Citrus Sinensis ID: 017386

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
MADQENFVRVTRAAAKKRAASGSASEQPAKKKRVVLGELPTNTNVVVSVNPSLKAEPRKAKAKAKKALLTEKTKAKAKTKATEDADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDIKD
cccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHcHHHHHHHHHHccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccHHHHcccc
cccccccccccHHHHHHHHccccHHccccccccEEEEEccccccccccccccccccccccccccccccccHHcHHHcccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHEHccccHccHHccccccccccHHHHHHHcc
MADQENFVRVTRAAAKKRaasgsaseqpakkkrvvlgelptntnvvvsvnpslkaepRKAKAKAKKALLTEKTKAKAKtkatedadididarsddpqicgaYVTDIYQYLHsmevdpkrrplpdyVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASkyeeisppnvedfcyitdntytkdEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQedynasnlQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFitqpskhpwtaslqqysgykpseieGCVLILHDLylsrrggnLQAVREKYKqhkfkcvattpsspeipscyfedikd
madqenfvRVTRAaakkraasgsaseqpakkkrvvlgelptntnvvvsvnpslkaeprkakakakkalltektkakaktkatedadididarsddpqicGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYeeisppnveDFCYITDNTYTKDEVVKMEADILKslkfelgsptvKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQhkfkcvattpsspeipscyfedikd
MADQENFVRVTraaakkraasgsasEQPAKKKRVVLGElptntnvvvsvnpslKAEPRkakakakkalltektkakaktkatedadididarsddPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDIKD
************************************************************************************************QICGAYVTDIYQYLHSMEVDP***PLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVAT*****************
*************************************************************************************DIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDIK*
MADQENFVRVT*******************KKRVVLGELPTNTNVVVSVNPSL*******************************ADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDIKD
********************************RVVLGELP*****************************************TEDADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDIKD
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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADQENFVRVTRAAAKKRAASGSASEQPAKKKRVVLGELPTNTNVVVSVNPSLKAEPRKAKAKAKKALLTEKTKAKAKTKATEDADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDIKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query372 2.2.26 [Sep-21-2011]
Q3ECW2370 Cyclin-A3-4 OS=Arabidopsi yes no 0.975 0.981 0.628 1e-134
Q9FMH5355 Putative cyclin-A3-1 OS=A no no 0.943 0.988 0.629 1e-134
Q9C6A9372 Cyclin-A3-2 OS=Arabidopsi no no 0.991 0.991 0.619 1e-132
P25010341 G2/mitotic-specific cycli N/A no 0.916 1.0 0.581 1e-115
A0MEB5327 Cyclin-A3-3 OS=Arabidopsi no no 0.760 0.865 0.643 1e-107
Q75I54373 Cyclin-A3-1 OS=Oryza sati yes no 0.903 0.900 0.590 1e-102
Q2QN26385 Cyclin-A3-2 OS=Oryza sati no no 0.986 0.953 0.517 1e-102
Q7F830508 Cyclin-A1-1 OS=Oryza sati no no 0.798 0.584 0.554 2e-94
Q0DJR9356 Cyclin-A1-4 OS=Oryza sati no no 0.763 0.797 0.573 9e-94
Q0INT0491 Cyclin-A1-3 OS=Oryza sati no no 0.798 0.604 0.548 5e-93
>sp|Q3ECW2|CCA34_ARATH Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1 Back     alignment and function desciption
 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/371 (62%), Positives = 287/371 (77%), Gaps = 8/371 (2%)

Query: 1   MADQENFVRVTRAAAKKRAASGSASEQPAKKKRVVLGELPTNTNVVVSVNPSLKAEPRKA 60
           MA+ +N  R+TRAAAK++A+S +  E P  KKRVVLGELP  +NVV   N        + 
Sbjct: 1   MAENQNCARMTRAAAKRKASSMALDENPVSKKRVVLGELPNMSNVVAVPNQE------RE 54

