss_pred             eecCCCEEEEECCC
Confidence            99999999999964

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-41  Score=335.29  Aligned_cols=322  Identities=23%  Similarity=0.255  Sum_probs=259.0

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      .|+.+.|.++++++|+++|++++++.+||+||.++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus        37 ~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~-----------------~g~~~gd~V~i~~~n~~~   99 (600)
T PRK08279         37 RSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAA-----------------RGVGKGDVVALLMENRPE   99 (600)
T ss_pred             ccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCCHH
Confidence            368899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC-cccccCCCCC------CCCCc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN------VSSET  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~  153 (372)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+......... ..........      +....
T Consensus       100 ~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (600)
T PRK08279        100 YLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLA  179 (600)
T ss_pred             HHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHh
Confidence            9999999999999999999999999999999999999999998877766665443322 1111111000      00000


Q ss_pred             ccccccc---cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 017382          154 TVFDQSQ---AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       154 ~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                      .......   ........++++++|+|||||||.||+|++||+++..++......++++++|++++.+|++|.+++...+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~  259 (600)
T PRK08279        180 AAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW  259 (600)
T ss_pred             hhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHH
Confidence            0000000   1111234568999999999999999999999999999999888889999999999999999999998777


Q ss_pred             HHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~  310 (372)
                      +.++..|+++++.+.+++..+++.          ++++++|++.++|++++.+++....        ......++|.+  
T Consensus       260 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~l~~~l~~~~~~--------~~~~~~~l~~~--  319 (600)
T PRK08279        260 SSVLAAGATLALRRKFSASRFWDD----------VRRYRATAFQYIGELCRYLLNQPPK--------PTDRDHRLRLM--  319 (600)
T ss_pred             HHHHhcCcEEEEcCCCCHHHHHHH----------HHHhcceEEeehHHHHHHHHhCCCC--------ccccCcceeEE--
Confidence            888999999999999999999988          7889999999999999988765221        11234567764  


Q ss_pred             cCCCCCHHHHHHHHHHhCC-ccccccccccccccccCCCCCCCCCCcccccCC
Q 017382          311 GSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLP  362 (372)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~  362 (372)
                      +|+++++++++.|.+.|+. .+++.||+||++......   ....+++|++.+
T Consensus       320 ~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~  369 (600)
T PRK08279        320 IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVPL  369 (600)
T ss_pred             ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCcccccccc
Confidence            4788999999999999976 599999999988644322   234566776655

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-41  Score=331.20  Aligned_cols=336  Identities=23%  Similarity=0.298  Sum_probs=262.4

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|..+++++|+++|+++.++.+||.||.+++.++|..|.+                 .|+++||+|+++++|++++
T Consensus        24 ~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~-----------------~gi~~gd~V~i~~~n~~~~   86 (557)
T PRK07059         24 SLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQS-----------------RGLAKGARVAIMMPNVLQY   86 (557)
T ss_pred             CHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCHHH
Confidence            58899999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCC-CC-------------
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VP-------------  147 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------  147 (372)
                      +++++||+++|++++|+++..+.+++.+++++++++++|+++.....+...........+.+.. ..             
T Consensus        87 ~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (557)
T PRK07059         87 PVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV  166 (557)
T ss_pred             HHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccc
Confidence            9999999999999999999999999999999999999999987766555443221111111100 00             


Q ss_pred             --------CCC--CCccccc-----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc----c
Q 017382          148 --------NVS--SETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----Y  208 (372)
Q Consensus       148 --------~~~--~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~  208 (372)
                              .+.  ......+     ...........++++++|+|||||||.||+|+++|.+++.++........    .
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~  246 (557)
T PRK07059        167 RRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK  246 (557)
T ss_pred             ccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence                    000  0000000     00011123345789999999999999999999999999876554332221    1


Q ss_pred             ---CCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHH
Q 017382          209 ---TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI  284 (372)
Q Consensus       209 ---~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~  284 (372)
                         ...+.+++.+|++|.+++....+.++..|++.++.+. .++..+++.          ++++++|.+.++|+++..+.
T Consensus       247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~  316 (557)
T PRK07059        247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKE----------LKKYQVHIFPAVNTLYNALL  316 (557)
T ss_pred             cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHH----------HHHhCCeeeecCHHHHHHHH
Confidence               1235678899999998876667778888888777664 577888888          78899999999999999988


Q ss_pred             HhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCC
Q 017382          285 QGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG  363 (372)
Q Consensus       285 ~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g  363 (372)
                      +...        ....+++++|.++.||+++++.+.+.|.+.+|.++++.||+||++.+++.... .....+++|+|++|
T Consensus       317 ~~~~--------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g  388 (557)
T PRK07059        317 NNPD--------FDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPS  388 (557)
T ss_pred             cCcC--------cCcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCC
Confidence            7522        22346789999999999999999999999999999999999999876553322 23456899999999


Q ss_pred             ceEEEeecC
Q 017382          364 VQVSMILLL  372 (372)
Q Consensus       364 ~~i~Ivd~d  372 (372)
                      ++++|+|++
T Consensus       389 ~~v~i~d~~  397 (557)
T PRK07059        389 TEVSIRDDD  397 (557)
T ss_pred             cEEEEECCC
Confidence            999999863

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-41  Score=326.63  Aligned_cols=317  Identities=21%  Similarity=0.285  Sum_probs=255.7

Q ss_pred             HHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHH
Q 017382            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (372)
Q Consensus         8 ~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~   85 (372)
                      ..+++.+||++|+.+  +++.+||.||.++++++|+.|.+                 .|+++||+|+++++|++++++++
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-----------------~g~~~~~~v~i~~~~~~~~~~~~   64 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-----------------RGCVDGERLAVLARNSVWLVALH   64 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHHHHH
Confidence            356778999999986  68899999999999999999998                 49999999999999999999999


Q ss_pred             HHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccccccc
Q 017382           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD  165 (372)
Q Consensus        86 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (372)
                      +|++++|++++|+++.++.+++.+++++++++++|+++......        .....+.....      ...........
T Consensus        65 la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~~------~~~~~~~~~~~  130 (488)
T PRK09088         65 FACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------TDVEDLAAFIA------SADALEPADTP  130 (488)
T ss_pred             HHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------ccccchhhhhh------hccccccccCC
Confidence            99999999999999999999999999999999999987543210        00000000000      00000001112


Q ss_pred             CCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC
Q 017382          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK  245 (372)
Q Consensus       166 ~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~  245 (372)
                      ...++++++++|||||||.||+|.+||+++...+...........+|++++.+|++|..++...++.++..|+++++.+.
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~  210 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG  210 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence            23567899999999999999999999999988877777777788999999999999999998778889999999999999


Q ss_pred             CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHH
Q 017382          246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWET  325 (372)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~  325 (372)
                      +++...+..+.+        .++++|+++++|+++..+.+...        ....+++++|.+++||++++.+..+.+.+
T Consensus       211 ~~~~~~~~~~~~--------~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gG~~~~~~~~~~~~~  274 (488)
T PRK09088        211 FEPKRTLGRLGD--------PALGITHYFCVPQMAQAFRAQPG--------FDAAALRHLTALFTGGAPHAAEDILGWLD  274 (488)
T ss_pred             CCHHHHHHHHHh--------hccCCcEEeeHHHHHHHHHhCcC--------cCccccccceEEEecCCCCCHHHHHHHHH
Confidence            999988887421        35899999999999998876421        12335689999999999999999888876


Q ss_pred             HhCCccccccccccccccccCCCC---CCCCCCcccccCCCceEEEeecC
Q 017382          326 ITGHRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       326 ~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      . |+++++.||+||++.+......   ...+.+++|+|+|+++++|+|.|
T Consensus       275 ~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~  323 (488)
T PRK09088        275 D-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQ  323 (488)
T ss_pred             h-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCC
Confidence            5 8999999999999865432111   12456889999999999999864

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-41  Score=335.56  Aligned_cols=331  Identities=21%  Similarity=0.288  Sum_probs=253.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC---------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V   71 (372)
                      +|+.+.|.++++.+|+++|+++.         .+.+||+||.++++++|+.|.+                  .+++||+|
T Consensus        21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~------------------~~~~gd~V   82 (631)
T PRK07769         21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ------------------VTKPGDRV   82 (631)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH------------------hcCCCCEE
Confidence            36788999999999999999862         2589999999999999999987                  37999999


Q ss_pred             EEEcCCCHhHHHHHHHHHhhCceeeeC-CCCCC--HHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC----CcccccC
Q 017382           72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP  144 (372)
Q Consensus        72 ~l~~~n~~~~~~~~~A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~  144 (372)
                      +++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|++++..+.+........    ..++.+.
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 45554  6789999999999999999876665544332221    1111111


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHH
Q 017382          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH  224 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  224 (372)
                      ....   .  . .  .........++++++|+|||||||.||||++||+++...+......+++..+|++++++|++|..
T Consensus       163 ~~~~---~--~-~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        163 AVPD---E--V-G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM  234 (631)
T ss_pred             cccc---c--c-c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence            1000   0  0 0  00011234578999999999999999999999999998888888888889999999999999999


Q ss_pred             HHHHHHHHHHHcCceEEEcCC--C--chhHHHHHHHhhCCCCCCCCCcce---eEeecchHHHHHHHHhhhhccHHHHHh
Q 017382          225 GLFNALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAI---TAFTGVPTMYTRLIQGYEAMDTELQAA  297 (372)
Q Consensus       225 ~~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~~---t~~~~~p~~~~~l~~~~~~~~~~~~~~  297 (372)
                      |+.. ++.+++.|+++++.++  +  ++..+++.          +.++++   +++..+|+++..+...... .  ....
T Consensus       235 gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~p~~~~~l~~~~~~-~--~~~~  300 (631)
T PRK07769        235 GLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRE----------LARKPGGTGGTFSAAPNFAFEHAAARGL-P--KDGE  300 (631)
T ss_pred             hhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHH----------HHhhccccCceEeeCCchHHHHHHhhcc-c--hhcc
Confidence            9975 5566778999888753  4  78888887          566664   7899999988776542100 0  0001


Q ss_pred             hhhhccCceEEEecCCCCCHHHHHHHHHHh---CC---ccccccccccccccccCCCCCC--------------------
Q 017382          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNPLRGA--------------------  351 (372)
Q Consensus       298 ~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~---~~---~l~~~YG~tE~~~~~~~~~~~~--------------------  351 (372)
                      ...+++++|.+++||+++++++.+.|.+.|   |.   .+++.||+||++.+++......                    
T Consensus       301 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  380 (631)
T PRK07769        301 PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEV  380 (631)
T ss_pred             cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEec
Confidence            134789999999999999999999999987   33   5999999999876554321110                    


Q ss_pred             -------CCCCcccccCCCceEEEeec
Q 017382          352 -------RKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       352 -------~~~~svG~p~~g~~i~Ivd~  371 (372)
                             ....++|+|+++++++|+|.
T Consensus       381 ~~~~~~~~~~~s~G~~~~~~~~~ivd~  407 (631)
T PRK07769        381 PADAPNAVAQVSAGKVGVSEWAVIVDP  407 (631)
T ss_pred             CCCCCCceeEEeCCCcCCCcEEEEEcC
Confidence                   01258999999999999984

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-41  Score=329.94  Aligned_cols=336  Identities=20%  Similarity=0.255  Sum_probs=266.4

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.+.++++.+|+++|+.+.++.+||.||.+++.++|+.|.+                 .|+++||+|+++++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~-----------------~g~~~g~~V~i~~~n~~~   95 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQ-----------------RGVGAGDRVAVFLPNCPQ   95 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCcH
Confidence            367889999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCC-------CC--
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV-------SS--  151 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--  151 (372)
                      ++++++|++++|++++|++|..+.+++.+++++++++++++++...+.+.+.........+.+......       ..  
T Consensus        96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  175 (567)
T PRK06178         96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPD  175 (567)
T ss_pred             HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccc
Confidence            999999999999999999999999999999999999999999887777666543332221111110000       00  


Q ss_pred             -----------Ccccccc----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh-hcccCCCCeEE
Q 017382          152 -----------ETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFL  215 (372)
Q Consensus       152 -----------~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~d~~l  215 (372)
                                 .......    ..........++++++|+|||||||.||+|++||.++......... ...+..+|+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l  255 (567)
T PRK06178        176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFL  255 (567)
T ss_pred             ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEE
Confidence                       0000000    0001122345789999999999999999999999999876655443 35678899999


Q ss_pred             EecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHH
Q 017382          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ  295 (372)
Q Consensus       216 ~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  295 (372)
                      .++|++|..|+...++.+++.|+++++.+++++..++..          ++++++|.+.++|..+..+++...       
T Consensus       256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~l~~~~~-------  318 (567)
T PRK06178        256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA----------VERYRVTRTVMLVDNAVELMDHPR-------  318 (567)
T ss_pred             EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCC-------
Confidence            999999999987678889999999999999999999998          788999999999999988876421       


Q ss_pred             HhhhhhccCceEEEe--cCCCCCHHHHHHHHHHhCCcccc-ccccccccccccCCC--C-----CCCCCCcccccCCCce
Q 017382          296 AASASAAKQLRLMMC--GSSALPLPVMQQWETITGHRLLE-RYGMTEFVMAISNPL--R-----GARKAGTVGNPLPGVQ  365 (372)
Q Consensus       296 ~~~~~~l~~lr~v~~--gG~~~~~~~~~~~~~~~~~~l~~-~YG~tE~~~~~~~~~--~-----~~~~~~svG~p~~g~~  365 (372)
                       ..+.++++++.+..  .|+++++++.+.|++.+|..++. .||+||++.......  .     ...+++++|+|+||++
T Consensus       319 -~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~  397 (567)
T PRK06178        319 -FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTE  397 (567)
T ss_pred             -CCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcE
Confidence             22345677887654  45899999999999999887775 799999875443211  1     1234578999999999


Q ss_pred             EEEeec
Q 017382          366 VSMILL  371 (372)
Q Consensus       366 i~Ivd~  371 (372)
                      ++|+|+
T Consensus       398 v~v~d~  403 (567)
T PRK06178        398 FKICDF  403 (567)
T ss_pred             EEEEcC
Confidence            999984

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4.1e-41  Score=335.54  Aligned_cols=333  Identities=15%  Similarity=0.132  Sum_probs=248.5

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC-----ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      |+.+.+.++   +++++|+++.+     +++||+||.+++.++|+.|++                 +|+++||+|+++++
T Consensus        88 n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i~~~  147 (652)
T TIGR01217        88 NYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-----------------LGVRPGDRVSGYLP  147 (652)
T ss_pred             eHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            455555554   47889988732     589999999999999999998                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC--CcccccCC
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG--AKFSLIPP  145 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~--~~~~~~~~  145 (372)
                      |+++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.++....+  ..++.+..
T Consensus       148 n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~  227 (652)
T TIGR01217       148 NIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY  227 (652)
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeC
Confidence            9999999999999999999999999999999999999999999998753         334444433322  11111111


Q ss_pred             CCC----C---CCCccccc---c--cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHH-HHHHHHhhcccCCCC
Q 017382          146 VPN----V---SSETTVFD---Q--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSAD  212 (372)
Q Consensus       146 ~~~----~---~~~~~~~~---~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d  212 (372)
                      ...    .   .......+   .  ...........+++++|+|||||||.||||+++|.+++. ........++++++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d  307 (652)
T TIGR01217       228 LGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGD  307 (652)
T ss_pred             CCCcccccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCc
Confidence            000    0   00000000   0  000111234568999999999999999999999999754 344445567889999


Q ss_pred             eEEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh
Q 017382          213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (372)
Q Consensus       213 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  288 (372)
                      ++++..|+.|+.+.  .++.+|+.|+++++.+.    .++..+++.          ++++++|++..+|+++..+.+...
T Consensus       308 ~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~~~  375 (652)
T TIGR01217       308 RLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDI----------AERTGATLFGTSAKYVMACRKAGV  375 (652)
T ss_pred             EEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHH----------HHHhCCeEEecCHHHHHHHHhcCC
Confidence            99999999998643  25678999999999863    267788888          888999999887777766644210


Q ss_pred             hccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC--Ccccccccccccccccc-CCCCCCCCCCcccccCCCce
Q 017382          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG--HRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQ  365 (372)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~-~~~~~~~~~~svG~p~~g~~  365 (372)
                            ......++++||.+++||+++++++.+.+.+.++  ..+.+.||+||++.... .........+++|.|.+|++
T Consensus       376 ------~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~  449 (652)
T TIGR01217       376 ------HPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTA  449 (652)
T ss_pred             ------CccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCc
Confidence                  0123457899999999999999999999998885  45678999999753332 22222345688999999999


Q ss_pred             EEEeecC
Q 017382          366 VSMILLL  372 (372)
Q Consensus       366 i~Ivd~d  372 (372)
                      ++|+|+|
T Consensus       450 v~ivd~~  456 (652)
T TIGR01217       450 VQSWDPE  456 (652)
T ss_pred             eEEECCC
Confidence            9999975

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.5e-41  Score=365.41  Aligned_cols=331  Identities=16%  Similarity=0.174  Sum_probs=259.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      ++++.|.++++.+|+++|+++         +++++||+||.++++++|++|.+.                 |+++||+|+
T Consensus       237 ~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~  299 (1389)
T TIGR03443       237 AIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKT-----------------GIKRGDVVM  299 (1389)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEE
Confidence            477889999999999999985         457899999999999999999994                 999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---HHHHHHHHhhcC-----CcccccC
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---REVLQNVASKSG-----AKFSLIP  144 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~~~-----~~~~~~~  144 (372)
                      ++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++...   ...+........     .....+.
T Consensus       300 i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (1389)
T TIGR03443       300 IYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQ  379 (1389)
T ss_pred             EEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEec
Confidence            99999999999999999999999999999999999999999999999987642   111111111000     0000010


Q ss_pred             CCCCC-----CCC-cccccc----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeE
Q 017382          145 PVPNV-----SSE-TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF  214 (372)
Q Consensus       145 ~~~~~-----~~~-~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~  214 (372)
                      .....     ... ......    ..........++++++|+|||||||.||||+++|+++...+......+++.++|++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~  459 (1389)
T TIGR03443       380 DDGSLVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF  459 (1389)
T ss_pred             ccccccccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence            00000     000 000000    00011123457899999999999999999999999999998888888899999999


Q ss_pred             EEecCchhHHHHHHHHHHHHHcCceEEEcCCC---chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhcc
Q 017382          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (372)
Q Consensus       215 l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  291 (372)
                      +...|++|..++. .++.+|+.|+++++.+..   ++..+++.          ++++++|++.++|+++..+....    
T Consensus       460 ~~~~~~~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~----  524 (1389)
T TIGR03443       460 TMLSGIAHDPIQR-DMFTPLFLGAQLLVPTADDIGTPGRLAEW----------MAKYGATVTHLTPAMGQLLSAQA----  524 (1389)
T ss_pred             EEecCceecchHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcc----
Confidence            9999999998885 689999999999998753   56677777          78899999999999998886431    


Q ss_pred             HHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCC---CCC--------CCCCCcccc
Q 017382          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP---LRG--------ARKAGTVGN  359 (372)
Q Consensus       292 ~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~---~~~--------~~~~~svG~  359 (372)
                             ...++++|.+++||+++++...+.+.+.+ +.+++|.||+||++..++..   ...        .....++|+
T Consensus       525 -------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  597 (1389)
T TIGR03443       525 -------TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGK  597 (1389)
T ss_pred             -------cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCC
Confidence                   23578999999999999999999998876 78999999999997654421   000        113467999


Q ss_pred             cCCCceEEEeec
Q 017382          360 PLPGVQVSMILL  371 (372)
Q Consensus       360 p~~g~~i~Ivd~  371 (372)
                      |+++++++|+|.
T Consensus       598 ~~~~~~~~ivd~  609 (1389)
T TIGR03443       598 GMKNVQLLVVNR  609 (1389)
T ss_pred             ccCCCEEEEECC
Confidence            999999999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-41  Score=327.02  Aligned_cols=324  Identities=20%  Similarity=0.271  Sum_probs=258.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|.+++.  ++++|++++++++||.||.++++++|++|+++                .|++++++|+++++|++++
T Consensus         6 ~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~----------------~~~~~~~~V~i~~~n~~~~   67 (529)
T PRK07867          6 TVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRAR----------------LDPTRPPHVGVLLDNTPEF   67 (529)
T ss_pred             cHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCCHHH
Confidence            57788888885  79999999999999999999999999999984                2788999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|+++..+.+++.+++++++++++|++++..+.+..+..  ....+.+... .+........ ...
T Consensus        68 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~l~~~~-~~~  143 (529)
T PRK07867         68 SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDP--GVRVINVDSP-AWADELAAHR-DAE  143 (529)
T ss_pred             HHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhcc--CceEEEeccc-cHHHHhcccC-CCC
Confidence            99999999999999999999999999999999999999999887765554321  1111111110 0000000000 001


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||.||+|++||+++..+.......+++..+|+++..+|++|..++...++.++..|++++
T Consensus       144 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  223 (529)
T PRK07867        144 PPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA  223 (529)
T ss_pred             CCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence            11223467899999999999999999999999999888888888899999999999999999999877888899999999


Q ss_pred             EcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHH
Q 017382          242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ  321 (372)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~  321 (372)
                      +.+.+++..+++.          ++++++|++.++|+.+..++.....        .....+++|. ++||+++++.. +
T Consensus       224 ~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~ll~~~~~--------~~~~~~~lr~-~~gg~~~~~~~-~  283 (529)
T PRK07867        224 LRRKFSASGFLPD----------VRRYGATYANYVGKPLSYVLATPER--------PDDADNPLRI-VYGNEGAPGDI-A  283 (529)
T ss_pred             ecCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCCc--------ccccccceEE-EecCCCChHHH-H
Confidence            9999999999988          7889999999999999988764221        1112357885 56888887664 6


Q ss_pred             HHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          322 QWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       322 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      .|.+.+|.++++.||+||+++......  ....+++|+|++|  ++|+|.
T Consensus       284 ~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~  329 (529)
T PRK07867        284 RFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDP  329 (529)
T ss_pred             HHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--EEEEEC
Confidence            777788999999999999986554322  2355789999999  667763

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=6.8e-41  Score=327.69  Aligned_cols=336  Identities=18%  Similarity=0.217  Sum_probs=263.7

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.+.++++  |+++|++++++.+||+||.++++++|+.|.+                 .|+++|++|+++++|++++
T Consensus        26 ~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-----------------~g~~~g~~V~v~~~n~~~~   86 (536)
T PRK10946         26 PLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRR-----------------QGIKPGDTALVQLGNVAEF   86 (536)
T ss_pred             cHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCChHHH
Confidence            56788888887  9999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC-CcccccCCCCCCCCCccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETTV  155 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  155 (372)
                      +++++||+++|++++++.+.....++.++++.+++++++++++..     .....+..... ...+..............
T Consensus        87 ~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  166 (536)
T PRK10946         87 YITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDA  166 (536)
T ss_pred             HHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHH
Confidence            999999999999888877777888899999999999999986421     11222222111 111111111000000000


Q ss_pred             cccc-ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHHH
Q 017382          156 FDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAP  233 (372)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~~  233 (372)
                      .... .........++++++++|||||||.||+|++||+++...+......+.+.++|++++.+|++|.+++.. .++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~  246 (536)
T PRK10946        167 INHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGV  246 (536)
T ss_pred             hhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHH
Confidence            0000 011122345789999999999999999999999999999988888889999999999999999888753 56788


Q ss_pred             HHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      +..|+++++.+.+++..+++.          ++++++|++.++|+++..+++....      ......++++|.+++||+
T Consensus       247 l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~  310 (536)
T PRK10946        247 FLAGGTVVLAPDPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQAIAE------GGSRAQLASLKLLQVGGA  310 (536)
T ss_pred             hhcCcEEEECCCCCHHHHHHH----------HHHhCCcEEEeChHHHHHHHhhhcc------cCccccccceeEEEECCC
Confidence            999999999998999998888          7889999999999999999875311      112235689999999999


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccCC-CCCCCCCCcccccC-CCceEEEeecC
Q 017382          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVSMILLL  372 (372)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~-~g~~i~Ivd~d  372 (372)
                      ++++++.+.|.+.+|+++++.||+||++...... .......+++|+|+ |+++++|+|.+
T Consensus       311 ~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~  371 (536)
T PRK10946        311 RLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADAD  371 (536)
T ss_pred             CCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCC
Confidence            9999999999999999999999999976443321 11234568899999 79999999864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.9e-41  Score=327.74  Aligned_cols=320  Identities=19%  Similarity=0.307  Sum_probs=254.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccC-CCCCEEEEEcCCCHh
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFE   80 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv-~~gd~V~l~~~n~~~   80 (372)
                      |+.+.+.+++  +|+++|+++++..+||.||.++++++|..|.+                 +|+ ++||+|+++++|+++
T Consensus         4 ~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~-----------------~g~~~~~~~V~i~~~n~~~   64 (540)
T PRK13388          4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIA-----------------LADPDRPLHVGVLLGNTPE   64 (540)
T ss_pred             hHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------hcCCCCCCEEEEECCCCcH
Confidence            5667777765  69999999999999999999999999999999                 499 799999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|++|.++.+++.+++++++++++|++++..+.+.+... .....+.+.. ..+.....  ....
T Consensus        65 ~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~i~~~~-~~~~~~~~--~~~~  140 (540)
T PRK13388         65 MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDL-PGVRVLDVDT-PAYAELVA--AAGA  140 (540)
T ss_pred             HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcc-cCceEEEccc-hhhhhhhc--cccC
Confidence            999999999999999999999999999999999999999999877665544311 0112222111 00000000  0000


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++|+|||||||.||+|.++|+++...+......+++..+|+++..+|++|..++...++.++..|+++
T Consensus       141 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~  220 (540)
T PRK13388        141 LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAV  220 (540)
T ss_pred             cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEE
Confidence            11112346789999999999999999999999999988888888889999999999999999998876666789999999


Q ss_pred             EEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      ++.+.+++..+++.          ++++++|++..+|+.+..+......        ......+++.+ + |++++++..
T Consensus       221 v~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~l~~l~~~~~~--------~~~~~~~l~~~-~-G~~~~~~~~  280 (540)
T PRK13388        221 ALPAKFSASGFLDD----------VRRYGATYFNYVGKPLAYILATPER--------PDDADNPLRVA-F-GNEASPRDI  280 (540)
T ss_pred             EECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCCCC--------ccccccceEEE-E-CCCCCHHHH
Confidence            99998999999988          8889999999999999888764221        11123456643 3 667788888


Q ss_pred             HHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceE
Q 017382          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV  366 (372)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i  366 (372)
                      +.|.+.++.++++.||+||++.++....  ....+++|+|++|+++
T Consensus       281 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i  324 (540)
T PRK13388        281 AEFSRRFGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPGVAI  324 (540)
T ss_pred             HHHHHHhCCceecccccccccceeecCC--CCCCCCCCCCCCCcEE
Confidence            9999889999999999999987665332  2456899999999775

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.4e-40  Score=325.95  Aligned_cols=333  Identities=22%  Similarity=0.340  Sum_probs=259.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.+.++++.+|+++|++.+++.+||.||.++++++|+.|.+                 .|+++||+|+++++|++++
T Consensus        22 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~-----------------~gi~~g~~V~i~~~~~~~~   84 (541)
T TIGR03205        22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLR-----------------AGYGKDASVALYLGNTPDH   84 (541)
T ss_pred             CHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChHH
Confidence            57788999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch--HHHHHHHHhh-cCCcccccCCCC--CC-------
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY--REVLQNVASK-SGAKFSLIPPVP--NV-------  149 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~-~~~~~~~~~~~~--~~-------  149 (372)
                      +++++|++++|++++|+++..+.+++.++++.++++++|+++..  .+...+.... .....++.....  ..       
T Consensus        85 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (541)
T TIGR03205        85 PINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPI  164 (541)
T ss_pred             HHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEeccccccccccccccc
Confidence            99999999999999999999999999999999999999998632  1112121111 111111111100  00       


Q ss_pred             CCC------cccccc-cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc------ccCCCCeEEE
Q 017382          150 SSE------TTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EYTSADQFLH  216 (372)
Q Consensus       150 ~~~------~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~d~~l~  216 (372)
                      ...      ....+. ..........++++++++|||||||.||+|+++|+++....... ..+      .....+++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~  243 (541)
T TIGR03205       165 PADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVIC  243 (541)
T ss_pred             CCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEE
Confidence            000      000000 00111123456899999999999999999999999987654322 111      2234578999


Q ss_pred             ecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHH
Q 017382          217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (372)
Q Consensus       217 ~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~  296 (372)
                      ..|++|..++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+..        .
T Consensus       244 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~  305 (541)
T TIGR03205       244 VLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD----------IEEKRATVFPGVPTMWIALANDP--------S  305 (541)
T ss_pred             eccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCeEeechHHHHHHHHhCc--------c
Confidence            99999999987778889999999999988999999998          78899999999999999887641        1


Q ss_pred             hhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCC-CCCCCCCCcccccCCCceEEEee
Q 017382          297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       297 ~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      ....+++++|.+++||+++++++.+.+.+.++.++++.||+||++..++.. ......++++|+|+++++++|++
T Consensus       306 ~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~  380 (541)
T TIGR03205       306 LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVS  380 (541)
T ss_pred             ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEe
Confidence            223467899999999999999999999988899999999999998665532 22234567899999999999875

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-40  Score=329.03  Aligned_cols=336  Identities=20%  Similarity=0.289  Sum_probs=263.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC---CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      +|+.+.|..+++.+|+++|++++   ++++||+||.++++++|..|.+.                .|+++||+|+++++|
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~gd~V~~~~~n   73 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDE----------------LGITGDQRVGSMMYN   73 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence            57889999999999999999875   37999999999999999999862                499999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc--ccccCCCCC------C
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPN------V  149 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~  149 (372)
                      +++++++++||.++|++++|+++..+.+++.++++.++++++|+++...+.+.+........  ++.+.....      .
T Consensus        74 ~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  153 (576)
T PRK05620         74 CAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHM  153 (576)
T ss_pred             CHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhcc
Confidence            99999999999999999999999999999999999999999999988777666554433211  111111000      0


Q ss_pred             CC------Ccccccc-cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHH--HhhcccCCCCeEEEecCc
Q 017382          150 SS------ETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPL  220 (372)
Q Consensus       150 ~~------~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl  220 (372)
                      ..      .....+. ..........++++++++|||||||.||+|.++|+++.......  ...+.+..+|++++.+|+
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl  233 (576)
T PRK05620        154 PEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPI  233 (576)
T ss_pred             ccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCCh
Confidence            00      0000000 00011223456899999999999999999999999986554432  335678899999999999


Q ss_pred             hhHHHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382          221 HHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (372)
Q Consensus       221 ~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  299 (372)
                      +|.+++. ..+.++..|+++++.+ .+++..+++.          ++++++|+++++|+++..++.....        ..
T Consensus       234 ~h~~g~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~  294 (576)
T PRK05620        234 YHVLSWG-VPLAAFMSGTPLVFPGPDLSAPTLAKI----------IATAMPRVAHGVPTLWIQLMVHYLK--------NP  294 (576)
T ss_pred             HHhhhhH-HHHHHHhcCceEEecCCCCCHHHHHHH----------HHHhcCceeeecCHHHHHHHHHhhc--------cC
Confidence            9999985 4678899999999875 4788888888          7889999999999999988764211        11


Q ss_pred             hhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCC--------CCCCCcccccCCCceEEEeec
Q 017382          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--------ARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       300 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--------~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      .+..++|.+++||+++++++.+.|.+.+|.++++.||+||++..++.....        .....++|++.+|++++|+|+
T Consensus       295 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~  374 (576)
T PRK05620        295 PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND  374 (576)
T ss_pred             cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC
Confidence            234589999999999999999999999999999999999998654321111        012357899999999999874

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.8e-41  Score=328.70  Aligned_cols=335  Identities=19%  Similarity=0.281  Sum_probs=261.9

Q ss_pred             CHHHHHHHHhCCcCCCceEEEe--CC--ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRA--DQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~--~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      +|+.+.|..+++++||+++++.  ++  +++||+||.++++++|+.|.+                 .|+++||+|+++++
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-----------------~g~~~gd~v~i~~~   72 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-----------------DGIKLGDRVATIAW   72 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            4778899999999999999984  23  789999999999999999999                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCC--
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSE--  152 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--  152 (372)
                      |+++++++++|++++|++++|+++..+.+++.++++.++++.++++.+..+.+.+.......  ....+.........  
T Consensus        73 ~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (542)
T PRK06018         73 NTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTL  152 (542)
T ss_pred             CchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCc
Confidence            99999999999999999999999999999999999999999999998877776665443321  11111111100000  


Q ss_pred             ---ccc---ccccc-cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHH--HHHHHHhhcccCCCCeEEEecCchhH
Q 017382          153 ---TTV---FDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHV  223 (372)
Q Consensus       153 ---~~~---~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~~~  223 (372)
                         ...   ..... ........++++++|+|||||||.||+|.+||++.+.  ........+++..+|+++...|++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~  232 (542)
T PRK06018        153 KNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHA  232 (542)
T ss_pred             cccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHH
Confidence               000   00000 0011234567899999999999999999999997532  22233456678899999999999999


Q ss_pred             HHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhc
Q 017382          224 HGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (372)
Q Consensus       224 ~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l  302 (372)
                      .++.. .+.++..|+++++.. .+++..+++.          ++++++|++.++|+++..+.+....        ...++
T Consensus       233 ~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~  293 (542)
T PRK06018        233 NSWGI-AFSAPSMGTKLVMPGAKLDGASVYEL----------LDTEKVTFTAGVPTVWLMLLQYMEK--------EGLKL  293 (542)
T ss_pred             hhhHH-HHhhhhcCceEEccCcCCCHHHHHHH----------HHhcCCceeecCcHHHHHHHhcccc--------cCCCc
Confidence            88854 567789999998874 5678888887          7889999999999999998875322        22356


Q ss_pred             cCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC--CC---------CCCCCcccccCCCceEEEeec
Q 017382          303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL--RG---------ARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       303 ~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~---------~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +++|.+++||+++++++.+.|++ ++.++++.||+||++.+.+...  ..         .....++|+|++|++++|+|.
T Consensus       294 ~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~  372 (542)
T PRK06018        294 PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD  372 (542)
T ss_pred             ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC
Confidence            88999999999999999999999 8999999999999986544211  10         012367999999999999986


Q ss_pred             C
Q 017382          372 L  372 (372)
Q Consensus       372 d  372 (372)
                      +
T Consensus       373 ~  373 (542)
T PRK06018        373 A  373 (542)
T ss_pred             C
Confidence            4

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-41  Score=329.80  Aligned_cols=336  Identities=25%  Similarity=0.400  Sum_probs=261.4

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.+.++++.+|+++|++++++.+||+||.+++.++|+.|.+                 .|+++||+|+++++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~-----------------~gv~~gd~V~i~~~~~~~   86 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQK-----------------LGVEKGDRVAIMLPNCPQ   86 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence            367888999999999999999999999999999999999999988                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCC---C-------
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV---S-------  150 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------  150 (372)
                      ++++++||+++|++++|++|..+.+++.++++.++++.+++++.....+.............+......   .       
T Consensus        87 ~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (563)
T PRK06710         87 AVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF  166 (563)
T ss_pred             HHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccch
Confidence            999999999999999999999999999999999999999999865544333221111110000000000   0       


Q ss_pred             -------------CC------cccccccccc-cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh-hcccC
Q 017382          151 -------------SE------TTVFDQSQAE-KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYT  209 (372)
Q Consensus       151 -------------~~------~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~  209 (372)
                                   ..      .......... .......+++++++|||||||.||+|.++|+++..+...... .+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  246 (563)
T PRK06710        167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCK  246 (563)
T ss_pred             hhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCC
Confidence                         00      0000000000 011123478999999999999999999999999765443332 23333


Q ss_pred             -CCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh
Q 017382          210 -SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (372)
Q Consensus       210 -~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  288 (372)
                       ..+++++.+|++|.++....++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...
T Consensus       247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~  316 (563)
T PRK06710        247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA----------IKKHKVTLFPGAPTIYIALLNSPL  316 (563)
T ss_pred             CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcCCc
Confidence             346889999999999987666778999999999999999999888          788999999999999998876421


Q ss_pred             hccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC-CCCCCCCcccccCCCceEE
Q 017382          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVS  367 (372)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i~  367 (372)
                              ....+++++|.+++||+++++++.+++.+.++.++++.||+||++.++.... ......+++|+|+++++++
T Consensus       317 --------~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  388 (563)
T PRK06710        317 --------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAM  388 (563)
T ss_pred             --------cccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEE
Confidence                    1233568899999999999999999999989999999999999987654322 1234467899999999999


Q ss_pred             Eeec
Q 017382          368 MILL  371 (372)
Q Consensus       368 Ivd~  371 (372)
                      |+|+
T Consensus       389 i~~~  392 (563)
T PRK06710        389 IMSL  392 (563)
T ss_pred             EEEC
Confidence            9984

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=6.3e-41  Score=329.78  Aligned_cols=337  Identities=21%  Similarity=0.299  Sum_probs=262.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|.++++.+|+++|+++.++++||+||.+++.++|+.|.+.                .|+++||+|+++++|++++
T Consensus        26 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~   89 (560)
T PRK08751         26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGE----------------LQLKKGDRVALMMPNCLQY   89 (560)
T ss_pred             cHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHHH
Confidence            567889999999999999999999999999999999999999732                4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCC-------------
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-------------  148 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  148 (372)
                      +++++||+++|++++|++|.++.+++.+++++++++++++++.....+.+.................             
T Consensus        90 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (560)
T PRK08751         90 PIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFV  169 (560)
T ss_pred             HHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhh
Confidence            9999999999999999999999999999999999999999987766655543332211111100000             


Q ss_pred             -------CCC-----Cccccc-----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc----
Q 017382          149 -------VSS-----ETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----  207 (372)
Q Consensus       149 -------~~~-----~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----  207 (372)
                             ...     .....+     ...........++++++++|||||||.||+|.+||.++...+......+.    
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  249 (560)
T PRK08751        170 VKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK  249 (560)
T ss_pred             hhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc
Confidence                   000     000000     00001122345689999999999999999999999999887776655443    


Q ss_pred             cCCC-CeEEEecCchhHHHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382          208 YTSA-DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (372)
Q Consensus       208 ~~~~-d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  285 (372)
                      +..+ ++++...|++|.+++....+.++..|++.++.+ .+++..+++.          ++++++|++.++|+++..+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~  319 (560)
T PRK08751        250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKE----------LKKTRFTAFTGVNTLFNGLLN  319 (560)
T ss_pred             cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHH----------HHhcceeEecChHHHHHHHHc
Confidence            3333 577888999999998655566677777666544 5678888887          889999999999999999887


Q ss_pred             hhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC-CCCCCCCcccccCCCc
Q 017382          286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGV  364 (372)
Q Consensus       286 ~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~  364 (372)
                      ...        ..+.+++++|.+++||+++++++.+.|++.+|.++++.||+||++..++... ......+++|+|++|+
T Consensus       320 ~~~--------~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~  391 (560)
T PRK08751        320 TPG--------FDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPST  391 (560)
T ss_pred             CcC--------cCCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCc
Confidence            521        1234678999999999999999999999988999999999999986554322 2234567899999999


Q ss_pred             eEEEeecC
Q 017382          365 QVSMILLL  372 (372)
Q Consensus       365 ~i~Ivd~d  372 (372)
                      +++|+|.+
T Consensus       392 ~v~i~d~~  399 (560)
T PRK08751        392 DACIKDDA  399 (560)
T ss_pred             eEEEECCC
Confidence            99999853

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=6.8e-41  Score=354.34  Aligned_cols=332  Identities=21%  Similarity=0.331  Sum_probs=263.9

Q ss_pred             HHHHHHHHhCCcCC-CceEEEe-CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMAR-DSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~-~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      ++++.+.++++++| ++.|+.+ +++++||+||.++++++|+.|++                  |+++||+|+++++|++
T Consensus       632 ~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~------------------g~~~gd~V~i~~~n~~  693 (1140)
T PRK06814        632 TLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK------------------NTPPGENVGVMLPNAN  693 (1140)
T ss_pred             CHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEEcCCch
Confidence            45677888888886 5677776 47899999999999999999975                  8999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHH--HHHHhhcC--CcccccCCCCC-CCCCcc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL--QNVASKSG--AKFSLIPPVPN-VSSETT  154 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~-~~~~~~  154 (372)
                      +++++++||+++|++++|+++..+.+++.+++++++++++|++++..+..  ........  ...+.++.... ......
T Consensus       694 ~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  773 (1140)
T PRK06814        694 GAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADK  773 (1140)
T ss_pred             HHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHH
Confidence            99999999999999999999999999999999999999999997654432  11111111  11112211100 000000


Q ss_pred             cc----cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 017382          155 VF----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       155 ~~----~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                      ..    ...+....+...++|+++|+|||||||.||+|.+||+++..++......++++++|++++.+|++|.+++...+
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~  853 (1140)
T PRK06814        774 IKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGL  853 (1140)
T ss_pred             HHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHH
Confidence            00    00000011134678999999999999999999999999999888888888999999999999999999997678