Query: 61  KAKAKKALLTEKTKAKAKTKATEDADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRR 120
             KAK ++ T K + K K     +A + I++RS DPQ+C  + +DI  YL  ME  PK R
Sbjct: 55  TLKAKTSVNTSKRQMK-KALMIPEASVLIESRSVDPQMCEPFASDICAYLREMEGKPKHR 113

Query: 121 PLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKL 180
           PLPDY+EKVQ D++ +MR VLVDWLVEVAEEYKLVSDTLYLTISY+DRFLS+  +NRQKL
Sbjct: 114 PLPDYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKL 173

Query: 181 QLLGVSSMLIAS-KYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVK 239
           QL+GVS+MLIAS KYEEI PP VEDFCYITDNT+TK EVV MEADIL +L+FELGSPT+K
Sbjct: 174 QLVGVSAMLIASRKYEEIGPPKVEDFCYITDNTFTKQEVVSMEADILLALQFELGSPTIK 233

Query: 240 TFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQP 299
           TFLRRFTRVAQED+  S LQ+EFL  YL+ELS+LDY CVK+LPS ++AS +FLARFI +P
Sbjct: 234 TFLRRFTRVAQEDFKDSQLQIEFLCCYLSELSMLDYTCVKYLPSLLSASAVFLARFIIRP 293

Query: 300 SKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSS 359
            +HPW   L++Y+ YK ++++ CV I+HDLYLSRRG  L+AVR KYKQHK+KCVAT P S
Sbjct: 294 KQHPWNQMLEEYTKYKAADLQVCVGIIHDLYLSRRGNTLEAVRNKYKQHKYKCVATMPVS 353

Query: 360 PEIPSCYFEDI 370
           PE+P  +FEDI
Sbjct: 354 PELPLAFFEDI 364

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FMH5|CCA31_ARATH Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9C6A9|CCA32_ARATH Cyclin-A3-2 OS=Arabidopsis thaliana GN=CYCA3-2 PE=2 SV=1 Back     alignment and function description
>sp|P25010|CCNAL_DAUCA G2/mitotic-specific cyclin C13-1 (Fragment) OS=Daucus carota PE=2 SV=1 Back     alignment and function description
>sp|A0MEB5|CCA33_ARATH Cyclin-A3-3 OS=Arabidopsis thaliana GN=CYCA3-3 PE=2 SV=2 Back     alignment and function description
>sp|Q75I54|CCA31_ORYSJ Cyclin-A3-1 OS=Oryza sativa subsp. japonica GN=CYCA3-1 PE=3 SV=1 Back     alignment and function description
>sp|Q2QN26|CCA32_ORYSJ Cyclin-A3-2 OS=Oryza sativa subsp. japonica GN=CYCA3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q7F830|CCA11_ORYSJ Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DJR9|CCA14_ORYSJ Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYCA1-4 PE=2 SV=2 Back     alignment and function description
>sp|Q0INT0|CCA13_ORYSJ Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
388542153382 cyclin A, partial [Dimocarpus longan] 0.981 0.955 0.737 1e-155
224137698363 predicted protein [Populus trichocarpa] 0.967 0.991 0.705 1e-149
255538138373 cyclin A, putative [Ricinus communis] gi 0.973 0.970 0.707 1e-148
224063463360 predicted protein [Populus trichocarpa] 0.951 0.983 0.688 1e-147
359491997365 PREDICTED: putative cyclin-A3-1-like iso 0.973 0.991 0.696 1e-141
1064931384 cyclin A-like protein [Nicotiana tabacum 0.994 0.963 0.660 1e-139
2190259372 A-type cyclin [Catharanthus roseus] 0.994 0.994 0.655 1e-139
297795141359 CYCA3_1 [Arabidopsis lyrata subsp. lyrat 0.954 0.988 0.634 1e-135
15220147369 cyclin-A3-4 [Arabidopsis thaliana] gi|12 0.975 0.983 0.629 1e-134
297846918373 CYCA3_4 [Arabidopsis lyrata subsp. lyrat 0.981 0.978 0.634 1e-134
>gi|388542153|gb|AFK65510.1| cyclin A, partial [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/374 (73%), Positives = 314/374 (83%), Gaps = 9/374 (2%)

Query: 1   MADQENFVRVTRAAAKKRAASGSASEQPAKKKRVVLGELPTNTNVVVSVN--PSLKAEPR 58
           M DQEN  R+TRAA K+ A +  + EQP  +KRVVLGELPT +N +V +N  P       
Sbjct: 1   MVDQENCARLTRAAKKRAAFAVVSDEQPLTQKRVVLGELPTLSNAIVPLNRGPQKPRGKT 60

Query: 59  KAKAKAKKALLTEKTKAKAKTKATEDADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPK 118
           K K KAK+AL   K   K      ED  +D+D  SD+PQ+CGAY TDIY+YL  MEV+PK
Sbjct: 61  KPKRKAKRALEPPKVAKK------EDV-VDVDFTSDNPQMCGAYATDIYEYLRDMEVEPK 113

Query: 119 RRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQ 178
           RRPLPDY+EKVQKDVSANMRG+LVDWLVEV+EEYKL SDTLYLT+SYID FLSLNV+NRQ
Sbjct: 114 RRPLPDYIEKVQKDVSANMRGILVDWLVEVSEEYKLFSDTLYLTVSYIDGFLSLNVINRQ 173

Query: 179 KLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTV 238
           KLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTY K EVVKMEAD+LK+LKFE+G+PTV
Sbjct: 174 KLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYAKQEVVKMEADVLKALKFEMGNPTV 233

Query: 239 KTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQ 298
           KTFLRR +RVAQEDY AS+LQLEFLGYYLAELSLLDY+CVKFLPS VAASVI+L+RFIT+
Sbjct: 234 KTFLRRLSRVAQEDYKASSLQLEFLGYYLAELSLLDYSCVKFLPSLVAASVIYLSRFITR 293

Query: 299 PSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPS 358
           P  HPW ++LQQYSGYK S+I+ CVLI+HDLYLSRRGG LQAVREKYKQHKFKCVAT P+
Sbjct: 294 PKAHPWNSALQQYSGYKTSDIKECVLIIHDLYLSRRGGALQAVREKYKQHKFKCVATLPT 353

Query: 359 SPEIPSCYFEDIKD 372
           SPEIP  +FED+KD
Sbjct: 354 SPEIPVSHFEDVKD 367

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224137698|ref|XP_002327190.1| predicted protein [Populus trichocarpa] gi|222835505|gb|EEE73940.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255538138|ref|XP_002510134.1| cyclin A, putative [Ricinus communis] gi|223550835|gb|EEF52321.1| cyclin A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063463|ref|XP_002301157.1| predicted protein [Populus trichocarpa] gi|222842883|gb|EEE80430.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491997|ref|XP_002285074.2| PREDICTED: putative cyclin-A3-1-like isoform 1 [Vitis vinifera] gi|302142243|emb|CBI19446.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1064931|emb|CAA63541.1| cyclin A-like protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|2190259|dbj|BAA20410.1| A-type cyclin [Catharanthus roseus] Back     alignment and taxonomy information
>gi|297795141|ref|XP_002865455.1| CYCA3_1 [Arabidopsis lyrata subsp. lyrata] gi|297311290|gb|EFH41714.1| CYCA3_1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220147|ref|NP_175156.1| cyclin-A3-4 [Arabidopsis thaliana] gi|12325402|gb|AAG52644.1|AC079677_8 cyclin, putative; 23571-21736 [Arabidopsis thaliana] gi|21593219|gb|AAM65168.1| Cyclin, putative [Arabidopsis thaliana] gi|332194019|gb|AEE32140.1| cyclin-A3-4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846918|ref|XP_002891340.1| CYCA3_4 [Arabidopsis lyrata subsp. lyrata] gi|297337182|gb|EFH67599.1| CYCA3_4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
TAIR|locus:2167761355 CYCA3;1 "Cyclin A3;1" [Arabido 0.733 0.769 0.705 1e-109
TAIR|locus:2036756370 CYCA3;4 "CYCLIN A3;4" [Arabido 0.739 0.743 0.699 1e-109
TAIR|locus:2030648372 CYCA3;2 "cyclin-dependent prot 0.739 0.739 0.694 3.1e-108
TAIR|locus:2036761327 CYCA3;3 "Cyclin A3;3" [Arabido 0.739 0.840 0.632 3e-92
TAIR|locus:2205871460 CYCA1;1 "Cyclin A1;1" [Arabido 0.731 0.591 0.554 1.8e-78
TAIR|locus:2034250461 CYCA2;4 "Cyclin A2;4" [Arabido 0.723 0.583 0.533 1.5e-74
TAIR|locus:2196563450 CYCA2;3 "CYCLIN A2;3" [Arabido 0.723 0.597 0.529 3.6e-73
TAIR|locus:2148052436 CYC3B "mitotic-like cyclin 3B 0.723 0.616 0.520 1.2e-72
TAIR|locus:2031407442 CYCA1;2 "CYCLIN A1;2" [Arabido 0.725 0.610 0.488 4.3e-70
UNIPROTKB|P78396465 CCNA1 "Cyclin-A1" [Homo sapien 0.653 0.522 0.464 1.2e-51
TAIR|locus:2167761 CYCA3;1 "Cyclin A3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1049 (374.3 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
 Identities = 194/275 (70%), Positives = 236/275 (85%)