Q ss_pred             HHHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEE
Q 017382          231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~  309 (372)
                      +.++..|+++++.+. .+...+.+.          ++++++|++.++|+++..+.+..          ...+++++|.++
T Consensus       854 ~~~l~~G~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~----------~~~~~~~lr~v~  913 (1140)
T PRK06814        854 VLPLLSGVKVFLYPSPLHYRIIPEL----------IYDTNATILFGTDTFLNGYARYA----------HPYDFRSLRYVF  913 (1140)
T ss_pred             HHHHHcCCEEEEecCcccHHHHHHH----------HHhcCCEEEEecHHHHHHHHhhc----------ccccccceeEEE
Confidence            889999999999875 455566666          78899999999999998886531          234678999999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       310 ~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +||+++++++.+.|.+.+|.++++.||+||++..++.......+.+++|+|+||++++++|.
T Consensus       914 ~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~  975 (1140)
T PRK06814        914 AGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPV  975 (1140)
T ss_pred             EcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeec
Confidence            99999999999999999999999999999998766544333456789999999999999874

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=7.2e-41  Score=325.14  Aligned_cols=324  Identities=16%  Similarity=0.238  Sum_probs=264.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.+.++++.+|+++|+...++.+||+||.+++.++|+.|.+                 .|+++||+|+++++|+.++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~-----------------~g~~~~~~V~i~~~~~~~~   63 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQK-----------------RILPKKSPIIVYGHMEPHM   63 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHH-----------------hCCCCCCeEEEEeCCCHHH
Confidence            57889999999999999999999999999999999999999998                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|+++.++.+++.++++..+++.++++++.......      .....+......     .......
T Consensus        64 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~  132 (502)
T TIGR01734        64 LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG------TQIITLSALEQA-----ETSGGPV  132 (502)
T ss_pred             HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC------CceEEchHhhhh-----hhhcCCc
Confidence            99999999999999999999999999999999999999998764322111      111111100000     0000001


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......+++.++++|||||||.||+|.++|+++...+......+.+..+++++...|++|..++. .++.++..|++++
T Consensus       133 ~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  211 (502)
T TIGR01734       133 SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLH  211 (502)
T ss_pred             cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHH-HHHHHHHCCCEEE
Confidence            111223568899999999999999999999999999888888888889999999999999999885 6888999999999


Q ss_pred             EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.++   .++..+++.          +.+++++.+.++|+++..++...        ......+++++.++++|++++.+
T Consensus       212 ~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~p~~~~~~l~~~--------~~~~~~~~~l~~~~~~G~~~~~~  273 (502)
T TIGR01734       212 CLDKDITNNFKLLFEE----------LPKTGLNVWVSTPSFVDMCLLDP--------NFNQENYPHLTHFLFCGEELPVK  273 (502)
T ss_pred             EcCHHHhcCHHHHHHH----------HHHcCCeEEEEChhHHHHHHhcc--------ccccccCCcccEEEEcCCcCCHH
Confidence            9886   467778877          78899999999999998776541        12334678999999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccCC-----CCCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.+.+.+ ++++++.||+||++..++..     ........++|+|++|++++|+|.+
T Consensus       274 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~  333 (502)
T TIGR01734       274 TAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEE  333 (502)
T ss_pred             HHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCC
Confidence            999999988 78999999999987543311     1123445689999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.6e-40  Score=327.60  Aligned_cols=306  Identities=17%  Similarity=0.262  Sum_probs=242.7

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      |+.+.|.++++.+|+++|++.+++++||+||.++++++|+.|.+                 +|+++||+|+|+++|++++
T Consensus        15 ~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~Gl~~gd~Vai~~~n~~e~   77 (579)
T PLN03102         15 TPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLIS-----------------LNITKNDVVSVLAPNTPAM   77 (579)
T ss_pred             cHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHH
Confidence            46678889999999999999999999999999999999999999                 5999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC-------CcccccCCCCCCC----
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-------AKFSLIPPVPNVS----  150 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----  150 (372)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.++.....       ...+.++......    
T Consensus        78 ~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (579)
T PLN03102         78 YEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS  157 (579)
T ss_pred             HHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcc
Confidence            99999999999999999999999999999999999999999877766655433211       1122221111000    


Q ss_pred             CCccccc---cccc------ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCch
Q 017382          151 SETTVFD---QSQA------EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (372)
Q Consensus       151 ~~~~~~~---~~~~------~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  221 (372)
                      ......+   ....      .......++++++|+|||||||.||+|+++|+++..........+.+...++++..+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  237 (579)
T PLN03102        158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF  237 (579)
T ss_pred             cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChh
Confidence            0000000   0000      001123568999999999999999999999999765554444455667778999999999


Q ss_pred             hHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhh
Q 017382          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (372)
Q Consensus       222 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  301 (372)
                      |..++. ..+.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...        .....
T Consensus       238 h~~g~~-~~~~~~~~g~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~  298 (579)
T PLN03102        238 HCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKN----------IEMHNVTHMCCVPTVFNILLKGNS--------LDLSP  298 (579)
T ss_pred             hhcchh-HHHHHHHhcCcEEeeccCChHHHHHH----------HHHcCCeEEEeChHHHHHHHhCcc--------cccCC
Confidence            999886 45667889999999998899999988          889999999999999999987521        11223


Q ss_pred             ccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccc
Q 017382          302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI  344 (372)
Q Consensus       302 l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~  344 (372)
                      .++++.+++||+++++.+.+.+.+ +|.++++.||+||+++.+
T Consensus       299 ~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~  340 (579)
T PLN03102        299 RSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPV  340 (579)
T ss_pred             cccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccc
Confidence            456788999999999999998875 699999999999987543

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.2e-41  Score=390.37  Aligned_cols=325  Identities=21%  Similarity=0.313  Sum_probs=269.7

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++++|+++|++++++++||+||.++++++|+.|.+                 .|+++|++|+++++|++++
T Consensus       512 ~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~-----------------~gv~~g~~V~l~~~~s~~~  574 (5163)
T PRK12316        512 GVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIE-----------------RGVGPDVLVGVAMERSIEM  574 (5163)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            57899999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++|++++|++++|++|.++.+++.++++++++++++++....+.+...   .....+.++......     ......
T Consensus       575 i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~  646 (5163)
T PRK12316        575 VVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA---AGVQVLDLDRPAAWL-----EGYSEE  646 (5163)
T ss_pred             HHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc---cCceEEEecCcchhh-----ccCCCC
Confidence            999999999999999999999999999999999999999997654332110   011111111111000     000111


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||.||||+++|+++.+.+......++++.+|++++..|++|..+++ .++.+|+.|++++
T Consensus       647 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~  725 (5163)
T PRK12316        647 NPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVW-EFFWPLMSGARLV  725 (5163)
T ss_pred             CCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHH-HHHHHHhCCCEEE
Confidence            112234678999999999999999999999999999999999999999999999999999999986 6899999999999


Q ss_pred             EcC---CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMP---KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.+   .+++..+++.          ++++++|++.++|++++.+.+..          ...+++++|.+++||++++++
T Consensus       726 i~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~----------~~~~~~~l~~~~~gGe~l~~~  785 (5163)
T PRK12316        726 VAAPGDHRDPAKLVEL----------INREGVDTLHFVPSMLQAFLQDE----------DVASCTSLRRIVCSGEALPAD  785 (5163)
T ss_pred             ECCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcc----------ccccCCCccEEEEeeccCCHH
Confidence            986   3788888888          78899999999999999987641          123578999999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccC--CCCCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETIT-GHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~-~~~l~~~YG~tE~~~~~~~--~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.|.+.+ +.+++|.||+||+++.++.  .........++|+|++|++++|+|.+
T Consensus       786 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~  842 (5163)
T PRK12316        786 AQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDAN  842 (5163)
T ss_pred             HHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCC
Confidence            999998776 7899999999999854432  12223456789999999999999864

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.2e-41  Score=384.07  Aligned_cols=326  Identities=23%  Similarity=0.351  Sum_probs=268.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++++|+++|++++++.+||+||.++++++|+.|.+.                 |+++|++|++++++++++
T Consensus      1575 ~~~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~~~~V~l~~~~s~~~ 1637 (3956)
T PRK12467       1575 LVHQLIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIAL-----------------GVGPEVLVGIAVERSLEM 1637 (3956)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeCCcEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEccCCHHH
Confidence            578899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++|++++|++++|++|.++.+++.++++++++++++++....+.+...   .......++....+.     ......
T Consensus      1638 vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~ 1709 (3956)
T PRK12467       1638 VVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP---DGLRSLVLDQEDDWL-----EGYSDS 1709 (3956)
T ss_pred             HHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc---cCCcEEEeccccchh-----ccCCCC
Confidence            999999999999999999999999999999999999999987654332110   011111111111000     001111


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||+||||+++|+++.+.+......++++.+|++++..|++|..+++ .++.+|+.|++++
T Consensus      1710 ~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 1788 (3956)
T PRK12467       1710 NPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVW-ELFWPLINGARLV 1788 (3956)
T ss_pred             CCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHH-HHHHHHhCCCEEE
Confidence            122334678999999999999999999999999999999988889999999999999999999986 6889999999999


Q ss_pred             EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.+.   .++..+++.          ++++++|++.++|+++..+.+...         ...+++++|.+++|||+++++
T Consensus      1789 i~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~---------~~~~~~~lr~v~~gGe~l~~~ 1849 (3956)
T PRK12467       1789 IAPPGAHRDPEQLIQL----------IERQQVTTLHFVPSMLQQLLQMDE---------QVEHPLSLRRVVCGGEALEVE 1849 (3956)
T ss_pred             EcChhhcCCHHHHHHH----------HHHcCCeEEECCHHHHHHHHhhcc---------ccccCCCceEEEEccccCCHH
Confidence            9874   467888888          888999999999999999876311         123578999999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccCCC-----CCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETIT-GHRLLERYGMTEFVMAISNPL-----RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-----~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.|.+.+ +..++|.||+||+++.++...     .......++|+|++|++++|+|.+
T Consensus      1850 ~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~ 1909 (3956)
T PRK12467       1850 ALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDAS 1909 (3956)
T ss_pred             HHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCC
Confidence            999998887 578999999999986654211     112235789999999999999863

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=3.6e-41  Score=306.56  Aligned_cols=307  Identities=21%  Similarity=0.226  Sum_probs=257.4

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCC--ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      |+++.|..+++++|+++|+++++  +++||+|+.+.+.++|+.|..+                 |++.||.|++.|+|.+
T Consensus        78 ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~-----------------~l~~GD~VAL~men~p  140 (649)
T KOG1179|consen   78 TIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAE-----------------GLKAGDVVALLMENRP  140 (649)
T ss_pred             cHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHh-----------------hcccCCEEEEecCCCh
Confidence            68899999999999999999977  6999999999999999999996                 8999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCccc---ccCCCCCCCCCcccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS---LIPPVPNVSSETTVF  156 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  156 (372)
                      ||+.++++++++|++...||+++..+.+.|-++.++++.+|++.+..+.+.++.+.+...-+   ............+..
T Consensus       141 efv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~  220 (649)
T KOG1179|consen  141 EFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLL  220 (649)
T ss_pred             hHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999988887777444332211   111111111101110


Q ss_pred             ----ccc----ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH
Q 017382          157 ----DQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (372)
Q Consensus       157 ----~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~  228 (372)
                          ...    +........-.++++.+|||||||.||+.+++|......+.-....+++++.|+++..+|++|.++.+.
T Consensus       221 ~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~il  300 (649)
T KOG1179|consen  221 AKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGIL  300 (649)
T ss_pred             HhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHH
Confidence                111    112233445578999999999999999999999998887777788889999999999999999999999


Q ss_pred             HHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEE
Q 017382          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (372)
Q Consensus       229 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v  308 (372)
                      ++..++..|+|+++.++|++..+|+.          ..+|++|++--.-.+.+.|++.+.+        +...-+++|..
T Consensus       301 Gi~~~l~~GaT~VlrkKFSAS~FW~D----------C~k~~~Tv~QYIGElcRYLl~~p~~--------~~er~HkVRla  362 (649)
T KOG1179|consen  301 GIGGCLLHGATVVLRKKFSASNFWDD----------CRKYNVTVIQYIGELCRYLLNQPPS--------PEERQHKVRLA  362 (649)
T ss_pred             HHHHHHhcCceEEEecccchhhhHHH----------HHHhCCeeeehHHHHHHHHHcCCCC--------hhhcCceEEEE
Confidence            99999999999999999999999999          7889999999999999999886432        22244678887


Q ss_pred             EecCCCCCHHHHHHHHHHhCCc-ccccccccccccccc
Q 017382          309 MCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAIS  345 (372)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~~~-l~~~YG~tE~~~~~~  345 (372)
                      +  |..+.+++++.|.+.||+. +.+.||+||......
T Consensus       363 ~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~  398 (649)
T KOG1179|consen  363 Y--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLV  398 (649)
T ss_pred             e--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceee
Confidence            7  8999999999999999875 999999999875444

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3.2e-40  Score=320.61  Aligned_cols=325  Identities=19%  Similarity=0.241  Sum_probs=264.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+.+.|.++++.+|+++|+..+++++||.||.+++.++|..|.+.                 |+++|++|+++++|+.+
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~-----------------g~~~~~~v~~~~~~~~~   64 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSL-----------------KLPDKSPIIVFGHMSPE   64 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHH
Confidence            7899999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      +++.++|++++|++++|+++.++.+++.++++..++++++++++....      ..........   .....  ......
T Consensus        65 ~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~--~~~~~~  133 (503)
T PRK04813         65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE------ILGIPVITLD---ELKDI--FATGNP  133 (503)
T ss_pred             HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc------ccCCcEEehH---Hhhhh--hhcccc
Confidence            999999999999999999999999999999999999999998754110      0000000000   00000  000001


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++++|||||||.||+|.++|+++...+......+.+..+++++...|++|..++. .++.++..|+++
T Consensus       134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~  212 (503)
T PRK04813        134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVM-DLYPTLASGGTL  212 (503)
T ss_pred             ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHH-HHHHHHhcCCEE
Confidence            1112234568899999999999999999999999999888888888889999999999999999885 578899999999


Q ss_pred             EEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      ++.+.   .++..+++.          ++++++|++..+|+++..+....        .....+++++|.++++|+++++
T Consensus       213 v~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~--------~~~~~~~~~l~~i~~~G~~l~~  274 (503)
T PRK04813        213 VALPKDMTANFKQLFET----------LPQLPINVWVSTPSFADMCLLDP--------SFNEEHLPNLTHFLFCGEELPH  274 (503)
T ss_pred             EEcChhhhcCHHHHHHH----------HHHcCCeEEEeChHHHHHHHHhh--------ccCcccCCCceEEEEecCcCCH
Confidence            99886   467778777          78899999999999998765531        1233467899999999999999


Q ss_pred             HHHHHHHHHh-CCccccccccccccccccCC---C--CCCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNP---L--RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~---~--~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+.+.+.+.| +..+++.||+||++...+..   .  .......++|+|.++++++|+|.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~  335 (503)
T PRK04813        275 KTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEE  335 (503)
T ss_pred             HHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCC
Confidence            9999999998 78999999999987544321   1  112455689999999999999864

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-40  Score=323.17  Aligned_cols=337  Identities=22%  Similarity=0.304  Sum_probs=262.3

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++.+.|.++++.+|+++|+.++++.+||.||.+++.++|..|.+.                .|+++||+|+++++|++++
T Consensus        24 ~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~   87 (560)
T PRK08974         24 SLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNG----------------LGLKKGDRVALMMPNLLQY   87 (560)
T ss_pred             cHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            477889999999999999999999999999999999999999842                4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCC-CCCCC----------
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPNVS----------  150 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------  150 (372)
                      +++++||+++|++++|+++..+.+++.++++.++++.++++++..+.+.++........+.... .....          
T Consensus        88 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (560)
T PRK08974         88 PIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFV  167 (560)
T ss_pred             HHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccch
Confidence            9999999999999999999999999999999999999999877665555443221111111000 00000          


Q ss_pred             --------------CCcccccc-----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc---c
Q 017382          151 --------------SETTVFDQ-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---Y  208 (372)
Q Consensus       151 --------------~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~  208 (372)
                                    ......+.     ..........++++++|+|||||||.||+|.++|.++..++......+.   .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~  247 (560)
T PRK08974        168 VKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH  247 (560)
T ss_pred             hhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccC
Confidence                          00000000     0000112245789999999999999999999999999887665443332   2


Q ss_pred             CCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhh
Q 017382          209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (372)
Q Consensus       209 ~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  287 (372)
                      ...+.++..+|++|.+++....+.++..|+++++.. ..++..+++.          ++++++|.+.++|+++..+.+..
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~  317 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE----------LKKYPFTAITGVNTLFNALLNNE  317 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHH----------HHhcCcceEcCcHHHHHHHHhCc
Confidence            346788899999999987666677788998877654 4577777777          78899999999999999987652


Q ss_pred             hhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCC-CCCCCCCcccccCCCceE
Q 017382          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQV  366 (372)
Q Consensus       288 ~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i  366 (372)
                      .        ....+++++|.+++||+++++.+.+.|.+.+|.++++.||+||++..++... ......+++|+|+||+++
T Consensus       318 ~--------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~  389 (560)
T PRK08974        318 E--------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEI  389 (560)
T ss_pred             C--------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEE
Confidence            1        2234678999999999999999999999988999999999999886655332 223456789999999999


Q ss_pred             EEeecC
Q 017382          367 SMILLL  372 (372)
Q Consensus       367 ~Ivd~d  372 (372)
                      +|+|++
T Consensus       390 ~i~~~~  395 (560)
T PRK08974        390 KLVDDD  395 (560)
T ss_pred             EEECCC
Confidence            999864

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-40  Score=320.51  Aligned_cols=335  Identities=21%  Similarity=0.305  Sum_probs=259.4

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.+.++++++||++|+.++++.+||.||.++++++|+.|.+                 +|+++||+|+++++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~-----------------~g~~~~~~v~v~~~n~~~   65 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIA-----------------QGLGPGDHVGIYARNRIE   65 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence            578999999999999999999999999999999999999999998                 599999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc--ccccCCCCCCC------CC
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS------SE  152 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~  152 (372)
                      ++++++|++++|++++|+++.++.+++.++++++++++++++....+.+.++.......  .+.+.......      ..
T Consensus        66 ~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (533)
T PRK07798         66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDY  145 (533)
T ss_pred             HHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccH
Confidence            99999999999999999999999999999999999999999987776666654332211  11111111000      00


Q ss_pred             cccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---------cc------CCCCeEEEe
Q 017382          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---------EY------TSADQFLHC  217 (372)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---------~~------~~~d~~l~~  217 (372)
                      ..................+.++|+|||||||.||+|+++|+++..........+         .+      ..+++++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        146 EDALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHHHhccCCcCCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            000000001111111234567999999999999999999999876554432211         11      567899999


Q ss_pred             cCchhHHHHHHHHHHHHHcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHH-HHHhhhhccHHH
Q 017382          218 LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR-LIQGYEAMDTEL  294 (372)
Q Consensus       218 ~pl~~~~~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~-l~~~~~~~~~~~  294 (372)
                      .|++|..+++ .++.+++.|+++++.+  .+++..+++.          ++++++|.+.++|..+.. +.+.+.      
T Consensus       226 ~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~~------  288 (533)
T PRK07798        226 PPLMHGAGQW-AAFAALFSGQTVVLLPDVRFDADEVWRT----------IEREKVNVITIVGDAMARPLLDALE------  288 (533)
T ss_pred             cchhhhhhHH-HHHHHHhcCceEEEecCCCcCHHHHHHH----------HHHhCCeEEEechHHHHHHHHHHhc------
Confidence            9999999997 6888999999999999  7899999998          788999999999876643 443321      


Q ss_pred             HHhhhhhccCceEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCCCCCCCCCCccc--ccCCCceEEEeec
Q 017382          295 QAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVG--NPLPGVQVSMILL  371 (372)
Q Consensus       295 ~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG--~p~~g~~i~Ivd~  371 (372)
                       .....+++++|.+++||+++++++.++|.+.+ +..+++.||+||++.+......  ......|  ++.++.+++|+|.
T Consensus       289 -~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~g~~~~~~~~~~~i~~~  365 (533)
T PRK07798        289 -ARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVA--KGAVHTGGPRFTIGPRTVVLDE  365 (533)
T ss_pred             -ccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCC--CCCccCCCCccCCCceEEEECC
Confidence             11234678999999999999999999999988 7899999999999755443221  1122334  7889999999986


Q ss_pred             C
Q 017382          372 L  372 (372)
Q Consensus       372 d  372 (372)
                      |
T Consensus       366 ~  366 (533)
T PRK07798        366 D  366 (533)
T ss_pred             C
Confidence            4

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1e-40  Score=387.13  Aligned_cols=325  Identities=22%  Similarity=0.274  Sum_probs=268.9

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++++||++|++++++++||+||.++++++|+.|.+.                 |+++|++|+++++|++++
T Consensus      4552 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~i~~~~s~~~ 4614 (5163)
T PRK12316       4552 CVHQLVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIAR-----------------GVGPEVLVGIAMERSAEM 4614 (5163)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            578899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|++|.++.+++.+++++++++++|++....+.+...   .......+......      ......
T Consensus      4615 iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~ 4685 (5163)
T PRK12316       4615 MVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP---DGLASLALDRDEDW------EGFPAH 4685 (5163)
T ss_pred             HHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc---cCcceEeecchhhc------ccCCcc
Confidence            999999999999999999999999999999999999999987654432110   01111111111000      000111


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||.||||+++|+++...+......++++++|++++..|++|..+.+ .++.+|..|++++
T Consensus      4686 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 4764 (5163)
T PRK12316       4686 DPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHE-GLYHPLINGASVV 4764 (5163)
T ss_pred             CCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHH-HHHHHHhCCCEEE
Confidence            122344678999999999999999999999999999999998899999999999999999999986 6899999999999


Q ss_pred             EcCC--CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +.+.  +++..+++.          ++++++|+++++|++++.+.+...         ...+++++|.+++|||++++++
T Consensus      4765 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~---------~~~~~~~lr~v~~gGe~l~~~~ 4825 (5163)
T PRK12316       4765 IRDDSLWDPERLYAE----------IHEHRVTVLVFPPVYLQQLAEHAE---------RDGEPPSLRVYCFGGEAVAQAS 4825 (5163)
T ss_pred             EcCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhhhc---------cccCCCCccEEEEecccCCHHH
Confidence            9875  378888888          788999999999999999876521         1226789999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccCCC--C---CCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETIT-GHRLLERYGMTEFVMAISNPL--R---GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~---~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+.|.+.+ +.+++|.||+||+++.++...  .   ......++|+|++|++++|+|.+
T Consensus      4826 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~ 4884 (5163)
T PRK12316       4826 YDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQ 4884 (5163)
T ss_pred             HHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEECCC
Confidence            98888776 789999999999987654221  1   12345789999999999999853

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.7e-40  Score=382.80  Aligned_cols=326  Identities=18%  Similarity=0.262  Sum_probs=269.6

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.+++.++||++|+++.+..+||+||.++++++|+.|.+                 +|+++|++|+|++++++++
T Consensus      3721 ~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~-----------------~gv~~~~~V~v~~~~s~~~ 3783 (4334)
T PRK05691       3721 SYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRA-----------------AGVGVDQPVALLAERGLDL 3783 (4334)
T ss_pred             CHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            57899999999999999999999999999999999999999998                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC---cccccCCCCCCCCCcccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA---KFSLIPPVPNVSSETTVFDQ  158 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  158 (372)
                      +++++|++++|++++|++|.++.+++.+++++++++++++++...+...........   ....+..  .    ......
T Consensus      3784 ~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~ 3857 (4334)
T PRK05691       3784 LGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE--E----VQAGEV 3857 (4334)
T ss_pred             HHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec--c----cccccc
Confidence            999999999999999999999999999999999999999998765544333222111   0011100  0    000000


Q ss_pred             cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       159 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                      ..........+++.|||+|||||||+||||+++|+++.+.+......+++++.|+++...|++|..+++ .++.++..|+
T Consensus      3858 ~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~-~~~~~l~~G~ 3936 (4334)
T PRK05691       3858 ASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW-QFLAAPLFGA 3936 (4334)
T ss_pred             cccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH-HHHHHHhCCC
Confidence            111122334678999999999999999999999999999999988899999999999999999999996 6899999999


Q ss_pred             eEEEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCC
Q 017382          239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (372)
Q Consensus       239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~  315 (372)
                      ++++.+.   .++..+++.          ++++++|++.++|+++..++...           ...+++||.+++|||++
T Consensus      3937 ~l~i~~~~~~~~~~~l~~~----------~~~~~vt~~~~~Ps~~~~l~~~~-----------~~~~~~lr~~~~gGe~l 3995 (4334)
T PRK05691       3937 RVEIVPNAIAHDPQGLLAH----------VQAQGITVLESVPSLIQGMLAED-----------RQALDGLRWMLPTGEAM 3995 (4334)
T ss_pred             EEEEcCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhhc-----------cccCCCceEEEecCCcC
Confidence            9999875   467788887          78899999999999999887531           22568899999999999


Q ss_pred             CHHHHHHHHHHh-CCccccccccccccccccCC----CCCCCCCCcccccCCCceEEEeecC
Q 017382          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNP----LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       316 ~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~----~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++.+.|.+.+ +.+++|.||+||++..++..    ........++|+|++|++++|+|.+
T Consensus      3996 ~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~ 4057 (4334)
T PRK05691       3996 PPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEA 4057 (4334)
T ss_pred             CHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCC
Confidence            999999998876 78999999999998755421    1112234579999999999999853

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-40  Score=320.95  Aligned_cols=333  Identities=19%  Similarity=0.235  Sum_probs=261.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +++.+.|.++++.+|+++|++.+++.+||+||.+++.++|+.|.+                 .|+++||+|+++++|+++
T Consensus        10 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~n~~~   72 (540)
T PRK06164         10 DTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAA-----------------QGVRRGDRVAVWLPNCIE   72 (540)
T ss_pred             CCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCcHH
Confidence            478899999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhc--C-CcccccC-CCCCCCC
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS--G-AKFSLIP-PVPNVSS  151 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~--~-~~~~~~~-~~~~~~~  151 (372)
                      ++++++||+++|++++|+++..+.+++.++++++++++++++++..     +.+.......  . ..+..+. .......
T Consensus        73 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (540)
T PRK06164         73 WVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPA  152 (540)
T ss_pred             HHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCC
Confidence            9999999999999999999999999999999999999999987542     2222221110  0 1111111 0000000


Q ss_pred             Cccc-----cc-c--cc--cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCch
Q 017382          152 ETTV-----FD-Q--SQ--AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (372)
Q Consensus       152 ~~~~-----~~-~--~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  221 (372)
                      ....     .. .  ..  ........++++++++|||||||.||+|++||+++...+......+++.+++++++.+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~  232 (540)
T PRK06164        153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFC  232 (540)
T ss_pred             CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCch
Confidence            0000     00 0  00  0001223468899999999999999999999999999998888888999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhh
Q 017382          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (372)
Q Consensus       222 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  301 (372)
                      |.+|+. .++.++..|+++++.+.+++..+++.          ++++++|+++++|+++..+.+.         .....+
T Consensus       233 ~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~l~~l~~~---------~~~~~~  292 (540)
T PRK06164        233 GVFGFS-TLLGALAGGAPLVCEPVFDAARTARA----------LRRHRVTHTFGNDEMLRRILDT---------AGERAD  292 (540)
T ss_pred             hHHHHH-HHHHHHhcCceEEecCCCCHHHHHHH----------HHHhCCeeecCCHHHHHHHHHh---------hcccCC
Confidence            999996 68999999999999999999999888          7889999999999999999875         123457


Q ss_pred             ccCceEEEecC-CCCCHHHHHHHHHHhCCccccccccccccccccCCCCC---CCCCCcccccC-CCceEEEeec
Q 017382          302 AKQLRLMMCGS-SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG---ARKAGTVGNPL-PGVQVSMILL  371 (372)
Q Consensus       302 l~~lr~v~~gG-~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~---~~~~~svG~p~-~g~~i~Ivd~  371 (372)
                      +++++.+..+| .+...+..+.+.+. |+++++.||+||++.+.+.....   ..+..++|.|+ ++++++|+|.
T Consensus       293 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~  366 (540)
T PRK06164        293 FPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDP  366 (540)
T ss_pred             CcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecC
Confidence            78899887776 45555666666554 89999999999998665432221   23345678886 8999999985

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.9e-40  Score=337.62  Aligned_cols=322  Identities=14%  Similarity=0.185  Sum_probs=252.1

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.|.++++++||++|++++++.+||+||.++++++|+.|++                 +|+++||+|+|+++|+++
T Consensus       447 ~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~-----------------~Gv~~Gd~VaI~~~n~~e  509 (994)
T PRK07868        447 ISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIA-----------------VGVRQGDRVGVLMETRPS  509 (994)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence            578899999999999999999999999999999999999999999                 599999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCC----CC---CCc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN----VS---SET  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~  153 (372)
                      ++++++||+++|++++|++|.   +++.++++.++++++|++++..+.+...    ...++.+.....    ..   ...
T Consensus       510 ~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~----~~~iiv~~~~~~~~~~~~~~~~~~  582 (994)
T PRK07868        510 ALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL----PGRVLVLGGGESRDLDLPDDADVI  582 (994)
T ss_pred             HHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc----CceEEEecCCccccccCCcchhhh
Confidence            999999999999999999985   6799999999999999997766544322    122222211000    00   000


Q ss_pred             cccccccc----c---cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHH
Q 017382          154 TVFDQSQA----E---KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL  226 (372)
Q Consensus       154 ~~~~~~~~----~---~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~  226 (372)
                      ...+....    .   ......++++++|+|| ||||+||++.++|.++..........+.+.++|++++.+|++|..++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl  661 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGL  661 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHH
Confidence            00000000    0   0011235899999998 58888888888888776655555566788899999999999999999


Q ss_pred             HHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCce
Q 017382          227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR  306 (372)
Q Consensus       227 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr  306 (372)
                      ...++.++..|+++++.+.++++.+++.          ++++++|++.++|+++..+++..        .....+++++|
T Consensus       662 ~~~l~~~l~gG~~vvl~~~~~~~~~~~~----------I~~~~vT~~~~~Ps~l~~L~~~~--------~~~~~~~~slr  723 (994)
T PRK07868        662 LVSLGGAVVGGSRIALSRGLDPDRFVQE----------VRQYGVTVVSYTWAMLREVVDDP--------AFVLHGNHPVR  723 (994)
T ss_pred             HHHHHHHhccceEEEecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCc--------CCccCCCCceE
Confidence            7666677778888888888999999999          88999999999999999998741        11223567899


Q ss_pred             EEEecCCCCCHHHHHHHHHHhC-CccccccccccccccccCCCCCCCCCCcccccCCCc-eEEEe
Q 017382          307 LMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV-QVSMI  369 (372)
Q Consensus       307 ~v~~gG~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~-~i~Iv  369 (372)
                      .++  |+.+++++++.|.+.|+ .+++|.||+||++.+.+..  ...+.+++|+|+||+ +++|+
T Consensus       724 ~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~~~~~~svG~p~pg~~~v~i~  784 (994)
T PRK07868        724 LFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--SGAKIGSKGRPLPGAGRVELA  784 (994)
T ss_pred             EEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--CCCCCcccCCccCCCCceeEE
Confidence            876  34599999999999986 7999999999987654432  234678999999998 78775

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-39  Score=315.39  Aligned_cols=327  Identities=18%  Similarity=0.187  Sum_probs=247.1

Q ss_pred             HHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHH
Q 017382            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (372)
Q Consensus         8 ~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~   85 (372)
                      ..+++.+|+++|+++  +++.+||+||.++++++|+.|.+                 .|+++||+|+++++|++++++++
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-----------------~gv~~gd~V~i~~~n~~~~~~~~   66 (501)
T PRK13390          4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-----------------AGLRTGDVVALLSDNSPEALVVL   66 (501)
T ss_pred             chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHHHHHH
Confidence            457788999999986  36899999999999999999999                 49999999999999999999999


Q ss_pred             HHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccccccc
Q 017382           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD  165 (372)
Q Consensus        86 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (372)
                      +|++++|++++|+++.++++++.+++++++++.+++++................ ..+...  .................
T Consensus        67 la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~  143 (501)
T PRK13390         67 WAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLR-LSFGGE--IDGFGSFEAALAGAGPR  143 (501)
T ss_pred             HHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceE-EEecCc--ccccccHHHHhcccCCC
Confidence            999999999999999999999999999999999999875543333222111110 111100  00000000000000011


Q ss_pred             CCCCCCcEEEEecCCCCCCCceeee--ehhhHHHHHH----HHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCce
Q 017382          166 GQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQVQ----MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (372)
Q Consensus       166 ~~~~~~~a~i~~TSGtTG~pK~v~~--s~~~l~~~~~----~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  239 (372)
                      .....+.++|+|||||||.||+|++  +|.++.....    .....+.+..+|+++..+|++|..++... +..+..|++
T Consensus       144 ~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~  222 (501)
T PRK13390        144 LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWC-SMVHALGGT  222 (501)
T ss_pred             CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHH-HHHHhcCce
Confidence            1122357999999999999999996  4555543221    12335678889999999999999987543 345678999


Q ss_pred             EEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +++.+.+++..+++.          ++++++|++.++|+++..+.+....      .....+++++|.++.||+++++++
T Consensus       223 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~~g~~~~~~~  286 (501)
T PRK13390        223 VVLAKRFDAQATLGH----------VERYRITVTQMVPTMFVRLLKLDAD------VRTRYDVSSLRAVIHAAAPCPVDV  286 (501)
T ss_pred             EEEcCCcCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhccch------hcccCChhhhheEEEcCCCCCHHH
Confidence            999999999999998          7889999999999999988764211      112345789999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccCCC-CCCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+.+.+.+|.++++.||+||+++++.... ......+++|+|++| +++|+|.+
T Consensus       287 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~  339 (501)
T PRK13390        287 KHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDD  339 (501)
T ss_pred             HHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCC
Confidence            99999988999999999999976544222 223456899999999 79999854

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.5e-40  Score=378.51  Aligned_cols=323  Identities=22%  Similarity=0.311  Sum_probs=268.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++.+|+++|++++++++||+||.+++.++|+.|++.                 |+++|++|++++++++++
T Consensus      1132 ~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~i~~~~s~~~ 1194 (4334)
T PRK05691       1132 WLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDK-----------------GVGPDVCVAIAAERSPQL 1194 (4334)
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            478899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++|++++|++++|++|.++.+++.+++++++++++|++......+....   ......+....       .......
T Consensus      1195 iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~ 1264 (4334)
T PRK05691       1195 LVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE---GVSAIALDSLH-------LDSWPSQ 1264 (4334)
T ss_pred             HHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc---CceEEeecccc-------ccccCCC
Confidence            9999999999999999999999999999999999999999986544332210   00111111000       0000001


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++++|||||||.||||+++|+++...+......++++++|++++..|++|..+++ .++.+|+.|++++
T Consensus      1265 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~ 1343 (4334)
T PRK05691       1265 APGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVW-ECFWPLITGCRLV 1343 (4334)
T ss_pred             CCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHhCCCEEE
Confidence            111234578999999999999999999999999999999888889999999999999999999986 6889999999999


Q ss_pred             EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.+.   .++..+++.          ++++++|++.++|++++.+.+...          ...++++|.+++||++++++
T Consensus      1344 i~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~~----------~~~~~~lr~~~~gGe~l~~~ 1403 (4334)
T PRK05691       1344 LAGPGEHRDPQRIAEL----------VQQYGVTTLHFVPPLLQLFIDEPL----------AAACTSLRRLFSGGEALPAE 1403 (4334)
T ss_pred             EcCccccCCHHHHHHH----------HHHcCCeEEECcHHHHHHHHhCcc----------cccCCcccEEEEeecCCCHH
Confidence            9863   678888888          788999999999999999876411          23578999999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccCC--CCCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETIT-GHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~--~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.|.+.+ +.+++|.||+||+++.++..  ........++|+|++|++++|+|.+
T Consensus      1404 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~ 1460 (4334)
T PRK05691       1404 LRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAE 1460 (4334)
T ss_pred             HHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCC
Confidence            999999887 68999999999998665421  1223456789999999999999864

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-39  Score=304.92  Aligned_cols=276  Identities=20%  Similarity=0.259  Sum_probs=239.3

Q ss_pred             EEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeC
Q 017382           19 AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL   98 (372)
Q Consensus        19 al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l   98 (372)
                      +++++++++||.||.++++++|+.|..                  |+++|++|+++++|+++++++++|++++|++++|+
T Consensus         1 ~~~~~~~~~ty~el~~~~~~~a~~l~~------------------~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l   62 (414)
T PRK08308          1 MLIVNDEEYSKSDFDLRLQRYEEMEQF------------------QEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPI   62 (414)
T ss_pred             CeEecCceecHHHHHHHHHHHHHHHHc------------------CCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEec
Confidence            467889999999999999999999854                  88999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccccccccCCCCCCcEEEEec
Q 017382           99 ALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT  178 (372)
Q Consensus        99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  178 (372)
                      ++..+.+++..++++++++++++++....               ..   .               .....++++++++||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~~---~---------------~~~~~~~~~~~i~~T  109 (414)
T PRK08308         63 HPDTPKEAAIRMAKRAGCHGLLYGESDFT---------------KL---E---------------AVNYLAEEPSLLQYS  109 (414)
T ss_pred             CCCCCHHHHHHHHHhCCCCEEEecCcccc---------------cc---c---------------CCCCCCCCceEEEEC
Confidence            99999999999999999999999763100               00   0               011346789999999


Q ss_pred             CCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhh
Q 017382          179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES  258 (372)
Q Consensus       179 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~  258 (372)
                      |||||.||+|++||+++..++......+....+|+++..+|++|.+++...++.++..|+++++.+.+++..+++.    
T Consensus       110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----  185 (414)
T PRK08308        110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI----  185 (414)
T ss_pred             CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH----
Confidence            9999999999999999999888888888888999999999999999987788999999999999999999999988    


Q ss_pred             CCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccc
Q 017382          259 YPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT  338 (372)
Q Consensus       259 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~t  338 (372)
                            ++++++|.+.++|+++..+.+...            ...+++.++++|+++++++.+.|++. +.++++.||+|
T Consensus       186 ------l~~~~~t~~~~~P~~~~~l~~~~~------------~~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~t  246 (414)
T PRK08308        186 ------LRNTPQHILYAVPLMLHILGRLLP------------GTFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCS  246 (414)
T ss_pred             ------HHHhCCeEEEcCHHHHHHHHhcCC------------ccccccEEEEccCCCCHHHHHHHHHh-CChhhhccCcc
Confidence                  788999999999999999876421            11368889999999999999999887 67899999999


Q ss_pred             cccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       339 E~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      |++.+.....  ....+++|+|+|++++++.+
T Consensus       247 E~~~~~~~~~--~~~~~~~G~p~~~~~~~~~~  276 (414)
T PRK08308        247 EAGCVSICPD--MKSHLDLGNPLPHVSVSAGS  276 (414)
T ss_pred             ccCCeeecCC--CCCCCccCccCCCeEEEEec
Confidence            9985444222  24567899999999999874

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=8.7e-39  Score=314.82  Aligned_cols=335  Identities=15%  Similarity=0.237  Sum_probs=254.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|.++.+.++++.+|+++|+++++.++||+||.++++++|..|.+                 .|+++||+|+++++|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~   82 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAK-----------------RSIGPGSTVAVIAPNIPA   82 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence            467888899999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC---------CcccccCCCC----
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---------AKFSLIPPVP----  147 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~----  147 (372)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++++..+...+......         ...+.+....    
T Consensus        83 ~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (567)
T PLN02479         83 MYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPK  162 (567)
T ss_pred             HHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcc
Confidence            999999999999999999999999999999999999999999877665544332211         0111111100    


Q ss_pred             CCC-----CCccc---ccccccc--cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEe
Q 017382          148 NVS-----SETTV---FDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC  217 (372)
Q Consensus       148 ~~~-----~~~~~---~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~  217 (372)
                      ...     .....   .......  .......++.++++|||||||.||+|++||+++..........+.++.++++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  242 (567)
T PLN02479        163 SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWT  242 (567)
T ss_pred             ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEe
Confidence            000     00000   0000000  0012233467889999999999999999999987766666667788899999999


Q ss_pred             cCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHh
Q 017382          218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (372)
Q Consensus       218 ~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  297 (372)
                      +|++|..++...+...+..|.+++ .+.+++..+++.          ++++++|++.++|+++..+.+....       .
T Consensus       243 ~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~-------~  304 (567)
T PLN02479        243 LPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSA----------IANYGVTHFCAAPVVLNTIVNAPKS-------E  304 (567)
T ss_pred             cchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhhhhh-------c
Confidence            999999988654445566666554 467899999988          8889999999999999998765211       1