Query:    96 PQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLV 155
             PQ+CG YVT I++YL  +EV  K RPL DY+EK+QKDV++NMRGVLVDWLVEVAEEYKL+
Sbjct:    81 PQMCGPYVTSIFEYLRQLEV--KSRPLVDYIEKIQKDVTSNMRGVLVDWLVEVAEEYKLL 138

Query:   156 SDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTK 215
             SDTLYL +SYIDRFLSL  +N+Q+LQLLGV+SMLIASKYEEI+PPNV+DFCYITDNTYTK
Sbjct:   139 SDTLYLAVSYIDRFLSLKTVNKQRLQLLGVTSMLIASKYEEITPPNVDDFCYITDNTYTK 198

Query:   216 DEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY 275
              E+VKMEADIL +L+FELG+PT  TFLRRFTRVAQED+  S+LQ+EFL  YL+ELS+LDY
Sbjct:   199 QEIVKMEADILLALQFELGNPTSNTFLRRFTRVAQEDFEMSHLQMEFLCSYLSELSMLDY 258

Query:   276 ACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRG 335
               VKFLPS+VAAS +FLARFI +P +HPW   L++Y+ YK  +++ CV ++HDLYLSR+ 
Sbjct:   259 QSVKFLPSTVAASAVFLARFIIRPKQHPWNVMLEEYTRYKAGDLKECVAMIHDLYLSRKC 318

Query:   336 GNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDI 370
             G L+A+REKYKQHKFKCVAT P SPE+P   FED+
Sbjct:   319 GALEAIREKYKQHKFKCVATMPVSPELPLTVFEDV 353
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
TAIR|locus:2036756 CYCA3;4 "CYCLIN A3;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030648 CYCA3;2 "cyclin-dependent protein kinase 3;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036761 CYCA3;3 "Cyclin A3;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205871 CYCA1;1 "Cyclin A1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034250 CYCA2;4 "Cyclin A2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196563 CYCA2;3 "CYCLIN A2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148052 CYC3B "mitotic-like cyclin 3B from Arabidopsis" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031407 CYCA1;2 "CYCLIN A1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P78396 CCNA1 "Cyclin-A1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P51943CCNA2_MOUSENo assigned EC number0.3650.91930.8104yesno
Q75I54CCA31_ORYSJNo assigned EC number0.59010.90320.9008yesno
P25010CCNAL_DAUCANo assigned EC number0.58110.91661.0N/Ano
Q3ECW2CCA34_ARATHNo assigned EC number0.62800.97580.9810yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 2e-59
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 3e-46
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 2e-41
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-21
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-20
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 7e-15
cd0004388 cd00043, CYCLIN, Cyclin box fold 8e-14
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 0.001
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  187 bits (478), Expect = 2e-59
 Identities = 72/130 (55%), Positives = 100/130 (76%), Gaps = 3/130 (2%)

Query: 105 DIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTIS 164
           DIY YL  +E   + RP PDY+++ Q D++  MR +L+DWLVEV EE+KL+ +TLYL ++
Sbjct: 1   DIYAYLRELEE--EDRPPPDYLDQ-QPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVN 57

Query: 165 YIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEAD 224
           Y+DRFLS   + R KLQL+GV+ +LIA+KYEEI PP+VEDF YITDN YTK+E+++ME  
Sbjct: 58  YLDRFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELL 117

Query: 225 ILKSLKFELG 234
           IL +L ++L 
Sbjct: 118 ILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 372
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.9
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.84
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.84
KOG0835367 consensus Cyclin L [General function prediction on 99.81
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.77
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.71
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.52
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.46
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.46
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.32
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.74
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.73
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.66
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.56
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.44
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.8
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.25
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.36
KOG1674218 consensus Cyclin [General function prediction only 95.8
KOG1675343 consensus Predicted cyclin [General function predi 95.29
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.07
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 93.78
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 90.75
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 87.03
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 80.15
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-53  Score=410.19  Aligned_cols=357  Identities=46%  Similarity=0.750  Sum_probs=300.3

Q ss_pred             CCcccchhhhhhHHHhHHhhcCCC-CCCCccccccccCCCCCCCccccccCCCCCcccchhhhhhHHhhhHHHHhhhhhc
Q 017386            1 MADQENFVRVTRAAAKKRAASGSA-SEQPAKKKRVVLGELPTNTNVVVSVNPSLKAEPRKAKAKAKKALLTEKTKAKAKT   79 (372)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (372)
                      |..+.++.+.+++|.+++++.... ++.|...++++.|+++++++..... ....++..+.......-...+.... .-.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~-~~~   78 (359)
T KOG0654|consen    1 MEQKVAKPQNIFAADSKKANTSNVIDVEPIRQDYAVDGDLTALEELRSPP-KILSKQTNKSDLELLKLFSSEHKLS-LDE   78 (359)
T ss_pred             ChhhhhcccCCccCchhhhcccccccCCCccchhhhhchhhhhhhhhccc-cccchhhhhhhhcccccccccchhh-hcc
Confidence            445667788888888887775554 5666789999999999885433211 1111111111000000000000000 000


Q ss_pred             cCCC-CCCCCccCCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhH
Q 017386           80 KATE-DADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDT  158 (372)
Q Consensus        80 ~~~~-~~~~~~~~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~T  158 (372)
                      ..+. ..+.+++....||++|..|+.+|++|++..|... .+|.++|++.+|.++|+.||+++|||+++|++.+++..++
T Consensus        79 ~~~~~~~~~~~ds~~~dp~~c~~~~~~I~~~~r~~ei~~-~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~  157 (359)
T KOG0654|consen   79 ASAMDGFVMRIDSVGEDPQMCLKIAAKIYNTLRVSDIKS-ERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFET  157 (359)
T ss_pred             cccccccccchhhcccchHHHHHHHHHHhhcccccchhh-ccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhh
Confidence            0011 1124678899999999999999999999999653 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcch
Q 017386          159 LYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTV  238 (372)
Q Consensus       159 l~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp  238 (372)
                      ||+++++.|||++...+.++++|++|.+|++||+|+||+.+|.+++|+++++++|+..++..||..||+.|.|++..||.
T Consensus       158 l~ls~~~~drfl~~~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~  237 (359)
T KOG0654|consen  158 LYLSVNYRDRFLSYKEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTS  237 (359)
T ss_pred             eeecHHHHHHHhccCccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhh
Q 017386          239 KTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSE  318 (372)
Q Consensus       239 ~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~  318 (372)
                      ..|++.|+..++.    ...+++.++.||.|++++|+.|++|.||+||+||++||+.+++  .++|++.|+++|||+.+|
T Consensus       238 ~~~l~~~~~~~~~----~~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~--~~pW~~~L~~~T~y~~ed  311 (359)
T KOG0654|consen  238 KTFLRRFLRVAQT----PELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLD--FHPWNQTLEDYTGYKAED  311 (359)
T ss_pred             HHHHHHHHHhhcc----hhHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhcc--CCCCchhhHHhhcccHHH
Confidence            9999999888765    5667889999999999999999999999999999999999998  799999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHHhhCCCccCcccccCCCCCCChhhhcc
Q 017386          319 IEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFED  369 (372)
Q Consensus       319 l~~c~~~l~~l~~~~~~~~~~av~~KY~~~~~~~Va~~~~~~~~p~~~~~~  369 (372)
                      ++.|+..|+ ++++.++..+++|++||++++|++||.+++|  +|..||++
T Consensus       312 l~~~v~~L~-~~l~~~~~~l~air~ky~~~k~~~Va~~~~p--~p~~~~~~  359 (359)
T KOG0654|consen  312 LKPCVLDLH-LYLNASGTDLPAIREKYKQSKFKEVALLPVP--LPHTFVES  359 (359)
T ss_pred             HHHHHHHHh-cccCCCCCchHHHHHHhhhhhhhhhhccCCC--CcchhccC
Confidence            999999999 9999999999999999999999999999888  89998863