Q ss_pred             hhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCC---CC-------C-CCCCCcccccCCCce-
Q 017382          298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP---LR-------G-ARKAGTVGNPLPGVQ-  365 (372)
Q Consensus       298 ~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~-------~-~~~~~svG~p~~g~~-  365 (372)
                      ...++++++.++++|+++++.+.+.|++. +.++++.||+||+++.++..   ..       . .....++|.|.+|++ 
T Consensus       305 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~  383 (567)
T PLN02479        305 TILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEG  383 (567)
T ss_pred             ccccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCc
Confidence            11256889999999999999999999876 89999999999986433211   00       0 111246788999886 


Q ss_pred             EEEeec
Q 017382          366 VSMILL  371 (372)
Q Consensus       366 i~Ivd~  371 (372)
                      ++|+|.
T Consensus       384 ~~i~d~  389 (567)
T PLN02479        384 LDVVDT  389 (567)
T ss_pred             eeEEcC
Confidence            888873

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-39  Score=294.81  Aligned_cols=350  Identities=21%  Similarity=0.277  Sum_probs=267.9

Q ss_pred             HHHHHHHHhCCcCCCceEEEe-----------------------CCceeeHHHHHHHHHHHHHHHhhCCCCccccccccc
Q 017382            2 EVFKAAYKKGSMARDSVAIRA-----------------------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE   58 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~-----------------------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~   58 (372)
                      |+++.+....++++++.++-.                       +.+++||.|+.+++..+++.|.+             
T Consensus        42 Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~-------------  108 (678)
T KOG1180|consen   42 TLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVK-------------  108 (678)
T ss_pred             cHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHH-------------
Confidence            577788888888888887742                       23689999999999999999999             


Q ss_pred             ccccccCCCCCE-EEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC
Q 017382           59 NSAVLAGGCGAR-IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG  137 (372)
Q Consensus        59 ~~~~~gv~~gd~-V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~  137 (372)
                          +|.++++. ++++++-+.+|+.+.+||++-+..+|.++.++.++.+.|-|.+++++.+||+.+..+.+.....+..
T Consensus       109 ----lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~  184 (678)
T KOG1180|consen  109 ----LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK  184 (678)
T ss_pred             ----hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC
Confidence                59998777 9999999999999999999999999999999999999999999999999999998887776655544


Q ss_pred             Cccc--ccCCCC--CCCCCcc-----------ccc--cccc---ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHH
Q 017382          138 AKFS--LIPPVP--NVSSETT-----------VFD--QSQA---EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA  197 (372)
Q Consensus       138 ~~~~--~~~~~~--~~~~~~~-----------~~~--~~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~  197 (372)
                      ....  ..+..+  ...+...           +.+  ....   .++.+..++|+|+|||||||||.||||+++|+|+++
T Consensus       185 ~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA  264 (678)
T KOG1180|consen  185 TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVA  264 (678)
T ss_pred             ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHh
Confidence            2222  222111  1000000           000  0000   123344789999999999999999999999999999


Q ss_pred             HHHHHHhhc-ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecc
Q 017382          198 QVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGV  276 (372)
Q Consensus       198 ~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  276 (372)
                      .+....... .+.+.|+++.++||.|++.+..++. +++-|+++=..+....-+--..+.+.+  .+-+...+||++.++
T Consensus       265 ~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~-~ft~G~~iGY~S~~TLtdts~ki~kg~--kGD~~~lkPTiM~~V  341 (678)
T KOG1180|consen  265 GVTGVGENVPELGPKDRYIAYLPLAHILELTAELV-CFTWGGRIGYSSPLTLTDTSSKIKKGC--KGDLTELKPTIMAAV  341 (678)
T ss_pred             hhhhhcccCcccCCCceEEEechHHHHHHHHHHHH-HHhhCCEeecCCcceecccchhhccCC--cCccccccchhhhhh
Confidence            888876655 6889999999999999999987655 599999988776422111111111111  111667899999999


Q ss_pred             hHHHHHHHHhhh----hcc------------------------------HHHHHhhhhhccCceEEEecCCCCCHHHHHH
Q 017382          277 PTMYTRLIQGYE----AMD------------------------------TELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (372)
Q Consensus       277 p~~~~~l~~~~~----~~~------------------------------~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~  322 (372)
                      |..|.++-+...    ..+                              .-+.........+||++++||+|+++++.+.
T Consensus       342 pAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF  421 (678)
T KOG1180|consen  342 PAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRF  421 (678)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHH
Confidence            999998765311    000                              1111334445789999999999999999999


Q ss_pred             HHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          323 WETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       323 ~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +.-.+.+++.++||.||+++..+-....+...+.+|.|++.+++|++|-
T Consensus       422 ~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw  470 (678)
T KOG1180|consen  422 MNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDW  470 (678)
T ss_pred             HHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEh
Confidence            9988899999999999998777655555677889999999999999984

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-39  Score=316.25  Aligned_cols=333  Identities=17%  Similarity=0.253  Sum_probs=254.5

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCC---ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~---~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      +++.+.+...++.+|+.+++..++   +.+||.||.+++.++|+.|.+                 .|+++||+|+++++|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~gi~~gd~V~l~~~n   83 (579)
T PRK09192         21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLA-----------------LGLKPGDRVALIAET   83 (579)
T ss_pred             hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCC
Confidence            367889999999888777654332   679999999999999999998                 499999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCC-------HHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCC
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS  150 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (372)
                      +++++++++||+++|++++|+++..+       .+++.++++.++++++++++...+.+.+....... . .+.......
T Consensus        84 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~  161 (579)
T PRK09192         84 DGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL-L-HVLSHAWFK  161 (579)
T ss_pred             chhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc-c-ceeehhhhc
Confidence            99999999999999999999976443       68899999999999999998776665554321111 0 110000000


Q ss_pred             CCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh-hcccCCCCeEEEecCchhHHHHHHH
Q 017382          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFLHCLPLHHVHGLFNA  229 (372)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~~~~~~  229 (372)
                         .. . ..........++++++|+|||||||.||+|.++|+++..++..... .+++..+|+++.++|++|..+++..
T Consensus       162 ---~~-~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~  236 (579)
T PRK09192        162 ---AL-P-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGF  236 (579)
T ss_pred             ---cc-C-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHH
Confidence               00 0 0011122345689999999999999999999999999998887777 7889999999999999999999877


Q ss_pred             HHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCc
Q 017382          230 LLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL  305 (372)
Q Consensus       230 ~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~l  305 (372)
                      ++.++..|+++++.+.    .++..+++.          +.++++++++..|.++..+......     ......+++++
T Consensus       237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~l  301 (579)
T PRK09192        237 LLTPVATQLSVDYLPTRDFARRPLQWLDL----------ISRNRGTISYSPPFGYELCARRVNS-----KDLAELDLSCW  301 (579)
T ss_pred             HHHHHHhCCeeEeeCHHHHHHCHHHHHHH----------HHhcCcEEEeCCcHHHHHHHHhhcc-----ccccccchhhh
Confidence            7888999999977763    256777777          7888999877766555555432111     11233567899


Q ss_pred             eEEEecCCCCCHHHHHHHHHHhC------CccccccccccccccccCCCCCC----------------------------
Q 017382          306 RLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRGA----------------------------  351 (372)
Q Consensus       306 r~v~~gG~~~~~~~~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~~----------------------------  351 (372)
                      |.+++||+++++.+.+.|.+.++      ..+++.||+||+++.++......                            
T Consensus       302 r~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (579)
T PRK09192        302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRV  381 (579)
T ss_pred             heeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccc
Confidence            99999999999999999988873      35899999999976544221110                            


Q ss_pred             CCCCcccccCCCceEEEeecC
Q 017382          352 RKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       352 ~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ...+++|+|+||++++|+|.|
T Consensus       382 ~~~~~vG~~~p~~~v~i~d~~  402 (579)
T PRK09192        382 RTFVNCGKALPGHEIEIRNEA  402 (579)
T ss_pred             eeEeecCCcCCCcEEEEECCC
Confidence            113579999999999999864

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=6.7e-39  Score=307.82  Aligned_cols=302  Identities=24%  Similarity=0.310  Sum_probs=247.3

Q ss_pred             CHHHHHHH-HhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            1 MEVFKAAY-KKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         1 m~~~~~l~-~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      |++.+.+. +.++++|+++|++++++.+||.||.++++++|..|.+.                 |+++||+|+++++|++
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------g~~~~~~v~l~~~~~~   64 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQ-----------------GVVEGSGVALRGKNSP   64 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEecCCCH
Confidence            45555553 44788999999999999999999999999999999994                 9999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (372)
                      +++++++||+++|++++|+++..+++++.++++++++++++++++... +...    .  .....        .     .
T Consensus        65 ~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~----~--~~~~~--------~-----~  124 (458)
T PRK09029         65 ETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL----T--SLHLQ--------L-----V  124 (458)
T ss_pred             HHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc----c--ccccc--------c-----c
Confidence            999999999999999999999999999999999999999999875422 1110    0  00000        0     0


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCce
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  239 (372)
                      .........++++++++|||||||.||+|.+||+++...+......+++..+|+++..+|++|.+++. .++.++..|++
T Consensus       125 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~  203 (458)
T PRK09029        125 EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGAT  203 (458)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhH-HHHHHHhCCce
Confidence            00111234578999999999999999999999999999988888888999999999999999999985 46778999999


Q ss_pred             EEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +++.+.   ..+++.          +  .++|.+..+|+++..+.....            ...++|.+++||+++++.+
T Consensus       204 v~~~~~---~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~------------~~~~l~~i~~gG~~~~~~~  256 (458)
T PRK09029        204 LVVRDK---QPLEQA----------L--AGCTHASLVPTQLWRLLDNRS------------EPLSLKAVLLGGAAIPVEL  256 (458)
T ss_pred             EEeCCh---HHHHHH----------H--hhceeeecChHHHHHHHhccc------------cCCcceEEEECCCCCCHHH
Confidence            999775   344554          3  378999999999998876421            1347999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      .+.+.+. |.++++.||+||++...+....  ....++|+|+++++++|+|
T Consensus       257 ~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~  304 (458)
T PRK09029        257 TEQAEQQ-GIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD  304 (458)
T ss_pred             HHHHHHc-CCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC
Confidence            9998764 9999999999999865543322  2345699999999999986

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-39  Score=316.96  Aligned_cols=302  Identities=18%  Similarity=0.263  Sum_probs=233.1

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC---------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V   71 (372)
                      |++.+.|.+++..+|+++|+++.         .+++||.||.+++.++|+.|.+.                 | ++||+|
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~-----------------g-~~gd~V   62 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH-----------------G-STGDRA   62 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHh-----------------C-CCCCEE
Confidence            78999999999999999999853         27899999999999999999984                 7 689999


Q ss_pred             EEEcCCCHhHHHHHHHHHhhCceeeeCCC---CCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC----CcccccC
Q 017382           72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP  144 (372)
Q Consensus        72 ~l~~~n~~~~~~~~~A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~  144 (372)
                      +++++|+++++++++||+++|++++|+++   ..+.+++.++++++++++++++++..+.+........    ..+..+.
T Consensus        63 ~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (578)
T PRK05850         63 VILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD  142 (578)
T ss_pred             EEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec
Confidence            99999999999999999999999999997   4578899999999999999999877666554321110    0011111


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc-c-----cCCCCeEEEec
Q 017382          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-E-----YTSADQFLHCL  218 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~d~~l~~~  218 (372)
                      ...       ... ..........++++++|+|||||||.||||+++|+++..++......+ .     ...++++++++
T Consensus       143 ~~~-------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  214 (578)
T PRK05850        143 LLD-------LDS-PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWL  214 (578)
T ss_pred             ccc-------ccc-CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEEC
Confidence            000       000 000112234568999999999999999999999999988776654432 2     34678999999


Q ss_pred             CchhHHHHHHHHHHHHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHH-HHHHHhhhhccHH
Q 017382          219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-TRLIQGYEAMDTE  293 (372)
Q Consensus       219 pl~~~~~~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~-~~l~~~~~~~~~~  293 (372)
                      |++|..|++..++.+++.|+++++.+..    ++..+++.          +.+++++++ .+|.++ ..+......    
T Consensus       215 pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~----------i~~~~~~~~-~~p~~~~~~~~~~~~~----  279 (578)
T PRK05850        215 PFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQL----------LASNPHAFS-AAPNFAFELAVRKTSD----  279 (578)
T ss_pred             CCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHH----------HHHcCCeEE-eCCcHHHHHHHHhcch----
Confidence            9999999887789999999999998753    57777777          778898865 455554 333332110    


Q ss_pred             HHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC------Cccccccccccccccc
Q 017382          294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAI  344 (372)
Q Consensus       294 ~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~------~~l~~~YG~tE~~~~~  344 (372)
                       ......+++++|.+++||+++++++.++|.+.|+      ..+++.||+||++..+
T Consensus       280 -~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  335 (578)
T PRK05850        280 -DDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYV  335 (578)
T ss_pred             -hhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhhe
Confidence             1223346789999999999999999999998873      3689999999987544

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-39  Score=311.05  Aligned_cols=330  Identities=18%  Similarity=0.191  Sum_probs=256.1

Q ss_pred             HHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHH
Q 017382            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (372)
Q Consensus         8 ~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~   85 (372)
                      ..+++.+||++|+++  +++.+||.||.++++++|+.|.+.                 |+++|++|+++++|++++++++
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~-----------------g~~~~~~V~v~~~~~~~~~~~~   66 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSL-----------------GLKRGDHVAIFMENNLRYLEVC   66 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHHHHHH
Confidence            367788999999987  578899999999999999999994                 9999999999999999999999


Q ss_pred             HHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc--ccccCCCCCCCCCcccccccc-cc
Q 017382           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQ-AE  162 (372)
Q Consensus        86 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~  162 (372)
                      +||+++|++++|+++..+.+++.++++.++++.++++......+.+........  .+.+.............+... ..
T Consensus        67 ~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (511)
T PRK13391         67 WAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLP  146 (511)
T ss_pred             HHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCC
Confidence            999999999999999999999999999999999999987766655554332211  111111000000000000000 00


Q ss_pred             cccCCCCCCcEEEEecCCCCCCCceeee--ehhhHHH---HHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcC
Q 017382          163 KMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (372)
Q Consensus       163 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G  237 (372)
                      .......++.++++|||||||.||+|.+  +|.++..   ........+.+.+++++++..|++|..++. ..+.++..|
T Consensus       147 ~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g  225 (511)
T PRK13391        147 ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLG  225 (511)
T ss_pred             CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcC
Confidence            1111233467899999999999999995  4665432   233345566788899999999999998886 467789999


Q ss_pred             ceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      +++++.+.+++..+++.          ++++++|++.++|+++..+.+....      ...+.+++++|.+++||+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~~~~gg~~~~~  289 (511)
T PRK13391        226 GTVIVMEHFDAEQYLAL----------IEEYGVTHTQLVPTMFSRMLKLPEE------VRDKYDLSSLEVAIHAAAPCPP  289 (511)
T ss_pred             ceEEECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCchh------hcccCCccceeEEEEccCCCCH
Confidence            99999999999999998          7889999999999999988764211      1223467899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.+.+.+.+|..+++.||+||++.++..... ....++++|+|++| +++|+|.+
T Consensus       290 ~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~  344 (511)
T PRK13391        290 QVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDD  344 (511)
T ss_pred             HHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCC
Confidence            99999999889999999999999866543222 23556899999999 68998853

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-38  Score=308.97  Aligned_cols=320  Identities=24%  Similarity=0.311  Sum_probs=249.0

Q ss_pred             eEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeee
Q 017382           18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP   97 (372)
Q Consensus        18 ~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~   97 (372)
                      .|++.+++.+||.||.++++++|+.|.+                 +|+++||+|+++++|+++++++++|++++|+++++
T Consensus         3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~-----------------~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~   65 (509)
T PRK12406          3 ATIISGDRRRSFDELAQRAARAAGGLAA-----------------LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP   65 (509)
T ss_pred             eEEEECCeeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            4677888999999999999999999999                 49999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCC------C--------Cccccccc-ccc
Q 017382           98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS------S--------ETTVFDQS-QAE  162 (372)
Q Consensus        98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------~~~~~~~~-~~~  162 (372)
                      +++..+.+++.++++.+++++++++....+.+.+.... ....+.........      .        .....+.. ...
T Consensus        66 l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (509)
T PRK12406         66 VNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPA-GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE  144 (509)
T ss_pred             cCcccCHHHHHHHHhccCCcEEEEccchhhhhhhhhhc-ccceeecccccccccccccccccccCCCCccCHHHHhcccC
Confidence            99999999999999999999999988766554332211 01111111000000      0        00000000 001


Q ss_pred             cccCCCCCCcEEEEecCCCCCCCceeeeehhhH---HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCce
Q 017382          163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI---DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (372)
Q Consensus       163 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  239 (372)
                      ......++++++++|||||||.||+|.++|...   ..........+++..++++++..|++|..+... .+.++..|++
T Consensus       145 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~  223 (509)
T PRK12406        145 PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGV  223 (509)
T ss_pred             ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheE
Confidence            112235689999999999999999999876553   343444556678889999999999999988764 4456889999


Q ss_pred             EEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +++.+.+++..+++.          ++++++|++.++|+++..+++....      .....+++++|.++.||+++++++
T Consensus       224 ~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~~~~~~~  287 (509)
T PRK12406        224 LVLQPRFDPEELLQL----------IERHRITHMHMVPTMFIRLLKLPEE------VRAKYDVSSLRHVIHAAAPCPADV  287 (509)
T ss_pred             EEEccCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCchh------hcccCCCCceeEEEEcCCCCCHHH
Confidence            999998999999988          7889999999999999988764211      122346789999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+.+.+.++..+++.||+||++.+++.... ...+++++|+|+++++++|+|++
T Consensus       288 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  341 (509)
T PRK12406        288 KRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDED  341 (509)
T ss_pred             HHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCC
Confidence            999999899999999999999876553322 23466899999999999999864

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.2e-38  Score=306.38  Aligned_cols=334  Identities=18%  Similarity=0.223  Sum_probs=253.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      |+.++.|.+.++.+|+++|+..++..+||+||.++++++|..|.+                 .|+++||+|+++++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~v~i~~~~~~~   80 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALAR-----------------RGIGRGDTVAVLLPNIPA   80 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCchH
Confidence            567889999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc-ccccCCCCC-CC--------
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPN-VS--------  150 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--------  150 (372)
                      ++++++|++++|++++|+++..+.+++.++++.++++.++++.+..+.+.+........ ...+..... ..        
T Consensus        81 ~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (545)
T PRK08162         81 MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL  160 (545)
T ss_pred             HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccc
Confidence            99999999999999999999999999999999999999999998777666544332211 111111100 00        


Q ss_pred             CCcccccccccc--cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH
Q 017382          151 SETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (372)
Q Consensus       151 ~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~  228 (372)
                      ............  .......+++++|+|||||||.||+|+++|+++..........+.+..++++++.+|++|..++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~  240 (545)
T PRK08162        161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF  240 (545)
T ss_pred             cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence            000000000000  001123457899999999999999999999998777666666677888999999999999998865


Q ss_pred             HHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEE
Q 017382          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (372)
Q Consensus       229 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v  308 (372)
                      .++. .+.|++.++.+.+++..+++.          ++++++|++.++|+++..+.+....        ....+.+.+.+
T Consensus       241 ~~~~-~~~~g~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~~~~~  301 (545)
T PRK08162        241 PWTV-AARAGTNVCLRKVDPKLIFDL----------IREHGVTHYCGAPIVLSALINAPAE--------WRAGIDHPVHA  301 (545)
T ss_pred             HHHH-HHHccEEEEeCCCCHHHHHHH----------HHHcCCeEEEechHHHHHHHhCccc--------cccCCccceEE
Confidence            4444 445666666677899999998          7889999999999999999875221        11234456677


Q ss_pred             EecCCCCCHHHHHHHHHHhCCccccccccccccccccCC-CCC----------CCCCCcccccCCC-ceEEEeec
Q 017382          309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRG----------ARKAGTVGNPLPG-VQVSMILL  371 (372)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~----------~~~~~svG~p~~g-~~i~Ivd~  371 (372)
                      +++|++++++..+.+.+. +.++++.||+||+++.+... ...          ....+++|.+++. .+++|+|+
T Consensus       302 ~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~  375 (545)
T PRK08162        302 MVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDP  375 (545)
T ss_pred             EECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcC
Confidence            899999999999998764 99999999999986433321 100          1123567777764 45788874

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=3.2e-38  Score=298.50  Aligned_cols=300  Identities=24%  Similarity=0.359  Sum_probs=242.4

Q ss_pred             eHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHH
Q 017382           28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL  107 (372)
Q Consensus        28 Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l  107 (372)
                      ||.||.+.+.++++.|.+.                .|+++||+|+++++|++++++.++||+++|++++|+++..+.+++
T Consensus         1 t~~~l~~~~~~~a~~l~~~----------------~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~   64 (408)
T TIGR01733         1 TYRELDERANRLARHLRAA----------------GGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERL   64 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHH
Confidence            7999999999999999983                389999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCce
Q 017382          108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG  187 (372)
Q Consensus       108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~  187 (372)
                      .+++++++++.+++++.....+.....    ............. ..  .............+++++++|||||||.||+
T Consensus        65 ~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~  137 (408)
T TIGR01733        65 AFILEDAGARLLLTDSALASRLAGLVL----PIILVDPLELAAL-DD--APAPPPPDAPSGPDDLAYVIYTSGSTGRPKG  137 (408)
T ss_pred             HHHHHhcCCCEEEEcCchhhhccccCC----ceEEechhhhhhc-cc--ccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence            999999999999999876554433211    1111110000000 00  0000001111356899999999999999999


Q ss_pred             eeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCch---hHHHHHHHhhCCCCCC
Q 017382          188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV---RGIWQRWRESYPVNGN  264 (372)
Q Consensus       188 v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~  264 (372)
                      |.+||+++...+......+.++.+|++++..|++|..++. .++.++..|+++++.+....   ..+...          
T Consensus       138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~----------  206 (408)
T TIGR01733       138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAAL----------  206 (408)
T ss_pred             EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------
Confidence            9999999999999988888999999999999999999986 68889999999999887543   555555          


Q ss_pred             CCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC-Ccccccccccccccc
Q 017382          265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMA  343 (372)
Q Consensus       265 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~  343 (372)
                      ++++++|.+.++|.+++.+.+...           ..++++|.+++||+++++++++.|.+.++ ..+++.||+||++.+
T Consensus       207 ~~~~~~t~l~~~p~~~~~l~~~~~-----------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~  275 (408)
T TIGR01733       207 IAEHPVTVLNLTPSLLALLAAALP-----------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVW  275 (408)
T ss_pred             HHHcCceEEEeCHHHHHHHHHhhh-----------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEE
Confidence            778899999999999999987521           46789999999999999999999999997 899999999999876


Q ss_pred             ccC---CCCCCC--CCCcccccCCCceEEEeecC
Q 017382          344 ISN---PLRGAR--KAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       344 ~~~---~~~~~~--~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +..   ......  +..++|+|+++++++|+|++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~  309 (408)
T TIGR01733       276 STATLVDADDAPRESPVPIGRPLANTRLYVLDDD  309 (408)
T ss_pred             EEEEEcCccccCCccccccCcccCCceEEEECCC
Confidence            641   111111  27789999999999999874

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-38  Score=307.19  Aligned_cols=329  Identities=21%  Similarity=0.284  Sum_probs=253.9

Q ss_pred             HHHHHHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      ++++.+..+++.+|+.+++..  .++.+||.||.++++++|+.|.+                 .|+++||+|+++++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-----------------~g~~~gd~V~l~~~~~~   65 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-----------------AGVGPGDAVAVLAGAPV   65 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCch
Confidence            577889999999999999965  44689999999999999999999                 49999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHH-------HHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCC
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESE-------LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE  152 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (372)
                      +++++++||+++|++++++++..+.++       +.++++.++++++++++........... .......+..   ..  
T Consensus        66 ~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~---l~--  139 (545)
T PRK07768         66 EIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-KGIRVLTVAD---LL--  139 (545)
T ss_pred             HHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-cCCceeehhh---hc--
Confidence            999999999999999999998877554       4556788999999998765543332211 1111111111   00  


Q ss_pred             cccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCC-CeEEEecCchhHHHHHHHHH
Q 017382          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNALL  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~~~~~~~~~~~  231 (372)
                          .... .......++++++|+|||||||.||+|+++|+++...+......+++..+ |++++++|++|..++...++
T Consensus       140 ----~~~~-~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~  214 (545)
T PRK07768        140 ----AADP-IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT  214 (545)
T ss_pred             ----ccCC-CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence                0000 01223457899999999999999999999999999988887777787776 89999999999999876677


Q ss_pred             HHHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceE
Q 017382          232 APLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (372)
                      .++..|+++++.+..    ++..+++.          +++++++++..+|.++..+.+.+....    .....+++++|.
T Consensus       215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~lr~  280 (545)
T PRK07768        215 VPMYFGAELVKVTPMDFLRDPLLWAEL----------ISKYRGTMTAAPNFAYALLARRLRRQA----KPGAFDLSSLRF  280 (545)
T ss_pred             HHHHCCceEEEeCHHHHHHhHHHHHHH----------HHHhCCEEEECchHHHHHHHHHHhccc----cccCCCchheee
Confidence            889999999887642    56666666          788999999888888777665432110    111356789999


Q ss_pred             EEecCCCCCHHHHHHHHHH---hCC---ccccccccccccccccCCCCC--------------------------CCCCC
Q 017382          308 MMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEFVMAISNPLRG--------------------------ARKAG  355 (372)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~---~~~---~l~~~YG~tE~~~~~~~~~~~--------------------------~~~~~  355 (372)
                      +++||+++++++.+.+.+.   +|.   .+++.||+||++..++.....                          ....+
T Consensus       281 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (545)
T PRK07768        281 ALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLA  360 (545)
T ss_pred             EEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEE
Confidence            9999999999999999875   555   499999999998654321110                          12446


Q ss_pred             cccccCCCceEEEeecC
Q 017382          356 TVGNPLPGVQVSMILLL  372 (372)
Q Consensus       356 svG~p~~g~~i~Ivd~d  372 (372)
                      ++|+|++|++++|+|++
T Consensus       361 ~~G~~~~g~~~~i~~~~  377 (545)
T PRK07768        361 TLGPPLPGLEVRVVDED  377 (545)
T ss_pred             eccCCCCCCEEEEECCC
Confidence            89999999999999854

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4.5e-38  Score=300.73  Aligned_cols=277  Identities=19%  Similarity=0.238  Sum_probs=222.3

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccC-CCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCC
Q 017382           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP  103 (372)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv-~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~  103 (372)
                      .-+.|+||.++++++|+.|++.                 |+ +.|++|+++++|+++++++++|++++|++++|+++.++
T Consensus        18 ~~~~~~el~~~~~~~a~~L~~~-----------------g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~   80 (452)
T PRK07445         18 IGYNSQRFYQLAQQLYLQLQQL-----------------ATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWG   80 (452)
T ss_pred             eecChHHHHHHHHHHHHHHHHh-----------------cCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCC
Confidence            3578999999999999999994                 77 56999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCC
Q 017382          104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTG  183 (372)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG  183 (372)
                      ++++.++++++++++++++++.....             ..   .    ..   .    ......++++++++|||||||
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~---~----~~---~----~~~~~~~~~~~~i~~TSGTTG  133 (452)
T PRK07445         81 QQEWQQVLNLVQPDQIWGLDQLKLSH-------------PP---P----LP---S----QGILPNLETGWIMIPTGGSSG  133 (452)
T ss_pred             HHHHHHHHHhcCCCEEEecCcccccc-------------CC---C----CC---c----cccCCCCCCcEEEEeCCCCCC
Confidence            99999999999999999876532110             00   0    00   0    001234689999999999999


Q ss_pred             CCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCC
Q 017382          184 KPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNG  263 (372)
Q Consensus       184 ~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (372)
                      .||+|++||+++...+......+.+.+ +++++++|++|.+|+. .++.++..|+++++.+..........         
T Consensus       134 ~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~---------  202 (452)
T PRK07445        134 QIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQEL---------  202 (452)
T ss_pred             CCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhh---------
Confidence            999999999999988887777776654 4678899999999985 57888999999999874332222222         


Q ss_pred             CCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCcccccccccccccc
Q 017382          264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA  343 (372)
Q Consensus       264 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~  343 (372)
                       ..+++++++.++|+++..+.+.           ...+++++|.+++||+++++++.+.+.+ ++.++++.||+||++..
T Consensus       203 -~~~~~~t~~~~vP~~l~~l~~~-----------~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~  269 (452)
T PRK07445        203 -PPNPSDFFLSLVPTQLQRLLQL-----------RPQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQ  269 (452)
T ss_pred             -hhhcCceEEEehHHHHHHHHhh-----------ChhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhccc
Confidence             3457889999999999998752           1124689999999999999999998876 48999999999998754


Q ss_pred             ccCCCCC--CCCCCcccccCCCceEEEe
Q 017382          344 ISNPLRG--ARKAGTVGNPLPGVQVSMI  369 (372)
Q Consensus       344 ~~~~~~~--~~~~~svG~p~~g~~i~Iv  369 (372)
                      ++.....  ....+++|+|+||++++|+
T Consensus       270 ~~~~~~~~~~~~~~~~G~~~p~~~v~i~  297 (452)
T PRK07445        270 IATLKPDDFLAGNNSSGQVLPHAQITIP  297 (452)
T ss_pred             ccccCchhhccCCCcCCccCCCCeEEEc
Confidence            4322211  2346789999999999985

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.8e-38  Score=303.21  Aligned_cols=319  Identities=19%  Similarity=0.204  Sum_probs=246.4

Q ss_pred             eEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeee
Q 017382           18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP   97 (372)
Q Consensus        18 ~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~   97 (372)
                      .++.++++.+||.||.++++++++.|.+.                 |+++||+|+++++|+++++++++||+++|++++|
T Consensus         3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~   65 (502)
T PRK08276          3 VIMAPSGEVVTYGELEARSNRLAHGLRAL-----------------GLREGDVVAILLENNPEFFEVYWAARRSGLYYTP   65 (502)
T ss_pred             eEecCCCcEEEHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEe
Confidence            45667889999999999999999999994                 9999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--CcccccCCCCCCCCCcccccccc-cccccCCCCCCcEE
Q 017382           98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPAL  174 (372)
Q Consensus        98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~  174 (372)
                      +++.++.+++.+++++++++++++++.....+.+......  ...+.+.... ........+... .........++.++
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~  144 (502)
T PRK08276         66 INWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGP-VPGFRSYEEALAAQPDTPIADETAGAD  144 (502)
T ss_pred             cccccCHHHHHHHHhcCCCCEEEEccchhhHHHHHhhhccccccEEEEeCCC-CCccccHHHHHhcCCCCCCCCCCcceE
Confidence            9999999999999999999999999877766655433322  1111111100 000000000000 01112234567899


Q ss_pred             EEecCCCCCCCceeeeehhhHHHHH------HHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCch
Q 017382          175 IVYTSGTTGKPKGVVHTHKSIDAQV------QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV  248 (372)
Q Consensus       175 i~~TSGtTG~pK~v~~s~~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~  248 (372)
                      ++|||||||.||+|.++|.++....      ...........+++++++.|++|..++.. .+.++..|+++++.+.+++
T Consensus       145 i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~  223 (502)
T PRK08276        145 MLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDA  223 (502)
T ss_pred             EEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCH
Confidence            9999999999999999988765332      11122222346789999999999999864 4578999999999999999


Q ss_pred             hHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC
Q 017382          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (372)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~  328 (372)
                      ..+++.          ++++++|++.++|+++..+.+....      .....+++++|.+++||++++.++.+.+.+.+|
T Consensus       224 ~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~  287 (502)
T PRK08276        224 EEALAL----------IERYRVTHSQLVPTMFVRMLKLPEE------VRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG  287 (502)
T ss_pred             HHHHHH----------HHHhCCeEEEehHHHHHHHHhCccc------cCCCCCcccceEEEecCCCCCHHHHHHHHHHhC
Confidence            999988          7889999999999999998865221      112346889999999999999999999999889


Q ss_pred             CccccccccccccccccCCC-CCCCCCCcccccCCCceEEEeecC
Q 017382          329 HRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       329 ~~l~~~YG~tE~~~~~~~~~-~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ..+++.||+||++.+++... ......+++|+|+ +++++|+|.+
T Consensus       288 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~  331 (502)
T PRK08276        288 PIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDED  331 (502)
T ss_pred             cHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEECCC
Confidence            99999999999987544322 2234568899999 8899999853

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=3.4e-37  Score=320.04  Aligned_cols=326  Identities=13%  Similarity=0.109  Sum_probs=241.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEe---CC--ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            2 EVFKAAYKKGSMARDSVAIRA---DQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~---~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      |+.+.+.+.++++|+++|+..   .+  +++||+|+.++++++|+.|.+                 +|+++||+|+|+++
T Consensus       428 Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-----------------lGV~~GDrVaIls~  490 (1452)
T PTZ00297        428 SLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-----------------LGVRPGDVIGVDCE  490 (1452)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            678899999999999999963   13  689999999999999999999                 59999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCC-C-C---CCC
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-P-N---VSS  151 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~  151 (372)
                      |+++|+++++||+++|++++|+++.  .+++.+++++++++++|++.+..+.+.++....-..++.+... . .   ...
T Consensus       491 N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~  568 (1452)
T PTZ00297        491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVAR  568 (1452)
T ss_pred             CCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccc
Confidence            9999999999999999999999864  6789999999999999999877766655433211222222210 0 0   000


Q ss_pred             --------Ccccccc---cccccccCCCCCCcEEEEe---cCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeE
Q 017382          152 --------ETTVFDQ---SQAEKMDGQRGEDPALIVY---TSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQF  214 (372)
Q Consensus       152 --------~~~~~~~---~~~~~~~~~~~~~~a~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~  214 (372)
                              .......   ..........++|++.|+|   ||||||.||||++||+|++.++.......   ....+|++
T Consensus       569 ~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~  648 (1452)
T PTZ00297        569 DLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLM  648 (1452)
T ss_pred             cCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEE
Confidence                    0000000   0011122346788999996   99999999999999999999988875532   35678999


Q ss_pred             EEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccH--
Q 017382          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT--  292 (372)
Q Consensus       215 l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--  292 (372)
                      ++++|++|+++.. ..+.++..|+++.+   +++..+++.          +++++||+++++|.+|.++.+...+...  
T Consensus       649 Ls~LPLaHI~er~-~~~~~l~~G~~I~~---~d~~~lled----------L~~~rPTv~~~VPrv~ekI~~~i~~~~~~~  714 (1452)
T PTZ00297        649 VHFTPFAMLFNRV-FVLGLFAHGSAVAT---VDAAHLQRA----------FVKFQPTILVAAPSLFSTSRLQLSRANERY  714 (1452)
T ss_pred             EEechHHHHHHHH-HHHHHHHcCCEEEe---CCHHHHHHH----------HHHHCCEEEEecHHHHHHHHHHHHHHhhhh
Confidence            9999999999975 46777999999874   468888888          8889999999999999988765422110  


Q ss_pred             --------------------------------HHHHhhhhhccCceEEEecCC--CCCHHHHHHHHHHhCCccccccccc
Q 017382          293 --------------------------------ELQAASASAAKQLRLMMCGSS--ALPLPVMQQWETITGHRLLERYGMT  338 (372)
Q Consensus       293 --------------------------------~~~~~~~~~l~~lr~v~~gG~--~~~~~~~~~~~~~~~~~l~~~YG~t  338 (372)
                                                      -+...+.....++|++++||+  +++..+.      .++++..+||+|
T Consensus       715 ~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~------~~i~i~~g~glT  788 (1452)
T PTZ00297        715 SAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL------EHISVCYVPCLR  788 (1452)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh------CCceEEEecceE
Confidence                                            011222334478999999984  4443322      267888999999


Q ss_pred             cccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          339 EFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       339 E~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      |+..   .+.....+  ..|+|+||+|+||+|.
T Consensus       789 E~~~---~~~~~~~~--~~G~PlpgvEvKI~~~  816 (1452)
T PTZ00297        789 EVFF---LPSEGVFC--VDGTPAPSLQVDLEPF  816 (1452)
T ss_pred             Eeee---ecCCCCcc--cCCeecCceEEEEccc
Confidence            9532   12222222  3499999999999974

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.6e-36  Score=288.08  Aligned_cols=284  Identities=26%  Similarity=0.370  Sum_probs=230.6

Q ss_pred             eHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHH
Q 017382           28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL  107 (372)
Q Consensus        28 Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l  107 (372)
                      ||+||.++++++|+.|.+                 .|+++||+|+++++|+++++++++|++++|++++|+++.++.+++
T Consensus         1 Ty~~l~~~~~~~a~~l~~-----------------~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~   63 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKA-----------------QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENER   63 (436)
T ss_pred             CHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHH
Confidence            899999999999999999                 499999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCce
Q 017382          108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG  187 (372)
Q Consensus       108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~  187 (372)
                      .+++++++++.+++++......        .....+.....       ..............+++++++|||||||.||+
T Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        64 TNQLEDLDVQLLLTDSLLEEKD--------FQADSLDRIEA-------AGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             HHHHHhcCCCEEEEcCcccccc--------eeecchHhhhh-------cccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            9999999999999987532110        00000000000       00000011123456789999999999999999


Q ss_pred             eeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCC
Q 017382          188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG  267 (372)
Q Consensus       188 v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  267 (372)
                      |.++|+++...+......++++++|++++.+|++|..++. .++.++..|+++++.+.++  .+++.          +++
T Consensus       129 v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~~--~~~~~----------l~~  195 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFN--QLLEM----------IAN  195 (436)
T ss_pred             EEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchHH--HHHHH----------HHH
Confidence            9999999999998888888999999999999999999885 6888999999999988764  66666          788


Q ss_pred             cceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCC
Q 017382          268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP  347 (372)
Q Consensus       268 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~  347 (372)
                      +++|++.++|+++..+.+...            ..+++|.+++||+++++++.+.+.+ +|..+++.||+||++...+..
T Consensus       196 ~~~t~~~~~P~~l~~l~~~~~------------~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~  262 (436)
T TIGR01923       196 ERVTHISLVPTQLNRLLDEGG------------HNENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTA  262 (436)
T ss_pred             hCCeEEEeHHHHHHHHHhCcC------------CCCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCc
Confidence            999999999999999887521            1168999999999999999998876 599999999999998655432


Q ss_pred             -CCCCCCCCcccccCCCceEEEe
Q 017382          348 -LRGARKAGTVGNPLPGVQVSMI  369 (372)
Q Consensus       348 -~~~~~~~~svG~p~~g~~i~Iv  369 (372)
                       .+......++|+|+++++++|.
T Consensus       263 ~~~~~~~~~~~G~~~~~~~~~i~  285 (436)
T TIGR01923       263 TPEMLHARPDVGRPLAGREIKIK  285 (436)
T ss_pred             CccccccccCCCccCCCcEEEEE
Confidence             2222222359999999999993

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.6e-36  Score=294.24  Aligned_cols=281  Identities=18%  Similarity=0.154  Sum_probs=209.0

Q ss_pred             cCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch------HHHHHHHHhhcCCcccccCCCC-
Q 017382           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY------REVLQNVASKSGAKFSLIPPVP-  147 (372)
Q Consensus        75 ~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~-  147 (372)
                      ++|++|++++++||+++|++++|+++.++.+++.++++.++++++|+++..      .+.+..+........+.+.... 
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998642      1222222111111111111000 


Q ss_pred             --------CCCCCcccc---ccc----ccc-cccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCC
Q 017382          148 --------NVSSETTVF---DQS----QAE-KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA  211 (372)
Q Consensus       148 --------~~~~~~~~~---~~~----~~~-~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~  211 (372)
                              .........   ...    ... ......++++++|+|||||||.||||++||++++.........+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence                    000000000   000    000 1112246899999999999999999999999988776666666788899


Q ss_pred             CeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhc
Q 017382          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (372)
Q Consensus       212 d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  290 (372)
                      |++++..|++|..++. .++.++..|+++++.+. +++..+++.          ++++++|++.++|+++..|++.... 
T Consensus       161 d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~----------i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        161 DVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKF----------VQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             CEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHH----------HHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            9999999999999975 68889999999999874 788888888          8899999999999999998764210 


Q ss_pred             cHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHh--CCcccccccccccccccc-CCCCCCCCCCcccccCCCceEE
Q 017382          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVS  367 (372)
Q Consensus       291 ~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~-~~~~~~~~~~svG~p~~g~~i~  367 (372)
                           .....++++||.+++||+++++++.+++.+.+  +.++++.||+||++...+ .......+.+++|+|.+|++++
T Consensus       229 -----~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  303 (499)
T PLN03051        229 -----AMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFV  303 (499)
T ss_pred             -----ccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEE
Confidence                 02234678999999999999999998777643  478999999999864332 2222234568999999999999


Q ss_pred             EeecC
Q 017382          368 MILLL  372 (372)
Q Consensus       368 Ivd~d  372 (372)
                      |+|.+
T Consensus       304 ivd~~  308 (499)
T PLN03051        304 LLNDN  308 (499)
T ss_pred             EECCC
Confidence            99964

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-36  Score=284.41  Aligned_cols=326  Identities=24%  Similarity=0.287  Sum_probs=261.3

Q ss_pred             CCCceEEEeC------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHH
Q 017382           14 ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG   87 (372)
Q Consensus        14 ~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A   87 (372)
                      .++.++.+++      ...+||.|+.+++.++|+.|..                 +|+++||+|++.+|+.++++++++|
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-----------------~g~~kGD~V~~~mPm~~e~~ia~lA  140 (626)
T KOG1175|consen   78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-----------------CGLKKGDTVAIYMPMIPEAVIAMLA  140 (626)
T ss_pred             CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-----------------cCCCCCcEEEEeccCChHHHHHHHH
Confidence            5888888863      2458999999999999999997                 5999999999999999999999999


Q ss_pred             HHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHH---------HHHHhhcCCcccccCCC------CCCCCC
Q 017382           88 TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL---------QNVASKSGAKFSLIPPV------PNVSSE  152 (372)
Q Consensus        88 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~~~~~~~~~~~~~~~------~~~~~~  152 (372)
                      |.++|++.+++-..++++++...++.++++++++.+...+..         .+...............      ......
T Consensus       141 ~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~  220 (626)
T KOG1175|consen  141 CARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFW  220 (626)
T ss_pred             HhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccH
Confidence            999999999999999999999999999999999987543322         22211111000000000      000000


Q ss_pred             ccc-ccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhH-HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 017382          153 TTV-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       153 ~~~-~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                      ... ....+...+...+.+|+.+|+|||||||.||++.+++... +..+.....++.++++|++.+..-+.|+.+.+...
T Consensus       221 ~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~  300 (626)
T KOG1175|consen  221 SLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVL  300 (626)
T ss_pred             HHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhh
Confidence            111 1112222355667789999999999999999999988864 45555566778999999999999999999999888


Q ss_pred             HHHHHcCceEEEcCC--CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEE
Q 017382          231 LAPLYAGATVEFMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v  308 (372)
                      +.+|++|+++++.+.  +++..+++.          +.++++|+++..|+.++.+.+...      .....++.++||.+
T Consensus       301 ~gpl~~Ga~~vl~~g~p~~~~~~~~~----------v~k~~it~l~t~pt~~r~l~~~~~------~~~~~~~~~sLk~~  364 (626)
T KOG1175|consen  301 YGPLLNGATVVLYEGPPFDPGRIWKI----------LDKYKVTVLYTAPTAYRLLRRLGQ------EDVTSYSLKSLRTC  364 (626)
T ss_pred             hhhhhcCcEEEEEcCCCCChhhhhhh----------HhhcceEEEEeccHHHHHHHHhcc------ccccccccceEEEE
Confidence            889999999999974  578889988          899999999999999998876533      24445566889999


Q ss_pred             EecCCCCCHHHHHHHHHHhCC-ccccccccccccccccCCCCCC--CCCCcccccCCCceEEEeecC
Q 017382          309 MCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~--~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .++||+++++.++.|.+.++. +|++.||+||+|..++.+....  -++++.|+|.+|+++.|.|++
T Consensus       365 ~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~  431 (626)
T KOG1175|consen  365 GSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDEN  431 (626)
T ss_pred             eecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCC
Confidence            999999999999999999987 6999999999998777554444  788999999999999999974

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=2e-29  Score=252.13  Aligned_cols=322  Identities=24%  Similarity=0.350  Sum_probs=255.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|...+...|++.|++..+.++||+|+..++.++|+.|.+.                 |+++++.|+++.+.+.+.
T Consensus       228 ~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~-----------------g~~~~~~V~i~~~rs~~~  290 (642)
T COG1020         228 TIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISL-----------------GVGPGETVAILADRSLEL  290 (642)
T ss_pred             hHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCeEEEEcCCCHHH
Confidence            578899999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      ++.++|++++|+.++|+++..+.+.+..+++++++..+++..........    ...  +.+..  ....     .....
T Consensus       291 i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~--~~~~-----~~~~~  357 (642)
T COG1020         291 VVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG----LPG--LALDD--ALSE-----IPDTD  357 (642)
T ss_pred             HHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc----CCc--ccccc--cccc-----CCccC
Confidence            99999999999999999999999999999999999999998432111000    000  00000  0000     00000


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......+++.++++|||||||.||||..+|+++.+.+......+.....|+++...++++..+.+ .++.++..|++++
T Consensus       358 ~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l~  436 (642)
T COG1020         358 PIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVF-EIFGALLEGARLV  436 (642)
T ss_pred             cccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHH-HHHHHHhCCCEEE
Confidence            001233558999999999999999999999999999888888889999999999999999988886 6999999999999


Q ss_pred             EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.+.   .++..+.+.          +.++++|++..+|.++..+......      .........+|.+++||+.++.+
T Consensus       437 ~~~~~~~~~~~~l~~~----------~~~~~vt~~~~~p~~~~~~~~~~~~------~~~~~~~~~lr~~~~gGe~l~~~  500 (642)
T COG1020         437 LAPALLQVDPAALLEL----------LEAQGITVLLLVPLLLRLLLLAALA------PDLISPCERLRQLLSGGEALPLA  500 (642)
T ss_pred             ecCccccCCHHHHHHH----------HHHcCCEEEEecHHHHHHHHhchhh------ccccCCcccccEEEEcCCCCCHH
Confidence            9985   466777776          6788999999999999988764110      00111223599999999999999


Q ss_pred             HHHHHHHHh--CCccccccccccccccccCCCCC--CCCCCcccccCCCceEEEee
Q 017382          319 VMQQWETIT--GHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       319 ~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~--~~~~~svG~p~~g~~i~Ivd  370 (372)
                      +.+.+....  ...+.|.||.||+...+......  ......+|+|+++++++|+|
T Consensus       501 ~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild  556 (642)
T COG1020         501 LVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD  556 (642)
T ss_pred             HHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC
Confidence            999998765  46899999999965544321111  11146899999999999988

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=6.5e-27  Score=202.07  Aligned_cols=207  Identities=18%  Similarity=0.179  Sum_probs=156.6

Q ss_pred             HHHhCCcCCCceEEEe--C----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            7 AYKKGSMARDSVAIRA--D----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         7 l~~~a~~~~~~~al~~--~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +...+.++|+++|+++  +    ++.+||+||.++++++|+.|++.                .|+++||+|+++++|+++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~Gv~~GdrV~i~~~n~~~   65 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDE----------------LDAEPGSRVALDLPAHWQ   65 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHH
Confidence            3566778999999974  2    23699999999999999999971                299999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCccccc-----CC-C--CCCCCC
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI-----PP-V--PNVSSE  152 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-----~~-~--~~~~~~  152 (372)
                      ++++++|++++|++++|++             .++++++|++++..+.+..     ......+     .. .  ......
T Consensus        66 ~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  127 (227)
T TIGR03089        66 TAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAAG-----SGEVVALSLDPLGRRVAGELPPGV  127 (227)
T ss_pred             HHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhccc-----CCceEEEeccccccCCCCCCCCcc
Confidence            9999999999999999995             7899999999877665431     1111111     00 0  000000


Q ss_pred             cccccccc----ccccc-CCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 017382          153 TTVFDQSQ----AEKMD-GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (372)
Q Consensus       153 ~~~~~~~~----~~~~~-~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~  227 (372)
                      ........    ..... ...++|++.|+||||+         +|.++..+.    ...+++++|+++ .+|++|+.|+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~  193 (227)
T TIGR03089       128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFL  193 (227)
T ss_pred             cchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHH
Confidence            11111111    01111 3456899999999985         666665554    455788999999 99999999998


Q ss_pred             HHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCccee
Q 017382          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT  271 (372)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t  271 (372)
                      ..++.+++.|+++++.++|++..+++.          |++++||
T Consensus       194 ~~~~~~l~~G~t~v~~~rFd~~~~l~~----------i~~~~vT  227 (227)
T TIGR03089       194 ATLLAPLAAGGSLVLVTHPDPARLDQI----------AETERVT  227 (227)
T ss_pred             HHHHHHhccCceEEEecCCCHHHHHHH----------HHhhcCC
Confidence            789999999999999999999999999          7788876

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.91  E-value=4.2e-23  Score=192.17  Aligned_cols=169  Identities=20%  Similarity=0.261  Sum_probs=138.0

Q ss_pred             CCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccC--CCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCC
Q 017382          169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT--SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF  246 (372)
Q Consensus       169 ~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~  246 (372)
                      .+..++++|||||||.||+|++||+++...+......+++.  +.|++++.+|++|..++...++.++..|+++++.+.+
T Consensus        94 ~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        94 TPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            35688999999999999999999999999888877777664  3468999999999999876778889999999999999


Q ss_pred             chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHH
Q 017382          247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI  326 (372)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~  326 (372)
                      ++..+++.          ++.+  |+++++|+++..+.+.            ..++++++. ++||+++++++++.+.+.
T Consensus       174 ~~~~~l~~----------i~~~--t~~~~~P~~l~~l~~~------------~~~l~slr~-i~gGa~l~~~l~~~~~~~  228 (386)
T TIGR02372       174 PASGIMRH----------ARPG--DLIVGTPFIWEQLADL------------DYRLPGVVG-VSSGAPSTAATWRCLLAA  228 (386)
T ss_pred             ChHHHHHh----------hccC--CEEEECcHHHHHHHhh------------CcCCCccee-EecCCCCCHHHHHHHHHh
Confidence            98888877          4433  8899999999988763            124677886 678999999999999875


Q ss_pred             hCC-ccccccccccccccccCCCCCCCCCCcccccCCCceEEE
Q 017382          327 TGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSM  368 (372)
Q Consensus       327 ~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~I  368 (372)
                       +. .+++.||+||++++.+..     .++..|+|+|++++++
T Consensus       229 -g~~~v~~~YG~TEt~~i~~~~-----~~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       229 -GLARLLEVYGATETGGIGLRE-----APDDPFRLLPDLACFA  265 (386)
T ss_pred             -cccchhheecccccccccccc-----CCCCCcccCCCccccC
Confidence             64 799999999998655422     1234688999988765

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.88  E-value=1.4e-21  Score=181.82  Aligned_cols=172  Identities=27%  Similarity=0.379  Sum_probs=137.7

Q ss_pred             CCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEE---
Q 017382          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF---  242 (372)
Q Consensus       166 ~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~---  242 (372)
                      ...++++++++|||||||.||+|+++|.++..........+  ...++++..+|++|..++. .++.++..|++.++   
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecCc
Confidence            34568999999999999999999999999988777655543  3567899999999999985 57788999998887   


Q ss_pred             cCCCchhHHHHHHHhhCCCCCCCCCcc--eeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          243 MPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      .+.+++..+++.          +++++  .++...+|..+..++....         ...+++++|.+++||+++++++.
T Consensus       108 ~~~~~~~~~~~~----------i~~~~~~~~~~~~~p~~l~~~~~~~~---------~~~~~~~l~~i~~gG~~l~~~~~  168 (358)
T PRK07824        108 SAGFDPTALPRA----------VAELGGGRRYTSLVPMQLAKALDDPA---------ATAALAELDAVLVGGGPAPAPVL  168 (358)
T ss_pred             CCCcCHHHHHHH----------HHHhCCCceEEEecHHHHHHHHhCcc---------ccCCcccceEEEECCCCCCHHHH
Confidence            345788888888          55555  5566778887776655311         12367899999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      +.+.+ ++.++++.||+||++..+.          ..|+|++|++++|.|
T Consensus       169 ~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~  207 (358)
T PRK07824        169 DAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED  207 (358)
T ss_pred             HHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC
Confidence            98876 4999999999999875332          358999999999854

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.83  E-value=1.6e-19  Score=171.61  Aligned_cols=184  Identities=18%  Similarity=0.143  Sum_probs=136.3

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH---hhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  244 (372)
                      +.++++.+++||||||.||++.++|.++........   ..+++.++|++++..++.+..+.+...+.++..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            446788999999999999999999999876544332   34578889999887766544333333566788999999888


Q ss_pred             CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHH
Q 017382          245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE  324 (372)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~  324 (372)
                      ..+++.+++.          |+++++|+++++|+++..|++.+.....      .....++|.+++||+++++++.+.++
T Consensus       153 ~~~~~~~~~~----------i~~~~~t~l~~~Ps~l~~L~~~~~~~~~------~~~~~~lr~i~~~ge~l~~~~~~~i~  216 (422)
T TIGR02155       153 GGQTEKQVQL----------IQDFKPDIIMVTPSYMLNLLEELKRMGI------DPAQTSLQVGIFGAEPWTNAMRKEIE  216 (422)
T ss_pred             CCCHHHHHHH----------HHHHCCCEEEEcHHHHHHHHHHHHHcCC------CcccCceEEEEEeCCcCCHHHHHHHH
Confidence            7778888888          8889999999999999999875321110      11235899999999999999999999


Q ss_pred             HHhCCccccccccccccc-cccCCCCCCCCCCcccccC--CCceEEEeec
Q 017382          325 TITGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPL--PGVQVSMILL  371 (372)
Q Consensus       325 ~~~~~~l~~~YG~tE~~~-~~~~~~~~~~~~~svG~p~--~g~~i~Ivd~  371 (372)
                      +.||+++++.||+||+++ ....... .   ...|.++  +++.++|+|+
T Consensus       217 ~~~g~~v~~~YG~tE~~~~~~~~~~~-~---~~~g~~~~~~~~~~eivd~  262 (422)
T TIGR02155       217 ARLGMKATDIYGLSEVIGPGVAMECV-E---TQDGLHIWEDHFYPEIIDP  262 (422)
T ss_pred             HHhCCceEecccchhhcCCceeeccc-c---cCCCceEecCeeEEEEECC
Confidence            999999999999999853 2211110 0   1123344  3567778874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.80  E-value=3.3e-17  Score=159.84  Aligned_cols=298  Identities=14%  Similarity=0.229  Sum_probs=216.9

Q ss_pred             HHHHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      ++.+.|+..++.+||.+|+..      ...++||.+|..++.+++..|..+                .-++.||.|++++
T Consensus       771 ~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k----------------~~lk~Gd~V~Lmy  834 (1363)
T KOG3628|consen  771 TILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDK----------------GHLKAGDHVVLMY  834 (1363)
T ss_pred             HHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhc----------------ccCCCCCeEEEEc
Confidence            688999999999999999985      247999999999999999999986                4789999999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCCCC------HHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc------cccc
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALSYP------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK------FSLI  143 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~------~~~~  143 (372)
                      ++++|++++++||+.+|.+++|++|...      -..+..+++.+++..|+++......++.-.......      +...
T Consensus       835 ~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~  914 (1363)
T KOG3628|consen  835 PPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVL  914 (1363)
T ss_pred             CChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcc
Confidence            9999999999999999999999988543      345778899999999999987655444332211111      1111


Q ss_pred             CCCCCC-CCCcc-cccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCch
Q 017382          144 PPVPNV-SSETT-VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (372)
Q Consensus       144 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  221 (372)
                      ++.+.. ..... ..+..-..++....++.+|++=+.--++|.--++.+||.++++.+........+.+..-++.+.+.+
T Consensus       915 ~~~~~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~  994 (1363)
T KOG3628|consen  915 PKLPETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY  994 (1363)
T ss_pred             cccchhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence            111110 00000 0000001112233457889999988899999999999999999999999988888887888888888


Q ss_pred             hHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHh
Q 017382          222 HVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (372)
Q Consensus       222 ~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  297 (372)
                      -..|+....+...++|...++.++    .++..++..          ++++++.-++.+=..++...+.+...-.+. ..
T Consensus       995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~----------i~~~kvkDt~~~~~tln~c~~~l~t~~enl-~~ 1063 (1363)
T KOG3628|consen  995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQI----------ISQYKVKDTYPTYSTLNLCQKGLETSVENL-SK 1063 (1363)
T ss_pred             cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHH----------HhcccccccchhHHHHHHHHhccccccchh-hh
Confidence            777877667777999999888775    467777777          899999999988888887776544322111 11


Q ss_pred             hhhhccCceEEEecCCCCCHHHHHHHHHHh
Q 017382          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT  327 (372)
Q Consensus       298 ~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~  327 (372)
                      ...+.++ ..++..=++....+...|.+.|
T Consensus      1064 ~gnn~s~-s~vv~~~~RPr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1064 RGNNTSS-SIVVPAEERPRIALIASFKKLF 1092 (1363)
T ss_pred             hhccccc-ceeeecCCccHHHHHHHHHHHH
Confidence            2233443 4444445555567777777766

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.78  E-value=3.9e-18  Score=162.56  Aligned_cols=180  Identities=19%  Similarity=0.135  Sum_probs=133.1

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---cccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  244 (372)
                      +.++++.+.+||||||.||++.+||..+..........   .+++++|+++...|..+..+.....+++...|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            34678899999999999999999999988766554443   378899999999998877665444566678888876443


Q ss_pred             CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHH
Q 017382          245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE  324 (372)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~  324 (372)
                      .  ....++.          ++++++|.+.++|+.+..+++.+...+.      .....++|.+++||+++++++.+.++
T Consensus       164 ~--~~~~~~~----------i~~~~~t~l~~~ps~ll~La~~~~~~g~------~~~~~~lr~ii~gGE~l~~~~r~~ie  225 (445)
T TIGR03335       164 K--CTFPIRI----------IESYRPTGIVASVFKLLRLARRMKAEGI------DPAESSIRRLVVGGESFADESRNYVE  225 (445)
T ss_pred             c--hhHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcCC------CcccCcceEEEEcCCCCCHHHHHHHH
Confidence            2  2344555          7789999999999998888765322110      11236899999999999999999999


Q ss_pred             HHhCCccccccccccccccccCCCCCCCCCCcccccC--CCceEEEeecC
Q 017382          325 TITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPL--PGVQVSMILLL  372 (372)
Q Consensus       325 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~--~g~~i~Ivd~d  372 (372)
                      +.||+++++.||+||++....+..       ..|..+  +.+.++|+|++
T Consensus       226 ~~~g~~v~~~YG~TE~~~~~~c~~-------~~g~h~~~d~~~vEIvDp~  268 (445)
T TIGR03335       226 ELWGCEVYNTYGSTEGTMCGECQA-------VAGLHVPEDLVHLDVYDPR  268 (445)
T ss_pred             HHhCCcEEecCChhhhhheEEecC-------CCCccccCCceEEEEEcCC
Confidence            999999999999999863221111       124444  34678888864

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=3.6e-14  Score=142.34  Aligned_cols=305  Identities=18%  Similarity=0.205  Sum_probs=195.1

Q ss_pred             HHHHHHHhCCcCCCceEEEe------C--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEE
Q 017382            3 VFKAAYKKGSMARDSVAIRA------D--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV   74 (372)
Q Consensus         3 ~~~~l~~~a~~~~~~~al~~------~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~   74 (372)
                      +.+.+.+.+.+.|...+..+      .  -..+||.+....++.++..+.+                 .|...|+.|+++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~-----------------~~~~~~~~v~i~  100 (1032)
T KOG1178|consen   38 LEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVS-----------------LGSLRGTTVAIY  100 (1032)
T ss_pred             hhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhh-----------------cccccCceEEEe
Confidence            45577788888888888775      1  2689999999999999999999                 489999999999


Q ss_pred             cCCCHhHHHHHHHHHhhCceeeeCCCCCC----HHHHHHHHhhC-CceEEEeccchHHHHHHHHhhcCCcccccCCCCCC
Q 017382           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYP----ESELLHVMHDS-DISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV  149 (372)
Q Consensus        75 ~~n~~~~~~~~~A~~~~G~~~v~l~~~~~----~~~l~~~l~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (372)
                      +..+.++++..++.+++|..+++++|.++    .+++..+.... ....-+...  .+...........+       ..+
T Consensus       101 ~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~--l~i~~~~~~~~~~~-------~sv  171 (1032)
T KOG1178|consen  101 MLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRR--LNIIDILLNSLFPK-------LSV  171 (1032)
T ss_pred             ccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhh--hhhHHHHhhccccc-------cch
Confidence            99999999999999999999999999998    33222211110 000111110  11111111111000       000


Q ss_pred             CCCcccccc----cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHH
Q 017382          150 SSETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG  225 (372)
Q Consensus       150 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~  225 (372)
                      ....+....    ...+......++..+.+.||||+||.||+|..+|..+.+...+....+.....+++-.....+..-.
T Consensus       172 ~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~  251 (1032)
T KOG1178|consen  172 ETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDT  251 (1032)
T ss_pred             hhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccc
Confidence            000000000    1111222345678999999999999999999999999999999988888888887643444433322


Q ss_pred             HHHHHHHHHHcCceEEEcCCCch---hHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHH--hhh-
Q 017382          226 LFNALLAPLYAGATVEFMPKFSV---RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA--ASA-  299 (372)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~--~~~-  299 (372)
                      .-..+.+.|+.|+.+..+.....   ..+...          +++++++.++.+|++.+.+.......-.....  .-. 
T Consensus       252 i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~----------le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~d  321 (1032)
T KOG1178|consen  252 IQKFIGALLFNGNNLLVPTATIKDTPGQLAST----------LERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSD  321 (1032)
T ss_pred             hHHHHhhHhhcCceeecccccCccchhhHHHH----------HHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhccc
Confidence            22223444566666666554433   333333          88899999999999988877654431000010  011 


Q ss_pred             --hhccCceEEEecCCCCCHHHHHHHHHHh--CCccccccccccccccc
Q 017382          300 --SAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAI  344 (372)
Q Consensus       300 --~~l~~lr~v~~gG~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~  344 (372)
                        ...+.|+....+|++...+++..+.+.+  +..... |+.++..+-.
T Consensus       322 l~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~-y~s~~~~~~~  369 (1032)
T KOG1178|consen  322 LLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLP-YLSTDPTGLV  369 (1032)
T ss_pred             ccccchhheeeeecCCccchhhhhhhhhcccceeeeec-ccCCCCccce
Confidence              1234899999999999999888666655  222222 7777765443

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.51  E-value=4.4e-13  Score=122.98  Aligned_cols=159  Identities=20%  Similarity=0.154  Sum_probs=123.0

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCch-hHHHHHHHHHHHHHcCceEEEc
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVEFM  243 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~-~~~~~~~~~~~~l~~G~~~~~~  243 (372)
                      +.+++..|-.||||||+|+-+.+++..+......+...+   +...+|++..+.-.. +..|+. .-.++--.|++++-.
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~-~~~ga~rig~~vip~  166 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLG-LHYGAERIGATVIPI  166 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCch-hHHHHHhhCEEEEcc
Confidence            345666799999999999999999998877666666554   677888876655532 222221 233444577777766


Q ss_pred             CCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHH
Q 017382          244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW  323 (372)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~  323 (372)
                      ..-+.+.-.+.          ++++++|++.++|+.+..+++.+...+      ...+-.++|.+++|||++++++.+.+
T Consensus       167 ~~g~~~~~~~l----------~~df~~tvI~~tps~~l~lae~~~~~G------~~~~~~~lk~~i~gaE~~see~R~~i  230 (438)
T COG1541         167 SGGNTERQLEL----------MKDFKPTVIAATPSYLLYLAEEAEEEG------IDPDKLSLKKGIFGAEPWSEEMRKVI  230 (438)
T ss_pred             CCccHHHHHHH----------HHhcCCcEEEEChHHHHHHHHHHHHcC------CChhhcceeEEEEecccCCHHHHHHH
Confidence            66677777777          889999999999999999999865432      12244789999999999999999999


Q ss_pred             HHHhCCcccccccccccccc
Q 017382          324 ETITGHRLLERYGMTEFVMA  343 (372)
Q Consensus       324 ~~~~~~~l~~~YG~tE~~~~  343 (372)
                      .+.||+..++.||+||..+.
T Consensus       231 e~~~g~~~~diYGltE~~g~  250 (438)
T COG1541         231 ENRFGCKAFDIYGLTEGFGP  250 (438)
T ss_pred             HHHhCCceeeccccccccCC
Confidence            99999999999999998655

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.14  E-value=7.2e-10  Score=104.11  Aligned_cols=147  Identities=10%  Similarity=0.050  Sum_probs=97.4

Q ss_pred             cEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---cccCCCCeEEEecCchhHHHHHHHHHHHHHcCce-EEEcC-CC
Q 017382          172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT-VEFMP-KF  246 (372)
Q Consensus       172 ~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~-~~~~~-~~  246 (372)
                      -..+..||||||+|=.+..+..............   .++..++++...+.-.   +   .++..+.+... +-..+ ..
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~---~---~ly~~~~~~~~~~~~~~l~~  174 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRAD---N---NLYQSVNNRWISLDFFDLLA  174 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccC---h---hHHHHHHhccceeeecCCCc
Confidence            4467789999999999999988764433322221   1445555555442110   0   11222222211 12221 13


Q ss_pred             chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHH
Q 017382          247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI  326 (372)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~  326 (372)
                      +.+..++.          |++++|+++.+.|+.+..|++....        ...+ .+++.++++||+++++..+.+++.
T Consensus       175 ~~~~~l~~----------L~~~~P~~L~g~pS~l~~LA~~~~~--------~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~  235 (430)
T TIGR02304       175 PFQAHIKR----------LNQRKPSIIVAPPSVLRALALEVME--------GELT-IKPKKVISVAEVLEPQDRELIRNV  235 (430)
T ss_pred             CHHHHHHH----------HHHhCCCEEEEcHHHHHHHHHHHHh--------cCCC-CCceEEEEccCCCCHHHHHHHHHH
Confidence            44555565          8889999999999999999886332        1112 468999999999999999999999


Q ss_pred             hCCccccccccccccccc
Q 017382          327 TGHRLLERYGMTEFVMAI  344 (372)
Q Consensus       327 ~~~~l~~~YG~tE~~~~~  344 (372)
                      ||+++++.||+|| |.++
T Consensus       236 fg~~V~~~YG~tE-g~la  252 (430)
T TIGR02304       236 FKNTVHQIYQATE-GFLA  252 (430)
T ss_pred             hCCCeeEccCCch-hheE
Confidence            9999999999999 5443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.11  E-value=6.9e-10  Score=109.61  Aligned_cols=289  Identities=19%  Similarity=0.150  Sum_probs=201.3

Q ss_pred             HHHHHHhCCcCCCceEEEeC-----CceeeHHHHHHHHHHHHH-HHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            4 FKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISS-LLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~~-----~~~~Ty~el~~~~~~la~-~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ...+++....++...|.+.-     ...+||..+..++.+.|+ .|.+                 -|..++|+|.+++..
T Consensus        97 ~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~k-----------------sgl~~~~~vvL~Y~~  159 (1363)
T KOG3628|consen   97 IAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNK-----------------SGLKPGDRVVLYYRK  159 (1363)
T ss_pred             HHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhc-----------------cCCCCCcEEEEEEEh
Confidence            34455555777778888752     258999999999999999 5555                 599999999999998


Q ss_pred             C--HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC-CcccccCCCCCCCCCcc
Q 017382           78 S--FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETT  154 (372)
Q Consensus        78 ~--~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (372)
                      +  .|+++..++|...|..++|+.+..+-+++..+++....+++++..+..+.+........ .+.+.......+.    
T Consensus       160 ~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k----  235 (1363)
T KOG3628|consen  160 CEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFK----  235 (1363)
T ss_pred             hhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhccccc----
Confidence            8  99999999999999999999999999999999999999999999876655443321100 0100000000000    


Q ss_pred             cccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH--------------------hhcccCCCCeE
Q 017382          155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--------------------EAWEYTSADQF  214 (372)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--------------------~~~~~~~~d~~  214 (372)
                      .....+....+...-. ..+|-||++++|+--|++.+|. ++.+.+...                    ..++....+.+
T Consensus       236 ~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~  313 (1363)
T KOG3628|consen  236 GNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVL  313 (1363)
T ss_pred             ceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccce
Confidence            0000011111111122 7899999999999999999998 554443322                    22244667888


Q ss_pred             EEecCchhHHHHHHHHHHHHHcCceEEEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhcc
Q 017382          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (372)
Q Consensus       215 l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  291 (372)
                      +.........|++++++.++++|.|.+..|+   ..|..+...          +.+++.+++..--..++.....+...+
T Consensus       314 l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l----------~~k~R~~~~ltd~~~Lkq~~~ny~~~p  383 (1363)
T KOG3628|consen  314 LTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANL----------ITKYRATWSLTDYAGLKQPVYNYQEDP  383 (1363)
T ss_pred             eeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhh----------hccceeEEEeecccccCcccccccCCc
Confidence            8888888889999999999999999999987   455544444          788999988776555555444332211


Q ss_pred             HH---HHHhhhhhccCceEEEecCCCCCHHHHHHHHH
Q 017382          292 TE---LQAASASAAKQLRLMMCGSSALPLPVMQQWET  325 (372)
Q Consensus       292 ~~---~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~  325 (372)
                      .+   ....+..+++++|.+++.-..+..+.......
T Consensus       384 ~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~  420 (1363)
T KOG3628|consen  384 KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSD  420 (1363)
T ss_pred             ccccchhhccCCCccceeeeEEeeeecchHHHHHHHH
Confidence            11   12233468999999999988888765544433

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.15  E-value=0.00014  Score=67.24  Aligned_cols=166  Identities=16%  Similarity=0.233  Sum_probs=94.6

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---c-ccCCC-CeEEEecCchhHHH----HHHHHHHHHHcCc
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---W-EYTSA-DQFLHCLPLHHVHG----LFNALLAPLYAGA  238 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~~-d~~l~~~pl~~~~~----~~~~~~~~l~~G~  238 (372)
                      ..+++..++.||||||.|--+.+.+..+..+.......   + ..... -.++...|-.....    ........+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            34677889999999999866666666555554333322   2 22222 23333334332111    1112222344555


Q ss_pred             eEEEcC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhcc-CceEEEecC----
Q 017382          239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRLMMCGS----  312 (372)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~-~lr~v~~gG----  312 (372)
                      ...+-. .++.+...+.+.+.      ..+.++..+++.|.++-.+++.+++.+.      ...++ ..+.+-.||    
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~------~~~~~pv~l~Gftf~~~~~~~~l~~~~~------~~~L~~~s~vi~~GGwK~~  234 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRA------EHSGEPVLLFGFTFFIWFLLDELEERGI------RFRLPKGSIVIHGGGWKGR  234 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHH------HhCCCCEEEECchHHHHHHHHHHHhcCC------cccCCCCCEEEeCCCCCcc
Confidence            533322 35677666665432      3567788999999887777665543221      12333 345555554    


Q ss_pred             --CCCCH-HHHHHHHHHhCC----cccccccccccccccc
Q 017382          313 --SALPL-PVMQQWETITGH----RLLERYGMTEFVMAIS  345 (372)
Q Consensus       313 --~~~~~-~~~~~~~~~~~~----~l~~~YG~tE~~~~~~  345 (372)
                        +.++. +..+.+.+.||+    .+++.|||||.....+
T Consensus       235 ~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~  274 (365)
T PF04443_consen  235 RKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAY  274 (365)
T ss_pred             ccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhhe
Confidence              45654 666666778887    7899999999765443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.46  E-value=0.16  Score=47.74  Aligned_cols=92  Identities=16%  Similarity=0.131  Sum_probs=74.9

Q ss_pred             eeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCCC
Q 017382           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSYP  103 (372)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~~  103 (372)
                      -+|+.+....+..+|+.|..                 +|..+||+|..+..-+  ..-+-..+|+.++|+.++|+.+.. 
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~-----------------~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-  170 (438)
T COG1541         109 GYTAKDIERWAELLARSLYS-----------------AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-  170 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHH-----------------ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-
Confidence            59999999999999999999                 5999999999887732  122678889999999999998854 


Q ss_pred             HHHHHHHHhhCCceEEEeccchHHHHHHHHhh
Q 017382          104 ESELLHVMHDSDISMVLSTEDYREVLQNVASK  135 (372)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~  135 (372)
                      -+.-..++++.++.++.+.+.+...+.+....
T Consensus       171 ~~~~~~l~~df~~tvI~~tps~~l~lae~~~~  202 (438)
T COG1541         171 TERQLELMKDFKPTVIAATPSYLLYLAEEAEE  202 (438)
T ss_pred             HHHHHHHHHhcCCcEEEEChHHHHHHHHHHHH
Confidence            34456789999999999999877665555443

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=94.02  E-value=0.15  Score=50.03  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             CCCCCCcEEEEecCCCCCC-CceeeeehhhHHH
Q 017382          166 GQRGEDPALIVYTSGTTGK-PKGVVHTHKSIDA  197 (372)
Q Consensus       166 ~~~~~~~a~i~~TSGtTG~-pK~v~~s~~~l~~  197 (372)
                      ...++.+.+...||||||. ||-+.+|...+..
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            3456778999999999999 9999999988755

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=91.87  E-value=8.7  Score=38.19  Aligned_cols=43  Identities=12%  Similarity=0.087  Sum_probs=30.4

Q ss_pred             hhccCceEEEecCCCCCHHHHHHHHHHh-CCcccc-ccccccccc
Q 017382          300 SAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLE-RYGMTEFVM  342 (372)
Q Consensus       300 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~-~YG~tE~~~  342 (372)
                      ...+++++|.+--..-..+....++..+ |.+++. .||+||+-+
T Consensus       290 rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~  334 (606)
T PLN02247        290 RLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYF  334 (606)
T ss_pred             HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEE
Confidence            4568889888865555666667776555 566665 999999653

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=90.67  E-value=9.2  Score=38.01  Aligned_cols=44  Identities=9%  Similarity=0.039  Sum_probs=30.8

Q ss_pred             hhhccCceEEEecCCCCCHHHHHHHHHHh-CCcccc-ccccccccc
Q 017382          299 ASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLE-RYGMTEFVM  342 (372)
Q Consensus       299 ~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~-~YG~tE~~~  342 (372)
                      ....+++++|.+-...-..+....++..+ |.+++. .|++||+-+
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~  345 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYF  345 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEE
Confidence            34568899888766555666666666555 666665 999999653

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=85.59  E-value=8.2  Score=37.06  Aligned_cols=83  Identities=12%  Similarity=0.027  Sum_probs=61.8

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh--HHHHHHHHHhhCceeeeCCCCC
Q 017382           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVAGVLGTWFSGCIAVPLALSY  102 (372)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~--~~~~~~A~~~~G~~~v~l~~~~  102 (372)
                      ..+|.+++...+...+..+..                 +|+++||++.+..+.+..  .....+++..+|+.++|...  
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~-----------------~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--  164 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVS-----------------QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--  164 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--
Confidence            358999998888888888877                 499999999998876643  23445778899998887653  


Q ss_pred             CHHHHHHHHhhCCceEEEeccchHH
Q 017382          103 PESELLHVMHDSDISMVLSTEDYRE  127 (372)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~  127 (372)
                       ......++++.++..++......-
T Consensus       165 -~~~~~~~i~~~~~t~l~~~ps~ll  188 (445)
T TIGR03335       165 -CTFPIRIIESYRPTGIVASVFKLL  188 (445)
T ss_pred             -hhHHHHHHHHhCCCEEEECHHHHH
Confidence             233466788899999887665433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=85.37  E-value=7.5  Score=36.92  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             eeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH--hHHHHHHHHHhhCceeeeCCCCCC
Q 017382           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSYP  103 (372)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~--~~~~~~~A~~~~G~~~v~l~~~~~  103 (372)
                      .+|..++......++..+..                 +|+++||++......+.  ......++....|+.+++++... 
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~-----------------~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  155 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRA-----------------AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-  155 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHH-----------------cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-
Confidence            46777777666667777766                 48999999887665442  22234567888999999987764 


Q ss_pred             HHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382          104 ESELLHVMHDSDISMVLSTEDYREVLQN  131 (372)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~  131 (372)
                      .+.+...|++.++.+++..+.....+.+
T Consensus       156 ~~~~~~~i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       156 TEKQVQLIQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHHHHHHHHCCCEEEEcHHHHHHHHH
Confidence            4667889999999999998877655443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-36
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		9e-34
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-31
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-31
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-31
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		9e-14
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-13
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-13
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-13
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		4e-12
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-11
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		9e-11
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-09
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		3e-09
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		2e-08
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		2e-08
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-08
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-08
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		9e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-07
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-07
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-07
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-07
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		7e-07
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		1e-06
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		1e-06
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		9e-06
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-05
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-05
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-05
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-05
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-05
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-05
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		2e-05
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-05
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-05
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		3e-05
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-05
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		3e-05
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-05
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-05
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-05
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-04
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 149/301 (49%), Gaps = 33/301 (10%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+ + A P+ E    V+    +G  AVPL     + EL H++ DS  S+VL+  D     
Sbjct: 70  RVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--- 126
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
                        +PP         V  +++ A   DG    DPAL+VYTSGTTG PKG 
Sbjct: 127 -------------LPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGA 173
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           V   +++   +  L +AW++T  D  +  LPL HVHGL   +L PL  G +V  + +FS 
Sbjct: 174 VIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFST 233
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM 308
            G  +   +             T   GVPTMY R+ +   A D EL           RL+
Sbjct: 234 EGAARELNDG-----------ATMLFGVPTMYHRIAETLPA-DPELAKALAGA----RLL 277
Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSM 368
           + GS+ALP+   ++    TG R++ERYGMTE +M  S    G  +AGTVG PLPGV++ +
Sbjct: 278 VSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRL 337
Query: 369 I 369
           +
Sbjct: 338 V 338

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 137/302 (45%), Gaps = 20/302 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+K GA    + P    S        S+A     +  +D A I+YTSGTTG+ K
Sbjct: 112 DGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSK 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G   +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  +  F+PKF
Sbjct: 172 GAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                    R
Sbjct: 232 DPDKILDLXARA------------TVLXGVPTFYTRLLQS--------PRLTKETTGHXR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYG TE     SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 SM 368
            +
Sbjct: 332 RV 333

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV 
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV 
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV 
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 55/308 (17%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 68  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
           V+  + +++       PP        TV D     S AE++     ++PA+         
Sbjct: 128 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 174
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTG PKGVVHTH+S+ +         +    D+ L  LP+ HV  L   + + +
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
             G T+  MP+F    +W    E          E +     VP +  + R +  +  +D 
Sbjct: 235 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 283
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
                        R  + G + +P  +++ +     E + G+ L E  G    +++  + 
Sbjct: 284 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS-EDA 332
Query: 348 LRGARKAG 355
           LR A  AG
Sbjct: 333 LRKAGSAG 340

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 29/295 (9%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 54  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 113
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           V+  + +++    ++   +   S    +   +  E      G+D   I+YTSGTTG PKG
Sbjct: 114 VIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKG 173
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           VVHTH+S+ +         +    D+ L  LP+ HV  L   + + +  G T+  MP+F 
Sbjct: 174 VVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFD 232
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDTELQXXXXXXXKQL 305
              +W    E          E +     VP +  + R +  +  +D              
Sbjct: 233 ATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA----------PDF 272
Query: 306 RLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNPLRGARKAG 355
           R  + G + +P  +++ +     E + G+ L E  G    +++  + LR A  AG
Sbjct: 273 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS-EDALRKAGSAG 326

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 78  SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
           S EFV   LG    G I          +EL      S   ++++   Y E +++ A +S 
Sbjct: 84  SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 138 AKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK- 193
            K   +   P+     SE T  D+++A ++D    +D   + Y+SGTTG PKGV+ THK 
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVD-ISPDDVVALPYSSGTTGLPKGVMLTHKG 202
Query: 194 ---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---S 247
              S+  QV        + S D  L  LP+ H++ L + +L  L  GA +  MPKF   S
Sbjct: 203 LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262
Query: 248 VRGIWQRWRES 258
           + G+ ++++ S
Sbjct: 263 LLGLIEKYKVS 273

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 20/201 (9%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFN 228
           +D A  +Y+SG+TGKPKG VHTH ++    ++  +        D       L   +GL N
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242
Query: 229 ALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
            L  PL  GAT   M  + +   I+ R  E  P          T F GVPT+Y  ++   
Sbjct: 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRP----------TVFYGVPTLYANMLVS- 291
Query: 288 EAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
                            +R+      ALP  + +++    G  +L+  G TE +    + 
Sbjct: 292 -------PNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN 344
Query: 348 LRGARKAGTVGNPLPGVQVSM 368
             GA + GT G P+PG ++ +
Sbjct: 345 RAGAVEYGTTGRPVPGYEIEL 365

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 12/176 (6%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP--ESELL----HVMHDSDISMVLS 121
           G R+ ++  P    +   LG  ++GCIAVP+   YP  + +LL     ++ +S   +VL 
Sbjct: 65  GDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLX 121
Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
             D+ +        +  KF  IP +   + E+   ++S + +    +  D A + YTSG+
Sbjct: 122 IADHIKKFTADELNTNPKFLKIPAI---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           T  PKGV  +H ++   +  +  ++           LP HH  GL   +L P+Y G
Sbjct: 179 TXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGG 234

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
            G G+ + +  K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++
Sbjct: 511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE 570
Query: 125 YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
            +E    +       F           + T F++  ++        DPA I+YTSGTTGK
Sbjct: 571 MKEQAAELPYTGTTLFI---------DDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGK 621
Query: 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFL 215
           PKG + TH +I   V+ + +   ++  D FL
Sbjct: 622 PKGNITTHANIQGLVKHV-DYMAFSDQDTFL 651

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK 139
           EFV   L   F G  A      +  +E+      S+  ++++   Y + ++ + +  G  
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV 184
Query: 140 FSLIP-----PVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYTSGTTGKPKGVV 189
              I      P+P      T   QS  E  +         +D   + Y+SGTTG PKGV+
Sbjct: 185 IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 190 HTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
            THK    S+  QV        + S D  L  LP+ H++ L + +L  L  GA +  MPK
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK 304
Query: 246 FSVR 249
           F + 
Sbjct: 305 FEIN 308

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ I+++   E +  +      G I +P+       E+  V+ D   S+V++  DYR+
Sbjct: 56  GDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRD 115
Query: 128 VLQNV-ASKSGAKFSL--------IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT 178
           ++  V  S  G K +           P  +++S+T  F   +    DG       +I++T
Sbjct: 116 IVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP-FSAPEFGAADG------FVIIHT 168
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +   G+P+G + +  ++      L +AW  T AD  L  LPL HV GL   L      GA
Sbjct: 169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228
Query: 239 TV---EFMPKFSVRGI 251
           +V   +F P  + R I
Sbjct: 229 SVIAAKFDPAQAARDI 244

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +GI+ + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +  
Sbjct: 87  GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHL 146
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG------QRGEDPALIVYTS 179
             ++ N+                 + +  +F++   +  +G       +  D A ++YTS
Sbjct: 147 VHLIHNI---------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 191
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF 214
           GTTG PKG +  HK I         +   T  D+ 
Sbjct: 192 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRI 226

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLS 121
           G  G R+ I A    E+V   LG   +G IAVPL++      +     V+ DS    +L+
Sbjct: 79  GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILT 138
Query: 122 TED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIVYT 178
           T     +V+Q+VA + G         P    E  + D         +  E P  A + YT
Sbjct: 139 TSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYT 191
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNALL 231
           SG+T  P GVV +H+++    + L   + +   D         +  LP +H  GL   + 
Sbjct: 192 SGSTRTPAGVVXSHQNVRVNFEQLXSGY-FADTDGIPPPNSALVSWLPFYHDXGLVIGIC 250
Query: 232 APLYAG 237
           AP+  G
Sbjct: 251 APILGG 256

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 64  AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVL 120
            G  G R+ I A    E+V   LG   +G IAVPL++      +     V+ DS    +L
Sbjct: 78  CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAIL 137
Query: 121 STED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIVY 177
           +T     +V+Q+VA + G         P    E  + D         +  E P  A + Y
Sbjct: 138 TTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQY 190
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNAL 230
           TSG+T  P GVV +H+++    + L   + +   D         +  LP +H  GL   +
Sbjct: 191 TSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI 249
Query: 231 LAPLYAG 237
            AP+  G
Sbjct: 250 CAPILGG 256

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 130/326 (39%), Gaps = 50/326 (15%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 82  RIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 142 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H+++  +    + A +    +Q       L  +P HH  G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRALAVR---FSHARDPIFGNQIAPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           F   L  L +G  V  M +F    ++ R  + Y +        + +F    T    LI  
Sbjct: 255 FTT-LGYLISGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFLAKST----LIDK 308
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           Y+  +  E+        K++   +     LP           G R  + YG+TE   AI 
Sbjct: 309 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 355
Query: 346 NPLRGARKAGTVGNPLPGVQVSMILL 371
              +G  K G VG  +P  +  ++ L
Sbjct: 356 ITPKGDDKPGAVGKVVPFFEAKVVDL 381

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 47/200 (23%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVL 120
           G R+ ++A+ S EFV       ++G +AVPLA+           ++L  ++     + ++
Sbjct: 73  GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQPAAII 132
Query: 121 STEDYREVLQNVASK--------SGAKFSLIP--------PVPNVSSETTVFDQSQAEKM 164
           + +++  ++ N A+         S A F  +P        PVPN                
Sbjct: 133 TGDEWLPLV-NAATHDNPELHVLSHAWFKALPEADVALQRPVPN---------------- 175
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHV 223
                 D A + YTSG+T  P+GV+ TH+ + A ++ ++ +  +    D+ +  LP +H 
Sbjct: 176 ------DIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHD 229
Query: 224 HGLFNALLAPLYAGATVEFM 243
            GL   LL P+    +V+++
Sbjct: 230 XGLVGFLLTPVATQLSVDYL 249

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G  +G+    S ++V  +   W      VP+   Y   EL H+++DS+ + ++      E
Sbjct: 77  GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 128 VLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
             + V  K+G  +  ++    N  SE         E +     ED ALI YT GTTG PK
Sbjct: 137 NFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPK 196
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
           GV  TH ++ A    L  A   +  D  + C P  H
Sbjct: 197 GVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFH 232

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 156 FDQSQAEKMDGQRGEDPAL--IVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSA 211
           ++++  E+ D  R  + A   + YT+GTTG PKGVV++H++  + +    L +    +  
Sbjct: 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT 271
           D  L  +P+ HV+       A L     V   P+     + + +           GE +T
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD----------GEGVT 269
Query: 272 AFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRL 331
              GVPT++  L    E+    L        K LR ++ G SA P  ++ ++E + G  +
Sbjct: 270 FTAGVPTVWLALADYLESTGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEV 320
Query: 332 LERYGMTE 339
            + YG+TE
Sbjct: 321 RQGYGLTE 328

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 136/343 (39%), Gaps = 44/343 (12%)
Query: 46  NDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE 104
            DLK  S+K  N    V  G G G  + +  K  ++F   +LG    G IAVP       
Sbjct: 90  KDLKYYSDKAAN--FFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 105 SELLHVMHDSDISMV--LSTEDYREVLQNVASKSG------AKFS------LIPPVPNVS 150
            ++++ +  + + M+  ++ +D  E +    ++ G      AK         I     + 
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELE 207
Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
             + +F++   E     + ED  L+ ++SGT G PK V H +      +  LT  +    
Sbjct: 208 ESSPIFERPTGEV--STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI--LTAKYWQNV 263
Query: 211 ADQFLHCLPLHHVHG--LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRA 266
            D  LH        G  ++  L     AG  V      +F  + + ++         ++ 
Sbjct: 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK--------ASKY 315
Query: 267 GEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETI 326
           G  +T F   PT+Y  LI+         +         L+  +     L   V  ++   
Sbjct: 316 G--VTTFCAPPTIYRFLIK---------EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364
Query: 327 TGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           TG +L+E +G TE V+ I+       K G++G P PG ++ ++
Sbjct: 365 TGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELM 407

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 60/331 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 137 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
           F   L  L  G  V  M +F    ++ R  + Y          I +   VPT++     +
Sbjct: 250 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 298
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 345
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVSMILL 371
             AI     G  K G VG  +P  +  ++ L
Sbjct: 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDL 376

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 60/331 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 82  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 142 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
           F   L  L  G  V  M +F    ++ R  + Y          I +   VPT++     +
Sbjct: 255 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 303
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 304 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 350
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVSMILL 371
             AI     G  K G VG  +P  +  ++ L
Sbjct: 351 TSAILITPEGDDKPGAVGKVVPFFEAKVVDL 381

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 60/331 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 137 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
           F   L  L  G  V  M +F    ++ R  + Y          I +   VPT++     +
Sbjct: 250 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 298
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 345
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVSMILL 371
             AI     G  K G VG  +P  +  ++ L
Sbjct: 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDL 376

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 45/280 (16%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYR 126
           G R+ +   P  E +  +L     G   VP+ L  P S    ++ DS  S ++    +  
Sbjct: 85  GDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGC 144
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
            V + V + + A+     P P   +              G   ED A ++YTSGTTG PK
Sbjct: 145 AVTRVVRTAAVAECKDAEPGPVTGAP-------------GPGAEDMAYVIYTSGTTGNPK 191
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFL--HCLPLH----HVHGLFNALLAPLYAGATV 240
           GV   H ++ A +      ++++  D++L  H L        + G F+        GA +
Sbjct: 192 GVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFS-------TGAEL 244
Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXX 300
             +P ++ R   Q       V  +R    +T     PT +  L        TE       
Sbjct: 245 VVLPHWAARTPEQ----YLAVIIDR---GVTVINQTPTAFLAL--------TEAAVRGGR 289
Query: 301 XXKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGM 337
               LR ++ G   L  P+++ W    G    RL+  YG+
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGI 329

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 58/316 (18%)
Query: 47  DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
           +L   S++  N    VL+G CG     R+ +V     E+   +LG   +G I +P  +  
Sbjct: 78  ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE 162
             +++L+ +  S    +++ ++  + +  VAS+           P++  +  V ++S   
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE----------CPSLRIKLLVSEKSCDG 183
Query: 163 KMDGQR---------------GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE 207
            ++ ++                ++ + I +TSGT+G PK   H++ S+  + +M    W 
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWT 242
Query: 208 YTSADQFLHCLP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGN 264
              A   +  +     +  +  +L+ P   GA   V  +PKF    I +    SYP    
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---- 297
Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQW 323
                I +  G P +Y  L+Q         Q         L+  +  G S LP   ++ W
Sbjct: 298 -----IKSMMGAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENW 342
Query: 324 ETITGHRLLERYGMTE 339
              TG  + E YG TE
Sbjct: 343 RAQTGLDIRESYGQTE 358

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 58/316 (18%)
Query: 47  DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
           +L   S++  N    VL+G CG     R+ +V     E+   +LG   +G I +P  +  
Sbjct: 78  ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE 162
             +++L+ +  S    +++ ++  + +  VAS+           P++  +  V ++S   
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE----------CPSLRIKLLVSEKSCDG 183
Query: 163 KMDGQR---------------GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE 207
            ++ ++                ++ + I +TSGT+G PK   H++ S+  + +M    W 
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWT 242
Query: 208 YTSADQFLHCLP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGN 264
              A   +  +     +  +  +L+ P   GA   V  +PKF    I +    SYP    
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---- 297
Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQW 323
                I +  G P +Y  L+Q         Q         L+  +  G S LP   ++ W
Sbjct: 298 -----IKSMMGAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENW 342
Query: 324 ETITGHRLLERYGMTE 339
              TG  + E YG TE
Sbjct: 343 RAQTGLDIRESYGQTE 358

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 31/223 (13%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL-PVMQQ--WETITGHR 330
           T +  +     +  E  D             LR++  GS+  P+ P   +  W+ I   +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRIL--GSAGEPINPEAWEWYWKKIGKEK 406
Query: 331 --LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
             +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 407 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
           +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
           +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
           +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
           +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
           +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
           +++ +  TE    +  PL GA   KAG+   P  GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
           +R+G+    S + +  +   W +      +      +E+ + M   D+ ++  T      
Sbjct: 49  SRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 129 LQNVASKSGAKFSLIPPVPN------------VSSETTVFDQSQAEKMDGQRG-EDPALI 175
              + S    +F+      N             S+ET V  +S +  ++     +D A I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
           ++TSGTTG  K V  T ++  A      E+  +     +L  LP++H+ GL + LL  + 
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVI 227
Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
            G TV  + KF+   I    +           E IT  + VP     L+Q
Sbjct: 228 EGFTVRIVDKFNAEQILTMIK----------NERITHISLVPQTLNWLMQ 267

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 126/328 (38%), Gaps = 52/328 (15%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++   + 
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
           +  V        +++     V        +T +       F  S  + ++  R E  ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGLFNA 229
           + +SG+TG PKGV  TH++I   V   + A +    +Q       L  +P HH  G+F  
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
            L  L  G  V  + KF      +  ++             T+   VPT++     + L+
Sbjct: 255 -LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
             Y+  +  E+        K++   +     LP           G R  + YG+TE   A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVSMILL 371
           I     G  K G  G  +P  +  +I L
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDL 378

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 126/328 (38%), Gaps = 52/328 (15%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++   + 
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
           +  V        +++     V        +T +       F  S  + ++  R E  ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGLFNA 229
           + +SG+TG PKGV  TH++I   V   + A +    +Q       L  +P HH  G+F  
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
            L  L  G  V  + KF      +  ++             T+   VPT++     + L+
Sbjct: 255 -LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
             Y+  +  E+        K++   +     LP           G R  + YG+TE   A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVSMILL 371
           I     G  K G  G  +P  +  +I L
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDL 378

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVIEEF 231

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 81/213 (38%), Gaps = 53/213 (24%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE----- 123
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++     
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 124 ---------------------DYR--EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160
                                DYR  + L     ++       PP    SS  TV     
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN------TPPGYQASSFKTV----- 186
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------F 214
               +  R E  ALI+ +SG+TG PKGV  TH++I   V   + A +    +Q       
Sbjct: 187 ----EVDRKEQVALIMNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAV 239
Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           L  +P HH  G+F   L  L  G  V  + KF 
Sbjct: 240 LTVVPFHHGFGMFTT-LGYLICGFRVVMLTKFD 271

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 32/220 (14%)
Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    I + ++ S +F   V G  F G    P    Y E EL + +  S  ++V  ++  
Sbjct: 107 GLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRA 166
Query: 126 REVLQNVASKSGAKFSLIPPVPNV----SSETTVFDQSQAEKMDGQ-------------- 167
            + +  V  K       +P +  +    S E  +  QS    ++                
Sbjct: 167 LQKILGVQKK-------LPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDS 219
Query: 168 --RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHH 222
             R    ALI+ +SG+TG PKGV  THK+I  +     +     +       L  +P HH
Sbjct: 220 FDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHH 279
Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVN 262
             G+F   L  L  G  +  M +F    ++ R  + Y + 
Sbjct: 280 GFGMFTT-LGYLTCGFRIVLMYRFEEE-LFLRSLQDYKIQ 317

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNA 229
           PA I YTSGTTG PK  +   ++ +++V   +      +   +  L   PL+HV G F  
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAV 214
Query: 230 LLAPLYAGATVEFMPKF 246
           L+A L    T   + +F
Sbjct: 215 LVAALALDGTYVVVEEF 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-108
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-90
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-72
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-66
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-65
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-64
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-62
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	5e-60
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-58
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-53
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-53
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	8e-52
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-51
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-50
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-46
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-40
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-38
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-35
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-34
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-29
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	3e-28
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-25
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	6e-25
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-24
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-24
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	7e-24
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-23
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-22
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	4e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-09
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	5e-09
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-07
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	9e-07
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-06

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  326 bits (837), Expect = e-108
 Identities = 110/351 (31%), Positives = 162/351 (46%), Gaps = 53/351 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+R  ++S +Y +LA++A   +  +                      G   R+ + A
Sbjct: 38  DRPALRFGERSLTYAELAAAAGATAGRI----------------------GGAGRVAVWA 75

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
            P+ E    V+    +G  AVPL     + EL H++ DS  S+VL+  D           
Sbjct: 76  TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD----------- 124

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                 L P +  +           A   DG    DPAL+VYTSGTTG PKG V   +++
Sbjct: 125 ----AELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRAL 180

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
              +  L +AW++T  D  +  LPL HVHGL   +L PL  G +V  + +FS  G  +  
Sbjct: 181 ATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL 240

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
            +             T   GVPTMY R+ +   A     +A +       RL++ GS+AL
Sbjct: 241 NDG-----------ATMLFGVPTMYHRIAETLPADPELAKALAG-----ARLLVSGSAAL 284

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           P+   ++    TG R++ERYGMTE +M  S    G  +AGTVG PLPGV++
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVEL 335

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  279 bits (717), Expect = 2e-90
 Identities = 106/353 (30%), Positives = 159/353 (45%), Gaps = 38/353 (10%)

Query: 15  RDSVAIR-ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
              +AI  A     SY +L + A R++++L +  L+                  G R+  
Sbjct: 16  PHKLAIETAAGDKISYAELVARAGRVANVLVARGLQV-----------------GDRVAA 58

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
             + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R+ +  +A
Sbjct: 59  QTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIA 118

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +K GA    + P    S        S+A     +  +D A I+YTSGTTG+ KG + +H 
Sbjct: 119 AKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHD 178

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+PKF    I  
Sbjct: 179 NLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD 238

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                            T   GVPT YTRL+Q                   +RL + GS+
Sbjct: 239 LM------------ARATVLMGVPTFYTRLLQSPRLTKETTGH--------MRLFISGSA 278

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
            L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  231 bits (591), Expect = 8e-72
 Identities = 70/366 (19%), Positives = 128/366 (34%), Gaps = 58/366 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
             +AI   Q+SY+Y  L   A  ++                      L     +R+G+  
Sbjct: 16  HHIAITDGQESYTYQNLYCEASLLA--------------------KRLKAYQQSRVGLYI 55

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S + +  +   W +      +      +E+ + M   D+ ++  T         + S 
Sbjct: 56  DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL 115

Query: 136 SGAKF---SLIPPVPNVSSETTVFDQSQAEKMDGQR----------GEDPALIVYTSGTT 182
              +F    +       ++    +D S    +  +            +D A I++TSGTT
Sbjct: 116 DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT 175

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
           G  K V  T ++  A      E+  +     +L  LP++H+ GL + LL  +  G TV  
Sbjct: 176 GPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRI 234

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
           + KF+   I    +           E IT  + VP     L+Q       +      +  
Sbjct: 235 VDKFNAEQILTMIKN----------ERITHISLVPQTLNWLMQ-------QGLHEPYN-- 275

Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNP 360
             L+ ++ G + L   +++         +   +GMTE       + P     +  TVG P
Sbjct: 276 --LQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332

Query: 361 LPGVQV 366
              V V
Sbjct: 333 SANVDV 338

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  217 bits (554), Expect = 3e-66
 Identities = 73/355 (20%), Positives = 132/355 (37%), Gaps = 41/355 (11%)

Query: 16  DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
              A    +     +Y Q+ + A R + +L +  +                   G R+ +
Sbjct: 31  RLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAK-----------------GDRVAL 73

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           +   S EF     G    G +AVP+       E+  ++ DS   +V+       V+  + 
Sbjct: 74  LMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIR 133

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +++    ++   +   S    +   +  E      G+D   I+YTSGTTG PKGVVHTH+
Sbjct: 134 AQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           S+ +         +    D+ L  LP+ HV  L   ++     G T+  MP+F    +W 
Sbjct: 194 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLISMPQFDATKVWS 252

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
              E          E +     VP +   + Q  E  + +            R  + G +
Sbjct: 253 LIVE----------ERVCIGGAVPAILNFMRQVPEFAELDAPD--------FRYFITGGA 294

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQV 366
            +P  +++ +       +++ Y +TE      +       RKAG+ G       V
Sbjct: 295 PMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDV 348

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  215 bits (550), Expect = 2e-65
 Identities = 79/362 (21%), Positives = 134/362 (37%), Gaps = 47/362 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
              A   D  S +Y +L   A R +S L +  +                     RI +V 
Sbjct: 38  GKTAYIDDTGSTTYGELEERARRFASALRTLGVH-----------------PEERILLVM 80

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +       LG  ++G + V        ++ ++++  S    V+++    + +      
Sbjct: 81  LDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES 140

Query: 136 SGAKFSLI--------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           +      +         P      E  +   + A K      +D A  +Y+SG+TGKPKG
Sbjct: 141 AEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKG 200

Query: 188 VVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-K 245
            VHTH ++    ++  +        D       L   +GL N L  PL  GAT   M  +
Sbjct: 201 TVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER 260

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
            +   I+ R  E             T F GVPT+Y  ++           A        +
Sbjct: 261 PTADAIFARLVE----------HRPTVFYGVPTLYANMLVSPNLPARADVA--------I 302

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPLPGV 364
           R+      ALP  + +++    G  +L+  G TE +   +SN   GA + GT G P+PG 
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGY 361

Query: 365 QV 366
           ++
Sbjct: 362 EI 363

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  212 bits (543), Expect = 1e-64
 Identities = 64/353 (18%), Positives = 114/353 (32%), Gaps = 43/353 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A   D    ++    + A R++S L  + + T                 G R+ I++
Sbjct: 21  DRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHT-----------------GDRVAILS 63

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           +   E +  +      G I +P+       E+  V+ D   S+V++  DYR+++  V   
Sbjct: 64  QNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS 123

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHTHK 193
            G                   D +             D  +I++T+   G+P+G + +  
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQG 183

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++      L +AW  T AD  L  LPL HV GL   +L    AG       KF      +
Sbjct: 184 NLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVIAAKFDPAQAAR 242

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                           +T       M   +          L  A+ +    LR +    +
Sbjct: 243 DIEA----------HKVTVMAEFAPMLGNI----------LDQAAPAQLASLRAVTGLDT 282

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
              +   +   T         +G +E     +       +  + G PL    V
Sbjct: 283 PETIERFE--ATCPNATFWATFGQSETSGLSTF-APYRDRPKSAGRPLFWRTV 332

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  207 bits (528), Expect = 4e-62
 Identities = 67/363 (18%), Positives = 135/363 (37%), Gaps = 49/363 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           +        +S ++ ++     +++S +    ++                  G  +G+  
Sbjct: 42  EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRK-----------------GEHVGVCI 84

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S ++V  +   W      VP+   Y   EL H+++DS+ + ++      E  + V  K
Sbjct: 85  PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK 144

Query: 136 SGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
           +G +   +      S SE         E +     ED ALI YT GTTG PKGV+ TH +
Sbjct: 145 TGVERVFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFN 204

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI--- 251
           + A    L  A   +  D  + C+P+ H       +   +  G     M  F+   +   
Sbjct: 205 LAANALQLAVATGLSHMDTIVGCMPMFHSAEF-GLVNLMVTVGNEYVVMGMFNQEMLAEN 263

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            ++++              T    VP     L+   E+ +     +       L++   G
Sbjct: 264 IEKYK-------------GTFSWAVPPALNVLVNTLESSNKTYDWSY------LKVFATG 304

Query: 312 SSALPLPVMQQWETITGHR-------LLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPG 363
           +  +   ++++   +   +         + +GMTE    ++ NP     K+ T G P+  
Sbjct: 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSD 364

Query: 364 VQV 366
           +++
Sbjct: 365 IEL 367

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  200 bits (512), Expect = 5e-60
 Identities = 66/356 (18%), Positives = 128/356 (35%), Gaps = 45/356 (12%)

Query: 16  DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           D  A+   A     ++ +L +    +++ L ++ L+                    R+ +
Sbjct: 17  DHCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAV 59

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           VA  S + V  +L     G +   L      +EL  ++   +++  +     +       
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           S SGA+   +  +     +   +      +   +    PA I YTSGTTG PK  +   +
Sbjct: 120 SGSGARIIFLGDLV---RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQR 176

Query: 194 SIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
           + +++V  ++      +   +  L  +PL+HV G F  L+A L    T   + +F     
Sbjct: 177 AAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA 236

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            Q  ++          E +T+    PT    L        + L+  S      LR +   
Sbjct: 237 LQLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFA 280

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQV 366
            + +P  V++          +  YG TE + ++         K GT   P    +V
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ----PKTGTEMAPGFFSEV 332

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  199 bits (509), Expect = 1e-58
 Identities = 62/363 (17%), Positives = 120/363 (33%), Gaps = 43/363 (11%)

Query: 14  ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           A DS+A+   ++  SY +L  +A  ++  L    +K                  G    +
Sbjct: 38  ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKP-----------------GETALV 80

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREV 128
                 E           G   V    S+  SEL       + +++++          + 
Sbjct: 81  QLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF 140

Query: 129 LQNVASKSGA--KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           L    ++  +     L+      + +  +   ++         ++ A    + GTTG PK
Sbjct: 141 LNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPK 200

Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA-LLAPLYAGATVEFMPK 245
            +  TH      V+   E  ++T   ++L  +P  H + + +   L    AG TV     
Sbjct: 201 LIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
            S    +    +            +     VP   +  +Q     ++  Q AS      L
Sbjct: 261 PSATLCFPLIEK----------HQVNVTALVPPAVSLWLQALIEGESRAQLAS------L 304

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPL-PG 363
           +L+  G + L   +  +     G +L + +GM E  V          +   T G P+ P 
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD 364

Query: 364 VQV 366
            +V
Sbjct: 365 DEV 367

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  183 bits (466), Expect = 3e-53
 Identities = 74/381 (19%), Positives = 134/381 (35%), Gaps = 59/381 (15%)

Query: 3   VFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           V +              +   A+   Y+Y  +  +A R++S L    ++           
Sbjct: 28  VLENLSNHS----SKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQ---------- 73

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  G  I +    S EFV   LG    G I          +EL      S   +++
Sbjct: 74  -------GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLI 126

Query: 121 STEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQAEKMDGQRG-EDPALIVYT 178
           +   Y E +++ A +S  K   +          + +    + E        +D   + Y+
Sbjct: 127 TQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYS 186

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPL 234
           SGTTG PKGV+ THK +   V    +       + S D  L  LP+ H++ L + +L  L
Sbjct: 187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246

Query: 235 YAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             GA +  MPKF +  +    ++++             ++    VP +   + +  +   
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYK-------------VSIAPVVPPVMMSIAKSPDLDK 293

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWE-TITGHRLLERYGMTE-----FVMAIS 345
            +L +        LR++  G + L   +           RL + YGMTE      +    
Sbjct: 294 HDLSS--------LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF 345

Query: 346 NPLRGARKAGTVGNPLPGVQV 366
                  K G  G  +   ++
Sbjct: 346 AKEPFDIKPGACGTVVRNAEM 366

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  183 bits (467), Expect = 4e-53
 Identities = 78/387 (20%), Positives = 137/387 (35%), Gaps = 61/387 (15%)

Query: 2   EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
           E    A K+ ++   ++A      + + +Y +    ++R++  +    L T         
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 74

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                     RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V
Sbjct: 75  --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126

Query: 120 LSTEDYREVLQNVASKSGAKFSLI--------PPVPNV-----SSETTVFDQSQAEKMDG 166
             ++   + + NV  K      +I            ++     S     F++        
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 186

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHV 223
            R +  ALI+ +SG+TG PKGV   H++   +     +     +       L  +P HH 
Sbjct: 187 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246

Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMY 280
            G+    L  L  G  V  M +F         Q ++             I +   VPT++
Sbjct: 247 FGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYK-------------IQSALLVPTLF 292

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE 339
           +   +       +L          L  +  G + L   V +          + + YG+TE
Sbjct: 293 SFFAKSTLIDKYDLSN--------LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344

Query: 340 FVMAISNPLRGARKAGTVGNPLPGVQV 366
              AI     G  K G VG  +P  + 
Sbjct: 345 TTSAILITPEGDDKPGAVGKVVPFFEA 371

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  179 bits (457), Expect = 8e-52
 Identities = 72/363 (19%), Positives = 125/363 (34%), Gaps = 61/363 (16%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
             YSY +    +  +   L +  L                     RI + ++   EF   
Sbjct: 51  VDYSYAEYLEKSCCLGKALQNYGLVV-----------------DGRIALCSENCEEFFIP 93

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI- 143
           V+   F G    P    Y   EL+H +  S  ++V S++   + +  V        +++ 
Sbjct: 94  VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVI 153

Query: 144 -------PPVPNVSS-----ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
                       + +         F  S  + ++  R E  ALI+ +SG+TG PKGV  T
Sbjct: 154 LDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLT 213

Query: 192 HKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           H++I  +     +     + +     L  +P HH  G+    L  L  G  V  + KF  
Sbjct: 214 HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDE 272

Query: 249 ----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
               + + Q ++              T+   VPT++  L +       +L          
Sbjct: 273 ETFLKTL-QDYK-------------CTSVILVPTLFAILNKSELLNKYDLSN-------- 310

Query: 305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPG 363
           L  +  G + L   V +          + + YG+TE   AI     G  K G  G  +P 
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPL 370

Query: 364 VQV 366
            + 
Sbjct: 371 FKA 373

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  178 bits (455), Expect = 1e-51
 Identities = 54/360 (15%), Positives = 112/360 (31%), Gaps = 46/360 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            S+AI   ++  SY +L   +  +++ L    L                   G    +  
Sbjct: 45  HSLAIICGERQLSYIELDRLSTNLATRLAEKGLGK-----------------GDTALVQL 87

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
               EF         +G + +    S+ + EL   +      +++ +         + + 
Sbjct: 88  PNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFID 147

Query: 131 NVASKSGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           ++   + +   ++            +                 ++ A    + G+TG PK
Sbjct: 148 SLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPK 207

Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEFMPK 245
            +  TH   D  V+   E     S  + L  LP  H   L     L  L+AG  V   P 
Sbjct: 208 LIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
                 +   +             +   + VP+     ++       ++Q+        L
Sbjct: 268 PEPLNCFSIIQR----------HQVNMASLVPSAVIMWLEKAAQYKDQIQS--------L 309

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPLPGV 364
           +L+  G ++ P  + +Q   +   +L + +GM E  V          +   T G P+   
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  175 bits (446), Expect = 3e-50
 Identities = 65/366 (17%), Positives = 125/366 (34%), Gaps = 57/366 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +AI      +SY +L + A R+++      ++                    R+ +  
Sbjct: 40  DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
               EF   +   +  G + V    S+  SE+ +    ++ +  +  +     DYR + +
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 131 NVASKSGAKFSLIPPVPNV-----SSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTG 183
            V SK       +P + N+     + E    +    E +        D A +  + G+TG
Sbjct: 143 QVQSK-------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTG 195

Query: 184 KPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF 242
             K +  TH      ++   E      +  +L  LP+ H + L    +L  LYAG  V  
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
            P  S    +               E +T    VP +    +    +   +L +      
Sbjct: 256 SPSPSPDDAFPLIER----------EKVTITALVPPLAMVWMDAASSRRDDLSS------ 299

Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPL 361
             L+++  G +       ++ + + G  L + +GM E  V              T G P+
Sbjct: 300 --LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357

Query: 362 -PGVQV 366
            P  + 
Sbjct: 358 SPYDES 363

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  168 bits (427), Expect = 3e-46
 Identities = 68/390 (17%), Positives = 132/390 (33%), Gaps = 69/390 (17%)

Query: 3   VFKAAYKKGSMARDSVAI--RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           +F+   +          +        Y+Y  +   + +I++      +            
Sbjct: 67  IFQNISEFA----TKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQ---------- 112

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                     + ++     EFV   L   F G  A      +  +E+      S+  +++
Sbjct: 113 -------NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLII 165

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV--FDQSQAEKMDGQRG--------E 170
           +   Y + ++ + +  G     I    +V        F +      +            +
Sbjct: 166 TEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPD 225

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGL 226
           D   + Y+SGTTG PKGV+ THK +   V    +       + S D  L  LP+ H++ L
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285

Query: 227 FNALLAPLYAGATVEFMPKFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
            + +L  L  GA +  MPKF +      I QR +             +T    VP +   
Sbjct: 286 NSIMLCGLRVGAAILIMPKFEINLLLELI-QRCK-------------VTVAPMVPPIVLA 331

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE-- 339
           + +  E    +L +        +R++  G++ L   +           +L + YGMTE  
Sbjct: 332 IAKSSETEKYDLSS--------IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383

Query: 340 ---FVMAISNPLRGARKAGTVGNPLPGVQV 366
               +           K+G  G  +   ++
Sbjct: 384 PVLAMSLGFAKEPFPVKSGACGTVVRNAEM 413

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  149 bits (379), Expect = 1e-40
 Identities = 70/384 (18%), Positives = 143/384 (37%), Gaps = 63/384 (16%)

Query: 6   AAYKKGSMARDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           A  +K      S A+        +  +++ +L+ ++ + +                    
Sbjct: 48  ADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAA-------------------- 87

Query: 61  AVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
            VL+G CG     R+ +V     E+   +LG   +G I +P  +    +++L+ +  S  
Sbjct: 88  NVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA 147

Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--------- 167
             +++ ++  + +  VAS+  +    +     VS ++     +  + ++           
Sbjct: 148 KAIVAGDEVIQEVDTVASECPS----LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVET 203

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
             ++ + I +TSGT+G PK   H++ S+  + +M        ++D          +  + 
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263

Query: 228 NALLAPLYAGATVEF--MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
            +L+ P   GA      +PKF    I +    SYP+          +  G P +Y  L+Q
Sbjct: 264 CSLMEPWALGACTFVHLLPKFDPLVILKTL-SSYPI---------KSMMGAPIVYRMLLQ 313

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
                    Q  S+     L+  +    +L    ++ W   TG  + E YG TE  +   
Sbjct: 314 ---------QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364

Query: 346 NPLRGARKAGTVGNPLPGVQVSMI 369
                  K G +G       V +I
Sbjct: 365 VSKTMKIKPGYMGTAASCYDVQII 388

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  144 bits (366), Expect = 1e-38
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 23/222 (10%)

Query: 26  SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
           + +Y+QL   A  I++ L +   K                  G R+ ++  P    +   
Sbjct: 40  TMTYEQLDQHAKAIAATLQAEGAKP-----------------GDRVLLLFAPGLPLIQAF 82

Query: 86  LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
           LG  ++GCIAVP+     E        ++ +S   +VL   D+ +      +        
Sbjct: 83  LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---KFTADELNTNPK 139

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
              +P ++ E+   ++S + +    +  D A + YTSG+T  PKGV+ +H ++   +  +
Sbjct: 140 FLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKI 199

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
             ++           LP HH  GL   +L P+Y G     M 
Sbjct: 200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  134 bits (338), Expect = 2e-35
 Identities = 64/358 (17%), Positives = 108/358 (30%), Gaps = 80/358 (22%)

Query: 26  SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
           + ++ QL    L ++  L                     G  G R+ I A    E+V   
Sbjct: 58  TLTWSQLYRRTLNVAQELSR------------------CGSTGDRVVISAPQGLEYVVAF 99

Query: 86  LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
           LG   +G IAVPL++            V+ DS    +L+T    + +    ++   +   
Sbjct: 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE--- 156

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
             P   +  +    D               A + YTSG+T  P GVV +H+++    + L
Sbjct: 157 -SPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL 215

Query: 203 TEAWEYTS------ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR---GIWQ 253
              +   +          +  LP +H  GL   + AP+  G         S       W 
Sbjct: 216 MSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWM 275

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLM 308
               S             AF+  P         +E      +  +              +
Sbjct: 276 HLMASDFH----------AFSAAPNF------AFELA---ARRTTDDDMAGRDLGNILTI 316

Query: 309 MCGSSALPLPVMQQWETITGHRLLER--------------YGMTEFVMAISNPLRGAR 352
           + GS      V  Q  TI   R  +R              Y + E  + ++    G  
Sbjct: 317 LSGSE----RV--QAATI--KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQP 366

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  117 bits (295), Expect = 4e-29
 Identities = 67/390 (17%), Positives = 134/390 (34%), Gaps = 87/390 (22%)

Query: 15  RDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
            + +A+       ++K +++  L   + + ++    + +                   G 
Sbjct: 70  PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGK-----------------GD 112

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--- 126
            + +  K  ++F   +LG    G IAVP        ++++ +  + + M++   +     
Sbjct: 113 YVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPE 172

Query: 127 ---EVLQNVASKSGAKFSLIPPVPN---------VSSETTVFDQSQAEKMDGQRGEDPAL 174
              E           K  +   V             S       +          ED  L
Sbjct: 173 QVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKN---EDICL 229

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH---------- 224
           + ++SGT G PK V H +      +  +  A       ++   +    +H          
Sbjct: 230 VYFSSGTAGFPKMVEHDNT---YPLGHILTA-------KYWQNVEDDGLHYTVADSGWGK 279

Query: 225 GLFNALLAPLYAGATVEFM---PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
            ++  L     AG  V F+    +F  + + ++    Y V         T F   PT+Y 
Sbjct: 280 CVWGKLYGQWIAGCAV-FVYDYDRFEAKNMLEKA-SKYGV---------TTFCAPPTIYR 328

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-P-VMQQWETITGHRLLERYGMTE 339
            LI+         +  S      L+      +  PL P V  ++   TG +L+E +G TE
Sbjct: 329 FLIK---------EDLSHYNFSTLKY--AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTE 377

Query: 340 FVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
            V+ I+       K G++G P PG ++ ++
Sbjct: 378 TVVTIATFPWMEPKPGSIGKPTPGYKIELM 407

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  115 bits (290), Expect = 3e-28
 Identities = 73/364 (20%), Positives = 134/364 (36%), Gaps = 67/364 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           D+ A+    ++ SY +L   A RI+  L                     G G G+ + + 
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRLQK------------------HGAGKGSVVALY 520

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++ +E    +  
Sbjct: 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY 580

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                      +     + T F++  ++        DPA I+YTSGTTGKPKG + TH +
Sbjct: 581 T-------GTTL--FIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK---FS 247
           I   V+   +   ++  D FL           F+A      A +   A +    +     
Sbjct: 632 IQGLVKH-VDYMAFSDQDTFLSVSNYA-----FDAFTFDFYASMLNAARLIIADEHTLLD 685

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              +     +          E +        ++  L             A     K LR 
Sbjct: 686 TERLTDLILQ----------ENVNVMFATTALFNLLTD-----------AGEDWMKGLRC 724

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV---GNPLP 362
           ++ G     +P +++    +   +L+  YG TE  V A ++ +     + +    G P+ 
Sbjct: 725 ILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPIS 784

Query: 363 GVQV 366
              V
Sbjct: 785 NASV 788

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  106 bits (266), Expect = 2e-25
 Identities = 57/366 (15%), Positives = 122/366 (33%), Gaps = 66/366 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D        +  +Y QL   +  I++ + S  L                    + + +  
Sbjct: 19  DFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLA-----------------KSPVLVFG 61

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +++ +A  +    SG   +P+ +      +L ++  +  S++++ E++   ++ +   
Sbjct: 62  AQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--- 118

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                     V     E+    +   E+    +G+D   I++TSGTTG+PKGV  +H ++
Sbjct: 119 --------SLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170

Query: 196 DAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR 249
            +    + E   +      Q L   P       F+         L  G T+  +PK  V 
Sbjct: 171 LSFTNWMIEDAAFDVPKQPQMLAQPPYS-----FDLSVMYWAPTLALGGTLFALPKELVA 225

Query: 250 ---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306
               ++    +            +  +T  P+     +   +    ++ A        L 
Sbjct: 226 DFKQLFTTIAQ----------LPVGIWTSTPSFADMAMLSDDFCQAKMPA--------LT 267

Query: 307 LMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNP 360
                   L +   ++  E     +++  YG TE    + AI            +  G P
Sbjct: 268 HFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327

Query: 361 LPGVQV 366
            P    
Sbjct: 328 KPDSPT 333

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  105 bits (263), Expect = 6e-25
 Identities = 50/311 (16%), Positives = 94/311 (30%), Gaps = 47/311 (15%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            I +    S    A ++G   SG   VP+    P      ++ DS  +M    ++  + +
Sbjct: 81  AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV 140

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
           +           L     +     +  D S             A ++YTSG+TG PKGV 
Sbjct: 141 EL----PPETKVLDTKNQSFIENLSTQDTSDILN--NYPENLDAYLLYTSGSTGTPKGVR 194

Query: 190 HTHKSI--------DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAG 237
            +  ++             +  ++ E     +FL           F+     +      G
Sbjct: 195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA-----FDVHIGEMFLAWRFG 249

Query: 238 ATVEFMPKFSVR-GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
                  + S+   + + +RE            +T    VP++  +              
Sbjct: 250 LCAVTGERLSMLDDLPRTFRE----------LGVTHAGIVPSLLDQTGL----------- 288

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAG 355
                A  L  +  G   +     Q W +     L+  YG TE  +   +  +       
Sbjct: 289 -VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347

Query: 356 TVGNPLPGVQV 366
            +G+PL     
Sbjct: 348 CIGHPLGDSVA 358

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  103 bits (260), Expect = 2e-24
 Identities = 56/365 (15%), Positives = 124/365 (33%), Gaps = 65/365 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            + A R+  +S +Y +L   + R ++ +                   ++G   + I +  
Sbjct: 16  QTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYG 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                 +   LG+  +G   +P+ LS P   +  ++  S   +++               
Sbjct: 60  HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQ-- 117

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKGVVHTHKS 194
                     +  VS+E  + ++  +   D   +  +   I+YTSG+TG PKGV  +  +
Sbjct: 118 ----------IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAAN 167

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
           + +    +   +  +    FL+  P       F+     L   L +G T+  + K +V  
Sbjct: 168 LQSFTDWICADFPVSGGKIFLNQAPFS-----FDLSVMDLYPCLQSGGTLHCVTKDAVNK 222

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              +++  ++            +  +T  P+     +             S         
Sbjct: 223 PKVLFEELKK----------SGLNVWTSTPSFVQMCLM--------DPGFSQDLLPHADT 264

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNPL 361
            M     LP+ V +   E     ++   YG TE    V ++        ++ ++  G   
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAK 324

Query: 362 PGVQV 366
           P + +
Sbjct: 325 PDMNI 329

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score =  103 bits (259), Expect = 2e-24
 Identities = 58/363 (15%), Positives = 100/363 (27%), Gaps = 72/363 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
              AIR    S  Y QL  SA ++S  L                  +      G  +G+ 
Sbjct: 42  HREAIRDRFGSVDYRQLLDSAEQLSDYL------------------LEHYPQPGVCLGVY 83

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            + S E +  +L    SG   + + L  P +    +    D  ++L           +  
Sbjct: 84  GEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP- 142

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                               +     +        +  A I ++SGTTG+PK +  TH  
Sbjct: 143 --------------CVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAG 188

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK--FSV 248
           I            +    +FL   PL      F+A    +   L  G             
Sbjct: 189 ITRLCLG-QSFLAFAPQMRFLVNSPLS-----FDAATLEIWGALLNGGCCVLNDLGPLDP 242

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
             + Q   E              +     +++  L+                    LR +
Sbjct: 243 GVLRQLIGE----------RGADSAWLTASLFNTLVD-----------LDPDCLGGLRQL 281

Query: 309 MCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV---GNPLPG 363
           + G   L +P +++         L+  YG TE       + +            G  + G
Sbjct: 282 LTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAG 341

Query: 364 VQV 366
             V
Sbjct: 342 TAV 344

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  101 bits (255), Expect = 7e-24
 Identities = 65/368 (17%), Positives = 128/368 (34%), Gaps = 81/368 (22%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           ++VAI  + +  +Y +L   A +++ +                      G G    +GI+
Sbjct: 54  NNVAIVCENEQLTYHELNVKANQLARIFIEK------------------GIGKDTLVGIM 95

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +    ++     
Sbjct: 96  MEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI----- 150

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGV 188
                          + +  +F++   +  +G       +  D A ++YTSGTTG PKG 
Sbjct: 151 ----------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGT 200

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMP 244
           +  HK I         +   T  D+      +      F+A    +   L  GA++  + 
Sbjct: 201 MLEHKGISNLKVFFENSLNVTEKDRIGQFASIS-----FDASVWEMFMALLTGASLYIIL 255

Query: 245 K---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
           K          Q   +          + IT  T  PT               +       
Sbjct: 256 KDTINDFVKFEQYINQ----------KEITVITLPPTY--------------VVHLDPER 291

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV--G 358
              ++ ++   SA    ++ +W        +  YG TE  + A +          +V  G
Sbjct: 292 ILSIQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIG 349

Query: 359 NPLPGVQV 366
            P+   Q+
Sbjct: 350 APIQNTQI 357

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  101 bits (253), Expect = 1e-23
 Identities = 59/365 (16%), Positives = 113/365 (30%), Gaps = 64/365 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           D  A        +Y QL   +  ++  + S                        + I + 
Sbjct: 16  DQTAFVWRDAKITYKQLKEDSDALAHWISS------------------EYPDDRSPIMVY 57

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                E +   LG   +G   +P+ LS P   +  +  +S   ++LS          V  
Sbjct: 58  GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVR- 116

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                   I    N+         +        +G++   I+YTSG+TG PKGV  T+  
Sbjct: 117 --------IVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
           + +  +   E +   +   FL+  P       F+     +   L  G T+  + K  +  
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFS-----FDLSVMDIYPSLVTGGTLWAIDKDMIAR 223

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              ++    +            I  +T  P+     +           + S S    ++ 
Sbjct: 224 PKDLFASLEQ----------SDIQVWTSTPSFAEMCLM--------EASFSESMLPNMKT 265

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNPL 361
            +     LP  V ++  E      ++  YG TE    V  I        +  ++  G   
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325

Query: 362 PGVQV 366
              ++
Sbjct: 326 SDCRL 330

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 98.0 bits (245), Expect = 1e-22
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 21/171 (12%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
               + YT+GTTG PKGVV++H+++   +    L +    +  D  L  +P+ HV+    
Sbjct: 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 236

Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
              A L     V   P+     + + +            E +T   GVPT++  L    E
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDG----------EGVTFTAGVPTVWLALADYLE 286

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
           +    L        K LR ++ G SA P  ++ ++E + G  + + YG+TE
Sbjct: 287 STGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTE 328

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 86.7 bits (214), Expect = 4e-19
 Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 26/219 (11%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH- 221
           G   +    +  + GTTG PK VV     I+A +              +   L  +P   
Sbjct: 87  GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGP 146

Query: 222 HVHGLFNALLAPLYAGA--TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA---------I 270
           H+ G  N   A    G   +++  P++  R + +    +     +   +          I
Sbjct: 147 HIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDI 206

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW--ETITG 328
                 P +   L++  E +    Q+        L  +  G + L L  ++    E +  
Sbjct: 207 RFLVTTPPVLRELLKRPEVVLQMKQS--------LAQITLGGTELNLDEIKFIASEILPD 258

Query: 329 HRLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQV 366
                 YG T  + ++ S  +    +     +  P +  
Sbjct: 259 CEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITY 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 62/398 (15%), Positives = 121/398 (30%), Gaps = 102/398 (25%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           M   K   ++ SM      I    + Y+ +Q+ +    +S L     L+    + +   +
Sbjct: 95  MSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKN 152

Query: 61  AVLAG--GCG--------AR-IGIVAKPSFEFVAGVLGTWFS-GCIAVPLALSYPESELL 108
            ++ G  G G             +  K  F     +   W +      P  +     +LL
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIF--WLNLKNCNSPETVLEMLQKLL 206

Query: 109 HVM-------HDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-PNVSSETTV--FD- 157
           + +        D   ++ L     +  L+ +      +  L+  V  NV +      F+ 
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNL 264

Query: 158 QSQAEKMDGQRGEDPALIVYT--SGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQ 213
             +             +++ T     T        TH S+D     LT  E        +
Sbjct: 265 SCK-------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--K 309

Query: 214 FLHC----LP--LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG 267
           +L C    LP  +   +    +++A        E +        W  W+    VN ++  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIA--------ESIRDGLAT--WDNWKH---VNCDKLT 356

Query: 268 EAITAFTGV--PT----MYTRL--------------------IQGYEAMD--TELQAASA 299
             I +   V  P     M+ RL                    +   + M    +L   S 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITG-HR-LLERY 335
              KQ +       ++ L +  + E     HR +++ Y
Sbjct: 417 -VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
            + Q E M+    EDP  I+YTSG+TGKPKGV+HT 
Sbjct: 246 PEHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTT 278

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
              +D    EDP  ++YTSG+TG PKGV H+
Sbjct: 256 CTPVDS---EDPLFLLYTSGSTGAPKGVQHS 283

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 53/190 (27%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGL 226
           +  + I  +SGTTGKP  V +T   ID    ++  +         D+          +GL
Sbjct: 90  DRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG----YGL 145

Query: 227 FNALLAPLYA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAI 270
           F   L   Y     G TV            + +  F                        
Sbjct: 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRP---------------------- 183

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGH 329
                 P+    +    E    +   +S      LR+ + G+       M+   E   G 
Sbjct: 184 DIIMVTPSYMLSIADEIERQGLDPVQSS------LRIGIFGAEPWT-NDMRVAIEQRMGI 236

Query: 330 RLLERYGMTE 339
             ++ YG++E
Sbjct: 237 DAVDIYGLSE 246

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 53/182 (29%)

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
           +SGTTG P  +VH+   +D+   ++            D F +       +G+F   L   
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG----YGMFTGGLGFQ 149

Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           Y     G               +F+  F                        TA   +P+
Sbjct: 150 YGAERLGCLTVPAAAGNSKRQIKFISDFKT----------------------TALHAIPS 187

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
              RL + ++    + +  +      L+ ++ G+        ++  E +   +    +GM
Sbjct: 188 YAIRLAEVFQEEGIDPRETT------LKTLVIGAEPHT-DEQRRKIERMLNVKAYNSFGM 240

Query: 338 TE 339
           TE
Sbjct: 241 TE 242

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 53/182 (29%)

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
           +SGTTGKP  V +T + ID    +   +         D   +       +GLF   L   
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG----YGLFTGGLGIH 155

Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           Y     G  V            + +  F                              P+
Sbjct: 156 YGAERLGCMVVPMSGGQTEKQVQLIRDFEP----------------------KIILVTPS 193

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
               LI        +   +S      L++ + G+       ++   ET  G   L+ YG+
Sbjct: 194 YMLNLIDEMVRQGMDPAESS------LKIGIFGAEPWT-QALRNEVETRVGIDALDIYGL 246

Query: 338 TE 339
           +E
Sbjct: 247 SE 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.96
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.94
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.93
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.93
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	91.43
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	90.78
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	86.38
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	82.77
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	82.6
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	81.74
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	81.16
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	80.07

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.3e-52  Score=405.29  Aligned_cols=336  Identities=21%  Similarity=0.271  Sum_probs=281.6

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +|+++.|.++++++||++|+++.  ++++||+||.++++++|+.|++                 .|+++||+|+++++|+
T Consensus        22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~   84 (536)
T 3ni2_A           22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-----------------IGIQQGDVIMLFLPSS   84 (536)
T ss_dssp             CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred             CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCc
Confidence            57899999999999999999985  6899999999999999999999                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCC-CCccccc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFD  157 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  157 (372)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|++....+.+...........+.++...... .......
T Consensus        85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (536)
T 3ni2_A           85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ  164 (536)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred             HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence            999999999999999999999999999999999999999999999887777766554444444433211100 0000000


Q ss_pred             -ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382          158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (372)
Q Consensus       158 -~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~~~~  232 (372)
                       ...........++++++|+|||||||.||||+++|+++...+.....    .+.+.++|++++.+|++|..++...++.
T Consensus       165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  244 (536)
T 3ni2_A          165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC  244 (536)
T ss_dssp             SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred             ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence             11111233456799999999999999999999999999988776553    3467899999999999999999777888


Q ss_pred             HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...        ....+++++|.+++||
T Consensus       245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG  306 (536)
T 3ni2_A          245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG  306 (536)
T ss_dssp             HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred             HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence            9999999999999999999998          788999999999999999987632        2345789999999999


Q ss_pred             CCCCHHHHHHHHHHh-CCccccccccccccccccCC-----CCCCCCCCcccccCCCceEEEeec
Q 017382          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +++++++.+.|.+.| +++++|.||+||++.+++..     .....+.+++|+|++|++++|+|+
T Consensus       307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~  371 (536)
T 3ni2_A          307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDP  371 (536)
T ss_dssp             SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECT
T ss_pred             CCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeC
Confidence            999999999999999 89999999999998654321     223456789999999999999995

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.5e-51  Score=399.63  Aligned_cols=334  Identities=22%  Similarity=0.309  Sum_probs=275.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCc--eeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +|+.+.|.++++++|+++|+++.++  ++||+||.++++++|+.|++                 .|+++||+|+++++|+
T Consensus        16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~   78 (517)
T 3r44_A           16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-----------------LGIAKGDRVALLMPNS   78 (517)
T ss_dssp             GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred             cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEcCCC
Confidence            4789999999999999999998776  99999999999999999999                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcc-ccc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-VFD  157 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  157 (372)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|++....+.+.............+... ....... ...
T Consensus        79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  157 (517)
T 3r44_A           79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI-GADSLAERLRS  157 (517)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-EHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-CcccHHHHhhc
Confidence            99999999999999999999999999999999999999999999988877776654332111000000 0000000 000


Q ss_pred             ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcC
Q 017382          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (372)
Q Consensus       158 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G  237 (372)
                      ...........++++++|+|||||||.||||++||+++...+......+++..+|++++.+|++|..++...++. ++.|
T Consensus       158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~-~~~G  236 (517)
T 3r44_A          158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS-AMRG  236 (517)
T ss_dssp             CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHH-HHHT
T ss_pred             cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HhcC
Confidence            011112234567899999999999999999999999999999999999999999999999999999999754444 5599


Q ss_pred             ceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      +++++.+.+++..+++.          ++++++|++.++|+++..+.+.        +.....+++++|.+++||+++++
T Consensus       237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------~~~~~~~~~~lr~i~~gGe~l~~  298 (517)
T 3r44_A          237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQV--------PEFAELDAPDFRYFITGGAPMPE  298 (517)
T ss_dssp             CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHS--------HHHHHCCCTTCCEEEECSSCCCH
T ss_pred             eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhC--------cccccCCCCcccEEEECCCCCCH
Confidence            99999999999999999          7889999999999999999875        23345678999999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccC--CCCCCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~--~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.+.|.+. +++++|.||+||+++.++.  ......+.+++|+|+++++++|+|.|
T Consensus       299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  354 (517)
T 3r44_A          299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDD  354 (517)
T ss_dssp             HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTT
T ss_pred             HHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCC
Confidence            999999887 9999999999999865542  22224567899999999999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=6.7e-52  Score=400.79  Aligned_cols=331  Identities=32%  Similarity=0.478  Sum_probs=273.2

Q ss_pred             HHHHHHhCCcCCCceEEE---eCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~---~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      .+.|.++++++|+++|+.   ++++++||+||.++++++|+.|+++                 |+++||+|+++++|+++
T Consensus         3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~   65 (503)
T 4fuq_A            3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVAR-----------------GLQVGDRVAAQTEKSVE   65 (503)
T ss_dssp             CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred             hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            356788889999999988   4678999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..........+..+.................
T Consensus        66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (503)
T 4fuq_A           66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE  145 (503)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS
T ss_pred             HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC
Confidence            99999999999999999999999999999999999999999987655554444433332222221110000000000011


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++|+|||||||.||||+++|+++...+......++++++|++++.+|++|.+++...++.+++.|+++
T Consensus       146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~  225 (503)
T 4fuq_A          146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSM  225 (503)
T ss_dssp             CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEE
T ss_pred             CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence            11223456789999999999999999999999999999999999999999999999999999998765677889999999


Q ss_pred             EEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~  320 (372)
                      ++.+.+++..+++.          ++  ++|+++++|+++..+++...        ....+++++|.+++||+++++++.
T Consensus       226 ~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~l~~~~~  285 (503)
T 4fuq_A          226 IFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPR--------LTKETTGHMRLFISGSAPLLADTH  285 (503)
T ss_dssp             EECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTT--------CSTTTTTTCCEEEECSSCCCHHHH
T ss_pred             EEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCC--------ccccchhhcEEEEECCCCCCHHHH
Confidence            99999999999998          55  79999999999999987632        234467899999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +.|.+.+|.+++|.||+||++..++.........+++|+|++|++++|+|.
T Consensus       286 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~  336 (503)
T 4fuq_A          286 REWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDP  336 (503)
T ss_dssp             HHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECT
T ss_pred             HHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEEC
Confidence            999999999999999999999776655555667789999999999999994

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.5e-51  Score=401.02  Aligned_cols=336  Identities=21%  Similarity=0.281  Sum_probs=279.4

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCC--------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      +|+.+.|.++++++||++|+++.+        +++||+||.++++++|+.|++.                 |+++||+|+
T Consensus        19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~   81 (549)
T 3g7s_A           19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-----------------GVRKGEHVG   81 (549)
T ss_dssp             CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence            578899999999999999999876        8999999999999999999994                 999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCC
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE  152 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (372)
                      ++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...+.+...........+.+... .....
T Consensus        82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  160 (549)
T 3g7s_A           82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL  160 (549)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred             EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence            99999999999999999999999999999999999999999999999999988887777655444322221111 00000


Q ss_pred             cccccc-cccccccCCC-CCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 017382          153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (372)
Q Consensus       153 ~~~~~~-~~~~~~~~~~-~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~  230 (372)
                      ...... .......... ++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++.. +
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~  239 (549)
T 3g7s_A          161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V  239 (549)
T ss_dssp             HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred             HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence            000000 0001112223 389999999999999999999999999999999988899999999999999999999865 7


Q ss_pred             HHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~  310 (372)
                      +.++..|+++++.+.+++..+++.          ++++++|+++++|+++..+.+.....      ....+++++|.+++
T Consensus       240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~~~~  303 (549)
T 3g7s_A          240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESS------NKTYDWSYLKVFAT  303 (549)
T ss_dssp             TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHS------CCCCCCTTCCEEEE
T ss_pred             HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhh------cccCCccceeEEEe
Confidence            788999999999999999999998          78899999999999999998763211      11257899999999


Q ss_pred             cCCCCCHHHHHHHHHH----hC---CccccccccccccccccCC-CCCCCCCCcccccCCCceEEEeec
Q 017382          311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       311 gG~~~~~~~~~~~~~~----~~---~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      ||+++++++.+.|.+.    ++   .+++|.||+||++++++.. .....+.+++|+|+++++++|+|.
T Consensus       304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~  372 (549)
T 3g7s_A          304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISL  372 (549)
T ss_dssp             ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECS
T ss_pred             CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeC
Confidence            9999999999999887    66   8999999999998766543 333467789999999999999993

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2.4e-51  Score=401.22  Aligned_cols=336  Identities=21%  Similarity=0.244  Sum_probs=273.6

Q ss_pred             CHHHHHHHHhCCcCCCceEEE---e--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382            1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~---~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~   75 (372)
                      +|+.+.|.++++++|+++|++   +  .++++||+||.++++++|+.|++                 .|+++||+|++++
T Consensus        20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~   82 (550)
T 3rix_A           20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS   82 (550)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence            478999999999999999976   3  46899999999999999999999                 5999999999999


Q ss_pred             CCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCCc
Q 017382           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET  153 (372)
Q Consensus        76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  153 (372)
                      +|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+.  .++.+..........
T Consensus        83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (550)
T 3rix_A           83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ  162 (550)
T ss_dssp             SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred             CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence            999999999999999999999999999999999999999999999999888877766554432  222222211111000


Q ss_pred             ccccc-----------cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---cccCCCCeEEEecC
Q 017382          154 TVFDQ-----------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP  219 (372)
Q Consensus       154 ~~~~~-----------~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~p  219 (372)
                      ...+.           ..........++++++|+|||||||.||||+++|+++...+......   +++.++|++++.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  242 (550)
T 3rix_A          163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP  242 (550)
T ss_dssp             BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred             cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence            00000           00011112235789999999999999999999999999887776654   46788999999999


Q ss_pred             chhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (372)
Q Consensus       220 l~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  299 (372)
                      ++|.+++. .++.+++.|+++++.+.+++..+++.          ++++++|+++++|+++..+.+...        ...
T Consensus       243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~  303 (550)
T 3rix_A          243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK  303 (550)
T ss_dssp             TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred             HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence            99999986 57788999999999999999999998          788999999999999999987632        234


Q ss_pred             hhccCceEEEecCCCCCHHHHHHHHHHhCCc-cccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       300 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+++++|.+++||+++++++.+.|.+.|+.. ++|.||+||+++.++.......+.+++|+|+|+++++|+|.|
T Consensus       304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~  377 (550)
T 3rix_A          304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLD  377 (550)
T ss_dssp             SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTT
T ss_pred             cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCC
Confidence            5789999999999999999999999999875 899999999987766555555678999999999999999953

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=7.4e-51  Score=396.71  Aligned_cols=334  Identities=18%  Similarity=0.208  Sum_probs=274.6

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.|.++++++||++|+++.++++||+||.++++++|+.|++                 .|+++||+|+++++|+++
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~   87 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE   87 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence            378899999999999999999999999999999999999999999                 599999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch-----HHHHHHHHhhcCC-ccccc-CCCCCCCCCc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KFSLI-PPVPNVSSET  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  153 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++++.     ...+..+....+. ..+.+ .....+.   
T Consensus        88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  164 (539)
T 1mdb_A           88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFL---  164 (539)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSE---
T ss_pred             HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchh---
Confidence            999999999999999999999999999999999999999998753     2233333322221 11111 1111110   


Q ss_pred             ccccc-cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHH
Q 017382          154 TVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (372)
Q Consensus       154 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~  231 (372)
                      ..... ..........++++++|+|||||||.||||+++|+++...+......++++++|++++.+|++|.+++.. .++
T Consensus       165 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  244 (539)
T 1mdb_A          165 PLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL  244 (539)
T ss_dssp             EGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred             hhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence            00000 0011123456789999999999999999999999999999988888889999999999999999999864 688


Q ss_pred             HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (372)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g  311 (372)
                      .+++.|+++++.+.+++..+++.          ++++++|+++++|+++..+++..        .....++++||.+++|
T Consensus       245 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~l~~lr~~~~g  306 (539)
T 1mdb_A          245 GVLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAA--------SSRRDDLSSLQVLQVG  306 (539)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHH--------HHCCCCCTTCCEEEEE
T ss_pred             HHHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCc--------cccCCCccceeEEEEc
Confidence            89999999999999999999998          78899999999999999998752        2234578999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCC-ceEEEeecC
Q 017382          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG-VQVSMILLL  372 (372)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g-~~i~Ivd~d  372 (372)
                      |+++++++.++|.+.+|++++|.||+||++...+.... .....+++|+|+++ .+++|+|.+
T Consensus       307 G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~  369 (539)
T 1mdb_A          307 GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDH  369 (539)
T ss_dssp             SSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTT
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCC
Confidence            99999999999999999999999999997654443222 12345789999976 589999864

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=9.3e-51  Score=398.79  Aligned_cols=332  Identities=18%  Similarity=0.268  Sum_probs=273.9

Q ss_pred             HHHHHHhCCcCCCceEEEe-----CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            4 FKAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~-----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      ++.|.++++++||++|+++     .++++||+||.++++++|+.|++                 +|+++||+|+++++|+
T Consensus        59 ~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-----------------~Gv~~Gd~V~l~~~~~  121 (580)
T 3etc_A           59 YDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-----------------HGIGKGDYVMLTLKSR  121 (580)
T ss_dssp             HHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECTTC
T ss_pred             HHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCC
Confidence            4889999999999999996     24789999999999999999999                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH--HHHHHHHhhcCC---cccccCCCCCCCCCc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSGA---KFSLIPPVPNVSSET  153 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~  153 (372)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..  +.+.........   ..+.+... ......
T Consensus       122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  200 (580)
T 3etc_A          122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWI  200 (580)
T ss_dssp             THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCE
T ss_pred             HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccc
Confidence            999999999999999999999999999999999999999999987654  555555443331   22222211 000001


Q ss_pred             ccccc----cc----cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHH
Q 017382          154 TVFDQ----SQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG  225 (372)
Q Consensus       154 ~~~~~----~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~  225 (372)
                      ...+.    ..    ........++|+++|+|||||||.||+|.++|.+++..+......+++.+++++++..|++|..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (580)
T 3etc_A          201 DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC  280 (580)
T ss_dssp             EHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHH
T ss_pred             cHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHH
Confidence            11000    00    00012456789999999999999999999999999888777666778899999999999999998


Q ss_pred             HHHHHHHHHHcCceEEEc--CCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhcc
Q 017382          226 LFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK  303 (372)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~  303 (372)
                      .+..++.++..|+++++.  +.+++..+++.          ++++++|+++++|+++..+.+.         .....+++
T Consensus       281 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~---------~~~~~~l~  341 (580)
T 3etc_A          281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKE---------DLSHYNFS  341 (580)
T ss_dssp             HHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTS---------CC---CCT
T ss_pred             HHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhc---------ccccCCCc
Confidence            877788899999999988  57899999998          7889999999999999999774         12345789


Q ss_pred             CceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       304 ~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +||.+++||+++++++.++|.+.+|+++++.||+||+++.++.......+.+++|+|+||++++|+|+|
T Consensus       342 ~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~  410 (580)
T 3etc_A          342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRD  410 (580)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTT
T ss_pred             cceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCC
Confidence            999999999999999999999999999999999999987666555456778999999999999999975

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.4e-50  Score=393.24  Aligned_cols=334  Identities=17%  Similarity=0.249  Sum_probs=271.1

Q ss_pred             CHHHHHHHHhCCcCCCceEEE----eCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            1 MEVFKAAYKKGSMARDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~----~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      +|+.+.|.++++++||++|++    ++++++||+||.++++++|+.|++                 +|+++||+|+++++
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~   80 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-----------------LGVGVGDRVATLGF   80 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            468899999999999999999    356899999999999999999999                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCCcc
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETT  154 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  154 (372)
                      |+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.......+.  .++.+..... .....
T Consensus        81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  159 (541)
T 1v25_A           81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-EGYLA  159 (541)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC-TTCEE
T ss_pred             CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC-ccccc
Confidence            99999999999999999999999999999999999999999999999887777665543321  1222221110 00000


Q ss_pred             cccccc-cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHH--HhhcccCCCCeEEEecCchhHHHHHHHHH
Q 017382          155 VFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (372)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~~~~~~~~  231 (372)
                      ..+... ........++++++|+|||||||.||||++||+++.......  ...++++++|++++.+|++|..++. .++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~  238 (541)
T 1v25_A          160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPY  238 (541)
T ss_dssp             HHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHH
T ss_pred             HHHHhhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHH
Confidence            000000 011133456899999999999999999999999998776653  3456788999999999999999985 477


Q ss_pred             HHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382          232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (372)
Q Consensus       232 ~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~  310 (372)
                      .+++.|+++++.+. +++..+++.          ++++++|+++++|+++..+.+..        .....+++++|.+++
T Consensus       239 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~l~~lr~i~~  300 (541)
T 1v25_A          239 AATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYL--------ESTGHRLKTLRRLVV  300 (541)
T ss_dssp             HHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHH--------HHHTCCCSSCCEEEE
T ss_pred             HHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhh--------hccCCcchhccEEEE
Confidence            88999999999874 699999988          78899999999999999998753        223457899999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCC-----------CCCCCcccccCCCceEEEeecC
Q 017382          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ||+++++++.+.| +.+|++++|.||+||++.+++.....           ....+++|+|+||++++|+|+|
T Consensus       301 gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  372 (541)
T 1v25_A          301 GGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE  372 (541)
T ss_dssp             CSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT
T ss_pred             CCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCC
Confidence            9999999999999 66899999999999998665432211           0235789999999999999964

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.3e-50  Score=395.37  Aligned_cols=337  Identities=15%  Similarity=0.190  Sum_probs=274.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.|.++++++||++|++++++++||+||.++++++|+.|++.                 |+++||+|+++++|+++
T Consensus        30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~   92 (544)
T 3o83_A           30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEK-----------------GLGKGDTALVQLPNVAE   92 (544)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHH
T ss_pred             CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHC-----------------CCCCCCEEEEECCCCHH
Confidence            4688999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC-Cc-ccccCCCCCCCCCc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AK-FSLIPPVPNVSSET  153 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~-~~~~~~~~~~~~~~  153 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|+++...     ........... .. ..............
T Consensus        93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (544)
T 3o83_A           93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL  172 (544)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred             HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence            9999999999999999999999999999999999999999987543     23333322211 11 11111110000000


Q ss_pred             ccccc--cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HH
Q 017382          154 TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL  230 (372)
Q Consensus       154 ~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~  230 (372)
                      .....  ..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. .+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~  252 (544)
T 3o83_A          173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA  252 (544)
T ss_dssp             HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred             hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence            00000  0011113446789999999999999999999999999999999999999999999999999999998864 57


Q ss_pred             HHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (372)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~  310 (372)
                      +.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        ....+++++|.+++
T Consensus       253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~i~~  314 (544)
T 3o83_A          253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAA--------QYKDQIQSLKLLQV  314 (544)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHT--------TTHHHHTTCCEEEE
T ss_pred             HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchh--------hccccCCcceEEEE
Confidence            889999999999999999999998          788999999999999999987633        23346799999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccC-CCceEEEeecC
Q 017382          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPL-PGVQVSMILLL  372 (372)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~-~g~~i~Ivd~d  372 (372)
                      ||+++++++.+.|.+.+|+++++.||+||++...+.... .....+++|+|+ ++++++|+|.+
T Consensus       315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~  378 (544)
T 3o83_A          315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQ  378 (544)
T ss_dssp             ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTT
T ss_pred             cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCC
Confidence            999999999999999999999999999998865543322 223457899997 89999999964

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3.3e-50  Score=392.83  Aligned_cols=333  Identities=21%  Similarity=0.257  Sum_probs=273.2

Q ss_pred             HHHH-HHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         2 ~~~~-~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      |+.+ .+.++++++ |++|+++  .++++||+||.++++++|+.|++                 +|+++||+|+++++|+
T Consensus        26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~   87 (548)
T 2d1s_A           26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC   87 (548)
T ss_dssp             HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred             cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence            6778 888889889 9999997  57899999999999999999999                 5999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--CcccccCCCCC---CCCCc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET  153 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~  153 (372)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.......+  ..++.+.....   .....
T Consensus        88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (548)
T 2d1s_A           88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD  167 (548)
T ss_dssp             TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred             hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence            99999999999999999999999999999999999999999999987776665543332  22222221110   00000


Q ss_pred             cccccc-cc-ccccCC------CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---cccCCCCeEEEecCchh
Q 017382          154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH  222 (372)
Q Consensus       154 ~~~~~~-~~-~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~  222 (372)
                      ...... .. ......      .++++++|+|||||||.||+|++||+++...+......   ++++++|++++.+|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  247 (548)
T 2d1s_A          168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH  247 (548)
T ss_dssp             HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred             HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence            000000 00 001111      23899999999999999999999999999988877666   67889999999999999


Q ss_pred             HHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhc
Q 017382          223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (372)
Q Consensus       223 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l  302 (372)
                      ..++...++.++ .|+++++.+.+++..+++.          ++++++|+++++|+++..+.+...        ....++
T Consensus       248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l  308 (548)
T 2d1s_A          248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL  308 (548)
T ss_dssp             HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred             HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence            999976567777 9999999999999999998          788999999999999999987522        234578


Q ss_pred             cCceEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       303 ~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      +++|.+++||+++++++.+.|.+.| +.++++.||+||++.+++.......+.+++|+|+|+++++|+|.
T Consensus       309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~  378 (548)
T 2d1s_A          309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDL  378 (548)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECT
T ss_pred             cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeC
Confidence            9999999999999999999999999 68899999999998766544334467789999999999999994

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=6e-50  Score=387.43  Aligned_cols=330  Identities=20%  Similarity=0.248  Sum_probs=267.1

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      ||+.+.|.++++++||++|+++.  ++++||+||.++++++|+.|++.                 |+++||+|+++++|+
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~~~   64 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNS   64 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSC
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence            57999999999999999999987  88999999999999999999994                 999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEe--ccchHHHH-HHHHhhcCCcccccCCCCCCCCCccc
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVL-QNVASKSGAKFSLIPPVPNVSSETTV  155 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (372)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|+  +....+.+ ... .  ...++.+....  ......
T Consensus        65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~  139 (504)
T 1t5h_X           65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG-S--GARIIFLGDLV--RDGEPY  139 (504)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC-C--CCEEEEGGGTE--ETTEEC
T ss_pred             HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc-c--cceeEEecchh--hcCccc
Confidence            9999999999999999999999999999999999999999999  76654443 221 1  11111111000  000000


Q ss_pred             ccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhccc--CCCCeEEEecCchhHHHHHHHHHHH
Q 017382          156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAP  233 (372)
Q Consensus       156 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~~~~~~~~~~  233 (372)
                       ............++++++|+|||||||.||||+++|+++...+......+++  .++|++++.+|++|..++...++.+
T Consensus       140 -~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~  218 (504)
T 1t5h_X          140 -SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA  218 (504)
T ss_dssp             -CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred             -ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence             0000011133467899999999999999999999999999988888877887  7899999999999999986568889


Q ss_pred             HHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (372)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~  313 (372)
                      +..|+++++.+.+++..+++.          ++++++|+++++|+++..+.+....      .....+++++|.+++||+
T Consensus       219 l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~l~~lr~~~~gG~  282 (504)
T 1t5h_X          219 LALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGA  282 (504)
T ss_dssp             HHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCC------TTCCCCCTTCCEEEECCT
T ss_pred             HHcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhcc------ccccccCccccEEEEcCC
Confidence            999999999999999999998          7889999999999999999875311      012346799999999999


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++++.+.|.+.++.+++|.||+||++......   ..+.+++|+|+++++++|+|.+
T Consensus       283 ~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~~~~~~~g~p~~~~~~~i~~~~  338 (504)
T 1t5h_X          283 TMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---QPKTGTEMAPGFFSEVRIVRIG  338 (504)
T ss_dssp             TCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---SCSSSSEEBCCTTCCEEEECTT
T ss_pred             cCCHHHHHHHHHhcCcceeeeecccccccccccc---CCCCCccccCCCCCceeEEecc
Confidence            9999999999999999999999999994332221   3466899999999999999864

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.4e-50  Score=387.00  Aligned_cols=330  Identities=18%  Similarity=0.235  Sum_probs=263.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCC---------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V   71 (372)
                      +|+.+.|.++++++||++|+++.+         +++||+||.++++++|+.|++.                 |+ +||+|
T Consensus        24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~-~gd~V   85 (480)
T 3t5a_A           24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-----------------GS-TGDRV   85 (480)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-----------------SC-TTCEE
T ss_pred             ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-----------------CC-CCCEE
Confidence            578999999999999999999754         8999999999999999999994                 85 99999


Q ss_pred             EEEcCCCHhHHHHHHHHHhhCceeeeCCC---CCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC----cccccC
Q 017382           72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP  144 (372)
Q Consensus        72 ~l~~~n~~~~~~~~~A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~  144 (372)
                      +++++|++++++++|||+++|++++|+++   .++.+++.+++++++++++|++++..+.+.........    ....+.
T Consensus        86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (480)
T 3t5a_A           86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD  165 (480)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred             EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence            99999999999999999999999999999   77899999999999999999999877666554322111    111111


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCC------CCeEEEec
Q 017382          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL  218 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~d~~l~~~  218 (372)
                      ...        .............++++++|+|||||||.||||++||+++..++......+.+..      +|++++++
T Consensus       166 ~~~--------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~  237 (480)
T 3t5a_A          166 LLD--------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL  237 (480)
T ss_dssp             GSC--------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred             ccc--------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence            000        0001111233456789999999999999999999999999999988888887777      99999999


Q ss_pred             CchhHHHHHHHHHHHHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHH
Q 017382          219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL  294 (372)
Q Consensus       219 pl~~~~~~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  294 (372)
                      |++|.+++...++.+++.|+++++.+.+    ++..+++.          ++++++| +..+|+++..++......    
T Consensus       238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~----  302 (480)
T 3t5a_A          238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTD----  302 (480)
T ss_dssp             CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCT----
T ss_pred             CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCc----
Confidence            9999999877789999999999999764    88888888          8999999 888999988887642110    


Q ss_pred             HHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC------CccccccccccccccccCCCCC------------------
Q 017382          295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRG------------------  350 (372)
Q Consensus       295 ~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~------------------  350 (372)
                      ......++++||.+++||+++++++.++|.+.|+      ..++|.||+||++++++.....                  
T Consensus       303 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  382 (480)
T 3t5a_A          303 DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA  382 (480)
T ss_dssp             GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBC
T ss_pred             ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCce
Confidence            1234567899999999999999999999999884      3799999999998766532211                  


Q ss_pred             -------CCCCCcccccCCCceEEEeecC
Q 017382          351 -------ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       351 -------~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                             ..+.+++|+|++ ++++|+|+|
T Consensus       383 ~~~~~~~~~~~~~~G~p~~-~~~~ivd~~  410 (480)
T 3t5a_A          383 KPCAGGGATSLISYMLPRS-PIVRIVDSD  410 (480)
T ss_dssp             CCCCSSSCEEEECEECCSS-SEEEEEETT
T ss_pred             eecCCCCcceeeecCcccC-CEEEEEcCC
Confidence                   124468999999 999999964

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.1e-49  Score=396.27  Aligned_cols=337  Identities=20%  Similarity=0.227  Sum_probs=270.0

Q ss_pred             HHHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         3 ~~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      +++.|.++++++||++|+++      .++++||+||.+++.++|+.|++                 +|+++||+|+++++
T Consensus        78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~  140 (652)
T 1pg4_A           78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP  140 (652)
T ss_dssp             HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred             HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence            45677788888999999997      34789999999999999999999                 59999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC----Cccccc
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLI  143 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~  143 (372)
                      |++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+......    ..++.+
T Consensus       141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  220 (652)
T 1pg4_A          141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL  220 (652)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred             CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999998653         233444333221    112222


Q ss_pred             CCCCC-CC--CC--ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHH-HHHhhcccCCCCe
Q 017382          144 PPVPN-VS--SE--TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ  213 (372)
Q Consensus       144 ~~~~~-~~--~~--~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~  213 (372)
                      ..... ..  ..  ....+    ...........++++++|+|||||||.||||+++|++++..+. .....+++.++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  300 (652)
T 1pg4_A          221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI  300 (652)
T ss_dssp             CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence            21110 00  00  00000    0000112234578999999999999999999999999887664 4456678999999


Q ss_pred             EEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhh
Q 017382          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (372)
Q Consensus       214 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~  289 (372)
                      +++..|++|+.++...++.+|+.|+++++.+.    +++..+++.          ++++++|+++++|+++..+.+....
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~  370 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK  370 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence            99999999999986568899999999999875    588999998          7889999999999999999875321


Q ss_pred             ccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCCC--CCCCCCcccccCCCc
Q 017382          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGV  364 (372)
Q Consensus       290 ~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~  364 (372)
                            .....++++||.+++||++++++++++|.+.+|   +++++.||+||+++.++....  ...+.+++|+|++|+
T Consensus       371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~  444 (652)
T 1pg4_A          371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV  444 (652)
T ss_dssp             ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC
T ss_pred             ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC
Confidence                  123457899999999999999999999999988   899999999999876554322  245679999999999


Q ss_pred             eEEEeecC
Q 017382          365 QVSMILLL  372 (372)
Q Consensus       365 ~i~Ivd~d  372 (372)
                      +++|+|.+
T Consensus       445 ~v~i~d~~  452 (652)
T 1pg4_A          445 QPALVDNE  452 (652)
T ss_dssp             CEEEECTT
T ss_pred             eEEEECCC
Confidence            99999964

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.1e-49  Score=382.94  Aligned_cols=328  Identities=19%  Similarity=0.246  Sum_probs=268.1

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.|.++++++||++|++++++++||+||.++++++|+.|++.                 |+++||+|+++++|+++
T Consensus         6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~   68 (509)
T 3ivr_A            6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRD-----------------GVHTGDRVAILSQNCSE   68 (509)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHH
Confidence            5889999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc--ccccCCCCCCCCCccccc-
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSETTVFD-  157 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-  157 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..........  .+.+....  ........ 
T Consensus        69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  146 (509)
T 3ivr_A           69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS--GPFAPFKDL  146 (509)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC--SSCEEGGGT
T ss_pred             HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC--cChhhHhhc
Confidence            99999999999999999999999999999999999999999998877654443333211  11121110  00011111 


Q ss_pred             -ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHc
Q 017382          158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA  236 (372)
Q Consensus       158 -~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~  236 (372)
                       ...........++++++|+|||||||.||+|+++|+++...+......+++.++|++++.+|++|..++.. ++.++..
T Consensus       147 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~  225 (509)
T 3ivr_A          147 ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQA  225 (509)
T ss_dssp             CCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHH
T ss_pred             cCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHh
Confidence             11111233456789999999999999999999999999999999999999999999999999999999975 4444555


Q ss_pred             CceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCC
Q 017382          237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP  316 (372)
Q Consensus       237 G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~  316 (372)
                      |++.++...+++..+++.          ++++++|++.++|+++..+++..          ...+++++|.++.+|++  
T Consensus       226 ~g~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~--  283 (509)
T 3ivr_A          226 GGASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP--  283 (509)
T ss_dssp             TCEEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH--
T ss_pred             CCcEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh--
Confidence            555555558899999998          78899999999999999998752          23477899999999987  


Q ss_pred             HHHHHHHHHHh-CCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          317 LPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       317 ~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                       ++.+.+.+.+ +++++|.||+||++++++.... .....++|+|++|++++|+|.+
T Consensus       284 -~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~  338 (509)
T 3ivr_A          284 -ETIERFEATCPNATFWATFGQSETSGLSTFAPY-RDRPKSAGRPLFWRTVAVVDAE  338 (509)
T ss_dssp             -HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEG-GGSTTSCCEECTTCEEEEECTT
T ss_pred             -HHHHHHHHhcCCCeEEcccCccccccccccCcc-ccCCCcccccCCCcEEEEECCC
Confidence             8888999888 8999999999999876653322 2334559999999999999974

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.8e-49  Score=386.40  Aligned_cols=334  Identities=23%  Similarity=0.321  Sum_probs=263.6

Q ss_pred             HHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHH
Q 017382            3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV   82 (372)
Q Consensus         3 ~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~   82 (372)
                      +.+.+.++++ +|+++|++++++++||+||.++++++|+.|++                 .|+++||+|+++++|+++++
T Consensus        26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~~   87 (529)
T 2v7b_A           26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRT-----------------LGVHPEERILLVMLDTVALP   87 (529)
T ss_dssp             HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSTHHH
T ss_pred             HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHHH
Confidence            6677888888 99999999989999999999999999999999                 49999999999999999999


Q ss_pred             HHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC---CcccccCCCCC----CCCCccc
Q 017382           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPN----VSSETTV  155 (372)
Q Consensus        83 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~  155 (372)
                      ++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+........   ..++.......    .......
T Consensus        88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (529)
T 2v7b_A           88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL  167 (529)
T ss_dssp             HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred             HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence            9999999999999999999999999999999999999999887766655433211   11111111100    0000000


Q ss_pred             cc-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhH-HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 017382          156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (372)
Q Consensus       156 ~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~  233 (372)
                      .. ...........++++++|+|||||||.||+|++||+++ ..........+++.++|++++.+|++|..++...++.+
T Consensus       168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  247 (529)
T 2v7b_A          168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP  247 (529)
T ss_dssp             HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred             hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence            00 00111122346789999999999999999999999999 55554444566788999999999999999997667888


Q ss_pred             HHcCceEEEc-CCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       234 l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      +..|+++++. +.+++..+++.          ++++++|+++++|+++..+++....        ......++|.+++||
T Consensus       248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG  309 (529)
T 2v7b_A          248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNL--------PARADVAIRICTSAG  309 (529)
T ss_dssp             HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTC--------CCGGGCCCCEEEECS
T ss_pred             HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCccc--------ccccCCceEEEEEcC
Confidence            9999999988 67899999998          7889999999999999998865221        111124899999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++++.+.|.+.+|+++++.||+||++.+.+.......+.+++|+|++|++++|+|++
T Consensus       310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  369 (529)
T 2v7b_A          310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEA  369 (529)
T ss_dssp             SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTT
T ss_pred             CCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCC
Confidence            999999999999999999999999999965544333334567899999999999999964

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.6e-50  Score=392.26  Aligned_cols=327  Identities=17%  Similarity=0.227  Sum_probs=267.5

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+.+.|.++++++||++|+++.++++||+||.++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~e   63 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISS-----------------EYPDDRSPIMVYGHMQPE   63 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HSTTCCCCEEEEESSCHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHH
Confidence            899999999999999999999999999999999999999999999                 599999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++.....      ............   ............
T Consensus        64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~  134 (512)
T 3fce_A           64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSEDN---LKDIFFTHKGNT  134 (512)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEETHH---HHHHHHHTTTCC
T ss_pred             HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceechhh---hhhhcccccccC
Confidence            99999999999999999999999999999999999999999853210      000000000000   000000000001


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|..++. .++.+++.|+++
T Consensus       135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~  213 (512)
T 3fce_A          135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL  213 (512)
T ss_dssp             CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred             CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence            1122345678999999999999999999999999999999988899999999999999999999986 588999999999


Q ss_pred             EEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      ++.+.   +++..+++.          ++++++|++.++|+++..++...        .....+++++|.+++||+++++
T Consensus       214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~~~~~G~~l~~  275 (512)
T 3fce_A          214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEA--------SFSESMLPNMKTFLFCGEVLPN  275 (512)
T ss_dssp             EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTST--------TCSTTTSTTCCEEEECSSCCCH
T ss_pred             EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc--------cccchhCccccEEEEecCcCCH
Confidence            99987   688899888          78899999999999999887652        2234578999999999999999


Q ss_pred             HHHHHHHHHh-CCccccccccccccccccCCCC-----CCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.+.|.+.| ++++++.||+||+++.++....     ......++|+|+++++++|+|.+
T Consensus       276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  336 (512)
T 3fce_A          276 EVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED  336 (512)
T ss_dssp             HHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSS
T ss_pred             HHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCC
Confidence            9999999999 8899999999999876552211     12466789999999999999964

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.9e-49  Score=387.61  Aligned_cols=332  Identities=18%  Similarity=0.186  Sum_probs=269.5

Q ss_pred             HHHHHHHhCCc-----CCCceEEEeC-----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382            3 VFKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (372)
Q Consensus         3 ~~~~l~~~a~~-----~~~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~   72 (372)
                      +.+.+.++++.     +||++|+++.     ++++||+||.++++++|+.|++.                +|+++||+|+
T Consensus        40 ~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----------------~Gv~~gd~V~  103 (570)
T 3c5e_A           40 ASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGA----------------CGLQRGDRVA  103 (570)
T ss_dssp             HHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTT----------------TCCCTTCEEE
T ss_pred             HHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHc----------------cCCCCCCEEE
Confidence            35677777777     9999999972     37899999999999999999983                3999999999


Q ss_pred             EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCC
Q 017382           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVS  150 (372)
Q Consensus        73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  150 (372)
                      ++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.  .++.+.... ..
T Consensus       104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (570)
T 3c5e_A          104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-CD  182 (570)
T ss_dssp             EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSC-CT
T ss_pred             EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccC-cc
Confidence            999999999999999999999999999999999999999999999999998887777665443332  111221100 00


Q ss_pred             CCccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHH--HHHHHHhhcccCCCCeEEEecCchhHH
Q 017382          151 SETTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVH  224 (372)
Q Consensus       151 ~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~~~~  224 (372)
                      ......+    ...........++++++|+|||||||.||||+++|+ ++.  ..... ..+++.++|++++..|++|..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~  260 (570)
T 3c5e_A          183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWIL  260 (570)
T ss_dssp             TSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHH
T ss_pred             ccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHH
Confidence            0000000    000111233467899999999999999999999999 544  33333 667888999999999999999


Q ss_pred             HHHHHHHHHHHcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhc
Q 017382          225 GLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (372)
Q Consensus       225 ~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l  302 (372)
                      ++...++.++..|+++++.+  .+++..+++.          ++++++|+++++|+++..+.+..         ....++
T Consensus       261 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~  321 (570)
T 3c5e_A          261 NILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKF  321 (570)
T ss_dssp             HHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCC
T ss_pred             HHHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------cccccc
Confidence            98767888999999999987  6899999998          78899999999999999998641         223467


Q ss_pred             cCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       303 ~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++|.+++||+++++++.+.|.+.+|++++|.||+||++.+++.......+.+++|+|++|++++|+|+|
T Consensus       322 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~  391 (570)
T 3c5e_A          322 PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDK  391 (570)
T ss_dssp             TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTT
T ss_pred             ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCC
Confidence            9999999999999999999999989999999999999987665444334567899999999999999964

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=6.5e-49  Score=388.00  Aligned_cols=316  Identities=18%  Similarity=0.187  Sum_probs=262.4

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      |+++.|.++++++||++|+++.++++||+||.++++++|+.|++                 .|+++||+|+++++|++++
T Consensus        28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~   90 (620)
T 4dg8_A           28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLE-----------------HYPQPGVCLGVYGEYSRES   90 (620)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HCCSSCCEEEEESSSCHHH
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            68899999999999999999999999999999999999999999                 5999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|++|.++.+++.+++++++++++++++......    .  ......+.         ........
T Consensus        91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~----~--~~~~~~~~---------~~~~~~~~  155 (620)
T 4dg8_A           91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA----N--GLPCVPVR---------HLPAAPAS  155 (620)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC----T--TSCEEEGG---------GCCCCCCC
T ss_pred             HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc----c--CCceeeec---------cCCcCCcc
Confidence            999999999999999999999999999999999999999765321100    0  00000000         00000011


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++..|++|..+++ .++.+++.|++++
T Consensus       156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  233 (620)
T 4dg8_A          156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV  233 (620)
T ss_dssp             SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence            1122345789999999999999999999999999876654 4566888999999999999999986 5889999999999


Q ss_pred             EcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +.+  .+++..+++.          ++++++|+++++|+++..+.+.           ...++++||.+++||++++++.
T Consensus       234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~  292 (620)
T 4dg8_A          234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH  292 (620)
T ss_dssp             ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred             eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence            965  5789999888          8889999999999999998763           2236789999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccC----CCCCCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETIT-GHRLLERYGMTEFVMAISN----PLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~----~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+++.+.+ +++++|.||+||+++.++.    .........++|+|++|++++|+|.+
T Consensus       293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~  350 (620)
T 4dg8_A          293 VRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEH  350 (620)
T ss_dssp             HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTT
T ss_pred             HHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECcc
Confidence            99988776 8899999999999876542    12223456789999999999999974

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.9e-49  Score=394.97  Aligned_cols=337  Identities=18%  Similarity=0.244  Sum_probs=269.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHh-hCCCCcccccccccccccccCCCCCEEEEE
Q 017382            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIV   74 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~-~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~   74 (372)
                      ++++.|.++++++||++|+++      .++++||+||.+++.++|+.|+ +                 +|+++||+|+++
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~  145 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVY  145 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEEC
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEE
Confidence            356778899999999999997      3478999999999999999998 7                 599999999999


Q ss_pred             cCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC--Cccccc
Q 017382           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG--AKFSLI  143 (372)
Q Consensus        75 ~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~--~~~~~~  143 (372)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+.....+  ..++.+
T Consensus       146 ~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  225 (663)
T 1ry2_A          146 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVY  225 (663)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEE
T ss_pred             cCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEE
Confidence            999999999999999999999999999999999999999999999998753         233444333222  112222


Q ss_pred             CCCCC--CC--CC--ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHH-HHHhhcccCCCC
Q 017382          144 PPVPN--VS--SE--TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSAD  212 (372)
Q Consensus       144 ~~~~~--~~--~~--~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d  212 (372)
                      .....  ..  ..  ....+    ...........++++++|+|||||||.||||+++|.+++..+. .....+++.++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d  305 (663)
T 1ry2_A          226 RKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED  305 (663)
T ss_dssp             CSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSC
T ss_pred             ecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCc
Confidence            21110  00  00  00000    0000112234578999999999999999999999999887664 345567899999


Q ss_pred             eEEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh
Q 017382          213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (372)
Q Consensus       213 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  288 (372)
                      ++++..|++|+.+....++.+|+.|+++++.+.    +++..+++.          ++++++|+++++|++++.+.+...
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~  375 (663)
T 1ry2_A          306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGD  375 (663)
T ss_dssp             EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCT
T ss_pred             EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCc
Confidence            999999999999986668899999999999875    578999998          788999999999999999876522


Q ss_pred             hccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCC---CCCCCCCcccccCC
Q 017382          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLP  362 (372)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~---~~~~~~~svG~p~~  362 (372)
                      .      .....++++||.+++||+++++++++++.+.+|   +++++.||+||+++.++...   ....+.+++|+|++
T Consensus       376 ~------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~  449 (663)
T 1ry2_A          376 S------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF  449 (663)
T ss_dssp             T------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT
T ss_pred             c------ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcC
Confidence            1      123457899999999999999999999999888   89999999999986554332   22456799999999


Q ss_pred             CceEEEeec
Q 017382          363 GVQVSMILL  371 (372)
Q Consensus       363 g~~i~Ivd~  371 (372)
                      |++++|+|+
T Consensus       450 g~~v~i~d~  458 (663)
T 1ry2_A          450 GIDAVVLDP  458 (663)
T ss_dssp             TCCEEEECS
T ss_pred             CCeEEEEcC
Confidence            999999997

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.7e-49  Score=384.83  Aligned_cols=324  Identities=17%  Similarity=0.274  Sum_probs=270.6

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+.+.|.++++++||++|+++.++++||+||.++++++|+.|.++                .|.++|++|+++++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~   64 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH   64 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence            8999999999999999999999999999999999999999999884                488899999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccc--cc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF--DQ  158 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  158 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|+++....      .........+       ......  ..
T Consensus        65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~  131 (511)
T 3e7w_A           65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTV-------SAEELLENEG  131 (511)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEE-------EHHHHHTSCS
T ss_pred             HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhccccccee-------cHhhhhcccc
Confidence            99999999999999999999999999999999999999999753210      0000000000       000000  00


Q ss_pred             cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       159 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                      ..........++++++|+|||||||.||+|++||+++...+......+++..+|++++.+|++|..++. .++.++..|+
T Consensus       132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~  210 (511)
T 3e7w_A          132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG  210 (511)
T ss_dssp             CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred             CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence            001112334678999999999999999999999999999999988889999999999999999999985 6888999999


Q ss_pred             eEEEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCC
Q 017382          239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (372)
Q Consensus       239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~  315 (372)
                      ++++.+.   +++..+++.          ++++++|++.++|+++..+++...        ....+++++|.+++||+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l  272 (511)
T 3e7w_A          211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL  272 (511)
T ss_dssp             EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred             EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence            9999987   688888888          788999999999999999887522        2345688999999999999


Q ss_pred             CHHHHHHHHHHh-CCccccccccccccccccCCCC-----CCCCCCcccccCCCceEEEeecC
Q 017382          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       316 ~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++.+.+.+.| ++++++.||+||+++.++....     ......++|+|+|+++++|+|++
T Consensus       273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  335 (511)
T 3e7w_A          273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEE  335 (511)
T ss_dssp             CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTT
T ss_pred             CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCC
Confidence            999999999999 8999999999999876553211     12456789999999999999974

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4.5e-49  Score=408.97  Aligned_cols=337  Identities=20%  Similarity=0.270  Sum_probs=280.6

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +|+++.|.++++++||++|+++.  ++++||+||.++++++|+.|++                 .|+++||+|+++++|+
T Consensus        61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ns  123 (979)
T 3tsy_A           61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-----------------LGVNQNDVVMLLLPNC  123 (979)
T ss_dssp             SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEeCCC
Confidence            57899999999999999999986  7899999999999999999999                 4999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCC------
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE------  152 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  152 (372)
                      ++++++++||+++|++++|++|.++++++.+++++++++++|++++..+.+..........++.+.........      
T Consensus       124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (979)
T 3tsy_A          124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF  203 (979)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred             HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence            99999999999999999999999999999999999999999999887666655544433333333322111000      


Q ss_pred             ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHH
Q 017382          153 TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH  224 (372)
Q Consensus       153 ~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~  224 (372)
                      .....    ...........++++++|+|||||||.||||+++|+++...+.....    .+.+.++|++++.+|++|..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~  283 (979)
T 3tsy_A          204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY  283 (979)
T ss_dssp             GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred             HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence            00000    00111233456899999999999999999999999999988776654    34678899999999999999


Q ss_pred             HHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccC
Q 017382          225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (372)
Q Consensus       225 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~  304 (372)
                      ++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...        ....++++
T Consensus       284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~  345 (979)
T 3tsy_A          284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS  345 (979)
T ss_dssp             HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred             HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence            997778889999999999999999999998          788999999999999999987632        23457899


Q ss_pred             ceEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCC-----CCCCCCCCcccccCCCceEEEeecC
Q 017382          305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       305 lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +|.+++||+++++++.+.|.+.| +++++|.||+||++.+++..     .....+.+++|+|++|++++|+|+|
T Consensus       346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  419 (979)
T 3tsy_A          346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPD  419 (979)
T ss_dssp             CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCC
Confidence            99999999999999999999998 89999999999998654422     2223567899999999999999953

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-49  Score=384.22  Aligned_cols=329  Identities=22%  Similarity=0.270  Sum_probs=264.2

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      ||+.+.|.++++++||++|+++.++++||+||.+++.++|+.|++                 .   +||+|+++++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e   60 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ   60 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred             CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence            789999999999999999999999999999999999999999987                 2   79999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccC-CCC-------CC--C
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP-PVP-------NV--S  150 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~--~  150 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++.+.................... ...       ..  .
T Consensus        61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (501)
T 3ipl_A           61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD  140 (501)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred             HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence            9999999999999999999999999999999999999999987543211000000000000000 000       00  0


Q ss_pred             C-Ccccc--cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 017382          151 S-ETTVF--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (372)
Q Consensus       151 ~-~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~  227 (372)
                      . .....  ............++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|..++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  220 (501)
T 3ipl_A          141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS  220 (501)
T ss_dssp             ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred             cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence            0 00000  00011122345679999999999999999999999999999999998899999999999999999999996


Q ss_pred             HHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceE
Q 017382          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (372)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (372)
                      . ++.+++.|+++++.+.+++..+++.          ++++++|++.++|+++..+.+....           ...++|.
T Consensus       221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~lr~  278 (501)
T 3ipl_A          221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLH-----------EPYNLQK  278 (501)
T ss_dssp             H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCC-----------SCTTCCE
T ss_pred             H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCC-----------CcCcccE
Confidence            4 8889999999999999999999999          7889999999999999999875321           1238999


Q ss_pred             EEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC--CCCCCCcccccCCCceEEEeecC
Q 017382          308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++||+++++++.+.+.+ ++++++|.||+||+++.++....  ...+.+++|+|+++++++|+|++
T Consensus       279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  344 (501)
T 3ipl_A          279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN  344 (501)
T ss_dssp             EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC
T ss_pred             EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC
Confidence            999999999999999987 59999999999998865432221  23567899999999999999974

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=7.2e-49  Score=384.24  Aligned_cols=319  Identities=19%  Similarity=0.317  Sum_probs=259.8

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.|.++++++||++|+++.++++||+||.++++++|+.|++.                 |+++||+|+++++|+++
T Consensus        39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~e  101 (563)
T 1amu_A           39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSID  101 (563)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence            3688999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+..  ......+.. ....      ....
T Consensus       102 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~------~~~~  172 (563)
T 1amu_A          102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIK------IREG  172 (563)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTT------TSCC
T ss_pred             HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhc------cccC
Confidence            999999999999999999999999999999999999999999876554332110  011111111 0000      0001


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++|+|||||||.||||++||+++...+......+++.++|++++..|++|..+++ .++.+++.|+++
T Consensus       173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~  251 (563)
T 1amu_A          173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL  251 (563)
T ss_dssp             SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred             ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEE
Confidence            1112234578999999999999999999999999999888888888999999999999999999986 578899999999


Q ss_pred             EEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      ++.+.   +++..+++.          ++++++|++.++|+++..+.+.              .++++|.+++||+++++
T Consensus       252 v~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~  307 (563)
T 1amu_A          252 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSP  307 (563)
T ss_dssp             EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCH
T ss_pred             EEcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCH
Confidence            99886   578888888          7889999999999998776432              46889999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccCC---CCCCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISNP---LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.+.|.+  ..++++.||+||++++++..   ........++|+|++|++++|+|+|
T Consensus       308 ~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~  363 (563)
T 1amu_A          308 SLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDEN  363 (563)
T ss_dssp             HHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTT
T ss_pred             HHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCC
Confidence            99999876  47899999999998655421   1122356789999999999999964

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.5e-48  Score=382.93  Aligned_cols=318  Identities=20%  Similarity=0.268  Sum_probs=262.0

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++++||++|+++.++++||+||.++++++|+.|++                 .|+++||+|+++++|++++
T Consensus        76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~  138 (570)
T 4gr5_A           76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVG-----------------LGVAPGTLVGVHLERGFDM  138 (570)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHHH
T ss_pred             CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            68899999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++||+++|++++|+++.++.+++.+++++++++++|+++.....+.      ......+...       ........
T Consensus       139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~  205 (570)
T 4gr5_A          139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDE-------AASDAPAG  205 (570)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC--------------CC
T ss_pred             HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeecc-------cccccccc
Confidence            9999999999999999999999999999999999999999975422110      0001111000       00001111


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|..+.+ .++.+++.|++++
T Consensus       206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  283 (570)
T 4gr5_A          206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV  283 (570)
T ss_dssp             CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred             ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence            1223456789999999999999999999999999765544 3455788999999999999977765 5888999999999


Q ss_pred             EcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382          242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (372)
Q Consensus       242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~  319 (372)
                      +.+  .+++..+++.          ++++++|++.++|+++..+.+..           ..++++||.+++||+++++++
T Consensus       284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~  342 (570)
T 4gr5_A          284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH  342 (570)
T ss_dssp             ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred             EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence            987  4688888888          78899999999999999998652           235789999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccCC----CCCCCCCCcccccCCCceEEEeecC
Q 017382          320 MQQWETIT-GHRLLERYGMTEFVMAISNP----LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~----~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      .+.+.+.+ ++++++.||+||++++++..    ........++|+|++|++++|+|+|
T Consensus       343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~  400 (570)
T 4gr5_A          343 VAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDD  400 (570)
T ss_dssp             HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTT
T ss_pred             HHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCC
Confidence            99999887 78999999999998665421    1123455779999999999999974

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=5.8e-49  Score=380.29  Aligned_cols=318  Identities=35%  Similarity=0.536  Sum_probs=263.1

Q ss_pred             CHHHHHHHHhCCcCCC-ceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~-~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      +|+++.|.++++++|+ ++|++++++++||+||.++++++|..|..                      |++|+++++|++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~   79 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM   79 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred             chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence            4677888899999998 99999999999999999999999987743                      789999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC-CcccccCCCCCCCCCcccccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ  158 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (372)
                      +++++++||+++|++++|+++.++.+++.+++++++++++|++.+...     ..... .....+..           ..
T Consensus        80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~-----------~~  143 (505)
T 3nyq_A           80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDVDV-----------RA  143 (505)
T ss_dssp             HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEECCT-----------TC
T ss_pred             HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccccccc-----------cc
Confidence            999999999999999999999999999999999999999999864210     00000 00111100           00


Q ss_pred             cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       159 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                      ..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++.++..|+
T Consensus       144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~  223 (505)
T 3nyq_A          144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG  223 (505)
T ss_dssp             CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred             ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence            00111233467899999999999999999999999999999999999999999999999999999998767889999999


Q ss_pred             eEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      ++++.+.+++..+++.          + ++++|+++++|+++..+.+.+...+     ....+++++|.+++||++++++
T Consensus       224 ~~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~l~~lr~i~~gg~~l~~~  287 (505)
T 3nyq_A          224 SVRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADP-----ELAKALAGARLLVSGSAALPVH  287 (505)
T ss_dssp             EEEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCH-----HHHHHHHHCSEEEECSSCCCHH
T ss_pred             EEEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCc-----hhhcccccceEEEECCCCCCHH
Confidence            9999999999999988          6 6799999999999999988643321     1234678899999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.+.+.+|.+++|.||+||+++.++.........+++|+|++|++++|+|.|
T Consensus       288 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~  341 (505)
T 3nyq_A          288 DHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEED  341 (505)
T ss_dssp             HHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC---
T ss_pred             HHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCC
Confidence            999999999999999999999997776655556677899999999999999964

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=5.3e-48  Score=382.36  Aligned_cols=337  Identities=17%  Similarity=0.190  Sum_probs=272.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+++.|.++++  ||++|++++++++||+||.++++++|+.|++.                 |+++||+|+++++|+++
T Consensus        27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~gd~V~l~~~~s~~   87 (617)
T 3rg2_A           27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQ-----------------GIKPGETALVQLGNVAE   87 (617)
T ss_dssp             CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence            478899999988  99999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC-CcccccCCCCCCCCCcc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT  154 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (372)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++....     ........... .................
T Consensus        88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (617)
T 3rg2_A           88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD  167 (617)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred             HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence            9999999999999999999999999999999999999999987543     22222222211 11111111110000000


Q ss_pred             cc-cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHH
Q 017382          155 VF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA  232 (372)
Q Consensus       155 ~~-~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~  232 (372)
                      .. ............++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|.+++.. .++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~  247 (617)
T 3rg2_A          168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG  247 (617)
T ss_dssp             HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred             hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence            00 000111123345789999999999999999999999999999999989999999999999999999988854 5888


Q ss_pred             HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      +++.|+++++.+.+++..+++.          ++++++|++.++|+++..+.+.....      ....+++++|.+++||
T Consensus       248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~i~~gG  311 (617)
T 3rg2_A          248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEG------ESRAQLASLKLLQVGG  311 (617)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTT------CCTTTTTTCCEEEEES
T ss_pred             HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhcc------cccccCCCccEEEEcC
Confidence            9999999999999999998888          78899999999999999998763221      1123688999999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccCCCCC-CCCCCcccccC-CCceEEEeecC
Q 017382          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVSMILLL  372 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~svG~p~-~g~~i~Ivd~d  372 (372)
                      +++++++.+.|.+.+|++++|.||+||++..++..... .....++|+|+ ++++++|+|.+
T Consensus       312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~  373 (617)
T 3rg2_A          312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAE  373 (617)
T ss_dssp             SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTT
T ss_pred             CcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCC
Confidence            99999999999999999999999999998665533221 23346899998 78899999964

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2e-48  Score=378.34  Aligned_cols=325  Identities=17%  Similarity=0.247  Sum_probs=263.7

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +|+.+.|.++++++|+++|+++.++++||+||.++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~   66 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDS-----------------LALLAKSPVLVFGAQTYD   66 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TCCCTTCCEEEEECSSHH
T ss_pred             HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHH
Confidence            468999999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++++....+..      ........   .  .........
T Consensus        67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~------~~~~~~~~---~--~~~~~~~~~  135 (521)
T 3l8c_A           67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG------ISLVSLSE---I--ESAKLAEMP  135 (521)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT------SEEEEHHH---H--HHHHHHTCC
T ss_pred             HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc------Ccccchhh---h--hhcccccCC
Confidence            999999999999999999999999999999999999999998753211000      00000000   0  000000001


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh--cccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  238 (372)
                      ........++++++|+|||||||.||+|++||+++...+......  +.+...+++++..|++|..++. .++.++..|+
T Consensus       136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~  214 (521)
T 3l8c_A          136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG  214 (521)
T ss_dssp             CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred             cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence            112234567899999999999999999999999999887777665  6778999999999999999885 5888899999


Q ss_pred             eEEEcCCC---chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCC
Q 017382          239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (372)
Q Consensus       239 ~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~  315 (372)
                      ++++.+.+   ++..+++.          +.++++|++.++|+++..+.....        ....+++++|.+++||+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l  276 (521)
T 3l8c_A          215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL  276 (521)
T ss_dssp             EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred             EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence            99999875   77888887          788999999999999998876522        2335788999999999999


Q ss_pred             CHHHHHHHHHHh-CCccccccccccccccccCCCC-----CCCCCCcccccCCCceEEEeecC
Q 017382          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       316 ~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++.+.+.+.| ++++++.||+||+++.++....     .....+++|+|+||++++|+|++
T Consensus       277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~  339 (521)
T 3l8c_A          277 TVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDED  339 (521)
T ss_dssp             CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTT
T ss_pred             CHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCC
Confidence            999999999998 8999999999999876543211     12356789999999999999974

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.7e-48  Score=383.02  Aligned_cols=334  Identities=19%  Similarity=0.305  Sum_probs=269.0

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      +|+.+.|.++++++||++|+++.    ++++||+||.++++++|+.|++.                 |+++||+|+++++
T Consensus        11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------gv~~gd~V~i~~~   73 (590)
T 3kxw_A           11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAE-----------------GAKPGDRVLLLFA   73 (590)
T ss_dssp             SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            57899999999999999999863    58999999999999999999994                 9999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCC---CHHHHHHHHhhCCceEEEeccchHHHHHHHH-hhcCCcccccCCCCCCCCC
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSY---PESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGAKFSLIPPVPNVSSE  152 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  152 (372)
                      |++++++++|||+++|++++|+++..   +.+++.++++.+++++++++.+..+.+.... .... ....+.   .....
T Consensus        74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~  149 (590)
T 3kxw_A           74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-KFLKIP---AIALE  149 (590)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-EETTEE---EEEGG
T ss_pred             CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-cccccc---eeech
Confidence            99999999999999999999999988   4578999999999999999987665543221 1111 000000   00000


Q ss_pred             cccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~  232 (372)
                      ................++++++|+|||||||.||||++||+++...+......+++.++|++++++|++|..++...++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~  229 (590)
T 3kxw_A          150 SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT  229 (590)
T ss_dssp             GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred             hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence            00000111112334567899999999999999999999999999999999999999999999999999999999766888


Q ss_pred             HHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEE
Q 017382          233 PLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (372)
Q Consensus       233 ~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v  308 (372)
                      +++.|+++++.+.+    ++..+++.          ++++++|++.++|+++..+.+.+..     ......+++++|.+
T Consensus       230 ~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~l~~lr~~  294 (590)
T 3kxw_A          230 PIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIRE-----EKKEGLDLSSWVTA  294 (590)
T ss_dssp             HHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCG-----GGGTTCCCTTCCEE
T ss_pred             HHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhh-----hhccCCCchhhHHH
Confidence            99999999999876    78888888          7889999999999999998875432     12344578999999


Q ss_pred             EecCCCCCHHHHHHHHHHhC------CccccccccccccccccCCC---------------------------CCCCCCC
Q 017382          309 MCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPL---------------------------RGARKAG  355 (372)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~---------------------------~~~~~~~  355 (372)
                      ++||+++++++.+.|.+.|+      .+++|.||+||++++++...                           .......
T Consensus       295 ~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (590)
T 3kxw_A          295 FNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLV  374 (590)
T ss_dssp             EECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEE
T ss_pred             hhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEe
Confidence            99999999999999999883      37999999999987655321                           1123457


Q ss_pred             cccccCCCceEEEeecC
Q 017382          356 TVGNPLPGVQVSMILLL  372 (372)
Q Consensus       356 svG~p~~g~~i~Ivd~d  372 (372)
                      ++|+|+++  ++|+|.|
T Consensus       375 ~~G~p~~~--v~i~d~~  389 (590)
T 3kxw_A          375 SSGNPIQE--VKIIDPD  389 (590)
T ss_dssp             CCCEESSE--EEEECTT
T ss_pred             ccCCCCCC--eEEEcCC
Confidence            89999998  8888864

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=8.6e-47  Score=370.10  Aligned_cols=325  Identities=17%  Similarity=0.197  Sum_probs=253.5

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCC----------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCE
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR   70 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~   70 (372)
                      ||+.+.|.++++++||++|+++.+          +++||+||.++++++|+.|.+.                 |+ +||+
T Consensus        20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------g~-~gd~   81 (562)
T 3ite_A           20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-----------------SL-HGRA   81 (562)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-----------------TC-SSCE
T ss_pred             CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-----------------CC-CCCE
Confidence            688999999999999999998642          7899999999999999999984                 88 7999


Q ss_pred             EEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCC
Q 017382           71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS  150 (372)
Q Consensus        71 V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (372)
                      |+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++....+     ........+... ...
T Consensus        82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-~~~  155 (562)
T 3ite_A           82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK-NQS  155 (562)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT-CHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc-chh
Confidence            99999999999999999999999999999999999999999999999999986542211     000000000000 000


Q ss_pred             CCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh--------cccCCCCeEEEecCchh
Q 017382          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH  222 (372)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~~  222 (372)
                      ..................++++++|+|||||||.||||+++|+++...+......        +.+...+++++..|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (562)
T 3ite_A          156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF  235 (562)
T ss_dssp             HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred             hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence            0000000001111223456788999999999999999999999998877765543        34778899999999999


Q ss_pred             HHHHHHHHHHHHHcCceEEEcCCCc-hhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhh
Q 017382          223 VHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (372)
Q Consensus       223 ~~~~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  301 (372)
                      ..++. .++.++..|+++++.+.+. ++.+++.          ++++++|++.++|+++..+...            ..+
T Consensus       236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~  292 (562)
T 3ite_A          236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED  292 (562)
T ss_dssp             THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred             hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence            98885 5788899999999987654 4556666          7889999999999988765332            236


Q ss_pred             ccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccC-CCCCCCCCCcccccCCCceEEEeecC
Q 017382          302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       302 l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++++|.+++||+++++++.+.|.+.++++++|.||+||+++.++. ........+++|+|+++++++|+|+|
T Consensus       293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  364 (562)
T 3ite_A          293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPG  364 (562)
T ss_dssp             STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTT
T ss_pred             cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCC
Confidence            789999999999999999999998889999999999999865543 22234566889999999999999864

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=4.4e-45  Score=388.18  Aligned_cols=322  Identities=21%  Similarity=0.317  Sum_probs=263.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      ++++.|.++++++||++|++++++++||+||.++++++|+.|++.                 |+++|++|+|+++|++++
T Consensus       465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~  527 (1304)
T 2vsq_A          465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKH-----------------GAGKGSVVALYTKRSLEL  527 (1304)
T ss_dssp             CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHHH
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhc-----------------CcCCcCEEEEEeCCCHHH
Confidence            578999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (372)
                      +++++|++++|++++|++|.++.+++.++++++++++++++.+..+.+....  .....+.+...      ... .....
T Consensus       528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~~------~~~-~~~~~  598 (1304)
T 2vsq_A          528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--YTGTTLFIDDQ------TRF-EEQAS  598 (1304)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--CCSEEEESSCG------GGG-GSCSS
T ss_pred             HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--CCCcEEEeccc------ccc-ccccC
Confidence            9999999999999999999999999999999999999999875432211000  00011111100      000 00111


Q ss_pred             ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (372)
Q Consensus       162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  241 (372)
                      .......++++|+|+|||||||+||||+++|+++.+. ......+++.++|+++...|++|..+.+ .++.+++.|++++
T Consensus       599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~  676 (1304)
T 2vsq_A          599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI  676 (1304)
T ss_dssp             CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence            1223456789999999999999999999999999865 4445567888999999999999998885 6899999999999


Q ss_pred             EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (372)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~  318 (372)
                      +.+.   .++..+++.          ++++++|+++++|+++..+.+..           ...++++|.+++|||+++++
T Consensus       677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~  735 (1304)
T 2vsq_A          677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP  735 (1304)
T ss_dssp             ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred             ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence            9985   678888888          78899999999999999987641           12457899999999999999


Q ss_pred             HHHHHHHHhC-CccccccccccccccccCCC----CCCCCCCcccccCCCceEEEeecC
Q 017382          319 VMQQWETITG-HRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       319 ~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~----~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.|.+.++ .+++|.||+||+++.++...    .......++|+|++|++++|+|.+
T Consensus       736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~  794 (1304)
T 2vsq_A          736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQ  794 (1304)
T ss_dssp             HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTT
T ss_pred             HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCC
Confidence            9999998884 68999999999987654221    123345789999999999999964

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.96  E-value=7.1e-30  Score=235.73  Aligned_cols=179  Identities=19%  Similarity=0.251  Sum_probs=153.8

Q ss_pred             CCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCch
Q 017382          169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV  248 (372)
Q Consensus       169 ~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~  248 (372)
                      .+++++|+|||||||.||||++||+++.+++......++++++|++++++|++|++|+. .++.++..|+++++.++.. 
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~-  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA-  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS-
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc-
Confidence            47899999999999999999999999999999999999999999999999999999996 5778899999998876431 


Q ss_pred             hHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC
Q 017382          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (372)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~  328 (372)
                       ..++.          ++++++|++.++|+++..+++...         ...++++||.+++||+++++++.+++.+ ++
T Consensus       114 -~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~  172 (358)
T 4gs5_A          114 -NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LA  172 (358)
T ss_dssp             -CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS
T ss_pred             -cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cC
Confidence             12233          889999999999999999987532         2347899999999999999999999986 59


Q ss_pred             CccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382          329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       329 ~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      .+++|.||+||++..++.........+++|.|.||+++++.+
T Consensus       173 ~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~  214 (358)
T 4gs5_A          173 MPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE  214 (358)
T ss_dssp             SCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred             ceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence            999999999999876664444456678899999999998754

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=1.3e-27  Score=221.85  Aligned_cols=180  Identities=18%  Similarity=0.197  Sum_probs=147.7

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHHcCceEEE
Q 017382          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF  242 (372)
Q Consensus       167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~~l~~G~~~~~  242 (372)
                      ..++++++|+|||||||.||+|.++|+++...+....   ..+++.++|++++.+|+ +|..++.. .+.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence            3678899999999999999999999999998887543   45577899999999999 99999864 555688898 667


Q ss_pred             cCCCchh-----------------------HHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382          243 MPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (372)
Q Consensus       243 ~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  299 (372)
                      ...+++.                       .+++.          ++++++|++.++|+++..|++..        ....
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~--------~~~~  227 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRP--------EVVL  227 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCH--------HHHH
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhh--------hhhc
Confidence            7777777                       55556          78899999999999999998762        2233


Q ss_pred             hhccCceEEEecCCCCCHHHHHHHH-HHh-CCccccccccccccccccCCCCCCCCCCccccc------CCCceEEEeec
Q 017382          300 SAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNP------LPGVQVSMILL  371 (372)
Q Consensus       300 ~~l~~lr~v~~gG~~~~~~~~~~~~-~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p------~~g~~i~Ivd~  371 (372)
                      .+++++|.+++||+++++++.+.+. +.| +++++|.||+||+++++.....     .++|+|      +|+++++|+|+
T Consensus       228 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~  302 (369)
T 3hgu_A          228 QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDS  302 (369)
T ss_dssp             HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECT
T ss_pred             cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECC
Confidence            5678999999999999999999999 899 8999999999999866542211     158999      99999999997

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.94  E-value=5e-27  Score=222.75  Aligned_cols=183  Identities=16%  Similarity=0.152  Sum_probs=151.5

Q ss_pred             CCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh---hcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCC
Q 017382          170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF  246 (372)
Q Consensus       170 ~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~  246 (372)
                      +++++|+|||||||.||+|+++|+++...+.....   .+++.++|++++..|++|..+.+..++.++..|+++++.+.+
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  165 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG  165 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence            78999999999999999999999999877666533   447889999999999987766666678889999999999999


Q ss_pred             chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHH
Q 017382          247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI  326 (372)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~  326 (372)
                      ++..+++.          ++++++|+++++|+++..+++......      ....++++|.+++||+++++++.+.|.+.
T Consensus       166 ~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~  229 (436)
T 3qov_A          166 NSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEG------IDPRETTLKTLVIGAEPHTDEQRRKIERM  229 (436)
T ss_dssp             CHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTT------CCTTSSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred             CHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcC------CCcccCCccEEEEeCCcCCHHHHHHHHHH
Confidence            99999998          788999999999999999988633211      11137899999999999999999999999


Q ss_pred             hCCcccccccccccccc-ccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          327 TGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       327 ~~~~l~~~YG~tE~~~~-~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      ||++++|.||+||+++. ......   .....|.|.++++++|+|+
T Consensus       230 ~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~  272 (436)
T 3qov_A          230 LNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDP  272 (436)
T ss_dssp             HTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECT
T ss_pred             hCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEEC
Confidence            99999999999999543 322111   1223677888999999994

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.93  E-value=9.9e-26  Score=213.90  Aligned_cols=186  Identities=18%  Similarity=0.067  Sum_probs=150.1

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHHcCceEEE
Q 017382          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF  242 (372)
Q Consensus       167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~~l~~G~~~~~  242 (372)
                      ..++++++|+|||||||.||+|++||+++...+....   ..++++++|++++..|+ .|..++. .++.++..|+++++
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~  165 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVIP  165 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEEC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEEe
Confidence            3568899999999999999999999999887665443   35678899999999999 6777764 57888999999999


Q ss_pred             cCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHH
Q 017382          243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (372)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~  322 (372)
                      .+.++++.+++.          ++++++|+++++|+++..+++......      ....++++|.+++||+++++++.+.
T Consensus       166 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~  229 (437)
T 2y27_A          166 FGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQG------LDPVQSSLRIGIFGAEPWTNDMRVA  229 (437)
T ss_dssp             CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred             CCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcC------CCcccCCeeEEEEcCccCCHHHHHH
Confidence            998999999998          788899999999999999987632111      0113589999999999999999999


Q ss_pred             HHHHhCCccccccccccc-cc-cccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          323 WETITGHRLLERYGMTEF-VM-AISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       323 ~~~~~~~~l~~~YG~tE~-~~-~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +.+.||+++++.||+||+ +. +......   .....+.|.++++++|+|+|
T Consensus       230 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~  278 (437)
T 2y27_A          230 IEQRMGIDAVDIYGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPE  278 (437)
T ss_dssp             HHHHHTSEEEEEEEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTT
T ss_pred             HHHHHCcCEEecCCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCC
Confidence            999999999999999997 43 3322221   11125677899999999953

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.93  E-value=9.5e-26  Score=214.41  Aligned_cols=185  Identities=19%  Similarity=0.119  Sum_probs=149.0

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh---hcccCCCCeEEEecCch-hHHHHHHHHHHHHHcCceEEE
Q 017382          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVEF  242 (372)
Q Consensus       167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~-~~~~~~~~~~~~l~~G~~~~~  242 (372)
                      ..++++++|+|||||||.||+|+++|+++.........   .+++.++|++++..|++ |..++. .++.++..|+++++
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVVP  167 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEEC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEEE
Confidence            45688999999999999999999999998876554433   56788999999999994 666664 57888999999999


Q ss_pred             cCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHH
Q 017382          243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (372)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~  322 (372)
                      .+.++++.+++.          ++++++|+++++|+++..|++......      ....++++|.+++||+++++++.+.
T Consensus       168 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~  231 (443)
T 2y4o_A          168 MSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQG------MDPAESSLKIGIFGAEPWTQALRNE  231 (443)
T ss_dssp             CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred             CCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcC------CCcccCCceEEEECCCcCCHHHHHH
Confidence            999999999988          788899999999999999987632111      0113589999999999999999999


Q ss_pred             HHHHhCCccccccccccccc--cccCCCCCCCCCCcccccCCCceEEEeec
Q 017382          323 WETITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVSMILL  371 (372)
Q Consensus       323 ~~~~~~~~l~~~YG~tE~~~--~~~~~~~~~~~~~svG~p~~g~~i~Ivd~  371 (372)
                      |.+.||+++++.||+||+++  +......  ...+ .+.|.++++++|+|+
T Consensus       232 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~--~~~g-~~~~~~~~~~~i~d~  279 (443)
T 2y4o_A          232 VETRVGIDALDIYGLSEVMGPGVACECVE--TKDG-PVIWEDHFYPEIIDP  279 (443)
T ss_dssp             HHHHHTCEEEEEEEETTTTEEEEEEECTT--TCCS-EEECTTTEEEEEECT
T ss_pred             HHHHhCcCEEeccCchhhcCCeEEeccCC--CCCc-eEEccCCeEEEEEcC
Confidence            99999999999999999743  2222211  1112 566778999999995

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=91.43  E-value=0.42  Score=45.92  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             CCCCCcEEEEecCCCC-CCCceeeeehhhHHH
Q 017382          167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA  197 (372)
Q Consensus       167 ~~~~~~a~i~~TSGtT-G~pK~v~~s~~~l~~  197 (372)
                      ..++.+.+...||||| |++|-+.+|...+..
T Consensus        90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~  121 (581)
T 4eql_A           90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN  121 (581)
T ss_dssp             TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence            4567778999999999 789999999998754

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.00  E-value=1.6  Score=40.23  Aligned_cols=90  Identities=10%  Similarity=0.154  Sum_probs=71.2

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCC
Q 017382           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY  102 (372)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~  102 (372)
                      ..+|.+.+...+..+++.+..                 .|+.++|++...++.+  ...+...++++..|+.+++.+.. 
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-  169 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-  169 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-
T ss_pred             EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-
Confidence            368999998888777777766                 4899999999988863  33345567888999999887664 


Q ss_pred             CHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382          103 PESELLHVMHDSDISMVLSTEDYREVLQNV  132 (372)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (372)
                      +.+.+...+++.++.+++..+.....+.+.
T Consensus       170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  199 (437)
T 2y27_A          170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADE  199 (437)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence            788889999999999999988777665543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=90.78  E-value=2.2  Score=39.30  Aligned_cols=90  Identities=17%  Similarity=0.078  Sum_probs=72.6

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCC
Q 017382           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY  102 (372)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~  102 (372)
                      ..+|.+.+...+..++..+..                 .++.++|++...++-+  ...+...++++..|+.+++.+.. 
T Consensus       104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-  165 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-  165 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred             EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence            468999998888888888877                 4899999999988754  44455678889999998887655 


Q ss_pred             CHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382          103 PESELLHVMHDSDISMVLSTEDYREVLQNV  132 (372)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (372)
                      .++.+...+++.++.+++..+.....+.+.
T Consensus       166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  195 (436)
T 3qov_A          166 NSKRQIKFISDFKTTALHAIPSYAIRLAEV  195 (436)
T ss_dssp             CHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence            678888999999999999998877666544

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=90.67  E-value=1.8  Score=40.01  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCC
Q 017382           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY  102 (372)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~  102 (372)
                      ..+|.+.+...+..+++.+..                 .|+.++|++...++.+  ...+...++++..|+.+++.+.. 
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-  171 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-  171 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred             EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-
Confidence            358999998888877777766                 4899999999988864  33445678888899998888765 


Q ss_pred             CHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382          103 PESELLHVMHDSDISMVLSTEDYREVLQNV  132 (372)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (372)
                      ..+.+...+++.++.+++..+.....+.+.
T Consensus       172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  201 (443)
T 2y4o_A          172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDE  201 (443)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence            788888999999999999888776655543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.38  E-value=9.2  Score=35.73  Aligned_cols=99  Identities=11%  Similarity=0.051  Sum_probs=73.7

Q ss_pred             cCCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH-H
Q 017382           13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-V   82 (372)
Q Consensus        13 ~~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~-~   82 (372)
                      ..++.+|++.         .+..+|.+.+...+......+                    ++.++|++...+|-...+ +
T Consensus       160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--------------------GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--------------------CCCTTCEEEECSCTTSHHHH
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--------------------CCCccCEEEEeCcHHHHHHH
Confidence            3567777764         124689998887766655433                    788999999988876433 3


Q ss_pred             HHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (372)
Q Consensus        83 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (372)
                      ..+++++..|+..+..+. .+++.+...+++.++.++...+.....+.+.
T Consensus       220 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  268 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQ  268 (501)
T ss_dssp             HHHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence            346778888998888764 6788899999999999999998877766544

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=82.77  E-value=15  Score=34.39  Aligned_cols=97  Identities=14%  Similarity=0.004  Sum_probs=71.1

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  244 (372)
                      .|+.+|++.         ..-.+|++.+...+..+...+   +++++|++...++-+...-  ..+++++..|+..+..+
T Consensus        19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~Ga~~vpl~   87 (509)
T 3ivr_A           19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI--ELIGAVALIGAILLPVN   87 (509)
T ss_dssp             STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH--HHHHHHHHTTCEEEECC
T ss_pred             CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH--HHHHHHHHhCCEEEecC
Confidence            467777764         125799999988777776555   7889999999988765543  35888999999999887


Q ss_pred             CC-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382          245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (372)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  285 (372)
                      .. +.+.+...          ++..++..++..+.....+.+
T Consensus        88 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~~  119 (509)
T 3ivr_A           88 YRLNADEIAFV----------LGDGAPSVVVAGTDYRDIVAG  119 (509)
T ss_dssp             TTSCHHHHHHH----------HHHHCEEEEEECSTTHHHHHH
T ss_pred             CCCCHHHHHHH----------HHhcCceEEEECcchhhhHHh
Confidence            64 45555444          667789999988877666443

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=82.60  E-value=12  Score=35.32  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH-
Q 017382           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA-   83 (372)
Q Consensus        14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~-   83 (372)
                      .|+.+|++.         .+..+|.+.+...+......+                    ++.++|++...+|-...+-. 
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~  239 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--------------------WLDHSTVYLAALPMAHNYPLS  239 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--------------------CCCCCCEEEEeecccccchhh
Confidence            456677663         124689998877766554433                    77889999988887644433 


Q ss_pred             --HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382           84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (372)
Q Consensus        84 --~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (372)
                        .+++.+..|+..+..+. ..++.+...+++.++.++...+.....+.+.
T Consensus       240 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  289 (539)
T 1mdb_A          240 SPGVLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDA  289 (539)
T ss_dssp             SSHHHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence              47888889998887654 5788899999999999999988776665443

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=81.74  E-value=14  Score=35.04  Aligned_cols=105  Identities=12%  Similarity=0.022  Sum_probs=73.4

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  244 (372)
                      .++.+|++....+..+ -..-.+|+..+...+..+...+   +++++|++...++-+...-  ..+++++..|+..+.++
T Consensus        32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~  108 (549)
T 3g7s_A           32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV--MTIYALWRVAATPVPIN  108 (549)
T ss_dssp             HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEECC
T ss_pred             CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHHHHhCCEEEccC
Confidence            4677887765422111 1125689999888777766544   7889999999988765543  35888999999999887


Q ss_pred             CC-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382          245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (372)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  285 (372)
                      .. ..+.+...          ++..++..++..+.....+..
T Consensus       109 ~~~~~~~l~~i----------l~~~~~~~~i~~~~~~~~~~~  140 (549)
T 3g7s_A          109 PMYKSFELEHI----------LNDSEATTLVVHSMLYENFKP  140 (549)
T ss_dssp             TTCCHHHHHHH----------HHHTTCSEEEEEGGGHHHHHH
T ss_pred             CCCCHHHHHHH----------HHhcCCCEEEEChHHHHHHHH
Confidence            64 45555444          667789998888877766544

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=81.16  E-value=16  Score=34.56  Aligned_cols=97  Identities=12%  Similarity=0.101  Sum_probs=71.9

Q ss_pred             CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH-
Q 017382           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA-   83 (372)
Q Consensus        14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~-   83 (372)
                      .++.+|++.         .+..+|.+.+...+...+..+                    ++.++|++...+|....+-. 
T Consensus       189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~  248 (544)
T 3o83_A          189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--------------------GLNSNTRLLCALPAPHNFMLS  248 (544)
T ss_dssp             CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred             CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--------------------CCCCCCeEEEecCcceEeecc
Confidence            456777764         124699999887776665443                    78899999999887654433 


Q ss_pred             --HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382           84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN  131 (372)
Q Consensus        84 --~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  131 (372)
                        .+++.+..|+..+..+. ..+..+...+++.++.++...+.....+.+
T Consensus       249 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  297 (544)
T 3o83_A          249 SPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE  297 (544)
T ss_dssp             SSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred             hHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence              36788888988887754 477888889999999999998876655543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=80.07  E-value=13  Score=35.20  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=70.2

Q ss_pred             CceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHH--HH
Q 017382           16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV--AG   84 (372)
Q Consensus        16 ~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~--~~   84 (372)
                      +.+|++.         .+..+|.+.+...+......+..                 .++.++|++...+|-...+-  ..
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~  254 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT  254 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence            7777764         13469999887766555443322                 37889999998888764433  23


Q ss_pred             HHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382           85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN  131 (372)
Q Consensus        85 ~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  131 (372)
                      +++.+ .|+..+..+ ...++.+...+++.++.+++..+.....+.+
T Consensus       255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            56666 898888776 4678889999999999999998877666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	8e-54
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-41
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-33
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	6e-31
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-27
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-26
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-24

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  185 bits (471), Expect = 8e-54
 Identities = 71/385 (18%), Positives = 117/385 (30%), Gaps = 63/385 (16%)

Query: 16  DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           D  AI       +  K  SY +L     R ++ L    +K                  G 
Sbjct: 87  DRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIK-----------------KGD 129

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            + I      E    +L     G +   +   +    +   + DS   +V++ ++     
Sbjct: 130 VVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAG 189

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFD----------------------QSQAEKMDGQ 167
           +++  K     +L  P         V                         S   + +  
Sbjct: 190 RSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM 249

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAWEYTSADQFLHCLPLHHVHGL 226
             EDP  I+YTSG+TGKPKGV+HT               ++Y   D +     +  V G 
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGH 309

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
              L  PL  GAT              R  +            +      PT    L+  
Sbjct: 310 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVV------DKHQVNILYTAPTAIRALMAE 363

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH---RLLERYGMTEFVMA 343
            +        +S      LR++      +     + +    G     +++ +  TE    
Sbjct: 364 GDKAIEGTDRSS------LRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 417

Query: 344 ISNPLRGA--RKAGTVGNPLPGVQV 366
           +  PL GA   KAG+   P  GVQ 
Sbjct: 418 MITPLPGAIELKAGSATRPFFGVQP 442

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (382), Expect = 2e-41
 Identities = 59/385 (15%), Positives = 117/385 (30%), Gaps = 62/385 (16%)

Query: 16  DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           +  AI           S +Y +L     +++ +L  +                +    G 
Sbjct: 74  NKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGD 117

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            + +      E +  +L     G I   +   +  + L   ++D D  +V++T++     
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177

Query: 130 QNVASK---------------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR 168
           + + +K                     +           ++   T               
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVD 237

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
            EDP  ++YTSG+TG PKGV H+    +   +  +   ++    D F     +  + G  
Sbjct: 238 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 297

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
             +  PL  G              + R+ +            +T F   PT    L +  
Sbjct: 298 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDII------DEHKVTQFYVAPTALRLLKRAG 351

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR---LLERYGMTEFVMAI 344
           ++        S      LR +      +   V + +    G     +++ Y  TE    +
Sbjct: 352 DSYIENHSLKS------LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 405

Query: 345 SNPLRGA---RKAGTVGNPLPGVQV 366
             PL G     K G+   P  G+  
Sbjct: 406 VTPLAGGVTPMKPGSASFPFFGIDA 430

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  128 bits (321), Expect = 2e-33
 Identities = 61/370 (16%), Positives = 129/370 (34%), Gaps = 55/370 (14%)

Query: 16  DSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71
               +      +    +Y ++   A R+   L +  +                   G R+
Sbjct: 26  RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGV-----------------GDRV 68

Query: 72  GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131
             +    F  +         G +           E+ ++++ ++  ++L   +   +++ 
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIVYTSGTTGKPKGVV 189
           +  +       +            ++++  E+ D  R        + YT+GTTG PKGVV
Sbjct: 129 IRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVV 188

Query: 190 HTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           ++H+++   +    L +    +  D  L  +P+ HV+       A L     V   P+  
Sbjct: 189 YSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD 248

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              + + +            E +T   GVPT++  L    E+    L        K LR 
Sbjct: 249 PASLVELFDG----------EGVTFTAGVPTVWLALADYLESTGHRL--------KTLRR 290

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-----------PLRGARKAGT 356
           ++ G SA P  ++ ++E + G  + + YG+TE    +                       
Sbjct: 291 LVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAK 349

Query: 357 VGNPLPGVQV 366
            G P+P V++
Sbjct: 350 TGLPIPLVRL 359

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  121 bits (303), Expect = 6e-31
 Identities = 73/383 (19%), Positives = 136/383 (35%), Gaps = 53/383 (13%)

Query: 2   EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
           E    A K+ ++   ++A      + + +Y +    ++R++  +    L T         
Sbjct: 21  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 71

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                     RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V
Sbjct: 72  --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123

Query: 120 LSTEDYREVLQNVASK--SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ---------- 167
             ++   + + NV  K     K  ++    +     +++    +    G           
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 183

Query: 168 -RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHV 223
            R +  ALI+ +SG+TG PKGV   H++   +     +     +       L  +P HH 
Sbjct: 184 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 243

Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
            G+F   L  L  G  V  M +F      +  ++    +             VPT+++  
Sbjct: 244 FGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS----------ALLVPTLFSFF 292

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
            +       +L       +    +   G+           +      + + YG+TE   A
Sbjct: 293 AKSTLIDKYDL-------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345

Query: 344 ISNPLRGARKAGTVGNPLPGVQV 366
           I     G  K G VG  +P  + 
Sbjct: 346 ILITPEGDDKPGAVGKVVPFFEA 368

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 55/353 (15%), Positives = 114/353 (32%), Gaps = 47/353 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           ++VAI  + +  +Y +L   A +++ +     +                      +GI+ 
Sbjct: 38  NNVAIVCENEQLTYHELNVKANQLARIFIEKGIGK-----------------DTLVGIMM 80

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +    ++ N+   
Sbjct: 81  EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-- 138

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                        +  E T+  +         +  D A ++YTSGTTG PKG +  HK I
Sbjct: 139 -------FNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 191

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
                    +   T  D+      +     ++   +A L   +    +            
Sbjct: 192 SNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK----------- 240

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                +N     E       +  +              + +          L+  GS+  
Sbjct: 241 ---DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQ-------TLITAGSATS 290

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSM 368
           P  V +  E +T          T               +  +G P+   Q+ +
Sbjct: 291 PSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYI 343

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  107 bits (267), Expect = 3e-26
 Identities = 55/362 (15%), Positives = 116/362 (32%), Gaps = 42/362 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +AI      +SY +L + A R+++      ++                    R+ +  
Sbjct: 40  DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               EF   +   +  G + V    S+  SE+ +    ++ +  +  + Y        ++
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 136 SGAKFSLIPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
                        V+ E   F       ++  K+   +  D A +  + G+TG  K +  
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR 202

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL-APLYAGATVEFMPKFSVR 249
           TH      ++   E      +  +L  LP+ H + L +  +   LYAG  V   P  S  
Sbjct: 203 THDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
             +                            T L+     +  +  ++       L+++ 
Sbjct: 263 DAFPLIEREKV------------------TITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVSM 368
            G +       ++ + + G  L + +GM E ++              T G P+     S 
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR 364

Query: 369 IL 370
           + 
Sbjct: 365 VW 366

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  101 bits (252), Expect = 3e-24
 Identities = 63/357 (17%), Positives = 128/357 (35%), Gaps = 38/357 (10%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
             ++A+ A     ++ +L +    +++ L ++ L+                    R+ +V
Sbjct: 18  HCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAVV 60

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
           A  S + V  +L     G +   L      +EL  ++   +++  +     +       S
Sbjct: 61  APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS 120

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            SGA+   I  + ++  +   +      +   +    PA I YTSGTTG PK  +   ++
Sbjct: 121 GSGAR---IIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177

Query: 195 IDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
            +++V  ++      +   +  L  +PL+HV G F  L+A L    T   + +F      
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           Q  ++          E +T+    PT    L        + L+  S      LR +    
Sbjct: 238 QLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFAG 281

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
           + +P  V++          +  YG TE + ++             G       V + 
Sbjct: 282 ATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIG 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	89.28
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.54
d2ayia1	406	Aminopeptidase T {Thermus thermophilus [TaxId: 274	81.28
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	80.87
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	80.4

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=6.8e-50  Score=394.67  Aligned_cols=335  Identities=19%  Similarity=0.220  Sum_probs=265.4

Q ss_pred             HHHHHhCCcCCCceEEEeC------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382            5 KAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (372)
Q Consensus         5 ~~l~~~a~~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~   78 (372)
                      +.+.+|++.+||++|++++      .+++||+||.+++.++|+.|++                 +|+++||+|+++++|+
T Consensus        76 n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-----------------~Gv~~Gd~V~i~~~n~  138 (643)
T d1pg4a_          76 NCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMPMV  138 (643)
T ss_dssp             HHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECCSS
T ss_pred             HHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEecccc
Confidence            3455788889999999963      2689999999999999999999                 5999999999999999


Q ss_pred             HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC----CcccccCC
Q 017382           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLIPP  145 (372)
Q Consensus        79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~~~  145 (372)
                      ++++++++||+++|++++|+++.++++++.+++++++++++|+++..         ............    ..++.+..
T Consensus       139 ~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~  218 (643)
T d1pg4a_         139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR  218 (643)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECS
T ss_pred             hHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEecc
Confidence            99999999999999999999999999999999999999999997642         222332222111    11111111


Q ss_pred             CCCCCCCccc---------ccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHH-HHhhcccCCCCeEE
Q 017382          146 VPNVSSETTV---------FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFL  215 (372)
Q Consensus       146 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l  215 (372)
                      ..........         .............++++++|+|||||||.||||++||++++..... ....+++.++|+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~  298 (643)
T d1pg4a_         219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW  298 (643)
T ss_dssp             SCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCcccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            1111000000         0011112233446789999999999999999999999997765444 45567899999999


Q ss_pred             EecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhcc
Q 017382          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (372)
Q Consensus       216 ~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  291 (372)
                      +..|++|++++...++.+|+.|+++++.+.    +++..+++.          ++++++|+++++|+++..+++....  
T Consensus       299 ~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~l~~l~~~~~~--  366 (643)
T d1pg4a_         299 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK--  366 (643)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG--
T ss_pred             EeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHHCCcEEEehHHHHHHHHhCcch--
Confidence            999999999987778889999999999764    478889988          7889999999999999999876321  


Q ss_pred             HHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCC--CCCCCCCcccccCCCceE
Q 017382          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQV  366 (372)
Q Consensus       292 ~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~--~~~~~~~svG~p~~g~~i  366 (372)
                          .....++++||.+++||+++++++++.+.+.+|   +++++.||+||++++++...  ....+.+++|+|++|+++
T Consensus       367 ----~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v  442 (643)
T d1pg4a_         367 ----AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP  442 (643)
T ss_dssp             ----GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCE
T ss_pred             ----hccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEE
Confidence                234568999999999999999999999999984   67999999999987665433  234577999999999999


Q ss_pred             EEeecC
Q 017382          367 SMILLL  372 (372)
Q Consensus       367 ~Ivd~d  372 (372)
                      +|+|.+
T Consensus       443 ~ivd~~  448 (643)
T d1pg4a_         443 ALVDNE  448 (643)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999975

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-48  Score=381.86  Aligned_cols=337  Identities=17%  Similarity=0.235  Sum_probs=264.9

Q ss_pred             HHHHHHhCCcCCCceEEEeC------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCC
Q 017382            4 FKAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (372)
Q Consensus         4 ~~~l~~~a~~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n   77 (372)
                      ++.+.+|++++||++|++++      .+++||+||.+++.++|+.|+..                +|+++||+|+++++|
T Consensus        62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~----------------~Gv~~Gd~V~i~~~n  125 (640)
T d1ry2a_          62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGDTVAVYMPM  125 (640)
T ss_dssp             HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT----------------SCCCTTCEEEECCCS
T ss_pred             HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence            45677899999999999963      36899999999999999999742                599999999999999


Q ss_pred             CHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcCCcc--cccCCC
Q 017382           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGAKF--SLIPPV  146 (372)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~--~~~~~~  146 (372)
                      +++++++++||+++|++++|+++.++++++.++++++++++++++...         ...+.+.........  ......
T Consensus       126 ~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (640)
T d1ry2a_         126 VPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT  205 (640)
T ss_dssp             SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccc
Confidence            999999999999999999999999999999999999999999998642         233333322221111  011100


Q ss_pred             CC--CCCC--cc------cccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH-hhcccCCCCeEE
Q 017382          147 PN--VSSE--TT------VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFL  215 (372)
Q Consensus       147 ~~--~~~~--~~------~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l  215 (372)
                      ..  ....  ..      ..............++++++|+|||||||.||||+++|++++.+..... ..+.+.++|+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l  285 (640)
T d1ry2a_         206 NNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF  285 (640)
T ss_dssp             CCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCccccee
Confidence            00  0000  00      0000111122334568999999999999999999999999887665554 466889999999


Q ss_pred             EecCchhHHHHHHHHHHHHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhcc
Q 017382          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (372)
Q Consensus       216 ~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  291 (372)
                      +.+|++|+.+....++.+|..|+++++.+..    ++..+++.          ++++++|+++++|++++.+.+....  
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--  353 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS--  353 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT--
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHhCccEEEcChHHHHHHHhcccc--
Confidence            9999999999877788899999999988753    78889988          8889999999999999988765321  


Q ss_pred             HHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCC---CCCCCCCcccccCCCce
Q 017382          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQ  365 (372)
Q Consensus       292 ~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~---~~~~~~~svG~p~~g~~  365 (372)
                          .....++++||.+++||+++++++++.|.+.+|   ..+++.||+||++.......   ....+.+++|+|+||++
T Consensus       354 ----~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~  429 (640)
T d1ry2a_         354 ----YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGID  429 (640)
T ss_dssp             ----SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCC
T ss_pred             ----ccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCce
Confidence                224568999999999999999999999999886   46899999999987654322   23457799999999999


Q ss_pred             EEEeecC
Q 017382          366 VSMILLL  372 (372)
Q Consensus       366 i~Ivd~d  372 (372)
                      ++|+|++
T Consensus       430 ~~i~d~~  436 (640)
T d1ry2a_         430 AVVLDPN  436 (640)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            9999964

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-46  Score=364.99  Aligned_cols=336  Identities=17%  Similarity=0.231  Sum_probs=270.3

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeC----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      +|+++.|.++++++||++|+++.    .+++||+||.+++.++|++|.+                 .|+++||+|+++++
T Consensus        11 ~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-----------------~Gv~~gd~V~i~~~   73 (534)
T d1v25a_          11 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-----------------LGVGVGDRVATLGF   73 (534)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-----------------CCcCCCCEEEEEeC
Confidence            57999999999999999999873    2579999999999999999999                 49999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcc--
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT--  154 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  154 (372)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++.++++....................+...........  
T Consensus        74 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (534)
T d1v25a_          74 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY  153 (534)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH
T ss_pred             CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccc
Confidence            999999999999999999999999999999999999999999999999888887776554422222111111111000  


Q ss_pred             cccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh--hcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382          155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (372)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~--~~~~~~~d~~l~~~pl~~~~~~~~~~~~  232 (372)
                      ..............++++++|+|||||||.||+|+++|.+++........  .+.....|++++.+|++|.+++...+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~  233 (534)
T d1v25a_         154 EEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA  233 (534)
T ss_dssp             HHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHH
T ss_pred             cccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcccccccee
Confidence            00111112233456788999999999999999999999999876654433  4456789999999999999999765555


Q ss_pred             HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (372)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG  312 (372)
                      .+..|.++++.+.+++..++..          +.++++|++.++|+++..+...        ......++++||.+++||
T Consensus       234 ~~~g~~~v~~~~~~~~~~~~~~----------~~~~~vt~~~~~p~~~~~~~~~--------~~~~~~~~~~lr~~~~gG  295 (534)
T d1v25a_         234 TLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADY--------LESTGHRLKTLRRLVVGG  295 (534)
T ss_dssp             HHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHH--------HHHHTCCCSSCCEEEECS
T ss_pred             eeecceeeeccccccccccchh----------hhhccccccccCchhhhhhhhh--------hccccccccceeEEEEec
Confidence            4555555555567899998888          7889999999999999998876        334566899999999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccCCCCC-----------CCCCCcccccCCCceEEEeecC
Q 017382          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++++.+.|++ ++.++++.||+||++.+++.....           ....+++|+|+||++++|+|+|
T Consensus       296 ~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~  365 (534)
T d1v25a_         296 SAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE  365 (534)
T ss_dssp             SCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT
T ss_pred             CCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCC
Confidence            9999999999875 599999999999998776532211           1235789999999999999975

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6.5e-46  Score=359.61  Aligned_cols=335  Identities=21%  Similarity=0.267  Sum_probs=266.4

Q ss_pred             HHHHHHHHhCCcC---CCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382            2 EVFKAAYKKGSMA---RDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (372)
Q Consensus         2 ~~~~~l~~~a~~~---~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~   76 (372)
                      |+.+.|.+++++|   |+.+|+++.  ++++||+||.+++.++|++|++                 +|+++||+|+++++
T Consensus        18 t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-----------------~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_          18 TAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCSE   80 (541)
T ss_dssp             CHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECS
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-----------------cCcCCCCEEEEEeC
Confidence            3555666666555   888899875  4689999999999999999999                 59999999999999


Q ss_pred             CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcc--cccCCCCCCCCCcc
Q 017382           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPNVSSETT  154 (372)
Q Consensus        77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  154 (372)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.++....+...  ..+...........
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS  160 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEE
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccch
Confidence            9999999999999999999999999999999999999999999999998888888776655332  22222111111110


Q ss_pred             cc-----------cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCc
Q 017382          155 VF-----------DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPL  220 (372)
Q Consensus       155 ~~-----------~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl  220 (372)
                      ..           ......+.....++++++|+|||||||.||+|++||++++..........   .+...+++++++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (541)
T d1lcia_         161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF  240 (541)
T ss_dssp             HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred             hhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccc
Confidence            00           00111122334568899999999999999999999999988777665433   56789999999999


Q ss_pred             hhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhh
Q 017382          221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (372)
Q Consensus       221 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  300 (372)
                      +|..+.. ..+..+..|+..+.....+....+..          +..+++|.+..+|.++..+.+...        ....
T Consensus       241 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~~--------~~~~  301 (541)
T d1lcia_         241 HHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDKY  301 (541)
T ss_dssp             TSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEECCHHHHHHHHHCSC--------GGGS
T ss_pred             ccccccc-ccccccccccccccccccccchhHHH----------HhhhhccccccCcccccccccccc--------cccc
Confidence            9999986 46677888889999888888888888          778899999999999999987633        3445


Q ss_pred             hccCceEEEecCCCCCHHHHHHHHHHhCC-ccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382          301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       301 ~l~~lr~v~~gG~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      +++++|.+++||++++++..+.+.+.++. .+++.||+||+++.++.......+.+++|+|+||++++|+|.|
T Consensus       302 ~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d  374 (541)
T d1lcia_         302 DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLD  374 (541)
T ss_dssp             CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTT
T ss_pred             ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECC
Confidence            78999999999999999999999999865 6899999999998777666667788999999999999999864

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.8e-43  Score=340.49  Aligned_cols=333  Identities=18%  Similarity=0.215  Sum_probs=266.4

Q ss_pred             HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~   81 (372)
                      |+.+.|.++|+++||++|++++++++||+||.+++.++|+.|.+                 +|+++||+|+++++|++++
T Consensus        26 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~Gv~~gd~V~i~~~n~~~~   88 (536)
T d1mdba_          26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKEF   88 (536)
T ss_dssp             CHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHHH
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHH-----------------cCcCCcCEEEEEeCCCHHH
Confidence            68999999999999999999999999999999999999999998                 5999999999999999999


Q ss_pred             HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHH-----HHHHHHhhcCCcccccCCCCCCCCCcccc
Q 017382           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE-----VLQNVASKSGAKFSLIPPVPNVSSETTVF  156 (372)
Q Consensus        82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (372)
                      +++++||+++|++++|++++++.+++.++++.++++++++++....     ...............+.. ..........
T Consensus        89 ~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  167 (536)
T d1mdba_          89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVA-GEAEEFLPLE  167 (536)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEE-SCCTTSEEGG
T ss_pred             HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeee-eccccccchh
Confidence            9999999999999999999999999999999999999999864321     111111111111000000 0000001111


Q ss_pred             c-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHH-HHHHH
Q 017382          157 D-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA-LLAPL  234 (372)
Q Consensus       157 ~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~-~~~~l  234 (372)
                      + .......+...++|+++|+|||||||.||+|++||+++..++......+.+.++|++++..|++|.+++... ++..+
T Consensus       168 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~  247 (536)
T d1mdba_         168 DLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL  247 (536)
T ss_dssp             GCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred             hcccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccc
Confidence            1 111122345678899999999999999999999999999999999999999999999999999999987533 34445


Q ss_pred             HcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCC
Q 017382          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (372)
Q Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~  314 (372)
                      ..|.+++..+.+++..++..          +++++++.+..+|..+..+...        .......+++++.+++||++
T Consensus       248 ~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gG~~  309 (536)
T d1mdba_         248 YAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDA--------ASSRRDDLSSLQVLQVGGAK  309 (536)
T ss_dssp             HTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHH--------HHHCCCCCTTCCEEEEESSC
T ss_pred             cccccccccCCCCHHHHHHH----------Hhhhccccccccchhhhhhhhh--------ccccccccCcceeEEEeccc
Confidence            56788888888999999988          7889999999999999988765        33445678999999999999


Q ss_pred             CCHHHHHHHHHHhCCcccccccccccccccc-CCCCCCCCCCcccccCCCceEEEee
Q 017382          315 LPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVSMIL  370 (372)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~-~~~~~~~~~~svG~p~~g~~i~Ivd  370 (372)
                      ++++..+++.+.+|......|+.+|.+.... .........+++|+|+++....+++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~  366 (536)
T d1mdba_         310 FSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVW  366 (536)
T ss_dssp             CCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEE
T ss_pred             cccccccchhhccCceeeeccccccccccccccccccccccCCcccCCCCcceEEEE
Confidence            9999999999999999999999999775554 3333345668899999765544443

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=5.1e-43  Score=337.23  Aligned_cols=319  Identities=20%  Similarity=0.302  Sum_probs=255.5

Q ss_pred             CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (372)
Q Consensus         1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~   80 (372)
                      +||.+.|.++|+++||++|++++++++||+||.++++++|+.|++                 +|+++||+|+++++|+++
T Consensus        23 ~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~Vai~~~n~~~   85 (514)
T d1amua_          23 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIE-----------------KGIGKDTLVGIMMEKSID   85 (514)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHH
T ss_pred             CcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHH-----------------cCcCCcCEEEEEeCCCHH
Confidence            479999999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (372)
Q Consensus        81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (372)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+......   .........      .......
T Consensus        86 ~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~  156 (514)
T d1amua_          86 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN---GQVEIFEED------TIKIREG  156 (514)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC---SEEEECCCS------TTTTSCC
T ss_pred             HHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc---ccccccccc------ccccccc
Confidence            9999999999999999999999999999999999999999998876654432111   110000000      0001111


Q ss_pred             cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (372)
Q Consensus       161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  240 (372)
                      ........++++++|+|||||||.||+|.+||.++..........+.....|++++..|++|..++. .++.++..|+++
T Consensus       157 ~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~~  235 (514)
T d1amua_         157 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL  235 (514)
T ss_dssp             SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred             ccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccc-cccccccccccc
Confidence            1112234578999999999999999999999999999999999999999999999999999999996 577789999999


Q ss_pred             EEcCCC---chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          241 EFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       241 ~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      ++.+..   +....++.          +..+.++.+..+|......              ...++.+++.+++||+++++
T Consensus       236 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~G~~~~~  291 (514)
T d1amua_         236 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHL--------------DPERILSIQTLITAGSATSP  291 (514)
T ss_dssp             EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTS--------------CTTTCCSCSEEEEESSCCCH
T ss_pred             cccccccccchhhhhhh----------hhhhhcccccceeeecccc--------------cccccccccEEEEecccCCH
Confidence            988753   34445555          6667888888888765432              23478999999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccCC---CCCCCCCCcccccCCCceEEEeecC
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISNP---LRGARKAGTVGNPLPGVQVSMILLL  372 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~~svG~p~~g~~i~Ivd~d  372 (372)
                      ++.+++.+  +..+++.||+||++++++..   .......++.|++.++++++++|++
T Consensus       292 ~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  347 (514)
T d1amua_         292 SLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDEN  347 (514)
T ss_dssp             HHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTT
T ss_pred             HHhhhhcc--ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeeccc
Confidence            99887765  67899999999999776532   2233456788999999999999864

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.2e-40  Score=318.64  Aligned_cols=310  Identities=20%  Similarity=0.245  Sum_probs=252.8

Q ss_pred             HHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382            2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (372)
Q Consensus         2 ~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~   79 (372)
                      |+++.|.++|+++||++|+++.  ++++||+||.+++.++|++|++                 +|+++||+|+++++|++
T Consensus         3 ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~Gv~~gd~V~i~~~n~~   65 (503)
T d3cw9a1           3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-----------------DGLRPQQRVAVVAPNSA   65 (503)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSCH
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-----------------cCcCCCCEEEEEeCCCH
Confidence            6899999999999999999974  5699999999999999999999                 49999999999999999


Q ss_pred             hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccc
Q 017382           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (372)
Q Consensus        80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (372)
                      ++++++|||+++|++++|+++.++++++.+++++++++.+|++................+.+.+.....   ........
T Consensus        66 ~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~  142 (503)
T d3cw9a1          66 DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVR---DGEPYSYG  142 (503)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEE---TTEECCCS
T ss_pred             HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhh---hhcccccC
Confidence            999999999999999999999999999999999999999999876433222222222222222111000   00000111


Q ss_pred             ccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcc--cCCCCeEEEecCchhHHHHHHHHHHHHHcC
Q 017382          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (372)
Q Consensus       160 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G  237 (372)
                      .........++++++++|||||||.||+|.++|.++...+......+.  ....+++++.+|+.|..+.....+.+...+
T Consensus       143 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  222 (503)
T d3cw9a1         143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALD  222 (503)
T ss_dssp             CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTT
T ss_pred             CccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccc
Confidence            112223456789999999999999999999999999998888777654  456689999999998888877778888999


Q ss_pred             ceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (372)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~  317 (372)
                      +.+++.+.+++...+..          +..++++++..+|+.+..+.....      .......+++||.+++||+++++
T Consensus       223 ~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Lr~i~~gG~~~~~  286 (503)
T d3cw9a1         223 GTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAA------HAGSSLKLDSLRHVTFAGATMPD  286 (503)
T ss_dssp             CEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHH------HTCTTCCCTTCCEEEECSSCCCH
T ss_pred             cccccccccChHHhhhh----------hhhceeeccccccccccccccccc------cccccccccceEEEEeccccccc
Confidence            99999999999999988          777899999999999988876532      12234567899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccCC
Q 017382          318 PVMQQWETITGHRLLERYGMTEFVMAISNP  347 (372)
Q Consensus       318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~  347 (372)
                      ++...+...++..+.+.||+||++..+...
T Consensus       287 ~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~  316 (503)
T d3cw9a1         287 AVLETVHQHLPGEKVNIYGTTEAMNSLYMR  316 (503)
T ss_dssp             HHHHHHHHHCCSEEEEEEEETTTEEEEEEE
T ss_pred             cccccccccccccccccccccccceeeeec
Confidence            999999999999999999999998766543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=89.28  E-value=0.93  Score=40.55  Aligned_cols=115  Identities=13%  Similarity=0.075  Sum_probs=79.8

Q ss_pred             EEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC-Cch
Q 017382          173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSV  248 (372)
Q Consensus       173 a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~-~~~  248 (372)
                      +.+.++.+.++    ..+|+..+...+..++..+   +++++|++...++-+-..-  ..+++++..|+..+.++. ++.
T Consensus        35 ~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~--v~~lA~~~~G~i~vpl~~~~~~  108 (541)
T d1lcia_          35 GTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF--MPVLGALFIGVAVAPANDIYNE  108 (541)
T ss_dssp             TCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTH--HHHHHHHHHTCEEEECCTTCCH
T ss_pred             CeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH--HHHHHHHHhCeEEEecCCCCCH
Confidence            33444554444    4689999988777766554   7899999988887664432  357888999998888865 556


Q ss_pred             hHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCC
Q 017382          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (372)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~  315 (372)
                      +.+...          ++..++.+++.....+..+.+..            ..++.++.+++.....
T Consensus       109 ~~l~~~----------l~~~~~~~vi~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~  153 (541)
T d1lcia_         109 RELLNS----------MNISQPTVVFVSKKGLQKILNVQ------------KKLPIIQKIIIMDSKT  153 (541)
T ss_dssp             HHHHHH----------HHHHCCSEEEECGGGHHHHHHHH------------HHCTTCCEEEETTCSS
T ss_pred             HHHHHH----------HHhccceEEeeeccccccchhcc------------ccccccceeeeecCCc
Confidence            666555          66779999999988887776541            2456677777655443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=7.5  Score=28.55  Aligned_cols=57  Identities=11%  Similarity=-0.041  Sum_probs=40.0

Q ss_pred             ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382           63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST  122 (372)
Q Consensus        63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~  122 (372)
                      .++++||+|+|..-.+.--..+...+...|+.++.+..  +++. ...+++.+++.+|..
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~-~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEG-QKIVLQNGAHEVFNH   80 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred             hCCCCCCEEEEEeccccccccccccccccCcccccccc--cccc-cccccccCccccccc
Confidence            47999999999997665555555555777887766653  3444 456678899888854

>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase T
species: Thermus thermophilus [TaxId: 274]

Probab=81.28  E-value=2.1  Score=36.98  Aligned_cols=76  Identities=9%  Similarity=0.029  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCC--------
Q 017382           32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALS--------  101 (372)
Q Consensus        32 l~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~--------  101 (372)
                      |.++.+++|..|.+.+               +++++|+.|+|.++..  +-..++.-++.++|+.++.+...        
T Consensus         2 ~~~~L~k~A~llV~~~---------------l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~   66 (406)
T d2ayia1           2 FKRNLEKLAELAIRVG---------------LNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKR   66 (406)
T ss_dssp             CHHHHHHHHHHHHHTT---------------TCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHc---------------ccCCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeecChHHHHHH
Confidence            3567889999999875               4899999999998876  33344555678889977654321        


Q ss_pred             -----------CC---HHHHHHHHhhCCceEEEec
Q 017382          102 -----------YP---ESELLHVMHDSDISMVLST  122 (372)
Q Consensus       102 -----------~~---~~~l~~~l~~~~~~~vi~~  122 (372)
                                 .+   .+...+.++...+.+.|..
T Consensus        67 ~~~a~~e~l~~~p~~~~~~~~~~~~~~~a~i~I~~  101 (406)
T d2ayia1          67 LALAPEEGLDKAPAWLYEGMARAFREGAARLAVSG  101 (406)
T ss_dssp             HHHSCTTCTTCCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HhcCCHHHHhhcchhhHHHHHHHHHcCCcEEEeec
Confidence                       11   2334556677777777754

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=80.87  E-value=5.9  Score=34.91  Aligned_cols=102  Identities=14%  Similarity=-0.005  Sum_probs=73.3

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEc
Q 017382          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM  243 (372)
Q Consensus       167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~  243 (372)
                      ..||.+|++...+|.     .-.+|...+...+...+..+   +++++|++...++-+...-  ..+++++..|+..+..
T Consensus        23 ~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vpl   95 (534)
T d1v25a_          23 LFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL--EAYFAVPGMGAVLHTA   95 (534)
T ss_dssp             HSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEEC
T ss_pred             HcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHH--HHHHHHHHhCcEEEec
Confidence            356788877666542     23589999888777766544   7889999999988765543  3588899999998888


Q ss_pred             CC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382          244 PK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (372)
Q Consensus       244 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  285 (372)
                      +. ++.+.+-..          ++..++..++...........
T Consensus        96 ~~~~~~~~l~~~----------l~~~~~~~i~~~~~~~~~~~~  128 (534)
T d1v25a_          96 NPRLSPKEIAYI----------LNHAEDKVLLFDPNLLPLVEA  128 (534)
T ss_dssp             CTTSCHHHHHHH----------HHHHTCSEEEECGGGHHHHHH
T ss_pred             CCCCCHHHHHHH----------HHhhccccccccchhhhhHHH
Confidence            65 455665555          566788888877777666543

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=80.40  E-value=4.2  Score=37.32  Aligned_cols=95  Identities=15%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (372)
Q Consensus       168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  244 (372)
                      .+|.+|+|.... .+|.  .-.+|++.|...+..++..+   +++++|++...+|-+.-.-.  .+++++..|+..+..+
T Consensus        85 ~~d~~Ali~~~~-~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv--~~lA~~~~Gav~v~l~  159 (643)
T d1pg4a_          85 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAV--AMLACARIGAVHSVIF  159 (643)
T ss_dssp             HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHH--HHHHHHHHTCEEEECC
T ss_pred             CCCCEEEEEEec-CCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHH--HHHHHHHhCeEEEecC
Confidence            467888876533 2332  34689999887777766544   78999999999998766544  5788899998887775


Q ss_pred             -CCchhHHHHHHHhhCCCCCCCCCcceeEeecch
Q 017382          245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP  277 (372)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p  277 (372)
                       .+.++.+...          +++.++.+++..+
T Consensus       160 ~~~~~~~l~~~----------l~~~~~~~li~~~  183 (643)
T d1pg4a_         160 GGFSPEAVAGC----------IIDSSSRLVITAD  183 (643)
T ss_dssp             TTSCHHHHHHH----------HHHHTCSEEEEES
T ss_pred             CCCCHHHHHHH----------HHhcCCCEEEEcc
Confidence             4677777777          5556777666543