>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 7e-53
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 7e-53
1vin_A268 Bovine Cyclin A3 Length = 268 7e-53
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-53
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-53
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-53
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-52
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 6e-52
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 6e-52
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 7e-52
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 7e-52
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 7e-52
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 7e-52
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 7e-52
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 8e-52
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 8e-52
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 8e-52
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 9e-52
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 1e-51
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-51
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 1e-46
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 5e-46
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 4e-25
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-17
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-17
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 6e-17
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 9e-11
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 1e-10
1g3n_C257 Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Com 7e-08
2i53_A258 Crystal Structure Of Cyclin K Length = 258 1e-04
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure 
Iteration: 1

 Score =  204 bits (519), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
           Y  DI+ YL  MEV  K +P   Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8   YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
            ++YIDRFLS   + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
           E  +LK L F+L +PT+  FL ++    Q     +N ++E L  +L ELSL+D    +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
           LPS +AA+   LA +    +   W  SL Q +GY    ++ C+L LH  YL       Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
           +REKYK  K+  V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex Length = 257 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-127
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-123
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-121
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-116
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-113
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-111
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 1e-103
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 9e-97
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-23
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 1e-13
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-13
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2ivx_A257 Cyclin-T2; transcription regulation, cell division 3e-08
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 7e-08
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  364 bits (936), Expect = e-127
 Identities = 113/263 (42%), Positives = 163/263 (61%), Gaps = 10/263 (3%)

Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
           Y  DI+ YL  MEV  K +P   Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 6   YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62

Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
            ++YIDRFLS   + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 63  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122

Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
           E  +LK L F+L +PTV  FL ++    Q     +N ++E L  +L ELSL+D    +K+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 178

Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
           LPS +A +   LA +        W  SL + +GY    ++ C++ LH  YL       Q+
Sbjct: 179 LPSVIAGAAFHLALYTVT--GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 236

Query: 341 VREKYKQHKFKCVATTPSSPEIP 363
           +REKYK  K+  V+       + 
Sbjct: 237 IREKYKNSKYHGVSLLNPPETLN 259
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.94
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.88
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.68
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.19
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.45
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.43
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.33
2ivx_A257 Cyclin-T2; transcription regulation, cell division 90.48
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 89.25
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 89.14
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 88.12
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 85.52
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 84.51
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 82.19
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 80.36
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=4.2e-56  Score=419.14  Aligned_cols=257  Identities=43%  Similarity=0.715  Sum_probs=241.7

Q ss_pred             hhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccch
Q 017386           99 CGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQ  178 (372)
Q Consensus        99 ~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~  178 (372)
                      |.+|++|||.||+.+|  .+.+|.++|++. |++|++.||.+++|||++|+..|+++++|+++||+|+|||++..++.+.
T Consensus         3 ~~eY~~di~~~l~~~E--~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~   79 (260)
T 2cch_B            3 VPDYHEDIHTYLREME--VKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG   79 (260)
T ss_dssp             CCTTHHHHHHHHHHHH--HHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred             hHhHHHHHHHHHHHHH--hhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH
Confidence            6899999999999999  456788899986 9999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhH
Q 017386          179 KLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNL  258 (372)
Q Consensus       179 ~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~  258 (372)
                      ++||+|+||||||||+||..+|.+.+|+.++++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+.    .
T Consensus        80 ~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~----~  155 (260)
T 2cch_B           80 KLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN----C  155 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC----H
T ss_pred             HHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh----H
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765432    2


Q ss_pred             HHHHHHHHHHHHHhcchh-ccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhcCCCC
Q 017386          259 QLEFLGYYLAELSLLDYA-CVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGN  337 (372)
Q Consensus       259 ~~~~la~yl~elsl~d~~-~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~~~~  337 (372)
                      .+..+++|++++++.|+. |++|+||.||+|||++|+..++.  +.|...+..++||+++++.+|+..|.+++.+...+.
T Consensus       156 ~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~--~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~  233 (260)
T 2cch_B          156 KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG--QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHA  233 (260)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC--CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcc
Confidence            466799999999999999 99999999999999999999874  789999999999999999999999999998877778


Q ss_pred             hhHHHHhhCCCccCcccccCCCCCCCh
Q 017386          338 LQAVREKYKQHKFKCVATTPSSPEIPS  364 (372)
Q Consensus       338 ~~av~~KY~~~~~~~Va~~~~~~~~p~  364 (372)
                      +++|++||++++|++||.+|+|..+|.
T Consensus       234 ~~~i~~Ky~~~~~~~vs~~~~~~~~~~  260 (260)
T 2cch_B          234 QQSIREKYKNSKYHGVSLLNPPETLNL  260 (260)
T ss_dssp             CCHHHHHHTSGGGTTGGGSCCCSCCCC
T ss_pred             hHHHHHHHCcccccceeCCCCcccCCC
Confidence            899999999999999999999998873
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 372
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-49
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 6e-48
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-47
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-46
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 5e-44
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 2e-39
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 1e-28
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-25
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-22
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score =  160 bits (405), Expect = 3e-49
 Identities = 32/125 (25%), Positives = 69/125 (55%)

Query: 109 YLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168
            L+++++     P    + ++Q +V+ + R +L+ W+  + E ++L      L++S +DR
Sbjct: 2   VLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDR 61

Query: 169 FLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKS 228
           +L      ++ LQ +G + +LI SK   + P  V    Y++ + +T  E++  E DIL++
Sbjct: 62  YLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEA 121

Query: 229 LKFEL 233
           LK++ 
Sbjct: 122 LKWDT 126
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 100.0
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.9
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.79
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.76
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.36
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.08
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.8
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.62
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.57
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.55
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.42
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.35
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.61
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.46
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.13
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.05
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.93
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 84.42
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-35  Score=249.12  Aligned_cols=137  Identities=35%  Similarity=0.643  Sum_probs=129.5

Q ss_pred             CCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhcc-c
Q 017386           95 DPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSL-N  173 (372)
Q Consensus        95 d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~-~  173 (372)
                      +|+++..|++|||.+|+.+|  .++.+.++|+.+ |++++++||.++||||++++..++++.+|+|+||+|||||++. .
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E--~~~~~~~~~l~~-q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~   79 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKE--KTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE   79 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHT--TTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC
T ss_pred             CccccccCHHHHHHHHHHHH--HhhCCChHHHhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccc
Confidence            68889999999999999998  566777889875 8999999999999999999999999999999999999999985 4


Q ss_pred             cccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCccc
Q 017386          174 VLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELG  234 (372)
Q Consensus       174 ~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~  234 (372)
                      .++++++||+|+||||||+|+||..+|.+.++++++++.|+.++|.+||..||++|+|+|+
T Consensus        80 ~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          80 NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             cccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            6899999999999999999999999999999999999999999999999999999999985
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure