Citrus Sinensis ID: 017394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAAEASGSGCCNDEEEPQPKRFRQLE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccccccEEEEcccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHccccccccEEEEccccccccccccccccccEEEEEcccccccccccEEEEEEEEEEccccccccccccEEEEcccccccccEEEEEccccccccccEEEEEEEccccEEEEEEEEccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccccHcccccccEEEcccccccHccccHHHHcHHHHHHEEccccccccccHHHHHHHHccEEccccHHHHHccccccccccEEEcccccHHcccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHccccccccEEEEcccccccHHHccccccccEEEEEccccccccccEEEEEEEEEEEccccccccccccEEEEEccccccccEEEEcccccccccccEEEEEEEcccccEEEEEcccccEEEEEccEEEEEEEccccccccccccccccHHccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHHccccccHHcccccccccccccccHHHccc
Coil and Loop (DISEMBL)
mpwssdpvalSLSSSlsglcsltkldisycdlgegaipssigdlcsleelhlsgNNFVTLLASIYRLSSLRGIKLEECKMlqnlprlpariqgisldgcvslETLSDVLNlnehqipnihVHCVDCLKLAGNYDLALSLLKEYIknsecswrdfcivvpgseipewfeyqnnegssitistppktyknsklvgyaaccvfripkyslpypehdlcvwstdgygpygyrisfgkqfgQAVSDHLFLCyknredisevefssrsglelkrcglhpiyvhqgdkfnqtsdpvwnlnefghdclgstsftRSLNDDLdraeasgscrgddagsttsSERSFLKRSLEGYvgaaeasgsgccndeeepqpkrfrqle
Flexible Loop (DISEMBL)
MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEAsgscrgddagsttssersfLKRSLEGYVGAAeasgsgccndeeepqpkrfrqle
Low Complexity Region (SEG)
MPWssdpvalslssslsglcsltklDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAAEASGSGCCNDEEEPQPKRFRQLE
Disordered region (IsUnstruct)
***************LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTS********************************************************************
Disordered Region (DISOPRED)
*P*********LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQG*********************************************************************************************
Disordered Region (DISEMBL)
*************SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLD**********************FLKRSLEGYVGAAEASGSGCCNDEEEPQPKRFRQLE
Disordered Region (DISPRO)
*****DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRS****************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNREDISEVEFSSRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAAEASGSGCCNDEEEPQPKRFRQLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.513	0.166	0.290	4e-15
O82500	1095	Putative disease resistan	no	no	0.615	0.209	0.243	2e-05
Q7XA39	988	Putative disease resistan	N/A	no	0.225	0.085	0.359	0.0001

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 5/196 (2%)

Query: 6    DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIY 65
            D V         GL SL  L++SYC+L +G +P  IG L SL++L LS NNF  L +SI 
Sbjct: 819  DGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIA 878

Query: 66   RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVL----NLNEHQIPNIHV 121
            +L +L+ + L++C+ L  LP LP  +  + +D  ++L+ +  ++     L+  ++ + H 
Sbjct: 879  QLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHN 938

Query: 122  HCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITIST 181
              +  L     +    S+  +   +   S   F       +IP WF +Q  + SS++++ 
Sbjct: 939  DTMYNLFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWD-SSVSVNL 997

Query: 182  PPKTYKNSKLVGYAAC 197
            P   Y   K +G+A C
Sbjct: 998  PENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 106/267 (39%), Gaps = 38/267 (14%)

Query: 37   IPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISL 96
            +P  +  LC  E   L      T+   +  L  L+ I +  C  + +LP+LP  +  ++ 
Sbjct: 763  VPYVLEKLCLRENKELE-----TIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTA 817

Query: 97   DGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCI 156
              C SL+ L         +  +IH++ ++CLKL      A   +   +   + S+     
Sbjct: 818  VNCESLQILH-----GHFRNKSIHLNFINCLKLGQR---AQEKIHRSVYIHQSSY--IAD 867

Query: 157  VVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCV 216
            V+PG  +P +F Y++  GSSI I +       SK   +  C V    K    +   D+  
Sbjct: 868  VLPGEHVPAYFSYRST-GSSIMIHS--NKVDLSKFNRFKVCLVLGAGKR---FEGCDIKF 921

Query: 217  WSTDGYGPYGYRISFGKQFGQAVSDHLFLC--------------YKNREDISEVEFSSRS 262
            +      P  Y +          SDHL +C                +  +  EV F SR 
Sbjct: 922  YKQFFCKPREYYVPKHLDSPLLKSDHLCMCEFELMPPHPPTEWELLHPNEFLEVSFESRG 981

Query: 263  GL---ELKRCGLHPIYVHQGDKFNQTS 286
            GL   E+K CGL  +  H+  +F   S
Sbjct: 982  GLYKCEVKECGLQFLEPHETSEFRYLS 1008

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
           S L    SL  L++SY  L +  +PSSIGDL  L  L LS NNF +L   + +L +L+ +
Sbjct: 521 SLLKKFVSLRVLNLSYSKLEQ--LPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTL 578

Query: 74  KLEECKMLQNLPRLPAR---IQGISLDGC 99
            +  C  L  LP+  ++   ++ + +DGC
Sbjct: 579 DVHNCYSLNCLPKQTSKLSSLRHLVVDGC 607

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
399920226	2242	retrotransposon protein [Rosa rugosa]	0.747	0.123	0.355	1e-33
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.801	0.247	0.315	1e-32
399920215	1083	TIR-NBS-LRR [Rosa rugosa]	0.849	0.291	0.328	9e-32
332330342	1156	TIR-NBS-LRR resistance protein muRdr1D [	0.779	0.250	0.326	8e-31
332330339	1119	TIR-NBS-LRR resistance protein muRdr1A [	0.739	0.245	0.367	3e-30
224146780	540	predicted protein [Populus trichocarpa]	0.814	0.561	0.323	8e-30
255582274	943	leucine-rich repeat-containing protein,	0.887	0.349	0.293	4e-29
399920201	1115	TIR-NBS-LRR [Rosa rugosa]	0.709	0.236	0.372	7e-29
399920222	1134	TIR-NBS-LRR [Rosa rugosa]	0.747	0.245	0.347	8e-29
224108373	1279	tir-nbs-lrr resistance protein [Populus	0.655	0.190	0.354	2e-28

>gi|399920226|gb|AFP55573.1| retrotransposon protein [Rosa rugosa]

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 163/321 (50%), Gaps = 43/321 (13%)

Query: 1    MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL 60
             P  S    + + +SL    SLTKL+++ C+L EG IP+ IG L SLE L L GNNFV+L
Sbjct: 1928 FPRKSPHPLIPVLASLKHFSSLTKLNLNDCNLCEGEIPNDIGTLSSLEILKLRGNNFVSL 1987

Query: 61   LASIYRLSSLRGIKLEECKMLQNLPRLP-ARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
             ASI+ LS L  I +E CK LQ LP LP +R   ++ D C SL+   D  +L   ++   
Sbjct: 1988 PASIHLLSKLTQIDVENCKRLQQLPELPVSRSLWVTTDNCTSLQVFPDPPDLC--RLSAF 2045

Query: 120  HVHCVDCLKLAGNYDLA---LSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSS 176
             V CV+C  + GN D +    S+LK  ++ + CS+R +  +VPGSEIPEWF  Q + G  
Sbjct: 2046 WVSCVNCSSMVGNQDASYFLYSVLKRLLEETLCSFRYYLFLVPGSEIPEWFNNQ-SVGDR 2104

Query: 177  ITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDL---------CVWSTDGYGPYGY 227
            +T   P     NSK +G+A C +         +PE+ L         C W+   Y     
Sbjct: 2105 VTEKLPSDAC-NSKWIGFAVCALIVPQDNPSAFPENPLLDPDTCRIGCHWNNGFY----- 2158

Query: 228  RISFGKQF--GQAVSDHLFLC-----YKNREDISEVEF--------SSRSGLELKRCGLH 272
              S G++F   Q VSDHL+L      +   E   EV F         S   +++K+CG+ 
Sbjct: 2159 --SLGQKFRVRQFVSDHLWLFVLRSHFWKLEKRLEVNFVFEVTRAVGSNICIKVKKCGVP 2216

Query: 273  PIYVHQGD----KFNQTSDPV 289
             +Y H  +    K NQ+   +
Sbjct: 2217 ALYEHDKEELISKMNQSKSSI 2237

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 174/326 (53%), Gaps = 28/326 (8%)

Query: 23   TKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQ 82
            T+L +S C+LGEGA+P+ IG L SL +L+LS N FV+L  SI +LS L+ +++E+CKMLQ
Sbjct: 882  TRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLQFLRMEDCKMLQ 941

Query: 83   NLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGN---YDLALSL 139
            +LP LP+ ++   ++GC SLE +     L   Q+  +    ++C +L+ +    ++  +L
Sbjct: 942  SLPELPSNLEEFRVNGCTSLEKMQFSRKL--CQLNYLRYLFINCWRLSESDCWNNMFPTL 999

Query: 140  LKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCV 199
            L++  +        F +++PGSEIP WF +Q +EGSS+++ TPP +++N + +GYA C  
Sbjct: 1000 LRKCFQGPPNLIESFSVIIPGSEIPTWFSHQ-SEGSSVSVQTPPHSHENDEWLGYAVCA- 1057

Query: 200  FRIPKYSLPYPEHDLCVWST------DGYGPYGYRISFGKQFGQAVSDHLFLCY---KNR 250
                  SL YP+    V+ +      +G G     I    +  + +SDHL+  Y   + +
Sbjct: 1058 ------SLGYPDFPPNVFRSPMQCFFNGDGNESESIYVRLKPCEILSDHLWFLYFPSRFK 1111

Query: 251  EDISEVEFSSR---SGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHD-CLGST--S 304
                 V F      S  ++ +CG+  +Y    ++ N+ ++   N    G D C   +  +
Sbjct: 1112 RFDRHVRFRFEDNCSQTKVIKCGVRLVYQQDVEELNRMTNLYENSTFEGVDECFQESGGA 1171

Query: 305  FTRSLNDDLDRAEASGSCRGDDAGST 330
              + L    D  EASGS   D+   T
Sbjct: 1172 LVKRLGHTNDVGEASGSVSSDEQPPT 1197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920215|gb|AFP55562.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 177/375 (47%), Gaps = 59/375 (15%)

Query: 1    MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL 60
             P  S    + L +SL    SLT L ++ C+L EG +P+ IG L SLE L+L GNNF TL
Sbjct: 726  FPRKSPHPLIPLLASLKHFSSLTTLKLNDCNLCEGELPNDIGSLSSLEWLYLGGNNFSTL 785

Query: 61   LASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH 120
             ASI+ LS LR I +E CK LQ LP L A       D C SL+   D  +L      +  
Sbjct: 786  PASIHLLSKLRYINVENCKRLQQLPELSANDVLSRTDNCTSLQLFPDPPDLC-RITTSFW 844

Query: 121  VHCVDCLKLAGNYD---LALSLLKEYIKNSECSWRDFC---------------IVVPGSE 162
            ++CV+CL + GN D      S+LK +I+    +  D                 +V+PGSE
Sbjct: 845  LNCVNCLSMVGNQDASYFLYSVLKRWIEIQVLTRCDMTVHMQETHRRPLESLKVVIPGSE 904

Query: 163  IPEWFEYQNNEGSSITISTPP-KTYKNSKLVGYAACCVF-------RIPKYS-LPYPEHD 213
            IPEWF  Q + G  +T   P  + Y  SKL+G+A C +         +P+ S LP   H 
Sbjct: 905  IPEWFNNQ-SVGDRVTEKLPSDECY--SKLIGFAVCALIVPQDNPSAVPEESNLPDTCHI 961

Query: 214  LCVWSTDGYGPYGYRI-SFGKQFGQAVSDHLFLC-----YKNREDISEVEFS-------- 259
            + +W+      YG+ I S G    Q VSDHL+L      ++  E+  E EFS        
Sbjct: 962  VRLWNN-----YGFDIASVGIPVKQFVSDHLYLLVLLNPFRKPENCLEFEFSFEIRRAVG 1016

Query: 260  SRSGLELKRCGLHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEAS 319
            +  G+++K+CG+  +Y H  ++          +++       S S      D+   A  S
Sbjct: 1017 NNRGMKVKKCGVRALYEHDTEEL---------ISKMNQSKSSSISLYEEAMDEQKEAATS 1067

Query: 320  GSCRGDDAGSTTSSE 334
            GS   DD   + + E
Sbjct: 1068 GSGGSDDEYYSAAEE 1082

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332330342|gb|AEE43928.1| TIR-NBS-LRR resistance protein muRdr1D [Rosa multiflora]

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 170/355 (47%), Gaps = 65/355 (18%)

Query: 1    MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL 60
             P  S    + L +SL    SLT L+++ C+L EG IP+ IG L SLE L L GNNFV+L
Sbjct: 780  FPRKSPHPLVPLLASLKHFSSLTTLNLNDCNLCEGEIPNDIGSLSSLERLELRGNNFVSL 839

Query: 61   LASIYRLSSLRGIKLEECKMLQNLPRLP-ARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
              SI+ L  L+GI ++ CK LQ LP LP +R   +  D C SL+ L D  +L   ++   
Sbjct: 840  PVSIHLLFKLQGIDVQNCKRLQQLPDLPVSRSLQVKSDNCTSLQVLPDPPDLC--RLSYF 897

Query: 120  HVHCVDCLKLAGNYD---LALSLLKE--------------------------YIKNSECS 150
             ++CV+CL   GN D      S+LK                           +++ +  S
Sbjct: 898  SLNCVNCLSTVGNQDASYFLYSVLKRLLEVLSLSLSLSLSLSLSQWLCDMMVHMQETPRS 957

Query: 151  WRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKYSLPYP 210
            +R F  V+PGSEIPEWF+ Q + G S+T   P     N+K +G+A C +F         P
Sbjct: 958  FRRFRFVIPGSEIPEWFDNQ-SVGDSVTEKLPSGAC-NNKWIGFAVCALFVPQDNPSAVP 1015

Query: 211  E---------HDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLC-----YKNRE-DISE 255
            E            C W++DG    G+    G    Q VSDHLFL      ++N +   +E
Sbjct: 1016 EDPGLVPDTCEIWCRWNSDGISSGGH----GFPVKQFVSDHLFLLVFPSPFRNPDYTWNE 1071

Query: 256  VEF--------SSRSGLELKRCGLHPIYVHQGD----KFNQTSDPVWNLNEFGHD 298
            V+F         + + +++K+CG+  +Y H  +    K NQ+     +L E   D
Sbjct: 1072 VKFFFKVTRAVGNNTCIKVKKCGVRALYEHDTEELISKMNQSKGSSISLYEEAMD 1126

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332330339|gb|AEE43925.1| TIR-NBS-LRR resistance protein muRdr1A [Rosa multiflora]

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 152/302 (50%), Gaps = 27/302 (8%)

Query: 10   LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
            + L +SL  L  LT L ++ C+L EG IP+ IG L SLE+L L GNNFV+L ASI+ LS 
Sbjct: 787  IPLIASLKHLSFLTTLKLNDCNLCEGEIPNDIGSLSSLEKLELRGNNFVSLPASIHLLSK 846

Query: 70   LRGIKLEECKMLQNLPRLPARIQ-GISLDGCVSLETLSDVLNLNEH---QIP-NIHVHCV 124
            L  I +E CK LQ LP LPAR    ++ + C SL+   D     E      P N  +  V
Sbjct: 847  LYFINVENCKRLQQLPELPARQSLRVTTNNCTSLQVFPDPQVFPEPPNLSTPWNFSLISV 906

Query: 125  DCLKLAGNYD---LALSLLKEYIKN-SECSWRDFCIVVPGSEIPEWFEYQNNEGSSITIS 180
            +CL   GN D      S+LK +I+  +  S+  F  ++PGSEIP+WF  Q + G S+T  
Sbjct: 907  NCLSAVGNQDASYFIYSVLKRWIEQGNHRSFEFFKYIIPGSEIPDWFNNQ-SVGDSVTEK 965

Query: 181  TPPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVS 240
             P     NSK +G+A C +  +P  ++P      C W  + YG        G    Q VS
Sbjct: 966  LPSDEC-NSKWIGFAVCALI-VPPSAVPDEIKVFCSW--NAYGTGLIGTGTGSWLKQIVS 1021

Query: 241  DHLFLCY-------KNREDISEVEFSSRSG--LELKRCGLHPIYVHQGD----KFNQTSD 287
             HLFL         K  E+  EV+F  +      LK+CG   +Y H  +    K NQ+  
Sbjct: 1022 GHLFLAVLASPSRRKPPENCLEVKFVFKVDPCSHLKKCGARALYEHDMEELISKMNQSKS 1081

Query: 288  PV 289
             +
Sbjct: 1082 SI 1083

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146780|ref|XP_002336335.1| predicted protein [Populus trichocarpa] gi|222834747|gb|EEE73210.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 174/331 (52%), Gaps = 28/331 (8%)

Query: 23  TKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQ 82
           T+L +S C+LGEGA+P+ IG L SL +L+LS N FV+L  SI +LS L+ + +E+CKMLQ
Sbjct: 209 TRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLKFLYMEDCKMLQ 268

Query: 83  NLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGN---YDLALSL 139
           +LP+LP  ++ + ++GC SLE +    + N ++   +    ++C +L+ +    ++  +L
Sbjct: 269 SLPQLPPNLELLRVNGCTSLEKMQ--FSSNPYKFNCLSFCFINCWRLSESDCWNNMFHTL 326

Query: 140 LKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCV 199
           L++  +        F + +PGSEIP WF +Q +EGSS+++ TPP + +N + +GYA C  
Sbjct: 327 LRKCFQGPPNLIEVFSVFIPGSEIPTWFSHQ-SEGSSVSVQTPPHSLENDECLGYAVCAS 385

Query: 200 FRIPKYSLPYPEHDL--------CVWSTDGYG---PYGYR-ISFGKQFGQAVSDHL-FLC 246
                 +      D         C ++   YG    Y +R I    +     SDHL +L 
Sbjct: 386 LEYDGCASSELLTDYWVSGVPISCFFNGVNYGSVMSYFHRGIEMQWKRDNIPSDHLWYLF 445

Query: 247 YKNREDISEVEFS-----SRSGLELKRCGLHPIYVHQGDKFNQTSDPVWN-LNEFGHDCL 300
           + +R  I +   S      R  +++ +CG+ P+Y HQ D  N T + V     E G   +
Sbjct: 446 FPSRFKIFDRHVSLRFETYRPQIKVIKCGVRPVY-HQ-DVENSTFEGVDECFQESGGSTM 503

Query: 301 -GSTSFTRSLNDDLDRAEASGSCRGDDAGST 330
            G  +  + L    D  EASGS   D+   T
Sbjct: 504 RGGGALVKRLCYTNDVGEASGSVSSDEQPPT 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582274|ref|XP_002531928.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223528407|gb|EEF30442.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 186/381 (48%), Gaps = 51/381 (13%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
           S+   L SL  LD+  C+L E  IP+ +  L SL+E  LSGNNF++L AS+ RLS L  +
Sbjct: 592 SNAMDLYSLMVLDLGNCNLQEETIPTDLSCLSSLKEFCLSGNNFISLPASVCRLSKLEHL 651

Query: 74  KLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNY 133
            L+ C+ LQ++  +P+ ++ +S   C +LETL + L+L+  Q P  +    +C KL  N 
Sbjct: 652 YLDNCRNLQSMQAVPSSVKLLSAQACSALETLPETLDLSGLQSPRFNF--TNCFKLVENQ 709

Query: 134 ---DLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSK 190
              ++   +L+ Y++        F I++PGSEIP+W  +Q+    SI+I  PP  + +SK
Sbjct: 710 GCNNIGFMMLRNYLQGLSNPKPGFDIIIPGSEIPDWLSHQSLGDCSISIELPP-VWCDSK 768

Query: 191 LVGYAACCVFRIPKY-SLPYPEHDL-CVWSTDGYGPYGYRISFGKQFGQAV-SDHLFLCY 247
            +G+A C V+ I +  +L + + DL C     G+  + + + +     + V SD ++L +
Sbjct: 769 WMGFALCAVYVIYQEPALNFIDMDLTCFIKIKGH-TWCHELDYSFAEMELVGSDQVWLFF 827

Query: 248 KNREDI--------------SEVEFSSRS-GLELKRCGLHPIYVHQGDKFNQTSDPVWNL 292
            +R +               +EV F +   GL +K+ G+  +Y      FNQ  D +   
Sbjct: 828 LSRYEFLGIDCQGVAKTSSHAEVMFKAHGVGLYVKKFGVRLVYQQDVLVFNQKMDQI--- 884

Query: 293 NEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRS-LEGYVGAAEA 351
                 C          + D D +E  G               + +KRS +E +      
Sbjct: 885 ------CSSRNENLEVRHQDSDNSEVVG---------------ALVKRSCIENFSNDVSE 923

Query: 352 SGSGCCNDEEEPQPKRFRQLE 372
           S  G  N EEEP PKR ++++
Sbjct: 924 S-LGRSNFEEEPPPKRLKEID 943

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920201|gb|AFP55548.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 146/287 (50%), Gaps = 23/287 (8%)

Query: 12   LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
            L +SL    SLT L+++ C+L EG IP+ IG L SLE L L GNNFV+L ASI+ LS L+
Sbjct: 789  LLASLKHFSSLTTLNLNDCNLCEGEIPNDIGSLSSLESLELRGNNFVSLSASIHLLSKLK 848

Query: 72   GIKLEECKMLQNLPRLPAR-IQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130
             I +E C+ LQ LP LPA     +  D C SL+   D  +L   +I N   +CV+CL   
Sbjct: 849  HINVENCRRLQQLPELPASDYLRVVTDNCTSLQMFPDPQDLC--RIGNFEFNCVNCLSTV 906

Query: 131  GNYD---LALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYK 187
            GN D      S+LK  ++ +  S   F  V+PGSEIPEWF  Q + G S+T   P     
Sbjct: 907  GNQDASYFLYSVLKRLLEETHRSSEYFRFVIPGSEIPEWFNNQ-SVGDSVTEKLP----S 961

Query: 188  NSKLVGYAACCVFRIPKYSLPYPEHD--LCVWSTDGYGPYGYRISFGKQF--GQAVSDHL 243
            +   +G+A C +   P      PE     C W       +    S G  F   Q VSDHL
Sbjct: 962  DYMWIGFAVCALIVPPDNPSAVPEKISLRCRWPKGSPWTHSGVPSRGACFVVKQIVSDHL 1021

Query: 244  FLCYKNR-----EDI---SEVEFSSRSGLELKRCGLHPIYVHQGDKF 282
            FL    +     ED    ++ +FS  + +++K+CG    Y H  D+ 
Sbjct: 1022 FLLVLRKPENYLEDTCNEAKFDFSINNCIKVKKCGARAFYQHDMDEL 1068

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920222|gb|AFP55569.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 160/322 (49%), Gaps = 44/322 (13%)

Query: 12   LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
            L +SL    SLT+L ++ C+L EG IP+ IG L SLE L L GNNFV L ASI+ LS L+
Sbjct: 792  LLASLKHFSSLTQLKLNDCNLCEGEIPNDIGYLSSLELLQLRGNNFVNLPASIHLLSKLK 851

Query: 72   GIKLEECKMLQNLPRLPARIQ-GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130
             I +E CK LQ LP LPA  +  +  D C SL+   D  NL+  + P   +  ++C    
Sbjct: 852  RINVENCKRLQQLPELPATDELRVVTDNCTSLQVFPDPPNLS--RCPEFWLSGINCFSAV 909

Query: 131  GNYDLALSL---LKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYK 187
            GN      L   LK+ ++ +  S   F +V+PGSEIPEWF  Q + G S+ I   P    
Sbjct: 910  GNQGFRYFLYSRLKQLLEETPWSLYYFRLVIPGSEIPEWFNNQ-SVGDSV-IEKLPSYAC 967

Query: 188  NSKLVGYAACCVFRIPK---YSLPYPEH------DLCVWSTDGYGPYGYRISFGKQFGQA 238
            NSK +G A C +  +P+    ++P   H        C W+ +  G +G  ++  KQ    
Sbjct: 968  NSKWIGVALCFLI-VPQDNPSAVPEVRHLDPFTRVFCCWNKNCSG-HGRLVTTVKQI--- 1022

Query: 239  VSDHLFLCYKNR---------EDI-SEVEF--------SSRSGLELKRCGLHPIYVHQGD 280
            VSDHL      +         ED  +E++F         +  GL++K+CG   +Y H  +
Sbjct: 1023 VSDHLLFAVLPKFIWKPQNCLEDTCTEIKFVFVVDQTVGNSRGLQVKKCGARILYEHDTE 1082

Query: 281  ----KFNQTSDPVWNLNEFGHD 298
                K NQ+     +L E   D
Sbjct: 1083 ELISKMNQSKSSSISLYEEAMD 1104

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108373|ref|XP_002333401.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222836441|gb|EEE74848.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 148/274 (54%), Gaps = 30/274 (10%)

Query: 15   SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIK 74
            SLSGLCSL  L +  C+L EGA+P  IG L SL  L LS NNFV+L  SI RLS L  + 
Sbjct: 842  SLSGLCSLEVLGLRSCNLREGALPEDIGWLSSLRSLDLSQNNFVSLPKSINRLSELEMLV 901

Query: 75   LEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKL---AG 131
            LE+C ML++LP +P+++Q + L+GC+SL+T+ D + L+  +       C++C +L    G
Sbjct: 902  LEDCTMLESLPEVPSKVQTVYLNGCISLKTIPDPIKLSSSK--RSEFICLNCWELYNHNG 959

Query: 132  NYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKL 191
               + L +L+ Y++        F I VPG+EIP WF +Q ++GSSI +  P      S  
Sbjct: 960  QESMGLFMLERYLQGLSNPRTRFGIAVPGNEIPGWFNHQ-SKGSSIRVEVP------SWS 1012

Query: 192  VGYAACCVFRIPKYSLPYPEHDLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYKNRE 251
            +G+ AC  F     S        C +  +G   Y   +       Q +SDH++L Y + +
Sbjct: 1013 MGFVACVAFSSNGQSPSL----FCHFKANGRENYPSPMCISCNSIQVLSDHIWLFYLSFD 1068

Query: 252  DISEVE--------------FSSRSGLELKRCGL 271
             + E++               SSR+G+++K CG+
Sbjct: 1069 YLKELQEWQHGSFSNIELSFHSSRTGVKVKNCGV 1102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.456	0.148	0.299	9.6e-13
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.462	0.141	0.338	8.5e-12
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.653	0.187	0.305	2.6e-11
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.381	0.102	0.312	7.8e-10
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.451	0.138	0.331	9e-10
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.448	0.135	0.3	9.1e-10
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.381	0.091	0.312	1e-09
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.454	0.143	0.309	1.1e-09
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.481	0.150	0.299	4.1e-09
TAIR|locus:2156579	1190	AT5G48770 [Arabidopsis thalian	0.379	0.118	0.343	1.5e-08

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 200 (75.5 bits), Expect = 9.6e-13, P = 9.6e-13
 Identities = 53/177 (29%), Positives = 93/177 (52%)

Query:    26 DISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLP 85
             ++SYC+L +G +P  IG L SL++L LS NNF  L +SI +L +L+ + L++C+ L  LP
Sbjct:   839 NLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLP 898

Query:    86 RLPARIQGISLDGCVSLETLSDVLNLNE--HQIPNIHVHCVDCLKLAGNYDLA--LSLLK 141
              LP  +  + +D  ++L+ +  ++   +  H++     H      L   Y +   +S ++
Sbjct:   899 ELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHNDTMYNLFA-YTMFQNISSMR 957

Query:   142 EYIKNSECSWRDFCIVVPGSE-IPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAAC 197
               I  S+          P  E IP WF +Q  + SS++++ P   Y   K +G+A C
Sbjct:   958 HDISASDSLSLTVFTGQPYPEKIPSWFHHQGWD-SSVSVNLPENWYIPDKFLGFAVC 1013

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 66/195 (33%), Positives = 97/195 (49%)

Query:    27 ISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPR 86
             +S C L +  +P +IG L SL+ L LSGNN   L  S  +L++L+   L+ CKML++LP 
Sbjct:   862 LSRCSLYK--LPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPV 919

Query:    87 LPARIQGISLDGCVSLETLSDVLN-LNE-HQIPNIHVHCVDCLKLAGNYDLALSLL---- 140
             LP  +Q +    C SLETL++ L  L    +I ++ +   +C KL  N D   SL+    
Sbjct:   920 LPQNLQYLDAHECESLETLANPLTPLTVGERIHSMFIFS-NCYKL--NQDAQASLVGHAR 976

Query:   141 --KEYIKNSECS--WRDFC------IVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSK 190
                + + N+     +R F       I  P +EIP WF +Q   G S+ I  PP  + +  
Sbjct:   977 IKSQLMANASAKRYYRGFVPEPLVGICYPATEIPSWFCHQRL-GRSLEIPLPPH-WCDIN 1034

Query:   191 LVGYAACCVFRIPKY 205
              VG A   V     Y
Sbjct:  1035 FVGLALSVVVSFKDY 1049

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 90/295 (30%), Positives = 137/295 (46%)

Query:    27 ISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLP- 85
             +S  ++    IP+SIG+L +L EL LSGNNF  + ASI RL+ L  + L  C+ LQ LP 
Sbjct:   960 LSLSNMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALPD 1019

Query:    86 RLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIK 145
              LP  +  I +  C SL ++S   N  ++ +  +     +C KL    D A  +L     
Sbjct:  1020 ELPRGLLYIYIHSCTSLVSISGCFN--QYCLRKLVAS--NCYKL----DQAAQILIHRNL 1071

Query:   146 NSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRI--- 202
               E +  +     PGS+IP  F +Q   G S+ I  P ++  +S ++G++AC +  +   
Sbjct:  1072 KLESAKPEHSYF-PGSDIPTCFNHQVM-GPSLNIQLP-QSESSSDILGFSACIMIGVDGQ 1128

Query:   203 -PKYSLPY------PEHDLC-------VWSTDGYGPYGYRISFGKQFGQAVSDHLFLCYK 248
              P  +L         + D C       VW  D   P  +   +   FG   SDHL L  +
Sbjct:  1129 YPMNNLKIHCSCILKDADACELVVMDEVWYPD---PKAFTNMY---FG---SDHLLLFSR 1179

Query:   249 ---NREDISEV--EFS-------SRSGL-ELKRCGLHPIYVHQG-DKFNQTSDPV 289
                + E  SE   EFS       S S L E+K+C +H I +     +F+  SD +
Sbjct:  1180 TCTSMEAYSEALFEFSVENTEGDSFSPLGEVKKCAVHLISLKDMMQEFSNDSDKI 1234

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
 Identities = 51/163 (31%), Positives = 88/163 (53%)

Query:    35 GAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGI 94
             G IP  +  L  L +L+L  N F +L +S+ +LS+L+ + L +C+ L+ LP LP +++ +
Sbjct:  1076 GKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDCRELKRLPPLPCKLEQL 1135

Query:    95 SLDGCVSLETLSDV--------LNLNEH----QIPNI-HVHCVDCLKLAG-NYDLALSLL 140
             +L  C SLE++SD+        LNL        IP + H+  +  L + G N + +L++ 
Sbjct:  1136 NLANCFSLESVSDLSELTILTDLNLTNCAKVVDIPGLEHLTALKRLYMTGCNSNYSLAVK 1195

Query:   141 KEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPP 183
             K   K S    R+  +  PG+ +P+WF    ++G  +T S  P
Sbjct:  1196 KRLSKASLKMMRNLSL--PGNRVPDWF----SQGP-VTFSAQP 1231

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 62/187 (33%), Positives = 90/187 (48%)

Query:    27 ISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPR 86
             ++ C++ +  +P     L SL  L LS NN  TL  SI +L SL  + L+ C  L++LP 
Sbjct:   851 LTNCNIDK--LPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPL 908

Query:    87 LPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCV--DCLKL--AGNYDL-ALSLLK 141
             LP+ +Q +   GC SLE +S  L +       +H   +  DC KL  A   D+ A + LK
Sbjct:   909 LPSNLQYLDAHGCGSLENVSKPLTI-PLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLK 967

Query:   142 EYI-------KNSECSWRDFCIVV--PGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLV 192
               +        N +    D  + V  PG +IP WF +Q   GS I     P  + NSK +
Sbjct:   968 SQLLARTSRHHNHKGLLLDPLVAVCFPGHDIPSWFSHQKM-GSLIETDLLPH-WCNSKFI 1025

Query:   193 GYAACCV 199
             G + C V
Sbjct:  1026 GASLCVV 1032

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 54/180 (30%), Positives = 88/180 (48%)

Query:    37 IPSSIGDLCSLEELHLSGN-NFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGIS 95
             +P SI  L SL  L LS N N  TL   +  +  L+ ++L+ CK L +LP LP  +Q ++
Sbjct:   834 LPCSIFHLSSLRRLCLSRNDNIRTLRFDMGHMFHLKWLELKYCKNLTSLPILPPNLQCLN 893

Query:    96 LDGCVSLETLSD--VLNLNEHQIPN--IHVHCVDCLKLAGNYDLALSLLKEYIKNSECSW 151
               GC SL T++    L     QI +  I  +C +  +++ N  ++    K  + +++   
Sbjct:   894 AHGCTSLRTVASPQTLPTPTEQIHSTFIFTNCHELEQVSKNAIISYVQKKSKLMSADRYS 953

Query:   152 RDFCI------VVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFRIPKY 205
              DF          PG EIP WF +Q     S+ I   P+ + +S+++G A C V    +Y
Sbjct:   954 PDFVYKSLIGTCFPGCEIPAWFNHQAL--GSVLILELPQAWNSSRIIGIALCVVVSFKEY 1011

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 51/163 (31%), Positives = 88/163 (53%)

Query:    35 GAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGI 94
             G IP  +  L  L +L+L  N F +L +S+ +LS+L+ + L +C+ L+ LP LP +++ +
Sbjct:  1250 GKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDCRELKRLPPLPCKLEQL 1309

Query:    95 SLDGCVSLETLSDV--------LNLNEH----QIPNI-HVHCVDCLKLAG-NYDLALSLL 140
             +L  C SLE++SD+        LNL        IP + H+  +  L + G N + +L++ 
Sbjct:  1310 NLANCFSLESVSDLSELTILTDLNLTNCAKVVDIPGLEHLTALKRLYMTGCNSNYSLAVK 1369

Query:   141 KEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPP 183
             K   K S    R+  +  PG+ +P+WF    ++G  +T S  P
Sbjct:  1370 KRLSKASLKMMRNLSL--PGNRVPDWF----SQGP-VTFSAQP 1405

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 57/184 (30%), Positives = 86/184 (46%)

Query:    31 DLGEGAIPSSIGDLCSLEELHLSGNNFVT-LLASIYRLSSLRGIKLEECKMLQNLPRLPA 89
             DL E  +   I  L SL  L LS NN ++ L   I +L  L+ + L+ CK L ++P LP 
Sbjct:   841 DLPE--LRRGINGLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPP 898

Query:    90 RIQGISLDGCVSLETLSD---VLNLNEH-QIPNIHVHCVDCLKLAGNYDLALSLLKEYIK 145
              ++ +   GC  L+T++    +L L E  Q   I  +C +  ++A N   + +  K  + 
Sbjct:   899 NLEILDAHGCEKLKTVASPMALLKLMEQVQSKFIFTNCNNLEQVAKNSITSYAQRKSQLD 958

Query:   146 NSEC------SWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCV 199
                C      S   F    PGS++P WF YQ   GS++ +  PP    N +L   A C V
Sbjct:   959 ARRCYKEGGVSEALFIACFPGSDVPSWFNYQTF-GSALRLKLPPHWCDN-RLSTIALCAV 1016

Query:   200 FRIP 203
                P
Sbjct:  1017 VTFP 1020

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 61/204 (29%), Positives = 90/204 (44%)

Query:    27 ISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPR 86
             + YC+L +  IP  IG L  L +L L GN+F  L      L +L  + L +C  LQ++  
Sbjct:   790 LGYCNLSDELIPEDIGSLSFLRDLDLRGNSFCNLPTDFATLPNLGELLLSDCSKLQSILS 849

Query:    87 LPARIQGISLDGCVSLETLSDV--------LNLNE----HQIPNIHVH-CVDCLKLAGNY 133
             LP  +  + +  C+ L+   D+        L LN+     +IP IH H  +  + L G  
Sbjct:   850 LPRSLLFLDVGKCIMLKRTPDISKCSALFKLQLNDCISLFEIPGIHNHEYLSFIVLDG-- 907

Query:   134 DLALSLLKEYIKNSECSW--RDF-CIVVPGSE---IPEWFEYQNNEGSSITISTPPKTYK 187
                L+     I     +W  R+  CI +P      IP W  Y   E  S +I T P+T  
Sbjct:   908 -CKLASTDTTINTMLENWLKRNHECIYIPVDRPNVIPNWV-YFEEEKRSFSI-TVPETDN 964

Query:   188 NSKLVGYAACCVFRIPK-YSLPYP 210
             +  +VG+     F  P  YS  YP
Sbjct:   965 SDTVVGFTLWMNFVCPMGYSSIYP 988

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2156579 AT5G48770 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 54/157 (34%), Positives = 83/157 (52%)

Query:    46 SLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETL 105
             +L  L LSGN+ VT+  +I  L  L  + L +CK L+++ +LP  +  +   GC SLE +
Sbjct:   923 NLTYLDLSGNDMVTMPVTIRFLRLLNTLCLNDCKKLKSMVQLPPNLTSLYARGCTSLEII 982

Query:   106 SDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIK---NSECSWRDFCIVVPGSE 162
                L L +H I   HV    C KL  N ++A +L+  +++     E   R  C+   GS 
Sbjct:   983 H--LPL-DHSIK--HVDLSYCPKL--N-EVA-NLMDRFLRCGRKEEVPQRFACL--SGSR 1031

Query:   163 IPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCV 199
             +P +F+YQ  E S   IS PP  +  S+ VG+ AC +
Sbjct:  1032 VPIYFDYQAREYSR-EISIPP-IWHASEFVGFDACII 1066

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
           SL S L  L +L  LD+S+ DL +  +P  + +L +L  L LSGN    L   I  LS+L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 16  LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIK 74
           + GL SL  LD+ Y +L  G IPSS+G+L +L+ L L  N     +  SI+ L  L  + 
Sbjct: 232 IGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 75  LEECKMLQNLPRLPARIQGISL 96
           L +  +   +P L  ++Q + +
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEI 312

Length = 968

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 16  LSGLCSLTKLDISYC-DLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIK 74
           LS   +L  L +S C  L E  +PSSI  L  LE+L +S    + +L +   L SL  + 
Sbjct: 653 LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710

Query: 75  LEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNL 111
           L  C  L++ P +   I  + LD   ++E     L L
Sbjct: 711 LSGCSRLKSFPDISTNISWLDLDE-TAIEEFPSNLRL 746

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.36
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.16
PLN03150	623	hypothetical protein; Provisional	99.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.7
PLN03150	623	hypothetical protein; Provisional	98.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.6
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.48
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.94
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.64
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.57
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.45
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.16
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.87
PRK15386	426	type III secretion protein GogB; Provisional	96.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.58
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.98
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.77
smart00370	26	LRR Leucine-rich repeats, outliers.	92.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.34
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	81.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.12

>PLN03210 Resistant to P

Probab=99.92  E-value=1.3e-23  Score=234.89  Aligned_cols=190  Identities=21%  Similarity=0.353  Sum_probs=145.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCC---------------------CCCCEEeccCCCCcc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDL---------------------CSLEELHLSGNNFVT   59 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L---------------------~~L~~L~Ls~N~l~~   59 (372)
                      |+|++|...+.+|.++++|++|+.|+|++|... +.+|..+ ++                     ++|+.|+|++|.++.
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~  860 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINL-ETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE  860 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCc-CeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCcc
Confidence            567888888889999999999999999998654 5677643 22                     356677777778888


Q ss_pred             cchhhhcCCCCcEEEccccccccCCCCCCc---ccccccccCCcccccccCcCccCCC---------CC-Cccccccccc
Q 017394           60 LLASIYRLSSLRGIKLEECKMLQNLPRLPA---RIQGISLDGCVSLETLSDVLNLNEH---------QI-PNIHVHCVDC  126 (372)
Q Consensus        60 lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~---~l~~L~~~~c~sL~~l~~~~n~l~~---------~~-~~l~~~~~nc  126 (372)
                      +|.++..+++|+.|+|++|+.+..+|..+.   .|+.|++.+|.+|+.+++..+....         .. ......|.||
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC  940 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC  940 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence            999999999999999999998888887554   4556799999999987764422110         11 1123478999


Q ss_pred             ccccccchHHHHHHHHHhhcCCCCCCCceeecCCCCCCcccccccCCCCeEE-EecCCCCccCCCceeeeEEEEEecCCC
Q 017394          127 LKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLVGYAACCVFRIPKY  205 (372)
Q Consensus       127 ~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~~~~~g~slt-~~Lp~~~~~~~~~~gfa~C~v~~~~~~  205 (372)
                      .+|.+  .+.       ++..   .....+++||.++|+||.|++. |++++ +.+|+.|. ..++.||++|+|+++...
T Consensus       941 ~~L~~--~a~-------l~~~---~~~~~~~l~g~evp~~f~hr~~-g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210        941 FNLDQ--EAL-------LQQQ---SIFKQLILSGEEVPSYFTHRTT-GASLTNIPLLHISP-CQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred             cCCCc--hhh-------hccc---ccceEEECCCccCchhccCCcc-cceeeeeccCCccc-CCCccceEEEEEEecCcc
Confidence            99873  221       2211   1234578999999999999999 99998 99999998 788999999999998764


Q ss_pred             C
Q 017394          206 S  206 (372)
Q Consensus       206 ~  206 (372)
                      .
T Consensus      1007 ~ 1007 (1153)
T PLN03210       1007 F 1007 (1153)
T ss_pred             c
Confidence            3

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.36  E-value=1e-12  Score=145.07  Aligned_cols=83  Identities=28%  Similarity=0.374  Sum_probs=48.6

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      +|++|.+.+.+|..++++++|+.|+|++|.+. +.+|..++++++|++|+|++|++. .+|..++.+++|+.|+|++|.+
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            45555555555555666666666666666555 555655666666666666666555 5555566666666666666655


Q ss_pred             ccCCC
Q 017394           81 LQNLP   85 (372)
Q Consensus        81 l~~lP   85 (372)
                      .+.+|
T Consensus       225 ~~~~p  229 (968)
T PLN00113        225 SGEIP  229 (968)
T ss_pred             CCcCC
Confidence            54444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.32  E-value=2e-12  Score=142.77  Aligned_cols=85  Identities=26%  Similarity=0.335  Sum_probs=65.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+.+|..++++++|++|+|++|++. +.+|..++.+++|+.|+|++|++. .+|..|+.+++|++|+|++|.
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            567788887788888888888888888888876 677777788888888888888777 777777777778888887777


Q ss_pred             cccCCCC
Q 017394           80 MLQNLPR   86 (372)
Q Consensus        80 ~l~~lP~   86 (372)
                      +.+.+|.
T Consensus       248 l~~~~p~  254 (968)
T PLN00113        248 LTGPIPS  254 (968)
T ss_pred             eccccCh
Confidence            6665553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.16  E-value=7.6e-12  Score=109.41  Aligned_cols=144  Identities=17%  Similarity=0.185  Sum_probs=93.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |-||+|.++ .+|+.|..|.+|+.|++++|++  ..+|..|..|++|+.|+++-|++..+|..|+.++.|+.|||.+|++
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence            457888884 4566789999999999999999  4599999999999999999999999999999999999999988875


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCCCCCccccccccccccc------ccchHHHHHHHHHhhcCCCCCCCc
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA------GNYDLALSLLKEYIKNSECSWRDF  154 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~------~~~~~~l~~l~~~l~~~~~~~~~~  154 (372)
                      ...  .+|.+..     .++.|+.|.++.|-+....+.+ ..+.+..-|.      -.+|..+..|.+ +.+++..+|++
T Consensus       115 ~e~--~lpgnff-----~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lpkeig~lt~-lrelhiqgnrl  185 (264)
T KOG0617|consen  115 NEN--SLPGNFF-----YMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLPKEIGDLTR-LRELHIQGNRL  185 (264)
T ss_pred             ccc--cCCcchh-----HHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCcHHHHHHHH-HHHHhccccee
Confidence            432  3444433     2333333333333222111100 0011100000      025666666665 66777777777


Q ss_pred             ee
Q 017394          155 CI  156 (372)
Q Consensus       155 ~~  156 (372)
                      ++
T Consensus       186 ~v  187 (264)
T KOG0617|consen  186 TV  187 (264)
T ss_pred             ee
Confidence            75

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=2.8e-10  Score=120.34  Aligned_cols=85  Identities=28%  Similarity=0.408  Sum_probs=79.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.|.+|+.+..|++|+.|+|++|++. |.+|..++.+++|+.|+|++|+|. .+|..++.|++|+.|+|++|+
T Consensus       423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             EECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            578999999999999999999999999999998 899999999999999999999999 899999999999999999999


Q ss_pred             cccCCCC
Q 017394           80 MLQNLPR   86 (372)
Q Consensus        80 ~l~~lP~   86 (372)
                      +.+.+|.
T Consensus       502 l~g~iP~  508 (623)
T PLN03150        502 LSGRVPA  508 (623)
T ss_pred             ccccCCh
Confidence            9887775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.84  E-value=1.7e-10  Score=101.08  Aligned_cols=105  Identities=27%  Similarity=0.360  Sum_probs=62.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-------------------------C
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-------------------------N   55 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-------------------------N   55 (372)
                      |+|++|+| ..+|.+++.|++|+.|+++.|.+.  .+|..||.++.|+.|||++                         |
T Consensus        61 ln~~nnqi-e~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn  137 (264)
T KOG0617|consen   61 LNLSNNQI-EELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN  137 (264)
T ss_pred             hhcccchh-hhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence            35566665 444555555555555555555552  2455555555555555554                         4


Q ss_pred             CCcccchhhhcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           56 NFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        56 ~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      .|..+|..+++|++|+.|.+..|.++    .+|..++     .++.|+.|+...|++....|
T Consensus       138 dfe~lp~dvg~lt~lqil~lrdndll----~lpkeig-----~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  138 DFEILPPDVGKLTNLQILSLRDNDLL----SLPKEIG-----DLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             CcccCChhhhhhcceeEEeeccCchh----hCcHHHH-----HHHHHHHHhcccceeeecCh
Confidence            55566666677777777777777644    3444454     66778888888887765333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.83  E-value=5.9e-10  Score=113.55  Aligned_cols=142  Identities=21%  Similarity=0.244  Sum_probs=103.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      +|||.|++ ..+|..+.++++|+.|+||+|.|++  +-..++.+.+|+.|+||.|.++.+|+.+.+|++|+.|.+.+|++
T Consensus       227 vDlS~N~L-p~vPecly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  227 VDLSENNL-PIVPECLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             ccccccCC-CcchHHHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence            57888987 6778899999999999999999954  77778888899999999999999999999999999999999985


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCCCCCccc------ccccccccccccchHHHHHHHHHhhcCCCCCCCc
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH------VHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDF  154 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~------~~~~nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~  154 (372)
                      .  +..+|+.+.     .+..|+.++..+|.+....-.++      -.-.+|+.|. .+|..|-.|.. |..+++..|.=
T Consensus       304 ~--FeGiPSGIG-----KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~-l~vLDlreNpn  374 (1255)
T KOG0444|consen  304 T--FEGIPSGIG-----KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD-LKVLDLRENPN  374 (1255)
T ss_pred             c--ccCCccchh-----hhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCC-cceeeccCCcC
Confidence            3  456777777     66778888888887754221110      0112333333 35666544433 55666665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.81  E-value=1.2e-09  Score=111.27  Aligned_cols=66  Identities=27%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394           12 LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus        12 lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      +|+.|..|..|+.||||.|++.  +.|..+..-+++-.|+||+|++.+||.. +.+|.-|-+|+|++|+
T Consensus        95 iP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             CCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            4444555555555555555553  2555555445555555555555555432 3344444444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.70  E-value=2.9e-08  Score=106.44  Aligned_cols=102  Identities=24%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|+.|++. .+|+.+.  ++|+.|+|++|+|.  .+|..   +++|++|+|++|+|+.+|..   .++|+.|+|++|. 
T Consensus       206 LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-  273 (788)
T PRK15387        206 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-  273 (788)
T ss_pred             EEcCCCCCC-cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence            578899886 6888775  47999999999995  48863   57899999999999998853   4578888888887 


Q ss_pred             ccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~  114 (372)
                      +..+|.+|..|+.|++.++         ++|+.|+++.|.+..
T Consensus       274 L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        274 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS  316 (788)
T ss_pred             hhhhhhchhhcCEEECcCCccccccccccccceeECCCCcccc
Confidence            4567777777777766554         467777777776655

>PLN03150 hypothetical protein; Provisional

Probab=98.66  E-value=3.3e-08  Score=104.64  Aligned_cols=85  Identities=28%  Similarity=0.443  Sum_probs=77.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcC-CCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRL-SSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L-~~L~~L~L~~n   78 (372)
                      |+|++|.+.|.+|+.++.|++|+.|+|++|+++ |.+|..+++|++|+.|+|++|+|+ .+|..++.+ .++..+++.+|
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            689999999999999999999999999999998 999999999999999999999999 999988764 46788999999


Q ss_pred             ccccCCCC
Q 017394           79 KMLQNLPR   86 (372)
Q Consensus        79 ~~l~~lP~   86 (372)
                      ..+...|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            87665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.63  E-value=3.5e-08  Score=105.91  Aligned_cols=89  Identities=24%  Similarity=0.349  Sum_probs=64.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+. .+|..+.  ++|+.|+|++|+|.  .+|..+.  .+|+.|+|++|++..+|..+.  ++|+.|+|++|++
T Consensus       204 L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt--sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L  274 (754)
T PRK15370        204 LILDNNELK-SLPENLQ--GNIKTLYANSNQLT--SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI  274 (754)
T ss_pred             EEecCCCCC-cCChhhc--cCCCEEECCCCccc--cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence            578888887 5666554  58899999999885  4787553  468888888888888887664  4788888888774


Q ss_pred             ccCCCC-CCcccccccccCC
Q 017394           81 LQNLPR-LPARIQGISLDGC   99 (372)
Q Consensus        81 l~~lP~-lp~~l~~L~~~~c   99 (372)
                      . .+|. +|.+|+.|+++++
T Consensus       275 ~-~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        275 S-CLPENLPEELRYLSVYDN  293 (754)
T ss_pred             C-ccccccCCCCcEEECCCC
Confidence            4 4664 5556666666554

>PLN03210 Resistant to P

Probab=98.62  E-value=1.3e-07  Score=106.71  Aligned_cols=97  Identities=25%  Similarity=0.390  Sum_probs=55.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-CcccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+. .+|..+..+++|+.|+|++|+.. +.+|. ++.+++|+.|+|++|. +..+|.+|..+++|+.|++++|.
T Consensus       616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EECcCcccc-ccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            345555543 45555666666666666665433 44553 5566666666666653 34666666666666666666666


Q ss_pred             cccCCCCC--CcccccccccCCc
Q 017394           80 MLQNLPRL--PARIQGISLDGCV  100 (372)
Q Consensus        80 ~l~~lP~l--p~~l~~L~~~~c~  100 (372)
                      .++.+|..  ..+|+.|++++|.
T Consensus       693 ~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        693 NLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CcCccCCcCCCCCCCEEeCCCCC
Confidence            55555542  2345555555554

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.60  E-value=3.1e-09  Score=107.43  Aligned_cols=178  Identities=21%  Similarity=0.286  Sum_probs=122.7

Q ss_pred             ccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccccc
Q 017394            3 WSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQ   82 (372)
Q Consensus         3 Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~   82 (372)
                      |.+|.+ -.+|..+.+|..|++|||+.|+++.  +|..++.|+ |+.|-+++|+++.+|..|+.+..|..|+.+.|.+ +
T Consensus       105 Ly~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~  179 (722)
T KOG0532|consen  105 LYHNCI-RTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-Q  179 (722)
T ss_pred             HHhccc-eecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh-h
Confidence            445554 4567778888888899998888854  888888776 8888888899998998888888888888888873 2


Q ss_pred             CCCCCCcccccccccCCcccccccCcCccCCC------CCCcccccccccccccccchHHHHHHHHHhhcCCCCCCCc--
Q 017394           83 NLPRLPARIQGISLDGCVSLETLSDVLNLNEH------QIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDF--  154 (372)
Q Consensus        83 ~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~------~~~~l~~~~~nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~--  154 (372)
                         .+|+.+.     ++++|+.+....|++.-      .+|.+.++|+ |+|+. .+|..|..|+. ||.+.+.+|.+  
T Consensus       180 ---slpsql~-----~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS-cNkis-~iPv~fr~m~~-Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  180 ---SLPSQLG-----YLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS-CNKIS-YLPVDFRKMRH-LQVLQLENNPLQS  248 (722)
T ss_pred             ---hchHHhh-----hHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc-cCcee-ecchhhhhhhh-heeeeeccCCCCC
Confidence               4555666     67778888777776543      1233334555 56654 58999988887 77777777766  


Q ss_pred             ---eeecCCC-CCCcccccccCCCCeEEEecCCCCccCCCceeeeEEEEEe
Q 017394          155 ---CIVVPGS-EIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFR  201 (372)
Q Consensus       155 ---~~~lPg~-~IP~wf~~~~~~g~slt~~Lp~~~~~~~~~~gfa~C~v~~  201 (372)
                         ++|+-|. .|-.|++-|+. ..-..-.++.    ...-.+|.-|-|-.
T Consensus       249 PPAqIC~kGkVHIFKyL~~qA~-q~~~a~~~~t----~~RP~~~~~c~~ed  294 (722)
T KOG0532|consen  249 PPAQICEKGKVHIFKYLSTQAC-QSGGALDLYT----TLRPRHFSSCHVED  294 (722)
T ss_pred             ChHHHHhccceeeeeeecchhc-cccCCccccc----ccCCcccCCcchhh
Confidence               4677774 78889888776 2111111211    12345666666644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.60  E-value=3.5e-08  Score=87.82  Aligned_cols=102  Identities=22%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             CcccCCCCCCcCCcccc-CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhh-hcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i-~~L~~L~~L~L~~n   78 (372)
                      |+|++|.|...  +.++ .+.+|+.|+|++|.+.  .++ .+..++.|+.|++++|.++.++..+ ..+++|+.|+|++|
T Consensus        24 L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   24 LNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             --------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred             ccccccccccc--cchhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence            67888888654  4566 5789999999999995  365 4788999999999999999997666 46899999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++. .+.+    +.  .+..|++|+.|++..|.+..
T Consensus        99 ~I~-~l~~----l~--~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   99 KIS-DLNE----LE--PLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             ----SCCC----CG--GGGG-TT--EEE-TT-GGGG
T ss_pred             cCC-ChHH----hH--HHHcCCCcceeeccCCcccc
Confidence            842 2222    22  23478999999998887653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.54  E-value=3e-08  Score=96.86  Aligned_cols=98  Identities=28%  Similarity=0.316  Sum_probs=73.2

Q ss_pred             CCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhh--------------------
Q 017394            5 SDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI--------------------   64 (372)
Q Consensus         5 ~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i--------------------   64 (372)
                      +|++.+-+|..++.+++|..|+|++|-+.  .+|.+++.+..|+.||++.|.|..+|.++                    
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd  497 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD  497 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence            34445667788899999999999999885  49999999999999999999988888764                    


Q ss_pred             ----hcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394           65 ----YRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        65 ----~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                          .++.+|..|||.+|.+ +   .+|+.++     +|++|++|.+.+|.++
T Consensus       498 ~~~l~nm~nL~tLDL~nNdl-q---~IPp~Lg-----nmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  498 PSGLKNMRNLTTLDLQNNDL-Q---QIPPILG-----NMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHhhhhhhcceeccCCCch-h---hCChhhc-----cccceeEEEecCCccC
Confidence                4555666677766652 2   3444555     7777777777776665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=6.4e-08  Score=70.71  Aligned_cols=59  Identities=34%  Similarity=0.490  Sum_probs=51.4

Q ss_pred             CCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccccc
Q 017394           20 CSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        20 ~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~   80 (372)
                      ++|+.|+|++|++.  .+| ..+..+++|++|++++|+++.+|. .|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999995  466 468899999999999999998884 789999999999999873

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.53  E-value=1.4e-08  Score=103.02  Aligned_cols=166  Identities=23%  Similarity=0.201  Sum_probs=90.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+||+|.|...-++++....+|++|+|++|++. ..-+..+..|+.|+.|+|+.|.+..|-. .|..+++|+.|||++|.
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            466666666666666666666667777766665 3333446666666666666666665553 45666777777777776


Q ss_pred             cccCCCCCC------cccccc-------------cccCCcccccccCcCccCCCCCCccccccccccccccc-----chH
Q 017394           80 MLQNLPRLP------ARIQGI-------------SLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGN-----YDL  135 (372)
Q Consensus        80 ~l~~lP~lp------~~l~~L-------------~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~~~-----~~~  135 (372)
                      +...|..-.      ++|+.|             .++++.+|++|++..|.+....+..+..+ +..+|.=+     -+.
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence            554443211      122222             33566777777777776544322211111 22222200     123


Q ss_pred             HHHHHHHHhhcCCCCCCCceeecCCCCCCcccccccC
Q 017394          136 ALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNN  172 (372)
Q Consensus       136 ~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~~~~  172 (372)
                      .++|+.+||....+.    +.++--...|+|+..|+.
T Consensus       456 ql~Wl~qWl~~~~lq----~sv~a~CayPe~Lad~~i  488 (873)
T KOG4194|consen  456 QLKWLAQWLYRRKLQ----SSVIAKCAYPEPLADQSI  488 (873)
T ss_pred             cHHHHHHHHHhcccc----cceeeeccCCccccccee
Confidence            456676666544332    233344477899887765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.49  E-value=4.4e-09  Score=102.54  Aligned_cols=96  Identities=29%  Similarity=0.374  Sum_probs=55.8

Q ss_pred             cCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccC
Q 017394            4 SSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQN   83 (372)
Q Consensus         4 s~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~   83 (372)
                      .+|++ ..+|+.+.++.+|..|++.+|++.  .+|++...|+.|+.||...|-++.+|..++.+.+|..|+|..|+ +..
T Consensus       145 ~~N~i-~slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~  220 (565)
T KOG0472|consen  145 TNNQI-SSLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRF  220 (565)
T ss_pred             ccccc-ccCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-ccc
Confidence            33443 334445555566666666666653  35555555666666666666666777777777777777777776 344


Q ss_pred             CCCCCcccccccccCCcccccccCcCccC
Q 017394           84 LPRLPARIQGISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        84 lP~lp~~l~~L~~~~c~sL~~l~~~~n~l  112 (372)
                      +|++|         +|..|..++...|.+
T Consensus       221 lPef~---------gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  221 LPEFP---------GCSLLKELHVGENQI  240 (565)
T ss_pred             CCCCC---------ccHHHHHHHhcccHH
Confidence            66555         444455555444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.48  E-value=7.6e-08  Score=103.35  Aligned_cols=88  Identities=19%  Similarity=0.372  Sum_probs=63.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+. .+|..+.  .+|+.|+|++|++.  .+|..+.  ++|+.|+|++|+++.+|..+.  .+|+.|+|++|++
T Consensus       225 L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        225 LYANSNQLT-SIPATLP--DTIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             EECCCCccc-cCChhhh--ccccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc
Confidence            578888876 5666553  47889999999885  4887764  578899999999888887664  4788999988875


Q ss_pred             ccCCCC-CCcccccccccC
Q 017394           81 LQNLPR-LPARIQGISLDG   98 (372)
Q Consensus        81 l~~lP~-lp~~l~~L~~~~   98 (372)
                      . .+|. +|.++..|++++
T Consensus       296 t-~LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        296 R-TLPAHLPSGITHLNVQS  313 (754)
T ss_pred             c-cCcccchhhHHHHHhcC
Confidence            4 4553 444555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.48  E-value=1.8e-07  Score=100.40  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=46.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCC-----------------CCCCCEEeccCCCCcccchh
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-----------------LCSLEELHLSGNNFVTLLAS   63 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~-----------------L~~L~~L~Ls~N~l~~lP~~   63 (372)
                      |+|++|.+.. +|.   .+++|+.|+|++|++.  .+|.....                 ..+|+.|+|++|+|+.+|..
T Consensus       287 L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~--~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l  360 (788)
T PRK15387        287 LWIFGNQLTS-LPV---LPPGLQELSVSDNQLA--SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL  360 (788)
T ss_pred             EECcCCcccc-ccc---cccccceeECCCCccc--cCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC
Confidence            3566676653 443   2467788888888775  25442111                 12466666666666666642


Q ss_pred             hhcCCCCcEEEccccccccCCCCCCccccccccc
Q 017394           64 IYRLSSLRGIKLEECKMLQNLPRLPARIQGISLD   97 (372)
Q Consensus        64 i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~   97 (372)
                         ..+|+.|++++|++. .+|.+|.+|+.|+++
T Consensus       361 ---p~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs  390 (788)
T PRK15387        361 ---PSELYKLWAYNNRLT-SLPALPSGLKELIVS  390 (788)
T ss_pred             ---Ccccceehhhccccc-cCcccccccceEEec
Confidence               234555555555532 355555444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.41  E-value=1.9e-07  Score=94.99  Aligned_cols=79  Identities=23%  Similarity=0.290  Sum_probs=61.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      ||||.|.|+...-+++..=.+++.|+|++|.+++ .=-..|..|.+|..|.|+.|.++.||. .|++|++|+.|+|..|.
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            5788888877766777777788888888888852 223457788888889999999998884 66779999999998887


Q ss_pred             c
Q 017394           80 M   80 (372)
Q Consensus        80 ~   80 (372)
                      +
T Consensus       233 i  233 (873)
T KOG4194|consen  233 I  233 (873)
T ss_pred             e
Confidence            3

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.36  E-value=5.1e-08  Score=103.43  Aligned_cols=84  Identities=29%  Similarity=0.435  Sum_probs=69.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|.+|.+....-+-+.++++|+.|+|++|.|  +.+|.. +.+|..|+.|+||||+++.||.++..+..|++|...+|.
T Consensus       364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             HHHhcCcccccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc
Confidence            57889999888777899999999999999999  558875 788999999999999999999988877777777777666


Q ss_pred             cccCCCCC
Q 017394           80 MLQNLPRL   87 (372)
Q Consensus        80 ~l~~lP~l   87 (372)
                      + ..+|++
T Consensus       442 l-~~fPe~  448 (1081)
T KOG0618|consen  442 L-LSFPEL  448 (1081)
T ss_pred             e-eechhh
Confidence            3 345543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.26  E-value=4.2e-07  Score=66.33  Aligned_cols=56  Identities=30%  Similarity=0.386  Sum_probs=49.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCC
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF   57 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l   57 (372)
                      |+|++|++....+..|.++++|+.|+|++|++. ..-|..|..+++|++|++++|+|
T Consensus         6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             EEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             EECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999998887789999999999999999996 44455799999999999999975

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=5.3e-07  Score=80.30  Aligned_cols=98  Identities=26%  Similarity=0.327  Sum_probs=47.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCccc-CCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~   77 (372)
                      |+||+|.|...  +.+..|+.|+.|+|++|.++  .++..+ ..+++|+.|+|++|++..+-  ..+..+++|+.|+|.+
T Consensus        47 L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   47 LDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             EE-TTS--S----TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             EECCCCCCccc--cCccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence            68999999765  35888999999999999996  376555 46899999999999998554  3678899999999999


Q ss_pred             cccccCCCCCCcccccccccCCcccccccC
Q 017394           78 CKMLQNLPRLPARIQGISLDGCVSLETLSD  107 (372)
Q Consensus        78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~  107 (372)
                      |+.... +    .-+..-+..+++|+.|+.
T Consensus       123 NPv~~~-~----~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  123 NPVCEK-K----NYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -GGGGS-T----THHHHHHHH-TT-SEETT
T ss_pred             Ccccch-h----hHHHHHHHHcChhheeCC
Confidence            986532 2    222234446777777764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.09  E-value=4.1e-07  Score=96.72  Aligned_cols=98  Identities=22%  Similarity=0.374  Sum_probs=82.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+||+|.+....-..+.+|..|+.|+||+|.|.  .||..+..++.|++|...+|.+..+| .+..++.|+.+||+.|.+
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence            689999985444456788999999999999995  59999999999999999999999999 899999999999999985


Q ss_pred             cc-CCCC-CC-cccccccccCCcc
Q 017394           81 LQ-NLPR-LP-ARIQGISLDGCVS  101 (372)
Q Consensus        81 l~-~lP~-lp-~~l~~L~~~~c~s  101 (372)
                      .. .+|. +| +.|++|++++.+.
T Consensus       465 ~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  465 SEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhhhhCCCcccceeeccCCcc
Confidence            33 3443 56 7888888877653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=3.5e-06  Score=57.65  Aligned_cols=39  Identities=31%  Similarity=0.513  Sum_probs=18.7

Q ss_pred             CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc
Q 017394           21 SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL   61 (372)
Q Consensus        21 ~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP   61 (372)
                      +|++|+|++|++.  .+|+.+++|++|+.|++++|+|+.+|
T Consensus         2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4555555555553  25544555555555555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=6e-06  Score=56.48  Aligned_cols=37  Identities=30%  Similarity=0.402  Sum_probs=32.5

Q ss_pred             CCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394           45 CSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus        45 ~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      ++|++|+|++|+|+.+|..|.+|++|+.|++++|++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            5799999999999999998999999999999999843

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.94  E-value=2.6e-06  Score=80.82  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=26.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL   61 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP   61 (372)
                      ||||+|.| ..+-.+..-++.++.|++|.|.+..  + .++..|++|+.|||++|.++++-
T Consensus       289 lDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls~~~  345 (490)
T KOG1259|consen  289 LDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLAECV  345 (490)
T ss_pred             ccccccch-hhhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhHhhh
Confidence            34555554 2233334444555555555555531  2 22445555555555555444333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.94  E-value=2.8e-06  Score=92.85  Aligned_cols=88  Identities=28%  Similarity=0.275  Sum_probs=71.5

Q ss_pred             ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccc
Q 017394           14 SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQG   93 (372)
Q Consensus        14 ~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~   93 (372)
                      ..|..|+.|++|||++|.-. +.+|..|+.|-+|++|+|+++.+..+|.++++|.+|.+|++..+..+..+|....    
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~----  639 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL----  639 (889)
T ss_pred             HHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhh----
Confidence            34778999999999998655 7899999999999999999999999999999999999999999887765543221    


Q ss_pred             ccccCCcccccccCcCc
Q 017394           94 ISLDGCVSLETLSDVLN  110 (372)
Q Consensus        94 L~~~~c~sL~~l~~~~n  110 (372)
                          .+.+|++|.+...
T Consensus       640 ----~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  640 ----ELQSLRVLRLPRS  652 (889)
T ss_pred             ----hcccccEEEeecc
Confidence                3455555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.91  E-value=1.3e-06  Score=88.82  Aligned_cols=110  Identities=24%  Similarity=0.259  Sum_probs=68.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |||+.|+++ .+|..+..|+ |+.|-+++|++  +.+|..|+.+..|..||.+.|++.++|+.++.|.+|+.|++..|.+
T Consensus       126 l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl--~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  126 LDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL--TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL  201 (722)
T ss_pred             hhhccchhh-cCChhhhcCc-ceeEEEecCcc--ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh
Confidence            467777763 4455566655 67777777777  4577777777777777777777777777777777777777766664


Q ss_pred             ccCCCCCC-ccccccc------------ccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLP-ARIQGIS------------LDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp-~~l~~L~------------~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.-.+++- ..|..||            +.+++.|++|-+..|.++.
T Consensus       202 ~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  202 EDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            33111111 0122222            2356677777777776655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.87  E-value=7.1e-07  Score=87.22  Aligned_cols=111  Identities=24%  Similarity=0.278  Sum_probs=84.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-CCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-NNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|..|+|....|..|+.+++|+.|||+.|+|+ ..-|..|.+|++|..|-+-+ |+|+.||. .|++|..|+.|.+.-|
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence            578899999999999999999999999999997 56688899999988887766 99999995 6889999998888877


Q ss_pred             cccc-------CCCCC-----Cc----ccccccccCCcccccccCcCccC
Q 017394           79 KMLQ-------NLPRL-----PA----RIQGISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        79 ~~l~-------~lP~l-----p~----~l~~L~~~~c~sL~~l~~~~n~l  112 (372)
                      ++.-       .+|.+     +.    .+..-.+.++.+++++++..|.+
T Consensus       151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            6321       12211     11    11112445677888888877763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.72  E-value=5.4e-06  Score=79.46  Aligned_cols=69  Identities=28%  Similarity=0.350  Sum_probs=43.7

Q ss_pred             CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCC---CCEEeccCCCCc-----ccchhhhcC-CCCcEEEccccccc
Q 017394           12 LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCS---LEELHLSGNNFV-----TLLASIYRL-SSLRGIKLEECKML   81 (372)
Q Consensus        12 lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~---L~~L~Ls~N~l~-----~lP~~i~~L-~~L~~L~L~~n~~l   81 (372)
                      ++..+..+++|+.|+|++|.+. +..+..+..+.+   |+.|++++|++.     .+...+..+ ++|+.|++++|.+.
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALG-PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCC-hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            3345566777777777777775 344544544444   777777777766     233455566 67777777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.66  E-value=1.8e-05  Score=78.78  Aligned_cols=82  Identities=26%  Similarity=0.408  Sum_probs=68.0

Q ss_pred             CcccCCCCCCcCCccccCCC-CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |++.+|.+ ..+|+....+. +|+.|++++|.+.  .+|..++.+++|+.|+++.|++..+|...+.++.|+.|++++|+
T Consensus       121 L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         121 LDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             EecCCccc-ccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence            45667776 45566677774 9999999999995  48888999999999999999999999888899999999999998


Q ss_pred             cccCCCC
Q 017394           80 MLQNLPR   86 (372)
Q Consensus        80 ~l~~lP~   86 (372)
                      + ..+|.
T Consensus       198 i-~~l~~  203 (394)
T COG4886         198 I-SDLPP  203 (394)
T ss_pred             c-ccCch
Confidence            3 34444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.64  E-value=9.8e-06  Score=77.69  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=60.6

Q ss_pred             CcccCCCCCCcCCccccCCCC---CCEEeecCCCCCCC---CCCcccCCC-CCCCEEeccCCCCc-----ccchhhhcCC
Q 017394            1 MPWSSDPVALSLSSSLSGLCS---LTKLDISYCDLGEG---AIPSSIGDL-CSLEELHLSGNNFV-----TLLASIYRLS   68 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~---L~~L~Ls~n~l~~~---~lP~~i~~L-~~L~~L~Ls~N~l~-----~lP~~i~~L~   68 (372)
                      |+|++|.+.+..+..+..+..   |+.|++++|++.+.   .+...+..+ ++|+.|+|++|+++     .++..+..+.
T Consensus        86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  165 (319)
T cd00116          86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR  165 (319)
T ss_pred             EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence            578888887777776666665   99999999988621   123345666 88999999999888     4555677788


Q ss_pred             CCcEEEccccccc
Q 017394           69 SLRGIKLEECKML   81 (372)
Q Consensus        69 ~L~~L~L~~n~~l   81 (372)
                      +|+.|++++|.+.
T Consensus       166 ~L~~L~l~~n~l~  178 (319)
T cd00116         166 DLKELNLANNGIG  178 (319)
T ss_pred             CcCEEECcCCCCc
Confidence            8999999988765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.57  E-value=3.4e-05  Score=76.90  Aligned_cols=81  Identities=30%  Similarity=0.458  Sum_probs=63.7

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCC-CCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLC-SLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~-~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      +++.|.+...+ ..+..++.++.|++.+|.+.+  ||..+..++ +|+.|++++|++..+|..+..+++|+.|++++|++
T Consensus        99 ~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          99 DLNLNRLRSNI-SELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eccccccccCc-hhhhcccceeEEecCCccccc--CccccccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            34444543333 335667889999999999964  999888885 99999999999999998999999999999999984


Q ss_pred             ccCCCC
Q 017394           81 LQNLPR   86 (372)
Q Consensus        81 l~~lP~   86 (372)
                      . .+|.
T Consensus       176 ~-~l~~  180 (394)
T COG4886         176 S-DLPK  180 (394)
T ss_pred             h-hhhh
Confidence            4 3444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00017  Score=72.27  Aligned_cols=54  Identities=26%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             CcccCCCCCCcCCccccCC-CCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCcccch
Q 017394            1 MPWSSDPVALSLSSSLSGL-CSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFVTLLA   62 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L-~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~~lP~   62 (372)
                      |+++++.+ ..+|    .+ .+|+.|.+++|.-. ..+|..+  .++|+.|++++| ++..+|.
T Consensus        57 L~Is~c~L-~sLP----~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         57 LYIKDCDI-ESLP----VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             EEeCCCCC-cccC----CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccccc
Confidence            46676654 3334    23 25777777776443 4466544  246666777666 4445554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.45  E-value=4.2e-05  Score=83.84  Aligned_cols=77  Identities=27%  Similarity=0.377  Sum_probs=68.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      ||||+|.-.+.+|.+|+.|-+|++|+|++..+.  .+|..+++|+.|.+||+..+... .+|..+..|++|++|.+..-.
T Consensus       576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             EECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            689999999999999999999999999999996  59999999999999999988755 666666679999999986543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.43  E-value=3.2e-05  Score=73.60  Aligned_cols=68  Identities=26%  Similarity=0.174  Sum_probs=58.8

Q ss_pred             CcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394           10 LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        10 ~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |.+-.++..+..|++||||+|.++.  +-.+..-++.++.|+++.|.+..+-. +..|++|+.|||++|.+
T Consensus       274 G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  274 GSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL  341 (490)
T ss_pred             CceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh
Confidence            4444556678899999999999964  88888889999999999999998874 89999999999999974

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.32  E-value=2e-05  Score=67.07  Aligned_cols=77  Identities=19%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             cccCCCCCCcCCcc---ccCCCCCCEEeecCCCCCCCCCCcccCCC-CCCCEEeccCCCCcccchhhhcCCCCcEEEccc
Q 017394            2 PWSSDPVALSLSSS---LSGLCSLTKLDISYCDLGEGAIPSSIGDL-CSLEELHLSGNNFVTLLASIYRLSSLRGIKLEE   77 (372)
Q Consensus         2 ~Ls~N~i~~~lP~s---i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L-~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~   77 (372)
                      +|++..+ +.+++.   +.....|+..+|++|.+  ..+|..+... +.++.|+|+.|.++.+|..+..++.|+.|+++.
T Consensus        33 dLssc~l-m~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   33 DLSSCQL-MYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             ccccchh-hHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence            4555554 223333   23344555667777777  3466665443 466777777777777777777777777777777


Q ss_pred             cccc
Q 017394           78 CKML   81 (372)
Q Consensus        78 n~~l   81 (372)
                      |++.
T Consensus       110 N~l~  113 (177)
T KOG4579|consen  110 NPLN  113 (177)
T ss_pred             Cccc
Confidence            7643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.16  E-value=3.9e-05  Score=80.29  Aligned_cols=74  Identities=30%  Similarity=0.364  Sum_probs=43.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |||++|++...  ..+..|++|+.|||++|.|.  .+|.- .... .|+.|+|++|-+++|- .|.+|.+|+.|||+.|-
T Consensus       192 LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  192 LNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             hccchhhhhhh--HHHHhcccccccccccchhc--cccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhccchhHhh
Confidence            46666666554  24566666666666666663  25432 1122 2666666666666554 56666666666666665


Q ss_pred             c
Q 017394           80 M   80 (372)
Q Consensus        80 ~   80 (372)
                      +
T Consensus       266 l  266 (1096)
T KOG1859|consen  266 L  266 (1096)
T ss_pred             h
Confidence            3

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.07  E-value=0.00021  Score=70.23  Aligned_cols=89  Identities=22%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCccccc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQG   93 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~   93 (372)
                      .|..|++|+.|+|++|+++ +.-+..|..+.+|+.|.|.+|++..+- ..|.+++.|+.|+|.+|++...-|.   ..  
T Consensus       269 cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~---aF--  342 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG---AF--  342 (498)
T ss_pred             HHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc---cc--
Confidence            5889999999999999997 566778999999999999999999776 4688999999999999997653332   22  


Q ss_pred             ccccCCcccccccCcCccC
Q 017394           94 ISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        94 L~~~~c~sL~~l~~~~n~l  112 (372)
                         ....+|.+|.+-.|.+
T Consensus       343 ---~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  343 ---QTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ---cccceeeeeehccCcc
Confidence               2556677776655543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0005  Score=68.41  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC--cccCCCCCCCEEeccCCCCc--ccchh-----hhcCCCCc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP--SSIGDLCSLEELHLSGNNFV--TLLAS-----IYRLSSLR   71 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~~L~~L~Ls~N~l~--~lP~~-----i~~L~~L~   71 (372)
                      |+|++|+..+..-.+...+..|+.|||++|++.+  .+  ..++.|+.|..|+++.+.+.  .+|+.     ...+++|+
T Consensus       227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  227 LYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             hhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            5678886444444455667889999999998864  44  56888999999999999888  55654     46778999


Q ss_pred             EEEcccccc
Q 017394           72 GIKLEECKM   80 (372)
Q Consensus        72 ~L~L~~n~~   80 (372)
                      +|++..|+.
T Consensus       305 ~L~i~~N~I  313 (505)
T KOG3207|consen  305 YLNISENNI  313 (505)
T ss_pred             eeecccCcc
Confidence            999999984

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.87  E-value=0.00052  Score=69.24  Aligned_cols=74  Identities=27%  Similarity=0.306  Sum_probs=53.9

Q ss_pred             ccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            3 WSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         3 Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |..|.+.... ..+..+++|+.|++.+|++.  .+...+..+++|++|+|++|.|+.+. .+..++.|+.|++.+|.+
T Consensus        79 l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen   79 LRQNLIAKIL-NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI  152 (414)
T ss_pred             cchhhhhhhh-cccccccceeeeeccccchh--hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence            4445554311 33667888888888888884  35555778888888888888888776 567777788888888874

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.79  E-value=0.002  Score=64.66  Aligned_cols=72  Identities=24%  Similarity=0.432  Sum_probs=54.2

Q ss_pred             ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-CCCcccchhhhcCCCCcEEEccccccccCCCCCCcccccc
Q 017394           16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-NNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGI   94 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L   94 (372)
                      +..+.+++.|++++|.|.  .+|.   -..+|+.|++++ ++++.+|..+.  ++|++|++++|..+.   .+|.+|+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~---sLP~sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS---GLPESVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc---ccccccceE
Confidence            445788999999999885  4882   234699999987 57778887653  589999999996444   566677776


Q ss_pred             ccc
Q 017394           95 SLD   97 (372)
Q Consensus        95 ~~~   97 (372)
                      ++.
T Consensus       118 ~L~  120 (426)
T PRK15386        118 EIK  120 (426)
T ss_pred             EeC
Confidence            654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.59  E-value=0.00014  Score=76.21  Aligned_cols=87  Identities=24%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394           14 SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARIQ   92 (372)
Q Consensus        14 ~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~   92 (372)
                      .++.-++.|+.|||+.|++..  .- .+..++.|+.|||++|.++.+|. +...+ +|+.|.+++|.+.. +       .
T Consensus       181 ~SLqll~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-L-------~  248 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-L-------R  248 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh-h-------h
Confidence            344445666666666666642  22 56666666666666666666663 22222 36666666665221 1       1


Q ss_pred             cccccCCcccccccCcCccCCC
Q 017394           93 GISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        93 ~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                        .+.++.+|+.|+++.|.+..
T Consensus       249 --gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  249 --GIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             --hHHhhhhhhccchhHhhhhc
Confidence              33366777888888776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.58  E-value=0.00069  Score=68.35  Aligned_cols=101  Identities=25%  Similarity=0.298  Sum_probs=75.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|..|.|..... .+..+++|+.|+|++|.|..  +. .+..++.|+.|++++|.+..++ .+..+..|+.+++++|.+
T Consensus       100 l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~--i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i  174 (414)
T KOG0531|consen  100 LDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK--LE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRI  174 (414)
T ss_pred             eeccccchhhccc-chhhhhcchheecccccccc--cc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchh
Confidence            5678888866542 26789999999999999963  43 3677888999999999999887 566689999999999985


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .. +...      . +..+.+|+.+.+..|....
T Consensus       175 ~~-ie~~------~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  175 VD-IEND------E-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hh-hhhh------h-hhhccchHHHhccCCchhc
Confidence            43 1110      1 2367777777777776543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.54  E-value=0.0003  Score=60.06  Aligned_cols=56  Identities=23%  Similarity=0.315  Sum_probs=25.2

Q ss_pred             CCEEeecCCCCCCCCCCcc---cCCCCCCCEEeccCCCCcccchhhhcC-CCCcEEEccccc
Q 017394           22 LTKLDISYCDLGEGAIPSS---IGDLCSLEELHLSGNNFVTLLASIYRL-SSLRGIKLEECK   79 (372)
Q Consensus        22 L~~L~Ls~n~l~~~~lP~~---i~~L~~L~~L~Ls~N~l~~lP~~i~~L-~~L~~L~L~~n~   79 (372)
                      +..|+|+.|.+  +.++..   +.....|...+|++|.|..+|..+... +.++.|+|.+|+
T Consensus        29 ~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne   88 (177)
T KOG4579|consen   29 LHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE   88 (177)
T ss_pred             hhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh
Confidence            33445555554  223332   222333444455555555555444332 245555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.23  E-value=0.0017  Score=37.44  Aligned_cols=21  Identities=43%  Similarity=0.593  Sum_probs=12.9

Q ss_pred             CCCEEeccCCCCcccchhhhc
Q 017394           46 SLEELHLSGNNFVTLLASIYR   66 (372)
Q Consensus        46 ~L~~L~Ls~N~l~~lP~~i~~   66 (372)
                      +|++|||++|+|+.+|.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.03  E-value=0.0071  Score=54.83  Aligned_cols=84  Identities=25%  Similarity=0.330  Sum_probs=59.7

Q ss_pred             CCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhc-CCCCcEEEccccccccCCCCCCcccccccccC
Q 017394           20 CSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLRGIKLEECKMLQNLPRLPARIQGISLDG   98 (372)
Q Consensus        20 ~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~-L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~   98 (372)
                      .....+||++|.+.  .++ .+..++.|.+|.|+.|.|+.|-..+.. +++|..|.|.+|. ++.+-++-      -+..
T Consensus        42 d~~d~iDLtdNdl~--~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~------pLa~  111 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLD------PLAS  111 (233)
T ss_pred             cccceecccccchh--hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcc------hhcc
Confidence            35678899999884  343 477888999999999999977766654 5679999999887 33333321      1237


Q ss_pred             CcccccccCcCccCC
Q 017394           99 CVSLETLSDVLNLNE  113 (372)
Q Consensus        99 c~sL~~l~~~~n~l~  113 (372)
                      |+.|+.|.+-.|...
T Consensus       112 ~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccceeeecCCchh
Confidence            888888887777554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.98  E-value=0.0046  Score=57.84  Aligned_cols=66  Identities=21%  Similarity=0.231  Sum_probs=47.7

Q ss_pred             CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC--CCc-ccchhhhcCCCCcEEEcccccc
Q 017394           12 LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN--NFV-TLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        12 lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N--~l~-~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      +..-.-.+..|+.|.+.++.++.   -..+-.|++|+.|.++.|  ..+ .++.....+++|++|++++|++
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            44444456677777777777652   234566889999999999  444 6666667779999999999974

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.69  E-value=0.01  Score=55.58  Aligned_cols=13  Identities=23%  Similarity=0.562  Sum_probs=6.9

Q ss_pred             cCCCCcEEEcccc
Q 017394           66 RLSSLRGIKLEEC   78 (372)
Q Consensus        66 ~L~~L~~L~L~~n   78 (372)
                      .|++|+.|.++.|
T Consensus        63 ~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   63 KLPKLKKLELSDN   75 (260)
T ss_pred             CcchhhhhcccCC
Confidence            4455555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.59  E-value=0.0046  Score=66.39  Aligned_cols=86  Identities=22%  Similarity=0.214  Sum_probs=55.6

Q ss_pred             CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccccccc
Q 017394           18 GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLD   97 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~   97 (372)
                      .||+|+.|.+++=.+....+-.-..++++|..||+|+.+++.+ .+|++|++|+.|.+.+=.+..     -..+.  ++-
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~-----~~~l~--~LF  217 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES-----YQDLI--DLF  217 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc-----hhhHH--HHh
Confidence            3688888888876664333333355678888888888888877 688888888888777644321     01111  333


Q ss_pred             CCcccccccCcCcc
Q 017394           98 GCVSLETLSDVLNL  111 (372)
Q Consensus        98 ~c~sL~~l~~~~n~  111 (372)
                      +++.|+.|+.+...
T Consensus       218 ~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  218 NLKKLRVLDISRDK  231 (699)
T ss_pred             cccCCCeeeccccc
Confidence            66677777766543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.49  E-value=0.02  Score=51.99  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCC-CCCCCEEeccCCCCcccch--hhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-LCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~-L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~   77 (372)
                      +||+.|.+...  +.|..++.|.+|.|++|.|+.  |-+.+.. +++|..|.|.+|++..+-.  -+..+++|++|.+-+
T Consensus        47 iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   47 IDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ecccccchhhc--ccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            46777776444  346677788888888888853  5555544 4568888888887775542  355677788887777


Q ss_pred             cc
Q 017394           78 CK   79 (372)
Q Consensus        78 n~   79 (372)
                      |.
T Consensus       123 Np  124 (233)
T KOG1644|consen  123 NP  124 (233)
T ss_pred             Cc
Confidence            76

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.70  E-value=0.012  Score=56.31  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             CcccCCCCCC--cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc--ccchhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV--TLLASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~--~lP~~i~~L~~L~~L~L~   76 (372)
                      |||..|.|+.  .+-.-+.+|+.|++|+|+.|.++ ..|-..-..+++|+.|-|.|..+.  ..-+.+..+++++.|.++
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS  154 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS  154 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence            4556666542  23333456677777777777664 222221134556666666666544  555556666666666666


Q ss_pred             ccc
Q 017394           77 ECK   79 (372)
Q Consensus        77 ~n~   79 (372)
                      .|.
T Consensus       155 ~N~  157 (418)
T KOG2982|consen  155 DNS  157 (418)
T ss_pred             cch
Confidence            664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.024  Score=56.80  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             CcccCCCCCCcC-CccccCCCCCCEEeecCCCCCCCCCCcc-----cCCCCCCCEEeccCCCCcccch--hhhcCCCCcE
Q 017394            1 MPWSSDPVALSL-SSSLSGLCSLTKLDISYCDLGEGAIPSS-----IGDLCSLEELHLSGNNFVTLLA--SIYRLSSLRG   72 (372)
Q Consensus         1 L~Ls~N~i~~~l-P~si~~L~~L~~L~Ls~n~l~~~~lP~~-----i~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~   72 (372)
                      |||++|++...- -.-++.|+.|+.|+++.|.+.+-.+|+.     ...+++|++|++..|++...|.  .+..+.+|+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence            789999976432 2457889999999999999865445654     4567999999999999986663  6777788888


Q ss_pred             EEccccccc
Q 017394           73 IKLEECKML   81 (372)
Q Consensus        73 L~L~~n~~l   81 (372)
                      |....|.+.
T Consensus       331 l~~~~n~ln  339 (505)
T KOG3207|consen  331 LRITLNYLN  339 (505)
T ss_pred             hhccccccc
Confidence            887777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.61  E-value=0.021  Score=30.75  Aligned_cols=16  Identities=38%  Similarity=0.532  Sum_probs=5.9

Q ss_pred             CCCEEeccCCCCcccc
Q 017394           46 SLEELHLSGNNFVTLL   61 (372)
Q Consensus        46 ~L~~L~Ls~N~l~~lP   61 (372)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3445555555544444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.39  E-value=0.015  Score=55.65  Aligned_cols=100  Identities=21%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             CccccCCCCCCEEeecCCCCCCCCCCcccC-CCCCCCEEeccCCCCc---ccchhhhcCCCCcEEEccccccccCCCCCC
Q 017394           13 SSSLSGLCSLTKLDISYCDLGEGAIPSSIG-DLCSLEELHLSGNNFV---TLLASIYRLSSLRGIKLEECKMLQNLPRLP   88 (372)
Q Consensus        13 P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~~L~~L~Ls~N~l~---~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp   88 (372)
                      |-.+..+..|..|-|.++.+-...--..|+ ..+.++.|||.+|.++   .+-.-+.+|+.|++|+|+.|.+...|-.+|
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            333444445556666666653211111222 2466788888888877   455556788888888888887665555554


Q ss_pred             c---ccccc--------------cccCCcccccccCcCccC
Q 017394           89 A---RIQGI--------------SLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        89 ~---~l~~L--------------~~~~c~sL~~l~~~~n~l  112 (372)
                      .   +++.|              .+.+++.++.|+++.|.+
T Consensus       118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            2   23333              123455666777776644

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.004  Score=59.02  Aligned_cols=102  Identities=25%  Similarity=0.209  Sum_probs=74.6

Q ss_pred             CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccccccc
Q 017394           18 GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLD   97 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~   97 (372)
                      .|.+.+.|++.+|.|.+  | .-...|+.|+.|-|+-|++++|- .+..+++|+.|+|..|.+    +.+- .|.  ++.
T Consensus        17 dl~~vkKLNcwg~~L~D--I-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I----~sld-EL~--YLk   85 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD--I-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCI----ESLD-ELE--YLK   85 (388)
T ss_pred             HHHHhhhhcccCCCccH--H-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccc----ccHH-HHH--HHh
Confidence            35677889999999864  3 23567899999999999999886 678999999999999873    2211 122  445


Q ss_pred             CCcccccccCcCccCCCCCCc-----cccccccccccc
Q 017394           98 GCVSLETLSDVLNLNEHQIPN-----IHVHCVDCLKLA  130 (372)
Q Consensus        98 ~c~sL~~l~~~~n~l~~~~~~-----l~~~~~nc~kL~  130 (372)
                      ++++|++|++..|.+.+....     ....+.|..||+
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            899999999999987664321     112566777776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.98  E-value=0.017  Score=33.12  Aligned_cols=22  Identities=45%  Similarity=0.613  Sum_probs=17.5

Q ss_pred             CCCEEeecCCCCCCCCCCcccCCC
Q 017394           21 SLTKLDISYCDLGEGAIPSSIGDL   44 (372)
Q Consensus        21 ~L~~L~Ls~n~l~~~~lP~~i~~L   44 (372)
                      +|++|||++|+++  .||..|++|
T Consensus         1 ~L~~Ldls~n~l~--~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT--SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES--EEGTTTTT-
T ss_pred             CccEEECCCCcCE--eCChhhcCC
Confidence            5899999999995  599887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.05  E-value=0.0021  Score=59.48  Aligned_cols=62  Identities=19%  Similarity=0.141  Sum_probs=34.0

Q ss_pred             ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394           16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      +..+...+.|||+.|++.  .+-..+..++.|..|+++.|.+..+|..++.+..++.+++.+|.
T Consensus        38 i~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~   99 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN   99 (326)
T ss_pred             hhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc
Confidence            444555556666666553  24444555555555555555555555555555555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.77  E-value=0.099  Score=30.99  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=15.8

Q ss_pred             CCCCCEEeccCCCCcccchhh
Q 017394           44 LCSLEELHLSGNNFVTLLASI   64 (372)
Q Consensus        44 L~~L~~L~Ls~N~l~~lP~~i   64 (372)
                      |++|+.|+|++|+++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467788888888888887653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.77  E-value=0.099  Score=30.99  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=15.8

Q ss_pred             CCCCCEEeccCCCCcccchhh
Q 017394           44 LCSLEELHLSGNNFVTLLASI   64 (372)
Q Consensus        44 L~~L~~L~Ls~N~l~~lP~~i   64 (372)
                      |++|+.|+|++|+++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467788888888888887653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.94  E-value=0.068  Score=52.18  Aligned_cols=65  Identities=18%  Similarity=0.144  Sum_probs=32.1

Q ss_pred             CCCCCEEeccCCCCcccch-----hhhcCCCCcEEEccccccccCCCCCCccc--ccccccCCcccccccCcCccCCC
Q 017394           44 LCSLEELHLSGNNFVTLLA-----SIYRLSSLRGIKLEECKMLQNLPRLPARI--QGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        44 L~~L~~L~Ls~N~l~~lP~-----~i~~L~~L~~L~L~~n~~l~~lP~lp~~l--~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      -+.|+++...+|.+..-+.     .+...+.|+.+.+..|.+.      |..+  -...+..|++|+.|++..|.++.
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~------~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR------PEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc------CchhHHHHHHHHhCCcceeeecccchhhh
Confidence            3445555555554443222     2344445555555554421      1111  11244578888888887776643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.80  E-value=0.0084  Score=57.43  Aligned_cols=83  Identities=23%  Similarity=0.305  Sum_probs=56.6

Q ss_pred             ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCc--ccchhhhcCCCCcEEEccccccccCCC-----CC
Q 017394           16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFV--TLLASIYRLSSLRGIKLEECKMLQNLP-----RL   87 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~--~lP~~i~~L~~L~~L~L~~n~~l~~lP-----~l   87 (372)
                      ++.+.+|+.|.|.++.+. ..|-..|..=.+|+.|||+.+ .|+  .+-.-+..++.|..|+|+-|-..+..-     .+
T Consensus       206 Ls~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             HHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence            456677888888888886 567777777888888888875 466  344456788888888888887544321     12


Q ss_pred             CcccccccccCC
Q 017394           88 PARIQGISLDGC   99 (372)
Q Consensus        88 p~~l~~L~~~~c   99 (372)
                      ...+..|++++|
T Consensus       285 se~l~~LNlsG~  296 (419)
T KOG2120|consen  285 SETLTQLNLSGY  296 (419)
T ss_pred             chhhhhhhhhhh
Confidence            344555666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.14  E-value=0.018  Score=54.66  Aligned_cols=66  Identities=23%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch--hhhcCCCCcEEEccccccccCC
Q 017394           16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEECKMLQNL   84 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~n~~l~~l   84 (372)
                      ...|+.|++|.||-|.++.   -..+..+++|+.|+|..|.|..|-.  -+.+|++|+.|.|..|..-+.-
T Consensus        37 c~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEA  104 (388)
T ss_pred             HHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccccc
Confidence            3478999999999999972   3347888999999999999987763  5789999999999999866543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.78  E-value=0.14  Score=55.29  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=46.1

Q ss_pred             cCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccccc
Q 017394           17 SGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        17 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n~~   80 (372)
                      .++++|..||+|+++++.  + ..+++|++|+.|-+.+=.|..-+  ..+..|++|++||+|.-+.
T Consensus       170 ~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             hccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            468889999999999863  4 66888888888877776666444  3567788888888877653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.44  E-value=0.047  Score=53.23  Aligned_cols=107  Identities=18%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             cccCCCCCCc----CCccccCCCCCCEEeecCCCCCC-C--CCCcccCCCCCCCEEeccCCCCcc-----cchhh-hcCC
Q 017394            2 PWSSDPVALS----LSSSLSGLCSLTKLDISYCDLGE-G--AIPSSIGDLCSLEELHLSGNNFVT-----LLASI-YRLS   68 (372)
Q Consensus         2 ~Ls~N~i~~~----lP~si~~L~~L~~L~Ls~n~l~~-~--~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i-~~L~   68 (372)
                      .+++|.|...    +-..+..+++|++|||.+|.++. |  .+...+..+++|+.|++++|.+..     +-..+ ...+
T Consensus       191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p  270 (382)
T KOG1909|consen  191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP  270 (382)
T ss_pred             EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence            3556665422    23456788999999999998852 1  134457778899999999998872     22222 3468


Q ss_pred             CCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccC
Q 017394           69 SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        69 ~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l  112 (372)
                      +|+.|.|.+|.+...--    ..-...+..-+.|+.|.+..|.+
T Consensus       271 ~L~vl~l~gNeIt~da~----~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  271 SLEVLELAGNEITRDAA----LALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCceeccCcchhHHHHH----HHHHHHHhcchhhHHhcCCcccc
Confidence            99999999998543100    00011222467788888888887

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.95  E-value=1.9  Score=35.17  Aligned_cols=59  Identities=14%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEE   77 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~   77 (372)
                      .|.+.++|+.+.+.. .+.  .|+. .+..+++|+.+.+..+ +..++. .+..+.+|+.+.+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            355666777777764 342  2443 3666667777777664 666663 455665677777754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.34  E-value=0.76  Score=43.88  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             cccCCCCCCcCCcccc----CCCCCCEEeecCCCCCCCCCCcc-c-------------CCCCCCCEEeccCCCCcccchh
Q 017394            2 PWSSDPVALSLSSSLS----GLCSLTKLDISYCDLGEGAIPSS-I-------------GDLCSLEELHLSGNNFVTLLAS   63 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~----~L~~L~~L~Ls~n~l~~~~lP~~-i-------------~~L~~L~~L~Ls~N~l~~lP~~   63 (372)
                      +||.|.+....|+.+.    +-+.|..|.|++|.+  |.+... |             ..-+.|+..+...|.|..-|..
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl--Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL--GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCC--CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence            5666776666665433    345666777777766  444321 2             2345666777777766654432


Q ss_pred             -----hhcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           64 -----IYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        64 -----i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                           +..-..|+.+.+..|.+-   |+--..+-.+.+..|.+|+.|++..|.++.
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhh
Confidence                 112235666666666421   221112233456688899999998887654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.51  E-value=0.59  Score=28.12  Aligned_cols=17  Identities=41%  Similarity=0.595  Sum_probs=12.3

Q ss_pred             CCCEEeccCCCCcccch
Q 017394           46 SLEELHLSGNNFVTLLA   62 (372)
Q Consensus        46 ~L~~L~Ls~N~l~~lP~   62 (372)
                      +|++|++++|+++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56777777777777774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.46  E-value=0.052  Score=52.18  Aligned_cols=84  Identities=20%  Similarity=0.315  Sum_probs=57.2

Q ss_pred             CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccccccCCCCCCcccccccccCC
Q 017394           21 SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGC   99 (372)
Q Consensus        21 ~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c   99 (372)
                      .|+.|||++-.++...+-.-+..+.+|+.|-|.|+.+. .+-..|.+=.+|+.|+|+.|.-..      .+--.|-+.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHhh
Confidence            47788888877753334444566778888888888888 677778888888888888886322      12122445678


Q ss_pred             cccccccCcCc
Q 017394          100 VSLETLSDVLN  110 (372)
Q Consensus       100 ~sL~~l~~~~n  110 (372)
                      +.|..|.++-.
T Consensus       260 s~L~~LNlsWc  270 (419)
T KOG2120|consen  260 SRLDELNLSWC  270 (419)
T ss_pred             hhHhhcCchHh
Confidence            88887776644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=81.25  E-value=0.44  Score=45.43  Aligned_cols=112  Identities=17%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             CcccCCCCCCcCC----ccccCCCCCCEEeecCCCCC--CCCCCc-------ccCCCCCCCEEeccCCCCc-ccch----
Q 017394            1 MPWSSDPVALSLS----SSLSGLCSLTKLDISYCDLG--EGAIPS-------SIGDLCSLEELHLSGNNFV-TLLA----   62 (372)
Q Consensus         1 L~Ls~N~i~~~lP----~si~~L~~L~~L~Ls~n~l~--~~~lP~-------~i~~L~~L~~L~Ls~N~l~-~lP~----   62 (372)
                      ++||+|.|...--    ..|.+-.+|+..++++--..  ...+|.       .+-+++.|+..+||.|-|. ..|.    
T Consensus        35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d  114 (388)
T COG5238          35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD  114 (388)
T ss_pred             EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence            4677777765422    23444566666666654221  012333       3456788999999999887 5554    


Q ss_pred             hhhcCCCCcEEEccccccccCCCC--CCcccccc----cccCCcccccccCcCccCC
Q 017394           63 SIYRLSSLRGIKLEECKMLQNLPR--LPARIQGI----SLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        63 ~i~~L~~L~~L~L~~n~~l~~lP~--lp~~l~~L----~~~~c~sL~~l~~~~n~l~  113 (372)
                      -|.+-+.|.+|.|++|- +|.+-.  +-..+..|    .+.+=+.|+++....|++.
T Consensus       115 ~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         115 LISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             HHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            35666788999998886 342211  11112222    3345677788877777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.12  E-value=0.046  Score=50.83  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |||++|.+.. +-..++.+..|..|+++.|.+  ..+|.+++.+..+..+++..|+.+.+|.+++.+++++++++..+.+
T Consensus        47 ld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   47 LDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ehhhhhHHHh-hccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence            5778887643 334567788899999999998  5699999999999999999999999999999999999999998875


Q ss_pred             c
Q 017394           81 L   81 (372)
Q Consensus        81 l   81 (372)
                      .
T Consensus       124 ~  124 (326)
T KOG0473|consen  124 F  124 (326)
T ss_pred             h
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
                   L  L  + I    L E  +P ++     LE L L+ N    L ASI  L+ L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152

Query: 71  RGIKLEECKMLQNLPR-LPARIQGISLDGCVSLETLS 106
           R + +  C  L  LP  L +        G V+L++L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
              S    GL +L  L + +  +    +P+SI +L +L+ L +  +    L  +I+ L  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNE-HQIPN 118
           L  + L  C  L+N P            G   L+ L  + + +    +P 
Sbjct: 231 LEELDLRGCTALRNYPP--------IFGGRAPLKRL-ILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 11  SLSSSLSGLCSLTKLDISYC--------DLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA 62
           +L +S++ L  L +L I  C         L           L +L+ L L      +L A
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200

Query: 63  SIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETL 105
           SI  L +L+ +K+     L  L          ++     LE L
Sbjct: 201 SIANLQNLKSLKIRNSP-LSALGP--------AIHHLPKLEEL 234

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 11  SLSSSLSGLCSLTKLDISYC-DLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLS 68
           +      G   L +L +  C +L    +P  I  L  LE+L L G   ++ L + I +L 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 69  SLRGIKLEECKMLQNLPRLP 88
           +   I +      Q     P
Sbjct: 302 ANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGE-GAIPSSIGDLCS--LEELHLSGNNFVTLLASIYR 66
            +   S     +     I         A    + D        L L            +R
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR 102

Query: 67  LSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           LS L+ + ++    L  LP         ++     LETL+
Sbjct: 103 LSHLQHMTIDAAG-LMELPD--------TMQQFAGLETLT 133

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 8/100 (8%)

Query: 7   PVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR 66
                  +       +  + I Y +L    + +S+  +  L  L    N     L +   
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351

Query: 67  LSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
              L  + L        +  +PA   G        +E LS
Sbjct: 352 EIKLASLNLAYN----QITEIPANFCG----FTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIK 74
           SL+    +T L +       G +P +IG L  LE L L  +    +   ++    +    
Sbjct: 76  SLNSNGRVTGLSLEGFGA-SGRVPDAIGQLTELEVLALGSHGE-KVNERLFGPKGISANM 133

Query: 75  LEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPN 118
            +E K    +      +     +    L       +  +  I  
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 17/105 (16%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL---------L 61
           +       L  LT +++  C      +P+ +  L  ++ ++++ N  ++          L
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 62  ASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           A       ++ I +     L+  P +       SL     L  L 
Sbjct: 299 ADAPVGEKIQIIYIGYNN-LKTFP-VET-----SLQKMKKLGMLE 336

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSI--GDLCSLEELHLSGNNFVTLLASIYRLS 68
             + +      LT +D+ +  L +  +        L  L  + LS N+F          S
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536

Query: 69  SLRGIKLEECKMLQNLPRLPARIQGI---SLDGCVSLETLS 106
           +L+G  +              R        +  C SL  L 
Sbjct: 537 TLKGFGI-----RNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 11/116 (9%), Positives = 32/116 (27%), Gaps = 21/116 (18%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGE------------------GAIPSSIGDLCSLEELHL 52
            +S ++  L  L +  +                                 +L  L ++ +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 53  SGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQGI-SLDGCVSLETLS 106
                +T L   +  L  ++ I +   +   +  +L    Q +        ++ + 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKIQIIY 311

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGE------GAIPSSIGDLCSLEELHLSGNNFVTLLAS 63
           +        +  ++ +D SY ++G         +  +     ++  ++LS N        
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 64  IY-RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETL 105
           ++   S L  I L     L  +P+   + +  +      L ++
Sbjct: 452 LFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHL------SGNNFVTLL-A 62
           LS     + L  L  +D+SY    +   P+   +  +L+   +       GN  +     
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 63  SIYRLSSLRGIKLEECKMLQNLP 85
            I    SL  +++     ++ + 
Sbjct: 561 GITLCPSLTQLQIGSND-IRKVN 582

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 13/119 (10%), Positives = 30/119 (25%), Gaps = 26/119 (21%)

Query: 14  SSLSGLCSLTKLDISYCDL----GEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           + +         D+    +     + +I  S        ++    NN   +  ++ RL+ 
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK 207

Query: 70  LRGIKLEECK----------------MLQNLPRLPARIQGISLDGCVSLETLSDVLNLN 112
           LR   +                      Q       +   +       L  + +V N  
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-----DLTDV-EVYNCP 260

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 15/117 (12%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
           +   S S L  LT +++  C      +P  + DL  L+ L+++ N  ++        + L
Sbjct: 482 NEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 71  RGIKLEECKMLQ-------NLPRLPARIQGISLDGCVSLETLSDVLNLNE-HQIPNI 119
                +    +Q       NL   PA     SL   V L  L      N+   +   
Sbjct: 541 ADD-EDTGPKIQIFYMGYNNLEEFPA---SASLQKMVKLGLLD--CVHNKVRHLEAF 591

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 16/114 (14%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSI--GDLCSLEELHLSGNNFVTLLASIYRLS 68
               +      LT +D+ +  L    +        L  L  + +S N F +        S
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776

Query: 69  SLRGIKLEECKMLQN---LPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
            L+   +   +  +    L + P       +  C SL      L +  + I  +
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPT-----GITTCPSLIQ----LQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLS 68
              S+SL  +  L  LD  +  +       + G    L +L L  N    +         
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKV---RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 69  SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETL 105
            + G+     K L+ +P         +      + ++
Sbjct: 620 QVEGLGFSHNK-LKYIPN------IFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
            L+        +    + Y +L E    +S+  +  L  L    N     L +      L
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKL 597

Query: 71  RGIKLEECKMLQNLP----RLPARIQGISLDGCVSLETLSDVLNL 111
             +KL+  + ++ +P        +++G+       L+ + ++ N 
Sbjct: 598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNA 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 9/111 (8%), Positives = 25/111 (22%), Gaps = 17/111 (15%)

Query: 13  SSSLSGLCSLTKLDISYCDLGE------GAIPSSIGDLCSLEELHLSGNNFVTLLASIY- 65
           +   +    ++ + +S   +             +  +   L  + L  N   +L      
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 66  -RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ 115
             L  L  + +       + P                L+        +   
Sbjct: 750 TTLPYLSNMDVSYNC-FSSFPT--------QPLNSSQLKAFGIRHQRDAEG 791

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIK 74
            L     +T L ++     +G +P +IG L  L+ L    ++         RL     + 
Sbjct: 318 DLDNNGRVTGLSLAGFGA-KGRVPDAIGQLTELKVLSFGTHS----ETVSGRLFGDEELT 372

Query: 75  LEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
            +  +  ++   +    + + LD    L    D+L    ++ P +
Sbjct: 373 PDMSEERKHR--IRMHYKKMFLDYDQRLNLS-DLLQDAINRNPEM 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 25/157 (15%)

Query: 4   SSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL--- 60
            S+   +S S       + + + +SY ++ +            +  + LS N   ++   
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 61  -----LASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ 115
                  +      L  I L   K L +L                 L      ++++ + 
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNK-LTSLSD------DFRATTLPYLS----NMDVSYNC 764

Query: 116 IPNIHVHCVDC-----LKLAGNYDLALSLLKEYIKNS 147
             +     ++        +    D   + +       
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHL------SGNNFVTLL-A 62
           LS     + L  L+ +D+SY        P+   +   L+   +       GN  +     
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 63  SIYRLSSLRGIKLEECKMLQNLP 85
            I    SL  +++     ++ + 
Sbjct: 801 GITTCPSLIQLQIGSND-IRKVD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 13/113 (11%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGE-----GAIPSSIGDLCSLEELHLSGNNFVTLLASI 64
           ++ +  +  +   +++ +    +G        I  +I  L  L+ ++ + + F     ++
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467

Query: 65  YRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117
               +      +  K  +N           S      L  +      N  Q+P
Sbjct: 468 DWEDAN----SDYAKQYENEEL--------SWSNLKDLTDVELYNCPNMTQLP 508

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 12/109 (11%), Positives = 33/109 (30%), Gaps = 10/109 (9%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLSSLR 71
               +    +  L  S+  L       +   +  +  +  S N   +   +I   +   +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 72  GIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
           GI      +  N + + P  +          +      + L+ + + +I
Sbjct: 672 GINASTVTLSYNEIQKFPTEL----FATGSPIS----TIILSNNLMTSI 712

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSS 69
            +  +LS    L  L +S+  L  G IPSS+G L  L +L L  N     +   +  + +
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           L  + L+   +   +P          L  C +L  +S
Sbjct: 468 LETLILDFNDLTGEIPS--------GLSNCTNLNWIS 496

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 10  LSLSS--------SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TL 60
           L +SS         L    +L  LDIS   L  G    +I     L+ L++S N FV  +
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 61  LASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDG-CVSLETLS 106
                 L SL+ + L E K    +P          L G C +L  L 
Sbjct: 264 PPLP--LKSLQYLSLAENKFTGEIPD--------FLSGACDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSS 69
           ++ SSL  L  L  L +    L EG IP  +  + +LE L L  N+    + + +   ++
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 70  LRGIKLEECKM-------LQNLPRL 87
           L  I L   ++       +  L  L
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENL 516

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 13/90 (14%)

Query: 5   SDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI 64
           ++ V   LS        L  L IS   +  G +   +    +LE L +S NNF T +  +
Sbjct: 166 ANVVGWVLSDGCG---ELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIPFL 219

Query: 65  YRLSSLRGIKLEECKM-------LQNLPRL 87
              S+L+ + +   K+       +     L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTEL 249

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF---VTLLASIYRL 67
           ++SSSL  L  L  L +S   +  G++        SL  L LS N+    VT L S+   
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 68  SSLR 71
           S L+
Sbjct: 126 SGLK 129

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 11  SLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRL 67
            +   LSG C +LT LD+S      GA+P   G    LE L LS NNF   L   ++ ++
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 68  SSLRGIKL 75
             L+ + L
Sbjct: 343 RGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 21  SLTKLDISYCDL--GEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEEC 78
            +T +D+S   L  G  A+ SS+  L  LE L LS ++    ++     +SL  + L   
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 79  KMLQNLPRLPARIQGISLDGCVSLETLS 106
            +   +  L       SL  C  L+ L+
Sbjct: 111 SLSGPVTTLT------SLGSCSGLKFLN 132

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSS 69
            + S LS   +L  + +S   L  G IP  IG L +L  L LS N+F   + A +    S
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 70  LRGIKL 75
           L  + L
Sbjct: 540 LIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 9   ALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIG-DLCSLEELHLSGNNFV----TLLAS 63
            ++  +SL     L  L++S   L +     S G  L SLE L LS N+           
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 64  IYRLSSLRGIKLEECKM-----LQNLPRL 87
                 L+ + +   K+     +     L
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCVNL 202

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF 57
             S +     S+  LD+SY  L  G IP  IG +  L  L+L  N+ 
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFV-TLLASIYRLS 68
           ++         L  L +S  +   G +P  ++  +  L+ L LS N F   L  S+  LS
Sbjct: 309 AVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 69  -SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
            SL  + L        +         +  +   +L+ L 
Sbjct: 368 ASLLTLDLSSNNFSGPIL------PNLCQNPKNTLQELY 400

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF 57
            +   +  L +L  L +S      G IP+ +GD  SL  L L+ N F
Sbjct: 505 EIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 11  SLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLC--SLEELHLSGNNFV-TLLASIYR 66
            L  SL+ L  SL  LD+S  +   G I  ++      +L+EL+L  N F   +  ++  
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 67  LSSLRGIKL 75
            S L  + L
Sbjct: 417 CSELVSLHL 425

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV----TLLASIYRLSS 69
             +  +  L  L++ + D+  G+IP  +GDL  L  L LS N         ++++  L+ 
Sbjct: 650 KEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 70  L 70
           +
Sbjct: 709 I 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF 57
             +  L  L  LD+S   L +G IP ++  L  L E+ LS NN 
Sbjct: 674 DEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNL 716

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 19/122 (15%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           ++  S+L  L +L +L ++  ++ +    S + +L  +  L+L  N+ ++ L+ +  ++ 
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 70  LRGIKLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIP 117
           L  + + E K+     + NL  L +      +I+ IS L    SL           +QI 
Sbjct: 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY----FTAYVNQIT 212

Query: 118 NI 119
           +I
Sbjct: 213 DI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           ++   +   L S+TKL ++   +        I  L +LE L+L+GN  +T ++ +  L  
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQ-ITDISPLSNLVK 89

Query: 70  LRGIKLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIP 117
           L  + +   K+     LQNL  L         I  IS L     + +L+   N N   + 
Sbjct: 90  LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 118 NI 119
            +
Sbjct: 150 PL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 20/118 (16%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
              + L    +  +    + +     +  +L S+ +L ++G   V  +  I  L++L  +
Sbjct: 16  FPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK-VASIQGIEYLTNLEYL 71

Query: 74  KLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI 119
            L   ++     L NL +L        +I  IS L    +L      L LNE  I +I
Sbjct: 72  NLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRE----LYLNEDNISDI 125

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 18/104 (17%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRG 72
           +++  L  L  L++    + +    S + +L  L  L L+ N         I  L++L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQI 116
           + L +   + ++           L     +++     +     I
Sbjct: 316 LFLSQNH-ITDIR---------PLASLSKMDS----ADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 20/120 (16%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           ++  + ++ +  L  L I    + +    S + +L  L  L +  N  ++ + ++  L+ 
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQ-ISDINAVKDLTK 266

Query: 70  LRGIKLEECKMLQNLPRLPARIQGIS-LDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLK 128
           L+ + +   +           I  IS L+    L +    L LN +Q+ N  +  +  L 
Sbjct: 267 LKMLNVGSNQ-----------ISDISVLNNLSQLNS----LFLNNNQLGNEDMEVIGGLT 311

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSL 70
             + SGL SL KL     +L        IG L +L+EL+++ N   +         L++L
Sbjct: 93  LGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 71  RGIKLEECKMLQNLPRLPARIQGI---SLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCL 127
             + L   K           IQ I    L     +  L+  L+L+ + +  I       +
Sbjct: 152 EHLDLSSNK-----------IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 128 KL 129
           +L
Sbjct: 201 RL 202

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR 71
           S S      L  LD+S C++ +     +   L  L  L L+GN   +L   +   LSSL+
Sbjct: 45  SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
            +   E  +        A ++   +    +L+ L+
Sbjct: 104 KLVAVETNL--------ASLENFPIGHLKTLKELN 130

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSS 69
           + +   +GL SL  L ++     E  +P    +L +L  L LS      L   +   LSS
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           L+ + +       +L                SL+ L 
Sbjct: 496 LQVLNMSHNN-FFSLDTF-------PYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 18/114 (15%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLG-EGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLS 68
              + S   L SL  LD+S   L  +G    S     SL+ L LS N  +T+ ++   L 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 69  SLRGIKLEECK--------MLQNLPRLPA------RIQGI---SLDGCVSLETL 105
            L  +  +           +  +L  L          +       +G  SLE L
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLE----ELHLSGNNFVTLLASIY 65
             L    S L +L  LD+S   + +    + +  L  +      L LS N    +    +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 66  RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117
           +   L  + L       N+ +         + G   LE    VL    ++  
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKT-------CIQGLAGLEVHRLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 21  SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECK 79
           S   LD+S+  L       S      L+ L LS     T+   +   LS L  + L    
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 80  MLQNLPRLPARIQGISLDGCVSLETLS 106
            +Q+L          +  G  SL+ L 
Sbjct: 88  -IQSLALG-------AFSGLSSLQKLV 106

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSS 69
           ++SS+  GL  L  LD  + +L + +  S    L +L  L +S  +           LSS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           L  +K+      +N                 +L  L 
Sbjct: 447 LEVLKMAGNSFQENFLP-------DIFTELRNLTFLD 476

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR--LSSLR 71
           ++ + L SL  L++S+ +            L SL+ L  S N+ +T      +   SSL 
Sbjct: 488 TAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 72  GIKL 75
            + L
Sbjct: 547 FLNL 550

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
            +LSGL SLT LDIS+    +  + + I  L  +  + LS N  +T +  +  L  L+ +
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164

Query: 74  KLEECKM-----LQNLPRL 87
            ++   +     +++ P+L
Sbjct: 165 NIQFDGVHDYRGIEDFPKL 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF-VTLLASIYRLSSLRG 72
           + +SGL +L +L I   D+    I  ++  L SL  L +S +    ++L  I  L  +  
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
           I L     + ++           L     L++    LN+    + + 
Sbjct: 141 IDLSYNGAITDIM---------PLKTLPELKS----LNIQFDGVHDY 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 45/293 (15%), Positives = 83/293 (28%), Gaps = 91/293 (31%)

Query: 16  LSGLCSLTKLDISYCDLGEGA--IPSSIGDLCSLEELHLSGNNFVT---LLASIYRLSSL 70
           L  L    ++D ++    + +  I   I  + +     L    +     +L ++    + 
Sbjct: 202 LQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 71  RGIKLEECKML------QNLPRL-PARIQGISLDGCV-------SLETLSDVLNLNEHQI 116
               L  CK+L      Q    L  A    ISLD              L   L+     +
Sbjct: 260 NAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 117 PNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSS 176
           P           L  N    LS++ E I++   +W             + +++ N +  +
Sbjct: 319 PR--------EVLTTN-PRRLSIIAESIRDGLATW-------------DNWKHVNCDKLT 356

Query: 177 ITIST-----PPKTYKNSKLVGYAACCVFRIPKYSLPYPEHDLCV-WSTDGYGPYGYRIS 230
             I +      P  Y+      +    VF  P  S   P   L + W             
Sbjct: 357 TIIESSLNVLEPAEYRKM----FDRLSVF--PP-SAHIPTILLSLIW------------- 396

Query: 231 FGKQFGQAVSDHLFLCYKNREDISEV--EFSSRSGLELK----RCGLHPIYVH 277
                              + D+  V  +    S +E +       +  IY+ 
Sbjct: 397 ---------------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 16/144 (11%)

Query: 10  LSLS-------SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA 62
           L+L                L  LD+S   L    +         +  + L  N  V +  
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 63  SIYRLSSLRGIKLE----ECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPN 118
           ++    +L    L      C  L++      R+Q ++     +++ L+            
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ---TVKKLTGQNEEECTVPTL 288

Query: 119 IHVHCVDCLKLAGNYDLALSLLKE 142
            H     C  L   +   L  L  
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
           +S      ++ +LD+S   L      + +     LE L+LS N        +  LS+LR 
Sbjct: 27  ASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRT 84

Query: 73  IKLEECKMLQNLPRLPA---------RIQGISLDGCVSLETLS 106
           + L     +Q L   P+          I  +S       + + 
Sbjct: 85  LDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
                    +  LD+   ++             +LE L+L  N    +   +   + L+ 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKT 195

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           + L   K L  +                 +  +S
Sbjct: 196 LDLSSNK-LAFMGP--------EFQSAAGVTWIS 220

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           L  +  L  L +L  LD++   +        +    S+E LH + NN   +  S      
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSR--GQG 121

Query: 70  LRGIKLEECK-------MLQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQI 116
            + I L   K             R+         I  ++     +     + LNL  + I
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 117 PNI 119
            ++
Sbjct: 182 YDV 184

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSL 70
             LS + +L  LD SY  L  G +P SI  L +L  +   GN     +  S    S L
Sbjct: 119 DFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRG 72
            +++ L  L  L I++ ++  GAIP  +  + +L  L  S N    TL  SI  L +L G
Sbjct: 95  PAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 73  IKL 75
           I  
Sbjct: 154 ITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 4   SSDPVALSLSS-SLSG-------LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN 55
           S    ++++S   L+G         +L  +D+S   L EG      G   + +++HL+ N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKN 231

Query: 56  NFVTLLASIYRLSSLRGIKL 75
           +    L  +    +L G+ L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 14  SSLSGLCSLTKLDISYCDL-GEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIYRLSSL 70
            + +    +  LD+S  +L     IPSS+ +L  L  L++ G N +   +  +I +L+ L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 71  RGIKL 75
             + +
Sbjct: 104 HYLYI 108

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLS 68
             + SSL+ L  L  L I   +   G IP +I  L  L  L+++  N    +   + ++ 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 69  SLRGIKLEECKM-------LQNLPRL 87
           +L  +      +       + +LP L
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNL 151

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF 57
             +    +L  LD+    +  G +P  +  L  L  L++S NN 
Sbjct: 238 GKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 21/113 (18%)

Query: 19  LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEEC 78
             SL  LD+    L    +P        LE ++   N    L      L  L    +   
Sbjct: 119 PASLKHLDVDNNQLTM--LPELPA---LLEYINADNNQLTMLPELPTSLEVLS---VRNN 170

Query: 79  KMLQNLPRLPARIQGISLDG------------CVSLETLSDVLNLNEHQIPNI 119
           + L  LP LP  ++ + +                  E         E++I +I
Sbjct: 171 Q-LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 18/146 (12%)

Query: 12  LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
           L+       SL  L +    L    +P       SLE L +S N   +L A   R     
Sbjct: 152 LTMLPELPTSLEVLSVRNNQLTF--LPELPE---SLEALDVSTNLLESLPAVPVRNHHSE 206

Query: 72  GIKLEECKMLQN--LPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKL 129
             + E     +   +  +P      ++       T    + L ++ + +     +     
Sbjct: 207 --ETEIFFRCRENRITHIPE-----NILSLDPTCT----IILEDNPLSSRIRESLSQQTA 255

Query: 130 AGNYDLALSLLKEYIKNSECSWRDFC 155
             +Y                  R   
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 16/102 (15%)

Query: 21  SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80
            +T L+I+   L    +P       SLE L    N   TL      L  L    ++  + 
Sbjct: 81  QITVLEITQNALIS--LPELPA---SLEYLDACDNRLSTLPELPASLKHLD---VDNNQ- 131

Query: 81  LQNLPRLPARIQGISLDGCVSLETLSD------VLNLNEHQI 116
           L  LP LPA ++ I+ D    L  L +      VL++  +Q+
Sbjct: 132 LTMLPELPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 28/114 (24%), Gaps = 13/114 (11%)

Query: 17  SGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEE----LHLSGNNFVTLLASIYRLSSLRG 72
               SL  LD+S   L    +P+        EE         N    +  +I  L     
Sbjct: 177 ELPESLEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234

Query: 73  IKLEE-------CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
           I LE+        + L      P              +  +    L +      
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
           +S      ++ +LD+S   L      + +     LE L+LS N        +  LS+LR 
Sbjct: 27  ASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRT 84

Query: 73  IKLEECKMLQNLPRLPA---------RIQGISLDGCVSLETLS 106
           + L     +Q L   P+          I  +S       + + 
Sbjct: 85  LDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 13/138 (9%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
                   L  LD+S   L    +         +  + L  N  V +  ++    +L   
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 74  KLE----ECKMLQNLPRLPARIQGISLDGCVSLETLSD-------VLNLNEHQIPNIHVH 122
            L      C  L++      R+Q ++      L   ++       + +   +   ++   
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 123 CVDCLKLAGNYDLALSLL 140
             D L      + AL   
Sbjct: 303 FADRLIALKRKEHALLSG 320

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
                    +  LD+   ++             +LE L+L  N    +   +   + L+ 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKT 195

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
           + L   K L  +                 +  +S
Sbjct: 196 LDLSSNK-LAFMGP--------EFQSAAGVTWIS 220

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           L  +  L  L +L  LD++   +        +    S+E LH + NN   +  S      
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSR--GQG 121

Query: 70  LRGIKLEECK-------MLQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQI 116
            + I L   K             R+         I  ++     +     + LNL  + I
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 117 PNI 119
            ++
Sbjct: 182 YDV 184

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 19/115 (16%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS--IYRL 67
           ++  S+   L  L  LDISY +  +         L SL  L ++GN+F     S      
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 68  SSLRGIKLEECK-------MLQNLPRLPA------RIQGI---SLDGCVSLETLS 106
           ++L  + L +C+       +   L RL         +  +     +   SL TL 
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF--VTLLASIYRLSSL 70
             S SGL SL  L      L        IG L +L++L+++ N      L A    L++L
Sbjct: 97  PGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKL 129
             + L     +Q +           L        ++  L+++ + I  I       +KL
Sbjct: 156 VHVDLSYNY-IQTITVN-------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR 71
           S S S    L  LD+S C++ E     +   L  L  L L+GN   +    S   L+SL 
Sbjct: 49  SYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 72  GIKLEECK-------MLQNLPRLPA------RIQGISLD----GCVSLETLSDVLNLN 112
            +   E K        +  L  L         I    L        +L  +   L+ N
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD--LSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA--SIYRLSSL 70
           S S  G  SL  LD+S+       + ++   L  L+ L    +    +    +   L  L
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
             + +      +               G  SL TL 
Sbjct: 427 LYLDISYTN-TKIDFDG-------IFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLR 71
                 L  L  L++S+ +L      S    L SL  L  S N   T    +     SL 
Sbjct: 490 WGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 72  GIKL 75
              L
Sbjct: 549 FFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 21  SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79
           S   +D+S+  L +     S  +   L+ L LS     T+   + + L  L  + L    
Sbjct: 33  STKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 80  MLQNLPRLPARIQGISLDGCVSLETLS 106
            +Q+           S  G  SLE L 
Sbjct: 92  -IQSFSPG-------SFSGLTSLENLV 110

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR 71
           S + S L  L  LD+   ++G+         L ++ E++LS N ++ L   S   + SL+
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
            + L     L+N+   P+           +L  L 
Sbjct: 458 RLMLRRVA-LKNVDSSPS-----PFQPLRNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 13  SSSLSGLC--SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSS 69
           +++  GL   +LT LD+SY +L       S   L  LE   L  NN   L + S++ L +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVD---- 125
           +R + L+     Q++    A +  I       L+ L   LN+ ++ IP I  +       
Sbjct: 298 VRYLNLKRSFTKQSISL--ASLPKIDDFSFQWLKCLE-HLNMEDNDIPGIKSNMFTGLIN 354

Query: 126 --CLKLAGNY 133
              L L+ ++
Sbjct: 355 LKYLSLSNSF 364

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR 71
           +++ +    LT LD+ +  +     P     L  L+ L+L  N    L   +    ++L 
Sbjct: 42  AANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 72  GIKLEECKM-------LQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQIPN 118
            + L    +             L         +    L   V LE L   L L+ ++I  
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ-ELLLSNNKIQA 159

Query: 119 IHVHCVDCLKLAGNYDLALS 138
           +    +D    +    L LS
Sbjct: 160 LKSEELDIFANSSLKKLELS 179

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 18/152 (11%)

Query: 4   SSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS 63
                       L GL  L  L++      +        DL  L+ + L  NN  TL AS
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 64  I-YRLSSLRGIKLEE-----------CKMLQNLPRLPARIQGISLDG-CVSLETLSDVLN 110
           +     SL+ + L++               +NL  L   ++    D  C S+    + +N
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL--DMRFNPFDCTCESIAWFVNWIN 636

Query: 111 LNEHQIPNI--HVHCVDCLKLAGNYDLALSLL 140
                IP +  H  C       G         
Sbjct: 637 ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 26/121 (21%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL---------L 61
           S  S    L +LT LD+S  ++        +  L  LE L L  NN   L         +
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNI-ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 62  ASIYRLSSLRGIKLEECK-------MLQNLPRLPA------RIQGI---SLDGCVSLETL 105
             +  LS L  + LE          + ++L  L         +  +     +  VSL++L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 106 S 106
           +
Sbjct: 590 N 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 13  SSSLSGLCSLTKLDISYCDL-GEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSL 70
            +S + + SL +L +    L    + PS    L +L  L LS NN   +    +  L  L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLS 106
             + L+   + +             L G   L  L+
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 21/104 (20%)

Query: 20  CSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC 78
            S    D S+  L +  +P  +    ++  L+L+ N    L  A+  R S L  + +   
Sbjct: 4   VSHEVADCSHLKLTQ--VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 79  KM-------LQNLPRLPA------RIQGI---SLDGCVSLETLS 106
            +        Q LP L         +  +   +   C +L  L 
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI----YRLSSL 70
            +    SL KL++S   + +   P     +  L  L L+       L          +S+
Sbjct: 166 DIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 71  RGIKLEECKMLQNLP 85
           R + L   + L    
Sbjct: 225 RNLSLSNSQ-LSTTS 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 21  SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80
              +L+++   L    +P        LE L  S N+   L      L SL          
Sbjct: 72  QAHELELNNLGLSS--LPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNN---- 122

Query: 81  LQNLPRLPARIQGISLDGCVSLETLSDVLNLN 112
           L+ L  LP  ++ + +     LE L ++ N +
Sbjct: 123 LKALSDLPPLLEYLGVSNN-QLEKLPELQNSS 153

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 14/115 (12%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
           SL        SL  +      L E      + +L  L  ++   N   TL        SL
Sbjct: 206 SLKKLPDLPLSLESIVAGNNILEE---LPELQNLPFLTTIYADNNLLKTLPDLP---PSL 259

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSD------VLNLNEHQIPNI 119
             + + +   L +LP LP  +  + +        LS+       LN + ++I ++
Sbjct: 260 EALNVRDNY-LTDLPELPQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 17  SGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLE 76
           +    L +L  S+  L E  +P       +L++LH+  N           +  LR     
Sbjct: 334 ALPPRLERLIASFNHLAE--VPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR----- 383

Query: 77  ECKMLQNLPRLPARIQGISLDGCVSLETLSDVLN 110
               L  +P LP  ++ + ++    L    D+  
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETN-PLREFPDIPE 416

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           L     L  L  LT +      L    +P       SLE L++  N    L      L+ 
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKT--LPDLPP---SLEALNVRDNYLTDLPELPQSLTF 281

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSD------VLNLNEHQI 116
           L    + E      L  LP  +  ++      + +L D       LN++ +++
Sbjct: 282 L---DVSENI-FSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
           SL        SL  +      L E  +P  + +L  L  ++   N+   L      L S+
Sbjct: 164 SLKKLPDLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESI 220

Query: 71  --RGIKLEECKMLQNLPRL 87
                 LEE   LQNLP L
Sbjct: 221 VAGNNILEELPELQNLPFL 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 21/123 (17%)

Query: 10  LSLS-SSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRL 67
            + +  +LS L   L  L +S   L +  +P  + +   L+ + +  N+   L      L
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSL 175

Query: 68  SSL--RGIKLEECKMLQNLPRLPARIQGISLDG---------CVSLETLSDVLNLNEHQI 116
             +     +LEE   LQNLP L      I  D           +SLE++    N    ++
Sbjct: 176 EFIAAGNNQLEELPELQNLPFL----TAIYADNNSLKKLPDLPLSLESI-VAGNNILEEL 230

Query: 117 PNI 119
           P +
Sbjct: 231 PEL 233

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
              S       +L  L+ S  ++    +        SLEEL++S N  + L A   RL  
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEIRS--LCDLPP---SLEELNVSNNKLIELPALPPRLER 341

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVL 109
           L          L  +P LP  ++ + ++    L    D+ 
Sbjct: 342 LI---ASFNH-LAEVPELPQNLKQLHVEYN-PLREFPDIP 376

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
                 +  L +L IS   L    +      + +L+ L LS N+ + +  +  +   L  
Sbjct: 271 YHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328

Query: 73  IKLEECKM-------LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVD 125
           + L+   +          L  L   +     D C SL  L    N+    + +   HC  
Sbjct: 329 LYLDHNSIVTLKLSTHHTLKNL--TLSHNDWD-CNSLRAL--FRNVARPAVDDADQHCKI 383

Query: 126 CLKL 129
             +L
Sbjct: 384 DYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 29/144 (20%)

Query: 10  LSLSS------SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL--- 60
           L LSS       LS + SL   ++SY  L      S++    ++EEL  S N+   +   
Sbjct: 176 LQLSSNRLTHVDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGP 229

Query: 61  -LASIYRLSSLRGIKLEECKMLQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNE 113
               +  L  L+   L +   L N P L         ++ I     V ++ L   L ++ 
Sbjct: 230 VNVELTIL-KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE-RLYISN 287

Query: 114 HQIPNIHVHCVDC-----LKLAGN 132
           +++  ++++         L L+ N
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 20/111 (18%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSSL 70
           ++ L     +  L+++   + E  I +       ++++L++  N    L   +++ +  L
Sbjct: 68  AALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125

Query: 71  RGIKLEECK-------MLQNLPRLP---------ARIQGISLDGCVSLETL 105
             + LE          +  N P+L           RI+  +     SL+ L
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
                    LT L +S  +L    I         SL+ L LS N    +  S+  + SL 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLF 195

Query: 72  GIKLEECKMLQNLPRLPA---------RIQGISLDGCVSLETLS 106
              +     L  L    A          I  +     V L  L 
Sbjct: 196 HANVSYNL-LSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLR 71
           +++ S L +LT LD++ C +       +      L+ L L+ N  + +  +      +L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 72  GIKLEECK-------MLQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQIPN 118
            +   +          L N   L +       I  I L      E L  VL+   + I  
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK-VLDFQNNAIHY 167

Query: 119 IHVHCVDCLKLAGNYDLALS 138
           +    +  L+ A N  L L+
Sbjct: 168 LSKEDMSSLQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 14/135 (10%)

Query: 8   VALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR- 66
             +  ++SL  L  L  L +S+CDL       +   L  +  + LS N   +        
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 67  -------LSS--LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117
                  L+S  +  I      +L     +   ++   LD   S     +    N  ++ 
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILSQQRTI--NLRQNPLDCTCSNIYFLEWYKENMQKLE 580

Query: 118 NI-HVHCVDCLKLAG 131
           +     C +   L G
Sbjct: 581 DTEDTLCENPPLLRG 595

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 19/127 (14%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLS 68
            L S L GL +L KL +S     E     S  +  SL  L + GN     L    +  L 
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 69  SLRGIKLEECKM---------LQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNE 113
           +LR + L    +         L+NL  L +          +  +       L  +L+L  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-LLDLAF 409

Query: 114 HQIPNIH 120
            ++    
Sbjct: 410 TRLKVKD 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLR 71
            ++LSG  +L  L      +        + +  +LE L+L  N+  ++ L   +    L+
Sbjct: 98  ETALSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKL 129
            +  +    +  L +         +        LS  LNLN + I  I     D    
Sbjct: 157 VLDFQNNA-IHYLSKE-------DMSSLQQATNLS--LNLNGNDIAGIEPGAFDSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 15/118 (12%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA--SIYRLSSL 70
           +  L  L  L  L++SY +        +  +   LE L L+        A      L  L
Sbjct: 369 NLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLK 128
           + + L        L     ++     DG  +L+     LNL  +  P  ++   + L+
Sbjct: 428 KVLNLSHS----LLDISSEQL----FDGLPALQ----HLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLR 71
           + +      L  LD+++  L      S   +L  L+ L+LS +        ++  L +L+
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLK 128
            + L+                  SL     LE    +L L+   + +I  H    LK
Sbjct: 453 HLNLQGNH-FPKGNIQKTN----SLQTLGRLE----ILVLSFCDLSSIDQHAFTSLK 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 24/129 (18%)

Query: 13  SSSLSGLC--SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
            +   GLC  S+  +++           ++      L+EL L+  +   L + +  LS+L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303

Query: 71  R-------GIKLEECKMLQNLPRL----------PARIQGISLDGCVSLETLSDVLNLNE 113
           +         +        N P L             +    L+   +L      L+L+ 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE----LDLSH 359

Query: 114 HQIPNIHVH 122
             I      
Sbjct: 360 DDIETSDCC 368

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 6/131 (4%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
                 L +LT+LD+S   +    +  S G L SL+ +  S N    +      L  L+G
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE--LEPLQG 173

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLS-DVLNLNEHQIPNIHVHCVDCLKLAG 131
             L    +  N   L +R+             +  ++L+++ +              ++ 
Sbjct: 174 KTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-NFSNAISK 230

Query: 132 NYDLALSLLKE 142
           +   +L L   
Sbjct: 231 SQAFSLILAHH 241

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 26/134 (19%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS------ 63
           L +   L  +  L  L ++       +   +  +  SLE+L L  N       +      
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 64  IYRLSSLRGIKLEECK-------MLQNLPRLPARIQGISLDGCVSLETLSD--------V 108
              LS L+ + L           +  +L  L    +G+SL+    L  LS         +
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL----RGLSLNSN-RLTVLSHNDLPANLEI 530

Query: 109 LNLNEHQIPNIHVH 122
           L+++ +Q+   +  
Sbjct: 531 LDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 27/140 (19%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
           SS+  GL  +  +D+    +    I       L  L+ L L  N     L +I+ + S+ 
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAI--IQDQTFKFLEKLQTLDLRDNA----LTTIHFIPSIP 384

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSD-----------VLNLNEHQIPNIH 120
            I L   K L  LP++      I L     LE L             +L LN+++  +  
Sbjct: 385 DIFLSGNK-LVTLPKINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 121 VHCVDC-------LKLAGNY 133
                        L L  N 
Sbjct: 443 GDQTPSENPSLEQLFLGENM 462

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLSSLR 71
           +SS   L  L  L++            +  +L +L  L L  +    L       L  L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVH 122
            ++L  C  L +       ++        +L      L+L+++QI ++++H
Sbjct: 101 ELRLYFCG-LSDAV-----LKDGYFRNLKALTR----LDLSKNQIRSLYLH 141

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 19/144 (13%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLASIYRLS 68
              + S   L SL  LD+S   L      S S     SL+ L LS N  +T+ ++   L 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 69  SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDC-- 126
            L  +  +    L+ +                +L      L+++            +   
Sbjct: 397 QLEHLDFQHSN-LKQMSEFSV------FLSLRNLIY----LDISHTHTRVAFNGIFNGLS 445

Query: 127 ----LKLAGNYDLALSLLKEYIKN 146
               LK+AGN     + L +    
Sbjct: 446 SLEVLKMAGNS-FQENFLPDIFTE 468

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLR 71
           +   +GL SL  L ++     E  +P    +L +L  L LS      L  + +  LSSL+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 72  GIKLEECK-------MLQNLPRLPARIQGISLDG------CVSLETLSDVLNLNEHQIPN 118
            + +   +       +   L  L    Q I L        C  ++ LS  LN N  +   
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSL----QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLR 71
           S S      L  LD+S C++ +     +   L  L  L L+GN   +L    +  LSSL+
Sbjct: 45  SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVH 122
            +   E   L +L           +    +L+     LN+  + I +  + 
Sbjct: 104 KLVAVETN-LASLE-------NFPIGHLKTLKE----LNVAHNLIQSFKLP 142

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR 71
           +  +  L +L +L++++  +    +P    +L +LE L LS N   ++    +  L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 72  GIKLE 76
            + L 
Sbjct: 177 LLNLS 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 12  LSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIY-RLSS 69
           L    + L +LT LD+S C L +  +  +    L SL+ L+++ N   ++   I+ RL+S
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 70  LRGIKLE 76
           L+ I L 
Sbjct: 520 LQKIWLH 526

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
           SSL  L  L  L + +  + +  I + +  L  LE L+L  N  +T +  + RL+ L  +
Sbjct: 103 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTL 158

Query: 74  KLEECKM-----LQNLPRLPARIQGISLDGC--VSLETLSD-----VLNLNEHQIPNIHV 121
            LE+ ++     L  L +L    Q + L       L  L+      VL L   +  N  +
Sbjct: 159 SLEDNQISDIVPLAGLTKL----QNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214

Query: 122 HCVDCLK-LAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITIS 180
           +    L       +   SL+   I + +  +    +     E      +   +  +I  +
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

Query: 181 T 181
            
Sbjct: 275 K 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
                     K ++    + +     +  +L S++++  + ++ +  +  I  L ++  +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKL 70

Query: 74  -----KLEECKMLQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI-- 119
                KL + K L NL  L        +I+ +S L     L++    L+L  + I +I  
Sbjct: 71  FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKS----LSLEHNGISDING 126

Query: 120 --HVHCVDCLKLAGN 132
             H+  ++ L L  N
Sbjct: 127 LVHLPQLESLYLGNN 141

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 12/111 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSS 69
           ++SS+  GL  L  LD  + +L + +  S    L +L  L +S  +       I+  LSS
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 70  LRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH 120
           L  +K+      +N                 +L      L+L++ Q+  + 
Sbjct: 152 LEVLKMAGNSFQENFLPD-------IFTELRNLT----FLDLSQCQLEQLS 191

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 18/127 (14%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-LCSLEELHLSGNNFVTLLASIYRLSSLR 71
                 L  LTKL +S   L      S       SL+ L LS N  +T+ ++   L  L 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVD------ 125
            +  +    L+ +                +L      L+++            +      
Sbjct: 105 HLDFQHSN-LKQMSEFSV------FLSLRNLIY----LDISHTHTRVAFNGIFNGLSSLE 153

Query: 126 CLKLAGN 132
            LK+AGN
Sbjct: 154 VLKMAGN 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 12  LSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSS 69
           L    + L +LT LD+S C L +  +  +    L SL+ L++S NNF +L    Y+ L+S
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 70  LRGIKLEECKMLQNLPR-----LPARIQGISLDG 98
           L+ +       +    +      P+ +  ++L  
Sbjct: 225 LQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 257

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 13/116 (11%)

Query: 17  SGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIY--RLSSLRGI 73
           SGL SL KL     +L    + +   G L +L+EL+++ N   +     Y   L++L  +
Sbjct: 97  SGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 74  KLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKL 129
            L   K +Q++           L     +  L+  L+L+ + +  I       ++L
Sbjct: 155 DLSSNK-IQSIY------CTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-LCSLEELHLSGNNFVTLLASI-YRLSSL 70
           S S      L  LD+S C++    I       L  L  L L+GN   +L       LSSL
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVH 122
           + +   E   L +L   P            +L+     LN+  + I +  + 
Sbjct: 103 QKLVAVETN-LASLENFPI-------GHLKTLKE----LNVAHNLIQSFKLP 142

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSSLRG 72
           + +GL +L  L++    L    IP+     L  L+EL L  N   ++ +  +  + SLR 
Sbjct: 107 AFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH 120
           + L E K L  +          + +G  +L      LNL    +  I 
Sbjct: 165 LDLGELKRLSYISEG-------AFEGLSNLRY----LNLAMCNLREIP 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSSLRG 72
           + +GL SL  L++    L    IPS     L  L EL L  N   ++ +  +  + SL  
Sbjct: 118 AFNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 73  IKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH 120
           + L E K L+ +          + +G  +L+     LNL    I ++ 
Sbjct: 176 LDLGELKKLEYISEG-------AFEGLFNLKY----LNLGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 23/125 (18%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLA--SIYRLSS 69
           S +   L  L +L +    +    IPS     + SL  L L     +  ++  +   L +
Sbjct: 140 SGAFEYLSKLRELWLRNNPIES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 70  LRGIKLEECK-----MLQNLPRLPA------RIQGI---SLDGCVSLETLSDVLNLNEHQ 115
           L+ + L  C       L  L  L            I   S  G  SL+ L     +   Q
Sbjct: 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW----VMNSQ 253

Query: 116 IPNIH 120
           +  I 
Sbjct: 254 VSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR 71
             +  GL +L  L++  C++ +  +P+ +  L  LEEL +SGN+F  +   S + LSSL+
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD--MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 72  GIKLEECKM-------LQNLPRL 87
            + +   ++          L  L
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASL 268

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
           +L+     + +L  LD+S+  L    +  +      LE L+L  N+ VTL   +    +L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTL--KLSTHHTL 341

Query: 71  RGIKLEE------CKM--LQNLPRL 87
           + + L              +N+ R 
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
                 +  L +L IS   L    +      + +L+ L LS N+ + +  +  +   L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322

Query: 73  IKLEECKM-------LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHC 123
           + L+   +          L  L   +     D C SL  L    N+    + +   HC
Sbjct: 323 LYLDHNSIVTLKLSTHHTLKNL--TLSHNDWD-CNSLRAL--FRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 35/147 (23%)

Query: 10  LSLSS------SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL--- 60
           L LSS       LS + SL   ++SY  L      S++    ++EEL  S N+   +   
Sbjct: 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGP 223

Query: 61  -LASIYRLSSLRGIKLEECKMLQNLPRLPA------RIQGI---SLDGCVSLETLSDVLN 110
               +  L  L+   L +   L N P L         ++ I          LE     L 
Sbjct: 224 VNVELTIL-KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER----LY 278

Query: 111 LNEHQIPNIHVHCVDC-----LKLAGN 132
           ++ +++  ++++         L L+ N
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 24/126 (19%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSSL 70
           ++ L     +  L+++   + E  I +       ++++L++  N    L   +++ +  L
Sbjct: 62  AALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 71  RGIKLEECK-------MLQNLPRLP---------ARIQGISLDGCVSLETLSDVLNLNEH 114
             + LE          +  N P+L           RI+  +     SL+     L L+ +
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN----LQLSSN 175

Query: 115 QIPNIH 120
           ++ ++ 
Sbjct: 176 RLTHVD 181

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 20/122 (16%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           +S  + L  L +L +L ++   L +     ++  L +L +L L+ N  ++ LA +  L+ 
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQ-ISNLAPLSGLTK 266

Query: 70  LRGIKLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIP 117
           L  +KL   ++     L  L  L        +++ IS +    +L      L L  + I 
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY----LTLYFNNIS 322

Query: 118 NI 119
           +I
Sbjct: 323 DI 324

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
            + + L    K  +   ++ +     S  DL  +  L       +  +  +  L++L  I
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLG-IKSIDGVEYLNNLTQI 73

Query: 74  KLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI 119
                ++     L+NL +L        +I  I+ L    +L      L L  +QI +I
Sbjct: 74  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDI 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 18/118 (15%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
             +  L +LT+++ S   L +    + + +L  L ++ ++ N     +  +  L++L G+
Sbjct: 62  DGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQI-ADITPLANLTNLTGL 117

Query: 74  KLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI 119
            L   ++     L+NL  L         I  IS L G  SL+ LS         +  +
Sbjct: 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS--FGNQVTDLKPL 173

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           L   S +S L +LT L + + ++ +    S +  L  L+ L    N  V+ ++S+  L++
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNK-VSDVSSLANLTN 354

Query: 70  LRGIKLEECKM-----LQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQIPN 118
           +  +     ++     L NL R+              ++   ++   + V N+    I  
Sbjct: 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

Query: 119 I 119
            
Sbjct: 415 A 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           ++ + S + L  +T L      +        +  L +L +++ S N  +T +  +  L+ 
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTK 91

Query: 70  LRGIKLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIP 117
           L  I +   ++     L NL  L        +I  I  L    +L      L L+ + I 
Sbjct: 92  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNTIS 147

Query: 118 NI 119
           +I
Sbjct: 148 DI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 21/118 (17%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
           S+LSGL SL +L               + +L +LE L +S N  V+ ++ + +L++L  +
Sbjct: 150 SALSGLTSLQQLSFGNQVTD----LKPLANLTTLERLDISSNK-VSDISVLAKLTNLESL 204

Query: 74  KLEECK--MLQNLPRLPA---------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI 119
                +   +  L  L           +++ I  L    +L      L+L  +QI N+
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQISNL 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
           +L+S  +    L  L++S   L    +P     L  L        +   L + + +L  +
Sbjct: 72  NLTSLPALPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKL-WI 128

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVL 109
            G +L        LP LP  +Q +S+     L +L  + 
Sbjct: 129 FGNQLTS------LPVLPPGLQELSVSDN-QLASLPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSL 70
            L+S  +    L KL      L    +P        L+EL +S N   +L      L  L
Sbjct: 152 QLASLPALPSELCKLWAYNNQLTS--LPMLPS---GLQELSVSDNQLASLPTLPSELYKL 206

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVL 109
                   + L +LP LP+ ++ + + G   L +L  + 
Sbjct: 207 W---AYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLP 240

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 21/112 (18%)

Query: 21  SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80
               L++    L    +P  +     +  L +  NN  +L A    L +L    +   + 
Sbjct: 41  GNAVLNVGESGLTT--LPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGNQ- 92

Query: 81  LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGN 132
           L +LP        +   G + L     + +     +P +       L + GN
Sbjct: 93  LTSLP--------VLPPGLLELS----IFSNPLTHLPALPSGLCK-LWIFGN 131

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 19  LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEEC 78
              L KL I    L    +P        L+EL +S N   +L A    L  L        
Sbjct: 120 PSGLCKLWIFGNQLTS--LPVLPP---GLQELSVSDNQLASLPALPSELCKL---WAYNN 171

Query: 79  KMLQNLPRLPARIQGISLDGCVSLETLSDVL 109
           + L +LP LP+ +Q +S+     L +L  + 
Sbjct: 172 Q-LTSLPMLPSGLQELSVSDN-QLASLPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 19  LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEEC 78
              L +L +S   L    +P        L  L +  N    L  S+  LSS   + LE  
Sbjct: 240 PSELKELMVSGNRLTS--LPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294

Query: 79  KMLQNLPRLPAR 90
             L        R
Sbjct: 295 P-LSERTLQALR 305

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 23/148 (15%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASI-YRL 67
           L    + + L +L  L +S+  L    I S     + +L  L LS N+  TL   +   L
Sbjct: 54  LRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 68  SSLRGIKLEECKMLQNLPR-----LPA---------RIQGIS---LDGCVSLETLSDVLN 110
            +L  + L     +  + R     +           +I       +     L  L  +L+
Sbjct: 112 QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM-LLD 169

Query: 111 LNEHQIPNIHVHCVDCLKLAGNYDLALS 138
           L+ +++  + +  +  L       L L 
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 22/130 (16%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 11  SLSSSLSGLC-SLTKLDISYC--DLGEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIY 65
            +  +++ +  ++T+L++S    +L +  + + +    +L  L LS +  +        +
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 66  RLSSLRGIKLEECKM-----LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH 120
           +L+ L+ + L  C       L  L  +P  ++ + + G V   TL  +       +P++ 
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGTLQLLKE----ALPHLQ 299

Query: 121 VHCVDCLKLA 130
           ++C     +A
Sbjct: 300 INCSHFTTIA 309

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-LCSLEELHLSGNNFVTLLASIYRLSSLR 71
              +S L  L  L +S+  +   ++   +      LE L +S N    +  S   ++SLR
Sbjct: 69  MPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLR 124

Query: 72  GIKLE--------ECKMLQNLPRL------PARIQGISLDGCVSLETLSDVLNLNEHQIP 117
            + L          CK   NL +L       A+ + + L     L     +L+L  + I 
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 118 NIHVHCVDCLKL 129
                 +     
Sbjct: 185 GGETESLQIPNT 196

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 14/118 (11%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSL 70
           SS    L SL  L++         + S   +L +L+ L +      + +       L+SL
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLK 128
             ++++   +           Q  SL     +  L+  L+L+  +   +     D L 
Sbjct: 151 NELEIKALSL--------RNYQSQSLKSIRDIHHLT--LHLS--ESAFLLEIFADILS 196

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 24/120 (20%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSSL 70
              L    +L  L +    +    I       L SLE L LS N+  +L +S +  LSSL
Sbjct: 43  HGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100

Query: 71  RGI--------KLEECKMLQNLPRL----------PARIQGISLDGCVSLETLSDVLNLN 112
           + +         L    +  NL  L           + I+ I   G  SL  L   +   
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE--IKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-LCSLEELHLSGNNFVTLL----ASIY 65
            LS+  S L  + ++ +    +    +P S    L SLE L LS N  V       A   
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 66  RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVD 125
              SL+ + L +   L+++ +         L    +L +    L+++ +    +   C  
Sbjct: 359 AWPSLQTLVLSQNH-LRSMQKTGE-----ILLTLKNLTS----LDISRNTFHPMPDSCQW 408

Query: 126 CLKL 129
             K+
Sbjct: 409 PEKM 412

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGE-GAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLS 68
           L  S+      SL  L +S   L         +  L +L  L +S N F  +  S     
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 69  SLRGIKLEECKMLQNLPR-LPARIQGISLDGCVSLETLSD------VLNLNEHQIPNIH 120
            +R + L     ++ +   +P  ++ + +    +L++ S        L ++ +++  + 
Sbjct: 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRNKLKTLP 467

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 27/139 (19%)

Query: 13  SSSLSGLCSLTKLDISYCD----LGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS--IYR 66
           S + S L +++++ +S       L   +      +L  +  + +     +T +    +  
Sbjct: 48  SHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 67  LSSLRGIKLEECKMLQNLPRLPA----------------RIQGISLDGCVSLETLSDVLN 110
           L  L+ + +     L+  P L                   +  I ++    L   +  L 
Sbjct: 104 LPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 111 LNEHQIPNIHVHCVDCLKL 129
           L  +   ++  +  +  KL
Sbjct: 163 LYNNGFTSVQGYAFNGTKL 181

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLASIYR-LS 68
           +++ +     +LT L I++C+L    +P  ++  L  L  L+LS N   T+  S+   L 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 69  SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH 120
            L+ I+L   + L  +          +  G   L     VLN++ +Q+  + 
Sbjct: 273 RLQEIQLVGGQ-LAVVEPY-------AFRGLNYLR----VLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 24/129 (18%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYR-LSSL 70
               +    L +L+++   +    +      +L +L  L L  N    +   ++  LS+L
Sbjct: 49  QDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106

Query: 71  RGIKLEECK-------MLQNLPRLP---------ARIQGISLDGCVSLETLSDVLNLNEH 114
             + + E K       M Q+L  L            I   +  G  SLE L+  L     
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT--LEKC-- 162

Query: 115 QIPNIHVHC 123
            + +I    
Sbjct: 163 NLTSIPTEA 171

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLASI-YRLSSLRG 72
           + SGL SL +L +  C+L    IP+ ++  L  L  L L   N   +      RL  L+ 
Sbjct: 147 AFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 73  IKLEECKMLQNLPRLPARIQGISL 96
           +++     L  +   P  + G++L
Sbjct: 205 LEISHWPYLDTMT--PNCLYGLNL 226

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT---LLASIYRL 67
            +         + KLD+ Y  L      + I    +LE L     N +    L       
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYC 341

Query: 68  SSLRGIKLEECKMLQNLPRLPARIQGISL----DGCVSLETLS 106
             L+ +++E     Q +      +    L     GC  LE ++
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 19/111 (17%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
            S  +GL  +  +++    L    I +     +  L  + ++  N  T+   +    SL 
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLT 195

Query: 72  GIKLEECK-------MLQNLPRL---------PARIQGISLDGCVSLETLS 106
            + L+  K        L+ L  L          + +   SL     L  L 
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
           ++SL GL +L KL +S+  +    + + S+ +   L ELHL+ N  V +   +     ++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266

Query: 72  GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLK 128
            + L     +  +                S   +S  L  N  Q   I      C+ 
Sbjct: 267 VVYLHNNN-ISAIGS-NDFCPPGYNTKKASYSGVS--LFSNPVQYWEIQPSTFRCVY 319

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLR 71
           + +  G+  L+ + I+  ++    IP  +    SL ELHL GN    +  AS+  L++L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 72  GIKLEECK-------MLQNLPRLPARIQGISLDGCVSLETLSD---------VLNLNEHQ 115
            + L            L N P L    + + L+    L  +           V+ L+ + 
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHL----RELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274

Query: 116 IPNIHV 121
           I  I  
Sbjct: 275 ISAIGS 280

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 7   PVALSLSSSLSGLCSLTKLDISYCDLG-EGAIP--SSIGDLCSLEELHLSGNNF 57
                L  +L     L  + +S    G     P    +     LE L+L  N  
Sbjct: 81  EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 25/123 (20%)

Query: 8   VALSLSSSLSGLCSLTKLDISYCDLG-EGA--IPSSIGDLCSLEELHLSGNNF----VTL 60
           +   L   L+    L  LD+        G+  +  ++    +L EL L+           
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 61  LASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSL-ETLSD------VLNLNE 113
           +      S L  I L+  ++  N          I LD   +L   + +       L LN 
Sbjct: 264 VVDA--FSKLENIGLQTLRLQYN---------EIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 114 HQI 116
           ++ 
Sbjct: 313 NRF 315

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
           + S   L +LT LD     + +    + I  L  L +L  + NN  TL   + + ++L  
Sbjct: 35  TISEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTL--DLSQNTNLTY 89

Query: 73  IKLEECKM----LQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQIPNIHV 121
           +  +  K+    +  L +L        ++  + +     L      LN   + +  I V
Sbjct: 90  LACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTY----LNCARNTLTEIDV 144

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 20/118 (16%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
                L +  K+     ++ +     +  DL  +  L   G   VT +  +  L++L G+
Sbjct: 13  FPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGL 68

Query: 74  KLEECKM--LQNLPRLPA---------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI 119
           +L++ ++  L  L  L            ++ +S + G  S++T    L+L   QI ++
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKT----LDLTSTQITDV 122

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
           + L+GL +L  L +    +    I S +  L +L+ L +     V+ L  +  LS L  +
Sbjct: 123 TPLAGLSNLQVLYLDLNQITN--I-SPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTL 178

Query: 74  KLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNI 119
           K ++ K+     L +LP L        +I  +S L    +L      + L    I N 
Sbjct: 179 KADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFI----VTLTNQTITNQ 232

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
           +S +  L  L  L IS+  +    +  S+      LE L LS N  V +  S +   +L+
Sbjct: 38  TSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNKLVKI--SCHPTVNLK 93

Query: 72  GIKLE--------ECKMLQNLPRL------PARIQGISLDGCVSLETLSDVLNLNEHQIP 117
            + L          CK   N+ +L         ++  S+     L     +L L E    
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 118 NIH 120
              
Sbjct: 154 KED 156

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 9   ALSLSSSLSGLCSLTKLDISYCDLG-EGA--IPSSIGDLCSLEELHLSGNNF 57
              L   L+G  S+T L + +  LG EG   + + +     L+EL+++ N  
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 16  LSGLCSLTKLDISYC----DLGEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIYRLSS 69
           + GL  + K+ +  C    D     +        S+ E+ +     VT   + +++   +
Sbjct: 81  MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140

Query: 70  LRGIKLEECKMLQNL 84
           L+ + L +   ++  
Sbjct: 141 LKYLFLSDLPGVKEK 155

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 13/124 (10%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIYRLS 68
            L +       +  +D +   +         G L  +E++ L   +++    L  + +L 
Sbjct: 52  HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 69  ----SLRGIKLEECKM-----LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
               S+  +++  C       +  L      ++ + L     ++    ++   +  +P++
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFR-NLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169

Query: 120 HVHC 123
            +  
Sbjct: 170 ELKL 173

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 18/110 (16%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRG 72
               SGL ++  +++    L          D   L  L +S      +   +    +L  
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNE 197

Query: 73  IKLEECK-------MLQNLPRL---------PARIQGISLDGCVSLETLS 106
           + L+  K        L    +L            I+  SL    +L  L 
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 20/120 (16%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
           SSL  L  L  L + +  + +  I + +  L  LE L+L  N  +T +  + RL+ L  +
Sbjct: 106 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTL 161

Query: 74  KLEECKM-----LQNLPRLPA------RIQGIS-LDGCVSLETLSDVLNLNEHQIPNIHV 121
            LE+ ++     L  L +L         I  +  L G  +L+     L L   +  N  +
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV----LELFSQECLNKPI 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 18/134 (13%)

Query: 13  SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS--IYRLSSL 70
             + SG   L K++IS  D+ E        +L  L E+ +   N +  +       L +L
Sbjct: 47  KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106

Query: 71  RGIKLEECKMLQNLPRLP---------------ARIQGISLDGCVSLETLSDVLNLNEHQ 115
           + + +     +++LP +                  I  I  +  V L   S +L LN++ 
Sbjct: 107 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 116 IPNIHVHCVDCLKL 129
           I  IH    +  +L
Sbjct: 166 IQEIHNSAFNGTQL 179

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 26/133 (19%)

Query: 15  SLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLASI--YRLSSLR 71
           S S L SL  LD+SY  L    + SS    L SL  L+L GN + TL  +     L+ L+
Sbjct: 95  SFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 72  GIKLEECKMLQNLP-----RLPA---------RIQGI---SLDGCVSLETLSDVLNLNEH 114
            +++        +       L            +Q     SL    ++      L L+  
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH----LILHMK 208

Query: 115 QIPNIHVHCVDCL 127
           Q   +    VD  
Sbjct: 209 QHILLLEIFVDVT 221

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIYRLS 68
                 +    +  L +++    +  +   +    SL +L +    F    LLA+  +L 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506

Query: 69  SLRGIKLEECKM--------LQNLPRL 87
           ++R + +  C +         Q +P+L
Sbjct: 507 TMRSLWMSSCSVSFGACKLLGQKMPKL 533

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 19/117 (16%)

Query: 14  SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGI 73
               GL +  K ++    + +     S  +L  ++  +   +N +  LA +   ++L+ +
Sbjct: 13  FPDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKEL 68

Query: 74  KLEECK-----MLQNLPRLPA------RIQGISLDGCVSLETLSDVLNLNEHQIPNI 119
            L   +      L++L +L        R++ ++      L      L L+ +++ + 
Sbjct: 69  HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSR----LFLDNNELRDT 121

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 24/120 (20%)

Query: 20  CSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79
             +  L +++ DL        +  L  +  L LS N    L  ++  L  L  ++  +  
Sbjct: 441 ADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497

Query: 80  MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNI-------HVHCVDCLKLAGN 132
            L+N+           +     L+     L L  +++              +  L L GN
Sbjct: 498 -LENVD---------GVANLPRLQ----ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.32
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.3
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.25
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.22
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.22
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.2
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.1
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.1
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.1
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.1
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.09
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.02
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.02
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.01
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.0
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.99
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.91
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.89
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.69
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	89.7
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.9

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=3.2e-15  Score=159.51  Aligned_cols=177  Identities=20%  Similarity=0.174  Sum_probs=124.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+.+|..+.++++|+.|+|++|++. +.+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|++|+
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            467777777777777777777777777777776 677777777777777888777777 777777788888888888887


Q ss_pred             cccCCCCCCcccc---c-----------------------------------------------------------cccc
Q 017394           80 MLQNLPRLPARIQ---G-----------------------------------------------------------ISLD   97 (372)
Q Consensus        80 ~l~~lP~lp~~l~---~-----------------------------------------------------------L~~~   97 (372)
                      +.+.+|.-.....   .                                                           -.+.
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            7776664211000   0                                                           0123


Q ss_pred             CCcccccccCcCccCCCCCCccccccc-------ccccccccchHHHHHHHHHhhcCCCCCCCceeecCCCCCCcccc--
Q 017394           98 GCVSLETLSDVLNLNEHQIPNIHVHCV-------DCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFE--  168 (372)
Q Consensus        98 ~c~sL~~l~~~~n~l~~~~~~l~~~~~-------nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~--  168 (372)
                      ++++|+.|+++.|.+++.+|.....+.       ..+++.|.+|..+..|+. |+.++++.|.+++.     ||..|.  
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~-L~~LdLs~N~l~g~-----ip~~l~~l  703 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLDGR-----IPQAMSAL  703 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEC-----CCGGGGGC
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC-CCEEECCCCcccCc-----CChHHhCC
Confidence            467888999999999887764221111       123445888988888876 88999999999984     454444  


Q ss_pred             ----cccCCCCeEEEecCCC
Q 017394          169 ----YQNNEGSSITISTPPK  184 (372)
Q Consensus       169 ----~~~~~g~slt~~Lp~~  184 (372)
                          ..+.++|.++|.+|..
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSS
T ss_pred             CCCCEEECcCCcccccCCCc
Confidence                3445789999999974

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.50  E-value=2.2e-14  Score=137.98  Aligned_cols=110  Identities=25%  Similarity=0.343  Sum_probs=89.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+. .+|+.+.++++|++|+|++|.+.  .+|..++.+++|++|+|++|.++.+|..+..+++|++|+|++|+.
T Consensus        86 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE  162 (328)
T ss_dssp             EEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETT
T ss_pred             EEccCCCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCC
Confidence            578999997 88889999999999999999995  599999999999999999999999999999999999999999998


Q ss_pred             ccCCCCCCcccc-cccccCCcccccccCcCccCC
Q 017394           81 LQNLPRLPARIQ-GISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~lp~~l~-~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      ++.+|....... .-.+.++++|++|++..|.++
T Consensus       163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred             ccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence            887775321100 001224666777777666655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=3.2e-14  Score=136.88  Aligned_cols=76  Identities=24%  Similarity=0.344  Sum_probs=40.0

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhc---------CCCC
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYR---------LSSL   70 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~---------L~~L   70 (372)
                      |+|++|.+. .+|..++++++|++|+|++|.+.  .+|..++.+++|++|+|++|++. .+|..+..         +++|
T Consensus       109 L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L  185 (328)
T 4fcg_A          109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL  185 (328)
T ss_dssp             EEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred             EECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence            345555555 55555555555555555555553  35555555555555555554333 45544432         5555


Q ss_pred             cEEEccccc
Q 017394           71 RGIKLEECK   79 (372)
Q Consensus        71 ~~L~L~~n~   79 (372)
                      ++|+|++|+
T Consensus       186 ~~L~L~~n~  194 (328)
T 4fcg_A          186 QSLRLEWTG  194 (328)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEECcCCC
Confidence            555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.48  E-value=1.8e-14  Score=137.57  Aligned_cols=85  Identities=24%  Similarity=0.281  Sum_probs=70.4

Q ss_pred             CcccCCCCCC--cCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~   76 (372)
                      |+|++|.+.+  .+|+.+.++++|++|+|++ |++. +.+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|+
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  133 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence            5788888888  8888888888888888884 7776 778888888888888888888888 888888888888888888


Q ss_pred             ccccccCCCC
Q 017394           77 ECKMLQNLPR   86 (372)
Q Consensus        77 ~n~~l~~lP~   86 (372)
                      +|.+.+.+|.
T Consensus       134 ~N~l~~~~p~  143 (313)
T 1ogq_A          134 YNALSGTLPP  143 (313)
T ss_dssp             SSEEESCCCG
T ss_pred             CCccCCcCCh
Confidence            8887665553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.48  E-value=2.4e-14  Score=136.66  Aligned_cols=85  Identities=25%  Similarity=0.373  Sum_probs=74.8

Q ss_pred             CcccC-CCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394            1 MPWSS-DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~-N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++ |.+.+.+|..|.++++|++|+|++|.+. +.+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            46774 8888899999999999999999999997 789999999999999999999999 88989999999999999999


Q ss_pred             ccccCCCC
Q 017394           79 KMLQNLPR   86 (372)
Q Consensus        79 ~~l~~lP~   86 (372)
                      ++.+.+|.
T Consensus       160 ~l~~~~p~  167 (313)
T 1ogq_A          160 RISGAIPD  167 (313)
T ss_dssp             CCEEECCG
T ss_pred             cccCcCCH
Confidence            87766664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.46  E-value=6.5e-14  Score=149.40  Aligned_cols=162  Identities=22%  Similarity=0.202  Sum_probs=127.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhh--------------
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIY--------------   65 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~--------------   65 (372)
                      |+|++|.+.+.+|..++.+++|+.|+|++|+++ +.+|..++.+++|++|+|++|.++ .+|..+.              
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            579999999999999999999999999999998 889999999999999999999988 7776543              


Q ss_pred             --------------------------------------------------------cCCCCcEEEccccccccCCCCCCc
Q 017394           66 --------------------------------------------------------RLSSLRGIKLEECKMLQNLPRLPA   89 (372)
Q Consensus        66 --------------------------------------------------------~L~~L~~L~L~~n~~l~~lP~lp~   89 (372)
                                                                              .+++|++|+|++|++.+.+|.   
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~---  650 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---  650 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG---
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH---
Confidence                                                                    346788999999998886664   


Q ss_pred             ccccccccCCcccccccCcCccCCCCCCcccccccc-------cccccccchHHHHHHHHHhhcCCCCCCCceeecCCCC
Q 017394           90 RIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVD-------CLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSE  162 (372)
Q Consensus        90 ~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~n-------c~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~  162 (372)
                      .+.     ++++|+.|+++.|.+++.+|.....+.+       .+++.|.+|..+..|.. |+.++++.|.+++.+|...
T Consensus       651 ~l~-----~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          651 EIG-----SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             GGG-----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC-CSEEECCSSEEEEECCSSS
T ss_pred             HHh-----ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEEECcCCcccccCCCch
Confidence            444     7788899999999988877653222221       23445788888877765 8889999999999888765


Q ss_pred             CCcccccccC
Q 017394          163 IPEWFEYQNN  172 (372)
Q Consensus       163 IP~wf~~~~~  172 (372)
                      ....|...+.
T Consensus       725 ~~~~~~~~~~  734 (768)
T 3rgz_A          725 QFETFPPAKF  734 (768)
T ss_dssp             SGGGSCGGGG
T ss_pred             hhccCCHHHh
Confidence            5555544433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=1.1e-13  Score=144.65  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCC------------------------------------------------
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDL------------------------------------------------   32 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l------------------------------------------------   32 (372)
                      |+|++|++.|.+|+++++|++|+.|+|++|.+                                                
T Consensus        86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l  165 (636)
T 4eco_A           86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC  165 (636)
T ss_dssp             EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence            57999999999999999999999999998843                                                


Q ss_pred             ------------------------------CCCCCCcccCCCCCCCEEeccCCCCcc------------------cchhh
Q 017394           33 ------------------------------GEGAIPSSIGDLCSLEELHLSGNNFVT------------------LLASI   64 (372)
Q Consensus        33 ------------------------------~~~~lP~~i~~L~~L~~L~Ls~N~l~~------------------lP~~i   64 (372)
                                                    + + ||..++++++|++|+|++|.|+.                  +|..+
T Consensus       166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          166 INSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE-E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             hhcCccccccccccccchhhhhhccccCCCc-c-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                                          2 3 88889999999999999999997                  99999


Q ss_pred             h--cCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCcc-CCC
Q 017394           65 Y--RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNL-NEH  114 (372)
Q Consensus        65 ~--~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~-l~~  114 (372)
                      +  ++++|++|+|++|.+.+.+|.   .+.     ++++|++|+++.|. +++
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~---~l~-----~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPT---FLK-----ALPEMQLINVACNRGISG  288 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCT---TTT-----TCSSCCEEECTTCTTSCH
T ss_pred             hhcccCCCCEEEecCCcCCccChH---HHh-----cCCCCCEEECcCCCCCcc
Confidence            8  999999999999998887764   333     55566666666665 443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.33  E-value=4.3e-12  Score=115.07  Aligned_cols=107  Identities=22%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|..+++|++|+|++|+|+.+|.. +..+++|++|+|++|+
T Consensus        37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence            578889988887778899999999999999997 55688899999999999999999988865 5789999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQI  116 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~  116 (372)
                      +.+..|   ..+.     ++++|+.|+++.|.++...
T Consensus       116 l~~~~~---~~~~-----~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B          116 INCLRV---DAFQ-----DLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             CCCCCT---TTTT-----TCTTCCEEECCSSCCSCCC
T ss_pred             CCEeCH---HHcC-----CCCCCCEEECCCCcCCEEC
Confidence            654322   2233     7788888998888877643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.32  E-value=1.5e-12  Score=121.90  Aligned_cols=80  Identities=21%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cccc-chhhhcCCCCcEEEccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      +|++|.+....|..+.++++|+.|+|++|.+. +..|..+..+++|++|+|++|. ++.+ |..+..+++|++|+|++|.
T Consensus        38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A           38 FLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence            45555555555555555555555555555554 3334555555555555555554 4444 3445555555555555555


Q ss_pred             ccc
Q 017394           80 MLQ   82 (372)
Q Consensus        80 ~l~   82 (372)
                      +.+
T Consensus       117 l~~  119 (285)
T 1ozn_A          117 LQE  119 (285)
T ss_dssp             CCC
T ss_pred             CCE
Confidence            433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=7.2e-12  Score=114.17  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=84.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|++.  .+|. .+..+++|++|+|++|+|+.+|.. +..+++|++|+|++|
T Consensus        45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEcCCCccCccCHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            578999999988888999999999999999995  3654 468899999999999999988754 688999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ  115 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~  115 (372)
                      ++. .   +|..+.     ++++|+.|+++.|.++..
T Consensus       123 ~l~-~---lp~~~~-----~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A          123 KLT-E---LPRGIE-----RLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             CCC-S---CCTTGG-----GCTTCSEEECCSSCCCCC
T ss_pred             ccc-c---cCcccc-----cCCCCCEEECCCCcCCcc
Confidence            854 3   444443     778899999998887753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=1.6e-12  Score=138.27  Aligned_cols=90  Identities=28%  Similarity=0.297  Sum_probs=49.8

Q ss_pred             CccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394           13 SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQ   92 (372)
Q Consensus        13 P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~   92 (372)
                      |..+..++.|+.|+|++|.+.  .+|..+..+++|++|+|++|+|+.||..|+.|++|++|+|++|++. .|   |..+.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~l---p~~~~  290 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SL---PAELG  290 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SC---CSSGG
T ss_pred             hhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-cc---Chhhc
Confidence            455566666666666666663  3666666666666666666666666666666666666666666633 23   33333


Q ss_pred             cccccCCcccccccCcCccCC
Q 017394           93 GISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        93 ~L~~~~c~sL~~l~~~~n~l~  113 (372)
                           ++++|+.|+++.|.++
T Consensus       291 -----~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          291 -----SCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             -----GGTTCSEEECCSSCCC
T ss_pred             -----CCCCCCEEECCCCCCC
Confidence                 4555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.31  E-value=1.7e-11  Score=109.44  Aligned_cols=105  Identities=22%  Similarity=0.262  Sum_probs=78.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..+..+.++++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence            578888888776666788889999999998886 33334468888999999999988877754 6888899999998887


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|   ...    +.++++|++|+++.|.++.
T Consensus       112 l~~-~~---~~~----~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          112 LQS-LP---DGV----FDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCC-CC---TTT----TTTCTTCCEEECCSSCCSC
T ss_pred             Ccc-cC---HhH----hccCCcCCEEECCCCccce
Confidence            543 22   211    1367788888888887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.30  E-value=3e-12  Score=116.08  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=57.1

Q ss_pred             CcccCCCCCCcCCc-cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSS-SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~-si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|. .|.++++|+.|+|++|.+. +..|..|..+++|++|+|++|.++.+|. .+..+++|++|+|++|
T Consensus        37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             EEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            34556665555432 3555666666666666664 3333356666666666666666664443 3556666666666666


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++.+..|.   .+.     ++++|+.|+++.|.++.
T Consensus       116 ~l~~~~~~---~~~-----~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A          116 RITCVGND---SFI-----GLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             CCCCBCTT---SST-----TCTTCSEEECTTSCCCC
T ss_pred             cCCeECHh---HcC-----CCccCCEEECCCCcCCE
Confidence            54432221   222     45566666666665554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.29  E-value=5.9e-12  Score=129.22  Aligned_cols=105  Identities=26%  Similarity=0.289  Sum_probs=88.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |||++|.|.+..|.+|.++++|++|+|++|+|. +..|..|.+|++|++|+|++|+++.+|. .|.++++|++|+|++|+
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence            689999999888889999999999999999996 3334569999999999999999998885 68999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|..  .+     .++++|++|+++.|.++.
T Consensus       136 l~~-l~~~--~~-----~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          136 LAS-LENF--PI-----GHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             CCC-STTC--CC-----TTCTTCCEEECCSSCCCC
T ss_pred             CCC-CChh--hh-----hcCcccCeeccccCcccc
Confidence            543 3321  13     378889999999888765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=9.4e-13  Score=142.42  Aligned_cols=85  Identities=16%  Similarity=0.265  Sum_probs=71.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEee-cCCCCCCCC-------------------------------------------
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDI-SYCDLGEGA-------------------------------------------   36 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~L-s~n~l~~~~-------------------------------------------   36 (372)
                      |+|++|++.|.+|++|++|++|+.|+| ++|.++ |.                                           
T Consensus       328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~ls-G~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHH-HTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EECccCCCCCcCchHHhccccceEeeeccccccc-ccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            578899999999999999999999999 666432 22                                           


Q ss_pred             ---------------------------------CCcccCCCCCCCEEeccCCCCcc------------------cchhhh
Q 017394           37 ---------------------------------IPSSIGDLCSLEELHLSGNNFVT------------------LLASIY   65 (372)
Q Consensus        37 ---------------------------------lP~~i~~L~~L~~L~Ls~N~l~~------------------lP~~i~   65 (372)
                                                       ||..|++|++|+.|+|++|+|+.                  +|..++
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence                                             78888899999999999999987                  888877


Q ss_pred             --cCCCCcEEEccccccccCCCC
Q 017394           66 --RLSSLRGIKLEECKMLQNLPR   86 (372)
Q Consensus        66 --~L~~L~~L~L~~n~~l~~lP~   86 (372)
                        ++++|++|+|++|.+.+.+|.
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCG
T ss_pred             hccCCCCCEEECcCCCCCccChH
Confidence              999999999999988887663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.27  E-value=7.7e-12  Score=124.19  Aligned_cols=80  Identities=26%  Similarity=0.353  Sum_probs=39.3

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc--cCCCCCCCEEeccCCCCccc-chh-hhcCCCCcEEEccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS--IGDLCSLEELHLSGNNFVTL-LAS-IYRLSSLRGIKLEE   77 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~--i~~L~~L~~L~Ls~N~l~~l-P~~-i~~L~~L~~L~L~~   77 (372)
                      +|++|.+.+..|..|.++++|++|+|++|.+. +.+|..  ++.+++|++|+|++|+++.+ |.. +..+++|++|+|++
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence            44555554444445555555555555555553 333333  45555555555555555533 332 45555555555555


Q ss_pred             ccccc
Q 017394           78 CKMLQ   82 (372)
Q Consensus        78 n~~l~   82 (372)
                      |.+.+
T Consensus       164 n~l~~  168 (455)
T 3v47_A          164 NKVKS  168 (455)
T ss_dssp             CCBSC
T ss_pred             Ccccc
Confidence            55433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.27  E-value=2.8e-11  Score=111.34  Aligned_cols=105  Identities=24%  Similarity=0.297  Sum_probs=77.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+|. .+..+++|++|+|++|+
T Consensus        40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A           40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence            578889988888888889999999999999987 5566668889999999999999997774 56888999999999987


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|.   ..    +.++++|+.|+++.|.++.
T Consensus       119 l~~-~~~---~~----~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A          119 LKS-LPS---GV----FDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             CCC-CCT---TT----TTTCTTCCEEECCSSCCCC
T ss_pred             CCC-cCh---hH----hccCCcccEEECcCCcCCc
Confidence            543 332   11    1144555555555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.27  E-value=1.2e-11  Score=109.73  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             cccCCCCCCcCCc-cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            2 PWSSDPVALSLSS-SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         2 ~Ls~N~i~~~lP~-si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      +|++|.+.+..|. .+..+++|+.|+|++|.+. +..|..+..+++|++|+|++|+|+.+|. .+..+++|++|+|++|+
T Consensus        35 ~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             ECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            3444444433332 2444444444444444443 3334444444444444444444443332 24444444444444444


Q ss_pred             cc
Q 017394           80 ML   81 (372)
Q Consensus        80 ~l   81 (372)
                      +.
T Consensus       114 l~  115 (192)
T 1w8a_A          114 IS  115 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.26  E-value=2.9e-11  Score=112.45  Aligned_cols=105  Identities=25%  Similarity=0.291  Sum_probs=84.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..+..+.++++|+.|+|++|.+. +..+..+..+++|++|+|++|.++.+| ..+..+++|++|++++|.
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  111 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  111 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence            578999998888778999999999999999996 444557899999999999999999666 678999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ ++..  .     +.++++|++|+++.|.+..
T Consensus       112 l~~-~~~~--~-----~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          112 LAS-LENF--P-----IGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             CCC-STTC--C-----CTTCTTCCEEECCSSCCCC
T ss_pred             ccc-cCch--h-----cccCCCCCEEECcCCccce
Confidence            543 2221  1     3377888888888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.26  E-value=2.2e-11  Score=115.01  Aligned_cols=103  Identities=21%  Similarity=0.191  Sum_probs=72.0

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+.  .+|.. +.+++|++|+|++|.++.+|..+..+++|++|+|++|++
T Consensus        36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--EEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--cccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC
Confidence            467777777777777777778888888877774  25543 677778888888887777777777777888888887774


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ +|  |..+     .++++|+.|.++.|.++.
T Consensus       113 ~~-l~--~~~~-----~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G          113 TS-LP--LGAL-----RGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CC-CC--SSTT-----TTCTTCCEEECTTSCCCC
T ss_pred             cc-cC--HHHH-----cCCCCCCEEECCCCCCCc
Confidence            42 22  1122     266777777777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=3.4e-11  Score=105.39  Aligned_cols=102  Identities=15%  Similarity=0.230  Sum_probs=84.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |++++|.+ +.+|..+.  ++|+.|+|++|++. +..|..++.+++|++|+|++|+|+.+|.. +..+++|++|+|++|+
T Consensus        17 l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           17 VNCQNIRL-ASVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EECCSSCC-SSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCC-CccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            47888888 66777664  89999999999997 66688899999999999999999999976 5899999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|.  ..+.     ++++|+.|.+..|.+..
T Consensus        93 l~~-l~~--~~~~-----~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKS-IPR--GAFD-----NLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCC-CCT--TTTT-----TCTTCSEEECCSSCBCT
T ss_pred             cce-eCH--HHhc-----cccCCCEEEeCCCCccc
Confidence            543 332  1133     78899999999987755

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.25  E-value=4e-12  Score=132.88  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=91.0

Q ss_pred             CcccCCCCCCc-----------------CCcccc--CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cc--
Q 017394            1 MPWSSDPVALS-----------------LSSSLS--GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FV--   58 (372)
Q Consensus         1 L~Ls~N~i~~~-----------------lP~si~--~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~--   58 (372)
                      |+|++|.+.+.                 +|+.++  ++++|++|+|++|++. +.+|..++++++|++|+|++|+ ++  
T Consensus       211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~~~  289 (636)
T 4eco_A          211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGISGE  289 (636)
T ss_dssp             EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred             EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCccc
Confidence            68999999996                 999999  9999999999999998 8999999999999999999998 88  


Q ss_pred             ccchhhhcC------CCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           59 TLLASIYRL------SSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        59 ~lP~~i~~L------~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      .+|..++.+      ++|++|+|++|++. .+|.. ..+.     ++++|+.|+++.|.+.+.+|
T Consensus       290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~-~~l~-----~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE-TSLQ-----KMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH-HHHT-----TCTTCCEEECCSCCCEEECC
T ss_pred             cchHHHHhhhccccCCCCCEEECCCCcCC-ccCch-hhhc-----cCCCCCEEeCcCCcCccchh
Confidence            599999887      99999999999865 45430 0333     66777777777777765444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.25  E-value=2.6e-11  Score=110.46  Aligned_cols=105  Identities=22%  Similarity=0.235  Sum_probs=87.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+....+..+.++++|+.|+|++|++. +..+..+..+++|++|+|++|+|+.+|..+..+++|++|+|++|++
T Consensus        69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC
Confidence            589999997776677899999999999999997 4444557899999999999999999999999999999999999985


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ +|.  ..+     ..+++|+.|.+..|.+.+
T Consensus       148 ~~-~~~--~~~-----~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          148 KS-IPH--GAF-----DRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CC-CCT--TTT-----TTCTTCCEEECTTSCBCT
T ss_pred             Cc-cCH--HHH-----hCCCCCCEEEeeCCCccC
Confidence            43 332  223     378899999999887765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=4e-11  Score=111.78  Aligned_cols=103  Identities=20%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+.  +.+..+++|++|+|++|.+. +..|..++.+++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus        68 L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A           68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence            46788887663  46788888888888888886 44444578888888888888888866644 6788888888888887


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+..|.   .+     .++++|+.|+++.|.++.
T Consensus       145 l~~~~~~---~~-----~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A          145 LQSLPKG---VF-----DKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CCCCCTT---TT-----TTCTTCCEEECCSSCCCC
T ss_pred             cCccCHH---Hh-----ccCccCCEEECCCCCcCc
Confidence            5432221   11     245555555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.24  E-value=9.8e-12  Score=105.07  Aligned_cols=104  Identities=17%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CcccCCCCC-CcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc-cchhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVA-LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT-LLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~-~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-lP~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+. +.+|+.+..+++|+.|+|++|.+. + + ..++.+++|++|+|++|.++. +|..+..+++|++|++++|
T Consensus        22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-S-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-C-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred             EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-C-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence            578999998 789998999999999999999996 3 4 779999999999999999996 8988888999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++.+ +| .+..+     .++++|++|+++.|.++.
T Consensus        99 ~i~~-~~-~~~~~-----~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           99 KIKD-LS-TIEPL-----KKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CCCS-HH-HHGGG-----GGCTTCCEEECTTCGGGG
T ss_pred             cCCC-hH-HHHHH-----hhCCCCCEEeCcCCcccc
Confidence            8543 21 11233     388899999999987765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.24  E-value=1.4e-11  Score=109.87  Aligned_cols=105  Identities=21%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..+..+.++++|++|+|++|++. +..+..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|.
T Consensus        57 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            579999998777777899999999999999996 44444579999999999999999988764 7899999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|.  ..+     .++++|+.|++..|.+.+
T Consensus       136 l~~-~~~--~~~-----~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          136 LKS-VPD--GVF-----DRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSC-CCT--TTT-----TTCTTCCEEECCSCCBCC
T ss_pred             cce-eCH--HHh-----ccCCCccEEEecCCCeec
Confidence            653 322  112     367888999988886655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.23  E-value=7.8e-11  Score=110.08  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~~   80 (372)
                      +.+++.+. .+|..+  .++|+.|+|++|.+. +..+..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|..
T Consensus        17 ~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           17 SCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             ECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            44555553 445433  468899999999986 44445688899999999999998866 67888899999999998874


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++.++  |..+.     ++++|++|.+..|.+..
T Consensus        93 l~~~~--~~~~~-----~l~~L~~L~l~~n~l~~  119 (285)
T 1ozn_A           93 LRSVD--PATFH-----GLGRLHTLHLDRCGLQE  119 (285)
T ss_dssp             CCCCC--TTTTT-----TCTTCCEEECTTSCCCC
T ss_pred             ccccC--HHHhc-----CCcCCCEEECCCCcCCE
Confidence            44442  11222     55566666666665544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.23  E-value=2e-11  Score=110.64  Aligned_cols=105  Identities=20%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+ |..+..+++|++|+|++|+
T Consensus        62 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A           62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred             EECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence            589999999988889999999999999999997 55556699999999999999999966 6789999999999999999


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+..|.   .+.     .+++|+.|++..|.+.+
T Consensus       141 l~~~~~~---~~~-----~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          141 ITTVAPG---AFD-----TLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCBCTT---TTT-----TCTTCCEEECCSCCEEC
T ss_pred             CCEECHH---Hhc-----CCCCCCEEEecCcCCcC
Confidence            6653332   333     77899999999887755

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.23  E-value=2.2e-11  Score=121.19  Aligned_cols=112  Identities=18%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+....+..|.++++|+.|+|++|.+. +..|..|.++++|++|+|++|+++.+|. .|..+++|++|+|++|+
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  147 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP  147 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence            578888888888888888888999999988886 4444678888888888888888887775 58888888888888887


Q ss_pred             cccCCCC-C---Cccccccccc--------------CCcccccccCcCccCCC
Q 017394           80 MLQNLPR-L---PARIQGISLD--------------GCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~-l---p~~l~~L~~~--------------~c~sL~~l~~~~n~l~~  114 (372)
                      +.. +|. .   ..+|+.|++.              ++++|+.|+++.|.++.
T Consensus       148 i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          148 IES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             ccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            543 332 1   1234444333              45667777777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=8e-11  Score=102.42  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      +|++|.+.+..+..+.++++|+.|+|++|.+. +..+..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|.
T Consensus        34 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence            44555554444444455555555555555553 22222245555555555555555544432 3455555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.22  E-value=1.4e-11  Score=122.96  Aligned_cols=178  Identities=15%  Similarity=0.157  Sum_probs=116.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|++. +..|..+.++++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence            578999999988899999999999999999997 55567889999999999999999988754 7889999999999998


Q ss_pred             cccCCCC-C---Cccccccccc--------------CCcccccccCcCccCCCCCCccc-------ccccccccccccch
Q 017394           80 MLQNLPR-L---PARIQGISLD--------------GCVSLETLSDVLNLNEHQIPNIH-------VHCVDCLKLAGNYD  134 (372)
Q Consensus        80 ~l~~lP~-l---p~~l~~L~~~--------------~c~sL~~l~~~~n~l~~~~~~l~-------~~~~nc~kL~~~~~  134 (372)
                      +. .+|. .   ..+|+.|++.              ++++|+.|+++.|.++.. +.+.       +++.+ +++.+..+
T Consensus       159 l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~  235 (452)
T 3zyi_A          159 IE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSG-NHFPEIRP  235 (452)
T ss_dssp             CC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTT-SCCSEECG
T ss_pred             cc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcC-CcCcccCc
Confidence            54 3332 1   1244555443              467778888888777652 2110       11222 12223334


Q ss_pred             HHHHHHHHHhhcCCCCCCCceeecCCC--CCCcccccccCCCCeEEEecCCCC
Q 017394          135 LALSLLKEYIKNSECSWRDFCIVVPGS--EIPEWFEYQNNEGSSITISTPPKT  185 (372)
Q Consensus       135 ~~l~~l~~~l~~~~~~~~~~~~~lPg~--~IP~wf~~~~~~g~slt~~Lp~~~  185 (372)
                      ..+..+.+ |+.+.++.|.+....|+.  ..| -+.....++|.++ .+|+..
T Consensus       236 ~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~~~~~~  285 (452)
T 3zyi_A          236 GSFHGLSS-LKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLS-SLPHDL  285 (452)
T ss_dssp             GGGTTCTT-CCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCS-CCCTTS
T ss_pred             ccccCccC-CCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCC-ccChHH
Confidence            44544444 677777788777654432  111 2233333456665 455443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=1.9e-11  Score=105.36  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=88.3

Q ss_pred             CcccCCCCC-CcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc-cchhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVA-LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT-LLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~-~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-lP~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+. +.+|..+..+++|+.|+|++|.+. + + ..+..+++|++|+|++|.++. +|..+..+++|++|+|++|
T Consensus        29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  105 (168)
T 2ell_A           29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-S-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN  105 (168)
T ss_dssp             EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-C-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred             EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-C-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence            578999997 789998999999999999999996 3 4 789999999999999999996 8888888999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ  115 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~  115 (372)
                      ++.+ +|.+ ..+     ..+++|+.|+++.|.+...
T Consensus       106 ~l~~-~~~~-~~l-----~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          106 KLKD-ISTL-EPL-----KKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SCCS-SGGG-GGG-----SSCSCCCEEECCSSGGGTS
T ss_pred             ccCc-chhH-HHH-----hcCCCCCEEEeeCCcCcch
Confidence            8533 3321 233     3789999999999987653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.22  E-value=2.9e-11  Score=125.17  Aligned_cols=84  Identities=11%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|..+++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+|.. ++.+++|++|+|++|.
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence            567888888777778888888888888888886 55555678888888888888888877765 4788888888888887


Q ss_pred             cccCCC
Q 017394           80 MLQNLP   85 (372)
Q Consensus        80 ~l~~lP   85 (372)
                      +.+..|
T Consensus       159 l~~~~~  164 (597)
T 3oja_B          159 LERIED  164 (597)
T ss_dssp             CCBCCT
T ss_pred             CCCCCh
Confidence            665444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.22  E-value=9.2e-12  Score=110.39  Aligned_cols=104  Identities=21%  Similarity=0.220  Sum_probs=83.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc--ccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS--SIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~--~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~   77 (372)
                      |++++|.+ +.+|..+..  +|+.|+|++|++.  .+|.  .++.+++|++|+|++|+++.+ |..|..+++|++|+|++
T Consensus        13 l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           13 VDCTGRGL-KEIPRDIPL--HTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EECTTSCC-SSCCSCCCT--TCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCCc-CcCccCCCC--CCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            57889988 667776654  8999999999996  3554  389999999999999999966 78899999999999999


Q ss_pred             cccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      |++.+..|.   .+     .++++|++|+++.|.++...+
T Consensus        88 N~l~~~~~~---~~-----~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           88 NKIKEISNK---MF-----LGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CCCCEECSS---SS-----TTCTTCCEEECCSSCCCEECT
T ss_pred             CcCCccCHH---Hh-----cCCCCCCEEECCCCcCCeeCH
Confidence            996653332   23     267889999999988876444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=7.5e-11  Score=102.59  Aligned_cols=102  Identities=19%  Similarity=0.250  Sum_probs=83.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |++++|.+.. +|..+.  ++|+.|+|++|++. +..|..+..+++|++|+|++|+|+.+|.. +..+++|++|+|++|+
T Consensus        14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EECTTSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            5788998855 676663  89999999999997 56688899999999999999999988865 5899999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|.  ..+.     ++++|+.|++..|.+..
T Consensus        90 l~~-~~~--~~~~-----~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           90 LKS-IPR--GAFD-----NLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCC-CCT--TTTT-----TCTTCCEEECCSSCBCT
T ss_pred             cCE-eCH--HHhc-----CCCCCCEEEeCCCCCCC
Confidence            553 322  1233     78899999999987765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.21  E-value=3.7e-11  Score=123.71  Aligned_cols=147  Identities=22%  Similarity=0.256  Sum_probs=104.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|+++++|++|+|++|.++.+ |..|+++++|++|+|++|.
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  115 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK  115 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence            578999999888888999999999999999997 55577899999999999999999966 7889999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC-CCCccccccccccccc----------ccchHHHHHHHHH---hh
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH-QIPNIHVHCVDCLKLA----------GNYDLALSLLKEY---IK  145 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~-~~~~l~~~~~nc~kL~----------~~~~~~l~~l~~~---l~  145 (372)
                      +.+ +|.  ..+     .++++|++|+++.|.+.. .+|.   .+.++.+|.          +..+..+..+.+.   +.
T Consensus       116 l~~-~~~--~~~-----~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          116 LAS-LES--FPI-----GQLITLKKLNVAHNFIHSCKLPA---YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL  184 (606)
T ss_dssp             CCC-SSS--SCC-----TTCTTCCEEECCSSCCCCCCCCG---GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred             ccc-ccc--ccc-----CCCCCCCEEeCCCCcccceechH---hHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence            543 221  123     377888888888887764 3333   233333332          2233444444431   22


Q ss_pred             cCCCCCCCceeecC
Q 017394          146 NSECSWRDFCIVVP  159 (372)
Q Consensus       146 ~~~~~~~~~~~~lP  159 (372)
                      .+.++.+.+....+
T Consensus       185 ~L~l~~n~l~~~~~  198 (606)
T 3vq2_A          185 SLDMSLNPIDFIQD  198 (606)
T ss_dssp             EEECTTCCCCEECT
T ss_pred             eeeccCCCcceeCc
Confidence            46666666665433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.20  E-value=3.1e-11  Score=120.55  Aligned_cols=151  Identities=19%  Similarity=0.146  Sum_probs=105.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..+..+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus       104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK  182 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             EECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence            578899998888888999999999999999986 3334458889999999999999997775 67888888888888877


Q ss_pred             cccCCCCC----Cccccccccc-----------CCcccccccCcCccCCCCCCccccccccccccc----------ccch
Q 017394           80 MLQNLPRL----PARIQGISLD-----------GCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA----------GNYD  134 (372)
Q Consensus        80 ~l~~lP~l----p~~l~~L~~~-----------~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~----------~~~~  134 (372)
                      .++.+|.-    ..+|+.|+++           .+++|+.|+++.|.+....+.   .|.++.+|.          +..+
T Consensus       183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~  259 (452)
T 3zyi_A          183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG---SFHGLSSLKKLWVMNSQVSLIER  259 (452)
T ss_dssp             TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG---GGTTCTTCCEEECTTSCCCEECT
T ss_pred             CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcc---cccCccCCCEEEeCCCcCceECH
Confidence            66666541    1345555443           456888888888887664332   233333332          2223


Q ss_pred             HHHHHHHHHhhcCCCCCCCcee
Q 017394          135 LALSLLKEYIKNSECSWRDFCI  156 (372)
Q Consensus       135 ~~l~~l~~~l~~~~~~~~~~~~  156 (372)
                      ..+..+.+ |+.+.++.|.+..
T Consensus       260 ~~~~~l~~-L~~L~L~~N~l~~  280 (452)
T 3zyi_A          260 NAFDGLAS-LVELNLAHNNLSS  280 (452)
T ss_dssp             TTTTTCTT-CCEEECCSSCCSC
T ss_pred             HHhcCCCC-CCEEECCCCcCCc
Confidence            33444443 6777788887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.20  E-value=2.5e-11  Score=120.82  Aligned_cols=113  Identities=23%  Similarity=0.279  Sum_probs=91.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+....|..|.++++|+.|+|++|++. + +|. .+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|
T Consensus        93 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~  170 (440)
T 3zyj_A           93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-T-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL  170 (440)
T ss_dssp             EECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-S-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             EECCCCcCCccChhhccCCccCCEEECCCCcCC-e-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence            579999999988889999999999999999996 3 554 69999999999999999998775 6888999999999988


Q ss_pred             ccccCCCCC----Cccccccccc-----------CCcccccccCcCccCCCC
Q 017394           79 KMLQNLPRL----PARIQGISLD-----------GCVSLETLSDVLNLNEHQ  115 (372)
Q Consensus        79 ~~l~~lP~l----p~~l~~L~~~-----------~c~sL~~l~~~~n~l~~~  115 (372)
                      +.++.++.-    ..+|+.|+++           .+++|+.|+++.|.++..
T Consensus       171 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             TTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence            777666541    2346666554           456888888888877654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.19  E-value=2.7e-11  Score=125.29  Aligned_cols=105  Identities=23%  Similarity=0.249  Sum_probs=90.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+ +|. +++|++|+.|+|++|.|.  .+|..++.|++|+.|+|++|+|+.+| .++.+++|+.|+|++|++
T Consensus       446 L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          446 LHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             EECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             EEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence            5899999987 676 999999999999999995  59999999999999999999999999 899999999999999986


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      .+..  .|..+.     ++++|+.|+++.|.+++..+
T Consensus       521 ~~~~--~p~~l~-----~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          521 QQSA--AIQPLV-----SCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CSSS--TTGGGG-----GCTTCCEEECTTSGGGGSSS
T ss_pred             CCCC--CcHHHh-----cCCCCCEEEecCCcCCCCcc
Confidence            5422  144554     78999999999998877443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.19  E-value=4.4e-11  Score=120.25  Aligned_cols=165  Identities=16%  Similarity=0.074  Sum_probs=99.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hh---------------
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SI---------------   64 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i---------------   64 (372)
                      |+|++|.+.+.   .++.+++|+.|+|++|++. + +|  ++.+++|+.|++++|+++.+|. .+               
T Consensus       196 L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~  268 (457)
T 3bz5_A          196 LNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-E-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE  268 (457)
T ss_dssp             EECCSSCCSCC---CCTTCTTCSEEECCSSCCS-C-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             EECcCCcCCee---ccccCCCCCEEECcCCccc-c-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence            35666776654   2666777777777777775 2 55  6667777777777776665442 11               


Q ss_pred             --------------hcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394           65 --------------YRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus        65 --------------~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~  130 (372)
                                    +.+++|+.|+|++|..++.+|.-...++.|++++|++|+.|+++.|.+++.      .+.+|.+|.
T Consensus       269 L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l------~l~~l~~L~  342 (457)
T 3bz5_A          269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL------DVSHNTKLK  342 (457)
T ss_dssp             CCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC------CCTTCTTCS
T ss_pred             EECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc------ccccCCcCc
Confidence                          234566666666666666666555567777888888889998888888762      345555543


Q ss_pred             -----ccchHHHHHHHHHhhcCCCCCCCceeecCCCCCCcccccccCCCCeEEEecCCCCc
Q 017394          131 -----GNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  186 (372)
Q Consensus       131 -----~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~~~~~g~slt~~Lp~~~~  186 (372)
                           ++.-..+   . .+..+.+..+.+.+. |.   ...+.....+.+.++|.+|+.+.
T Consensus       343 ~L~l~~N~l~~l---~-~L~~L~l~~n~l~g~-~~---~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          343 SLSCVNAHIQDF---S-SVGKIPALNNNFEAE-GQ---TITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             EEECCSSCCCBC---T-TGGGSSGGGTSEEEE-EE---EEECCCBCCBTTBEEEECCTTCB
T ss_pred             EEECCCCCCCCc---c-ccccccccCCcEEec-ce---eeecCccccccCcEEEEcChhHh
Confidence                 0000001   1 133444555566553 10   11122234457899999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.19  E-value=6.4e-11  Score=120.65  Aligned_cols=147  Identities=24%  Similarity=0.328  Sum_probs=107.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|+++++|++|+|++|+++.+| ..|..+++|++|++++|+
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence            689999999988889999999999999999996 445667999999999999999999776 689999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC-CCCccccccccccccc----------ccchHHHHHHHHHh----
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH-QIPNIHVHCVDCLKLA----------GNYDLALSLLKEYI----  144 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~-~~~~l~~~~~nc~kL~----------~~~~~~l~~l~~~l----  144 (372)
                      +. .+|..+       +.+|++|++|+++.|.+.. ..|.   .+.++.+|.          +..+..+..+.+ +    
T Consensus       112 l~-~l~~~~-------~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~  179 (570)
T 2z63_A          112 LA-SLENFP-------IGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLN  179 (570)
T ss_dssp             CC-CSTTCS-------CTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCC
T ss_pred             cc-cCCCcc-------ccccccccEEecCCCccceecChh---hhcccCCCCEEeCcCCccceecHHHccchhc-cchhh
Confidence            43 344322       3488888999988887765 2333   234443332          222344555544 3    


Q ss_pred             hcCCCCCCCceeecCC
Q 017394          145 KNSECSWRDFCIVVPG  160 (372)
Q Consensus       145 ~~~~~~~~~~~~~lPg  160 (372)
                      ..+.++.+.+....|+
T Consensus       180 ~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             CEEECTTCCCCEECTT
T ss_pred             hhcccCCCCceecCHH
Confidence            3456667777665544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=3.8e-11  Score=111.90  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=85.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|++. +..|..++.+++|++|+|++|+++.+|.. +..+++|+.|++++|+
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence            578999999888888899999999999999997 55555689999999999999999987754 6899999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      +.+..+.   .+     .++++|+.|++..|.+....+
T Consensus       169 l~~~~~~---~~-----~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          169 LQSLPEG---VF-----DKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CCCCCTT---TT-----TTCTTCCEEECCSSCCSCCCT
T ss_pred             cCccCHH---Hh-----cCCccCCEEECCCCcCCccCH
Confidence            6542221   12     266777777777777765433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.19  E-value=1.4e-11  Score=117.14  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=61.6

Q ss_pred             CcccCCCC-CCcCCcccc-------CCCCCCEEeecCCCCCCCCCCccc--CCCCCCCEEeccCCCCcccchhhhcC---
Q 017394            1 MPWSSDPV-ALSLSSSLS-------GLCSLTKLDISYCDLGEGAIPSSI--GDLCSLEELHLSGNNFVTLLASIYRL---   67 (372)
Q Consensus         1 L~Ls~N~i-~~~lP~si~-------~L~~L~~L~Ls~n~l~~~~lP~~i--~~L~~L~~L~Ls~N~l~~lP~~i~~L---   67 (372)
                      |+|++|.+ ...+|..+.       ++++|+.|+|++|.+. +.+|..+  +.+++|++|+|++|+++.+|..+..+   
T Consensus        68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~  146 (312)
T 1wwl_A           68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW  146 (312)
T ss_dssp             CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTT
T ss_pred             cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHh
Confidence            45666666 345555554       5667777777777765 5666665  66777777777777777556666655   


Q ss_pred             --CCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccC
Q 017394           68 --SSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        68 --~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l  112 (372)
                        ++|++|+|++|++.+..|   ..+.     ++++|++|+++.|.+
T Consensus       147 ~~~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          147 LKPGLKVLSIAQAHSLNFSC---EQVR-----VFPALSTLDLSDNPE  185 (312)
T ss_dssp             CCTTCCEEEEESCSCCCCCT---TTCC-----CCSSCCEEECCSCTT
T ss_pred             hcCCCcEEEeeCCCCccchH---HHhc-----cCCCCCEEECCCCCc
Confidence              667777777766443221   1222     445555555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=1.6e-11  Score=132.80  Aligned_cols=105  Identities=24%  Similarity=0.294  Sum_probs=83.6

Q ss_pred             CcccCCCCCC-----------------cCCcccc--CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cc--
Q 017394            1 MPWSSDPVAL-----------------SLSSSLS--GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FV--   58 (372)
Q Consensus         1 L~Ls~N~i~~-----------------~lP~si~--~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~--   58 (372)
                      |+|++|.+.+                 .+|+.++  +|++|+.|+|++|++. +.+|..+++|++|+.|+|++|+ ++  
T Consensus       453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~  531 (876)
T 4ecn_A          453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAA  531 (876)
T ss_dssp             EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred             EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcccc
Confidence            5789999998                 4899988  9999999999999988 8999999999999999999998 88  


Q ss_pred             ccchhhhcCC-------CCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394           59 TLLASIYRLS-------SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        59 ~lP~~i~~L~-------~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      .+|..|+.++       +|++|+|++|.+. .+|.. ..+.     ++++|+.|+++.|.+.
T Consensus       532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~-~~l~-----~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS-ASLQ-----KMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH-HHHT-----TCTTCCEEECTTSCCC
T ss_pred             cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh-hhhh-----cCCCCCEEECCCCCcc
Confidence            4998888776       9999999999865 55540 0222     4455555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.18  E-value=9.7e-11  Score=107.74  Aligned_cols=107  Identities=20%  Similarity=0.274  Sum_probs=88.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|++. +..|..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus        64 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A           64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence            589999999988888999999999999999997 44556689999999999999999988865 6889999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQI  116 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~  116 (372)
                      +.+ +|.  ..+.     ++++|++|+++.|.+....
T Consensus       143 l~~-~~~--~~~~-----~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          143 LQS-IPA--GAFD-----KLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCC-CCT--TTTT-----TCTTCCEEECCSSCCSCCC
T ss_pred             CCc-cCH--HHcC-----cCcCCCEEECCCCcCCccC
Confidence            543 332  1233     6778888888888877643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=5.3e-11  Score=118.11  Aligned_cols=132  Identities=15%  Similarity=0.060  Sum_probs=99.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+.+|..+.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  358 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH  358 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence            478888998888988999999999999999997 66677899999999999999999955 5778899999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCCCCcccccccccccccccchHHHHHHHHHhhcCCCCCCCceeecC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVP  159 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lP  159 (372)
                      +.+..|   ..+.     ++++|+.|+++.|.++...+.   .+.++.+               |+.+.++.|.+....|
T Consensus       359 l~~~~~---~~~~-----~l~~L~~L~L~~N~l~~~~~~---~~~~l~~---------------L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          359 IRALGD---QSFL-----GLPNLKELALDTNQLKSVPDG---IFDRLTS---------------LQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEECT---TTTT-----TCTTCCEEECCSSCCSCCCTT---TTTTCTT---------------CCEEECCSSCBCCCTT
T ss_pred             ccccCh---hhcc-----ccccccEEECCCCccccCCHh---HhccCCc---------------ccEEEccCCCcccCCC
Confidence            655333   2333     778889999988887763322   2333333               4456666777766443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.18  E-value=8.6e-11  Score=109.28  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+....+..|.++++|+.|+|++|.+.  .+|.. +..+++|++|+|++|.++.+|. .+..+++|++|+|++|
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence            345555555554445556666666666666653  24433 3556666666666666665553 3455566666666665


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+.+..|.   .+     .++++|++|+++.|.+..
T Consensus       120 ~l~~~~~~---~~-----~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A          120 QLKSLPPR---VF-----DSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CCCCCCTT---TT-----TTCTTCCEEECCSSCCCC
T ss_pred             ccCeeCHH---Hh-----CcCcCCCEEECCCCcCCc
Confidence            53321111   11     255666666666665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.18  E-value=5.6e-11  Score=122.37  Aligned_cols=150  Identities=16%  Similarity=0.169  Sum_probs=108.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|++|+|++|.+. +..|..|+++++|++|+|++|+++.+ |..|+.+++|++|++++|.
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG  116 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence            689999999998999999999999999999997 66788899999999999999999954 7789999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCC-CCccc-------ccccccccccccchHHHHHHHHHhh--cCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ-IPNIH-------VHCVDCLKLAGNYDLALSLLKEYIK--NSEC  149 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~-~~~l~-------~~~~nc~kL~~~~~~~l~~l~~~l~--~~~~  149 (372)
                      +.+ ++  |..     +.++++|++|.++.|.+... .+.+.       +.+.++ ++.+..+..+..+.+ ++  .+.+
T Consensus       117 i~~-l~--~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~-L~~l~L~l  186 (606)
T 3t6q_A          117 ISS-ID--FIP-----LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQ-ATNLSLNL  186 (606)
T ss_dssp             CSC-GG--GSC-----CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTT-CCSEEEEC
T ss_pred             ccc-CC--cch-----hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcc-cceeEEec
Confidence            553 21  112     34788888888888887652 22210       111111 122223444544443 44  4667


Q ss_pred             CCCCceeecCCC
Q 017394          150 SWRDFCIVVPGS  161 (372)
Q Consensus       150 ~~~~~~~~lPg~  161 (372)
                      +.+.+....|+.
T Consensus       187 ~~n~l~~~~~~~  198 (606)
T 3t6q_A          187 NGNDIAGIEPGA  198 (606)
T ss_dssp             TTCCCCEECTTT
T ss_pred             CCCccCccChhH
Confidence            777777655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.18  E-value=1.3e-10  Score=110.97  Aligned_cols=78  Identities=17%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+|..+.  ++|++|++++|++
T Consensus        59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i  135 (332)
T 2ft3_A           59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI  135 (332)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCcc
Confidence            467788887777777888888888888888886 4556778888888888888888777776554  5666666666664


Q ss_pred             c
Q 017394           81 L   81 (372)
Q Consensus        81 l   81 (372)
                      .
T Consensus       136 ~  136 (332)
T 2ft3_A          136 R  136 (332)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.18  E-value=3.5e-11  Score=120.58  Aligned_cols=84  Identities=17%  Similarity=0.244  Sum_probs=73.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|.++++|++|+|++|+++.+|. .+..+++|++|+|++|+
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence            589999999988889999999999999999997 5668889999999999999999998886 47899999999999998


Q ss_pred             cccCCC
Q 017394           80 MLQNLP   85 (372)
Q Consensus        80 ~l~~lP   85 (372)
                      +.+..|
T Consensus       116 i~~~~~  121 (477)
T 2id5_A          116 IVILLD  121 (477)
T ss_dssp             CCEECT
T ss_pred             cccCCh
Confidence            765444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.18  E-value=8.1e-11  Score=114.91  Aligned_cols=82  Identities=11%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus        74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence            467788887777777888888888888888886 44555678888888888888888877765 4778888888888887


Q ss_pred             cccC
Q 017394           80 MLQN   83 (372)
Q Consensus        80 ~l~~   83 (372)
                      +.+.
T Consensus       153 l~~~  156 (390)
T 3o6n_A          153 LERI  156 (390)
T ss_dssp             CCBC
T ss_pred             cCcc
Confidence            5543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.17  E-value=9e-11  Score=104.27  Aligned_cols=100  Identities=23%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~   80 (372)
                      ++++|.+. .+|..+.  +.|+.|+|++|++.  .+|..+..+++|+.|+|++|.++.+| ..|..+++|+.|+|++|++
T Consensus        16 ~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           16 RCSNKGLK-VLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EcCCCCCC-cCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            44555543 3444332  35666666666663  35555666666666666666666444 3455666666666666653


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ....|.   .+     .++++|+.|++..|.++.
T Consensus        91 ~~i~~~---~f-----~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           91 RCIPPR---TF-----DGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             CBCCTT---TT-----TTCTTCCEEECCSSCCCB
T ss_pred             CEeCHH---Hh-----CCCCCCCEEECCCCCCCe
Confidence            321111   11     144555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=1.1e-11  Score=131.72  Aligned_cols=102  Identities=23%  Similarity=0.212  Sum_probs=91.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+. .+|+.+.+|++|+.|+|++|.|+  .+|..|+.|++|++|+|++|+|+.||..|+.|++|++|+|++|.+
T Consensus       229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC
T ss_pred             EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC
Confidence            689999987 78888999999999999999996  599999999999999999999999999999999999999999985


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                       +.   +|..+.     ++++|+.|+++.|.+.+
T Consensus       306 -~~---lp~~~~-----~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          306 -TT---LPWEFG-----NLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             -CC---CCSSTT-----SCTTCCCEECTTSCCCS
T ss_pred             -Cc---cChhhh-----cCCCccEEeCCCCccCC
Confidence             34   444555     88999999999998876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.17  E-value=8.5e-11  Score=106.45  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=87.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+.  .+|.. +..+++|++|+|++|+++.+ |..|..+++|++|+|++|
T Consensus        61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             EECCSSCCCEECTTTTTTCSSCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC--ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            689999999999999999999999999999996  36665 68999999999999999966 568999999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++.+ +|.  ..+     ..+++|+.|++..|.+..
T Consensus       139 ~l~~-~~~--~~~-----~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          139 KLQT-IAK--GTF-----SPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSC-CCT--TTT-----TTCTTCCEEECCSSCEEC
T ss_pred             cCCE-ECH--HHH-----hCCCCCCEEEeCCCCcCC
Confidence            9654 221  123     367889999998887644

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.16  E-value=1.3e-11  Score=116.60  Aligned_cols=105  Identities=26%  Similarity=0.266  Sum_probs=67.4

Q ss_pred             CcccCCCCCCcCC-ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc--cchhhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLS-SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP-~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~--lP~~i~~L~~L~~L~L~~   77 (372)
                      |+|++|.+.+..+ ..+..+++|+.|+|++|.+. +..|..+..+++|+.|+|++|.+..  +|..+..+++|++|+|++
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            4567777665544 45777777777777777775 5566667777777777777777763  677777777777777777


Q ss_pred             cccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      |++.+..|.   .+.     ++++|+.|+++.|.+..
T Consensus       185 n~l~~~~~~---~~~-----~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          185 CQLEQLSPT---AFN-----SLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             SCCCEECTT---TTT-----TCTTCCEEECTTSCCSB
T ss_pred             CCcCCcCHH---Hhc-----CCCCCCEEECCCCccCc
Confidence            765443232   122     44555555555554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.16  E-value=1.7e-11  Score=124.55  Aligned_cols=76  Identities=20%  Similarity=0.152  Sum_probs=38.4

Q ss_pred             cccCCCCCCcCCc---cccCCCCCCEEeecCCCCCCCCCC---cccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEc
Q 017394            2 PWSSDPVALSLSS---SLSGLCSLTKLDISYCDLGEGAIP---SSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKL   75 (372)
Q Consensus         2 ~Ls~N~i~~~lP~---si~~L~~L~~L~Ls~n~l~~~~lP---~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L   75 (372)
                      +|++|.+.+.+|+   .++.+++|+.|+|++|++.  .+|   ..+..+++|++|+|++|+++.+|..+..+++|++|++
T Consensus       340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR--SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC--CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred             EccCCccccccccchhhhhccccCcEEEccCCccc--ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence            4455555544432   2444555555555555553  132   2245555555555555555555555555555555555


Q ss_pred             cccc
Q 017394           76 EECK   79 (372)
Q Consensus        76 ~~n~   79 (372)
                      ++|+
T Consensus       418 s~N~  421 (549)
T 2z81_A          418 SSTG  421 (549)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            5555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.16  E-value=8.6e-11  Score=114.17  Aligned_cols=105  Identities=18%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             CcccCCCCCCcCCcccc-CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..+..+. ++++|+.|+|++|+|. +..|..|..+++|++|+|++|+|+.+|. .|..+++|+.|+|++|
T Consensus        44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence            57888888887777777 8889999999999886 4444568888999999999999887765 5788889999999988


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++....|.   .+     .++++|+.|+++.|.++.
T Consensus       123 ~i~~~~~~---~~-----~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          123 HIVVVDRN---AF-----EDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CCCEECTT---TT-----TTCTTCCEEECCSSCCCS
T ss_pred             cccEECHH---Hh-----CCcccCCEEECCCCcCCe
Confidence            86543222   22     256667777777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.16  E-value=5e-11  Score=128.35  Aligned_cols=107  Identities=18%  Similarity=0.099  Sum_probs=87.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCC-CcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAI-PSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n   78 (372)
                      |||++|.+.+..|..|.++++|++|+|++|.+. +.+ |..|+++++|++|+|++|+++.+ |..|..+++|++|+|++|
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            689999999999999999999999999999776 667 77899999999999999999955 889999999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+.+.+|.- ..+     .++++|++|+++.|.+..
T Consensus       108 ~l~~~~~~~-~~~-----~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A          108 GLSDAVLKD-GYF-----RNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             CCSSCCSTT-CCC-----SSCSSCCEEEEESCCCCC
T ss_pred             CCCcccccC-ccc-----cccCCCCEEECCCCcccc
Confidence            877644431 012     256666666666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.16  E-value=1.1e-10  Score=111.59  Aligned_cols=107  Identities=18%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~~   80 (372)
                      +++++.+. .+|..+.  ++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+ |..+..+++|++|+|++|++
T Consensus        39 ~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  114 (332)
T 2ft3_A           39 QCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL  114 (332)
T ss_dssp             ECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred             ECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence            45555553 4555442  56777777777765 33344677777777777777777744 55677777777777777764


Q ss_pred             ccCCCC-CCcccccccc-------------cCCcccccccCcCccCC
Q 017394           81 LQNLPR-LPARIQGISL-------------DGCVSLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~-lp~~l~~L~~-------------~~c~sL~~l~~~~n~l~  113 (372)
                      . .+|. ++.+++.|++             .++++|+.|++..|.+.
T Consensus       115 ~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          115 V-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             C-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             C-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            3 3432 2334444432             34556666666666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.16  E-value=6.8e-11  Score=111.53  Aligned_cols=104  Identities=24%  Similarity=0.202  Sum_probs=83.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC--cccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP--SSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~   77 (372)
                      |+|++|.+. .+|+.+..+++|+.|+|++|.+..  +|  ..+..+++|++|+|++|.+. ..|..+..+++|+.|+|++
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEES--STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccc--cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            578899886 467779999999999999999963  44  47899999999999999999 5567789999999999999


Q ss_pred             ccccc-CCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394           78 CKMLQ-NLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ  115 (372)
Q Consensus        78 n~~l~-~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~  115 (372)
                      |.+.+ .+|.   .+.     ++++|+.|+++.|.+...
T Consensus       160 n~l~~~~~~~---~~~-----~l~~L~~L~Ls~n~l~~~  190 (306)
T 2z66_A          160 NSFQENFLPD---IFT-----ELRNLTFLDLSQCQLEQL  190 (306)
T ss_dssp             CEEGGGEECS---CCT-----TCTTCCEEECTTSCCCEE
T ss_pred             Cccccccchh---HHh-----hCcCCCEEECCCCCcCCc
Confidence            98654 2333   333     677888888888877653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.15  E-value=9.9e-11  Score=111.71  Aligned_cols=77  Identities=18%  Similarity=0.275  Sum_probs=53.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..+..|.++++|++|+|++|.+. +..|..++.+++|++|+|++|.++.+|..+.  ++|+.|++++|++
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l  133 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI  133 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcc
Confidence            467777777766667777777777777777775 4456777777777777777777777765543  5666666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.14  E-value=8.4e-11  Score=122.83  Aligned_cols=148  Identities=17%  Similarity=0.144  Sum_probs=105.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..++++++|++|+|++|+++.+|. .|..+++|++|+|++|+
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence            578999998888888999999999999999997 6778889999999999999999998886 59999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCCCCccccccccccccc----------ccchHHHHHHH-HHhhcCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA----------GNYDLALSLLK-EYIKNSE  148 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~----------~~~~~~l~~l~-~~l~~~~  148 (372)
                      +.+ +|.  ..+.     ++++|++|+++.|.+....+.   .+.++.+|.          +..+..+..+. ..|+.+.
T Consensus       109 l~~-~~~--~~~~-----~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          109 IQK-IKN--NPFV-----KQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             CCC-CCS--CTTT-----TCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             cCc-cCh--hHcc-----ccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            543 221  2233     677888888887777654332   223333332          22233332221 1266677


Q ss_pred             CCCCCceeecCC
Q 017394          149 CSWRDFCIVVPG  160 (372)
Q Consensus       149 ~~~~~~~~~lPg  160 (372)
                      ++.+.+....|+
T Consensus       178 L~~n~l~~~~~~  189 (680)
T 1ziw_A          178 LSSNQIKEFSPG  189 (680)
T ss_dssp             CTTCCCCCBCTT
T ss_pred             CCCCcccccChh
Confidence            777777655444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=5.6e-11  Score=120.77  Aligned_cols=104  Identities=21%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|++|+|++|.+. +..|..|+.+++|++|+|++|.++.+|. .|+.+++|++|+|++|.
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            578999999888889999999999999999997 5666789999999999999999997775 49999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l  112 (372)
                      +.+ ++ .|..+.     ++++|++|++..|..
T Consensus       110 l~~-~~-~~~~~~-----~l~~L~~L~L~~n~~  135 (549)
T 2z81_A          110 YQT-LG-VTSLFP-----NLTNLQTLRIGNVET  135 (549)
T ss_dssp             CSS-SC-SSCSCT-----TCTTCCEEEEEESSS
T ss_pred             ccc-cc-hhhhhh-----ccCCccEEECCCCcc
Confidence            653 11 122222     566677777766653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.14  E-value=1.4e-10  Score=109.92  Aligned_cols=81  Identities=9%  Similarity=0.034  Sum_probs=68.1

Q ss_pred             CcccCCCCCCcCCccc--cCCCCCCEEeecCCCCCCCCCC----cccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEE
Q 017394            1 MPWSSDPVALSLSSSL--SGLCSLTKLDISYCDLGEGAIP----SSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGI   73 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si--~~L~~L~~L~Ls~n~l~~~~lP----~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L   73 (372)
                      |+|++|.+.+..|..+  ..+++|+.|+|++|.+. +..|    ..+..+++|++|+|++|.+..+| ..+..+++|++|
T Consensus        96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  174 (310)
T 4glp_A           96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL  174 (310)
T ss_dssp             EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred             EEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE
Confidence            5788999999999888  88999999999999997 5555    34567899999999999999655 678899999999


Q ss_pred             Ecccccccc
Q 017394           74 KLEECKMLQ   82 (372)
Q Consensus        74 ~L~~n~~l~   82 (372)
                      +|++|++.+
T Consensus       175 ~Ls~N~l~~  183 (310)
T 4glp_A          175 DLSDNPGLG  183 (310)
T ss_dssp             ECCSCTTCH
T ss_pred             ECCCCCCcc
Confidence            999998643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.14  E-value=5.8e-11  Score=122.97  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=70.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..|+++++|+.|+|++|.+.  .+|.. ++.+++|++|+|++|.++.+| ..|..+++|++|+|++|
T Consensus       104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            689999999988888999999999999999996  36665 689999999999999999655 57999999999999999


Q ss_pred             cccc
Q 017394           79 KMLQ   82 (372)
Q Consensus        79 ~~l~   82 (372)
                      .+.+
T Consensus       182 ~l~~  185 (597)
T 3oja_B          182 RLTH  185 (597)
T ss_dssp             CCSB
T ss_pred             CCCC
Confidence            8654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.13  E-value=4.2e-11  Score=113.86  Aligned_cols=108  Identities=12%  Similarity=0.058  Sum_probs=89.1

Q ss_pred             CcccCCCCCCcCCccc--cCCCCCCEEeecCCCCCCCCCCcccCCC-----CCCCEEeccCCCCcccc-hhhhcCCCCcE
Q 017394            1 MPWSSDPVALSLSSSL--SGLCSLTKLDISYCDLGEGAIPSSIGDL-----CSLEELHLSGNNFVTLL-ASIYRLSSLRG   72 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si--~~L~~L~~L~Ls~n~l~~~~lP~~i~~L-----~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~   72 (372)
                      |+|++|.+.+.+|..+  ..+++|+.|+|++|.+. + +|..++.+     ++|++|+|++|+++.+| ..|+.+++|++
T Consensus       100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-T-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-S-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred             EEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-c-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence            5799999999999987  89999999999999997 4 48888877     99999999999999776 78999999999


Q ss_pred             EEccccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           73 IKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        73 L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      |+|++|++.+.++. |..   +.+.++++|+.|+++.|.++.
T Consensus       178 L~Ls~N~l~~~~~~-~~~---~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          178 LDLSDNPELGERGL-ISA---LCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             EECCSCTTCHHHHH-HHH---SCTTSCTTCCEEECTTSCCCC
T ss_pred             EECCCCCcCcchHH-HHH---HHhccCCCCCEEECCCCcCcc
Confidence            99999997653221 111   122478899999999887763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.12  E-value=5.4e-11  Score=108.41  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCC-CCCCCCCc-ccCCCCCCCEEeccC-CCCcccc-hhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCD-LGEGAIPS-SIGDLCSLEELHLSG-NNFVTLL-ASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~-l~~~~lP~-~i~~L~~L~~L~Ls~-N~l~~lP-~~i~~L~~L~~L~L~   76 (372)
                      |+|++|.+.+..+..+.++++|+.|+|++|. +.  .+|. .+..+++|++|+|++ |+++.+| ..+..+++|++|+++
T Consensus        36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred             EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            5789999988888789999999999999997 74  4655 789999999999998 9999887 468899999999999


Q ss_pred             ccccccCCCC
Q 017394           77 ECKMLQNLPR   86 (372)
Q Consensus        77 ~n~~l~~lP~   86 (372)
                      +|++.+ +|.
T Consensus       114 ~n~l~~-lp~  122 (239)
T 2xwt_C          114 NTGLKM-FPD  122 (239)
T ss_dssp             EECCCS-CCC
T ss_pred             CCCCcc-ccc
Confidence            998544 664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=5.1e-11  Score=120.72  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=47.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|.+. +..|  ++.+++|++|+|++|.++.+|..    ++|++|++++|.+
T Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l  111 (487)
T 3oja_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNI  111 (487)
T ss_dssp             EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE-EEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCC
T ss_pred             EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC-CCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcC
Confidence            456677776666666677777777777777665 3333  66667777777777766655532    5666666666654


Q ss_pred             cc
Q 017394           81 LQ   82 (372)
Q Consensus        81 l~   82 (372)
                      .+
T Consensus       112 ~~  113 (487)
T 3oja_A          112 SR  113 (487)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.12  E-value=1.9e-11  Score=125.94  Aligned_cols=170  Identities=18%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+ +|..+.++++|+.|+|++|.+. +..| ..+..+++|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus       381 L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE-STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             eECCCCcccc-chhhccCCCCCCeeECCCCccC-CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            4567777654 4566777777777777777775 4444 46777777777777777777 45666777777777777777


Q ss_pred             ccccC-CCCCCcccccccccCCcccccccCcCccCCCCCCccc--------ccccccccccccchHHHHHHHHHhhcCCC
Q 017394           79 KMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH--------VHCVDCLKLAGNYDLALSLLKEYIKNSEC  149 (372)
Q Consensus        79 ~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~--------~~~~nc~kL~~~~~~~l~~l~~~l~~~~~  149 (372)
                      ++.+. +|.   .+.     ++++|+.|+++.|.+....+...        +++.+| ++.+..|..+..+.. |+.+++
T Consensus       459 ~l~~~~~~~---~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~-L~~L~l  528 (606)
T 3vq2_A          459 SFKDNTLSN---VFA-----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYS-LSTLDC  528 (606)
T ss_dssp             EEGGGEECS---CCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTT-CCEEEC
T ss_pred             cCCCcchHH---hhc-----cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCc-CCEEEC
Confidence            75542 332   222     44455555555554443222110        111111 222233444443333 667777


Q ss_pred             CCCCceeecCCC--CCCcccccccCCCCeEEEecCC
Q 017394          150 SWRDFCIVVPGS--EIPEWFEYQNNEGSSITISTPP  183 (372)
Q Consensus       150 ~~~~~~~~lPg~--~IP~wf~~~~~~g~slt~~Lp~  183 (372)
                      +.|.+.. +|..  ..|..+.....++|.++..-+-
T Consensus       529 ~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          529 SFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            7777763 3332  2233333334456666655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.11  E-value=5.4e-11  Score=102.52  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=86.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+.  ..+..+++|+.|+|++|.+. +.+|..+..+++|++|+|++|+++.+|  ..+..+++|++|++++|
T Consensus        54 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           54 LSLINVGLISV--SNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             EEEESSCCCCC--SSCCCCSSCCEEEEESCCCC-SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             EeCcCCCCCCh--hhhccCCCCCEEECcCCcCc-hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            57899998876  77999999999999999997 668888888999999999999999887  78999999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+.+ +|...    .-.+..+++|+.|++..|....
T Consensus       131 ~l~~-~~~~~----~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          131 EVTN-LNDYR----ESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             GGGT-STTHH----HHHHTTCSSCCEETTEETTSCB
T ss_pred             cCcc-hHHHH----HHHHHhCccCcEecCCCCChhh
Confidence            8653 33210    0122378888888887775543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.11  E-value=2e-10  Score=106.84  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..+..+.++++|+.|+|++|.+. +..|..+..+++|++|++++|++..++. .+..+++|++|++++|.
T Consensus        57 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A           57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence            456666666665556666666666666666664 3334556666666666666666665543 45666666666666665


Q ss_pred             c
Q 017394           80 M   80 (372)
Q Consensus        80 ~   80 (372)
                      +
T Consensus       136 l  136 (276)
T 2z62_A          136 I  136 (276)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=112.60  Aligned_cols=102  Identities=24%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..+..+.++++|+.|+|++|.+. +..|..++.+++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence            467777777666667778888888888888775 44456677788888888888888877765 7778888888888876


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCc
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLN  110 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n  110 (372)
                      +. .+|.. ..+     .++++|++|+++.|
T Consensus       136 l~-~l~~~-~~~-----~~l~~L~~L~l~~n  159 (353)
T 2z80_A          136 YK-TLGET-SLF-----SHLTKLQILRVGNM  159 (353)
T ss_dssp             CS-SSCSS-CSC-----TTCTTCCEEEEEES
T ss_pred             Cc-ccCch-hhh-----ccCCCCcEEECCCC
Confidence            43 23320 012     25666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.11  E-value=4.7e-10  Score=104.27  Aligned_cols=80  Identities=18%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+....+..+.++++|++|+|++|.+. +..+..+..+++|++|+|++|.++.+|. .+..+++|++|+|++|.
T Consensus        66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A           66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence            578888887666566688899999999999986 3333457888899999999999887664 57888899999999887


Q ss_pred             cc
Q 017394           80 ML   81 (372)
Q Consensus        80 ~l   81 (372)
                      +.
T Consensus       145 l~  146 (270)
T 2o6q_A          145 LQ  146 (270)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=7.7e-11  Score=104.54  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=85.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.  .++.+..+++|+.|+|++|.+. +..|..++.+++|++|+|++|.++ ..|..+..+++|++|+|++|+
T Consensus        71 L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           71 LTINNIHAT--NYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             EEEESCCCS--CCGGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EEccCCCCC--cchhhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            578888653  3457999999999999999997 667889999999999999999999 578899999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .++.+|    .+.     ++++|+.|+++.|.+..
T Consensus       148 ~i~~~~----~l~-----~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          148 AITDIM----PLK-----TLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             BCCCCG----GGG-----GCSSCCEEECTTBCCCC
T ss_pred             CccccH----hhc-----CCCCCCEEECCCCCCcC
Confidence            555443    233     78888999988887765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.10  E-value=1.7e-10  Score=119.39  Aligned_cols=101  Identities=29%  Similarity=0.309  Sum_probs=68.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+ +|+.+  +++|+.|+|++|+|.  .+|   ..+++|+.|+|++|+|+.+|. +..  +|++|+|++|++
T Consensus        64 L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           64 LQLNRLNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             EECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred             EEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence            5788888876 77665  378888888888885  477   457888888888888888887 554  888888888875


Q ss_pred             ccCCCCCCcccccccccCC---------cccccccCcCccCC
Q 017394           81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~  113 (372)
                      .+ +|..+.+|+.|+++++         ++|+.|+++.|.++
T Consensus       133 ~~-lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          133 TM-LPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             SC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CC-CCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCC
Confidence            54 6654444554444433         34445555544443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.10  E-value=5.5e-11  Score=120.31  Aligned_cols=76  Identities=24%  Similarity=0.189  Sum_probs=46.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      ||+++|++. .+|..+.  ++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+ |..|..+++|++|+|++|+
T Consensus         5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             EecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            456666665 4555444  56666666666664 33335566666666666666666644 4566666666666666665


Q ss_pred             c
Q 017394           80 M   80 (372)
Q Consensus        80 ~   80 (372)
                      +
T Consensus        81 l   81 (520)
T 2z7x_B           81 L   81 (520)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.10  E-value=1.8e-10  Score=100.19  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|+|. +..|..+..+++|++|+|++|+|+.+|. .+..+++|++|+|++|+
T Consensus        35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            689999999999999999999999999999997 4444457899999999999999998886 58999999999999998


Q ss_pred             ccc
Q 017394           80 MLQ   82 (372)
Q Consensus        80 ~l~   82 (372)
                      +..
T Consensus       114 ~~c  116 (170)
T 3g39_A          114 WDC  116 (170)
T ss_dssp             BCT
T ss_pred             CCC
Confidence            654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.10  E-value=8.4e-11  Score=111.54  Aligned_cols=111  Identities=16%  Similarity=0.077  Sum_probs=81.3

Q ss_pred             CcccCCCCCCcCC----ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc---cch--hhhcCCCCc
Q 017394            1 MPWSSDPVALSLS----SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT---LLA--SIYRLSSLR   71 (372)
Q Consensus         1 L~Ls~N~i~~~lP----~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~---lP~--~i~~L~~L~   71 (372)
                      |+|++|.+.+..|    ..+..+++|+.|+|++|.+. +..|..++.+++|++|+|++|++..   +|.  .+..+++|+
T Consensus       122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~  200 (310)
T 4glp_A          122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ  200 (310)
T ss_dssp             CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC
T ss_pred             EEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC
Confidence            6788999887665    34567889999999999996 5666788899999999999998763   443  347888999


Q ss_pred             EEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           72 GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        72 ~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      +|+|++|++ ..+|..+..+    +.++++|++|+++.|.+....|
T Consensus       201 ~L~Ls~N~l-~~l~~~~~~l----~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          201 NLALRNTGM-ETPTGVCAAL----AAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             SCBCCSSCC-CCHHHHHHHH----HHHTCCCSSEECTTSCCCCCCC
T ss_pred             EEECCCCCC-CchHHHHHHH----HhcCCCCCEEECCCCCCCccch
Confidence            999999874 2233322211    2367788888888888776543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.10  E-value=1.9e-10  Score=100.61  Aligned_cols=79  Identities=20%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|+|. + +|.. +..+++|++|+|++|+|+.+|.. +..+++|++|+|++|
T Consensus        38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             EEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-c-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            689999999999999999999999999999996 3 6665 68999999999999999999875 899999999999999


Q ss_pred             ccc
Q 017394           79 KML   81 (372)
Q Consensus        79 ~~l   81 (372)
                      .+.
T Consensus       116 ~~~  118 (174)
T 2r9u_A          116 PWD  118 (174)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=118.15  Aligned_cols=81  Identities=20%  Similarity=0.207  Sum_probs=47.9

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc---cchhhhcCCCCcEEEcccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT---LLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~---lP~~i~~L~~L~~L~L~~n   78 (372)
                      ++++|.+....  .+..+++|+.|+|++|.+. +.+|..++.+++|++|+|++|+++.   +|..+..+++|++|+|++|
T Consensus       308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             EcCCCcccccc--chhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            45556554332  1145666666666666665 5566666666666666666666663   3445666666666666666


Q ss_pred             ccccCCC
Q 017394           79 KMLQNLP   85 (372)
Q Consensus        79 ~~l~~lP   85 (372)
                      ++.+.+|
T Consensus       385 ~l~~~l~  391 (520)
T 2z7x_B          385 SVSYDEK  391 (520)
T ss_dssp             CCBCCGG
T ss_pred             cCCcccc
Confidence            6554344

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.09  E-value=2.4e-10  Score=101.28  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=80.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+. .+| .+..+++|+.|+|++|.+.   .+..+..+++|++|+|++|+++ ..|..+..+++|++|+|++|.
T Consensus        49 L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           49 ITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA  123 (197)
T ss_dssp             EEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred             EeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence            578899987 666 6999999999999999775   4558999999999999999999 578899999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCcc
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNL  111 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~  111 (372)
                      +.+..|   ..+.     .+++|+.|+++.|.
T Consensus       124 i~~~~~---~~l~-----~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          124 HDDSIL---TKIN-----TLPKVNSIDLSYNG  147 (197)
T ss_dssp             CBGGGH---HHHT-----TCSSCCEEECCSCT
T ss_pred             cCcHhH---HHHh-----hCCCCCEEEccCCC
Confidence            765332   2232     67777777777776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.09  E-value=7.1e-11  Score=113.91  Aligned_cols=108  Identities=28%  Similarity=0.308  Sum_probs=89.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccch--hhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~   77 (372)
                      |+|++|.+.+..|..+.++++|++|+|++|.+.  .+|.. ++.+++|++|+|++|+++.+|.  .+..+++|++|++++
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A           81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             EECCCCccCccCHhhcCCCCCCCEEECCCCcCC--cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence            579999999988889999999999999999996  37766 8999999999999999999997  789999999999999


Q ss_pred             cccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      |..++.++.  ..+     .++++|+.|+++.|.+....+
T Consensus       159 n~~~~~~~~--~~~-----~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          159 MDTFTKIQR--KDF-----AGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             SSSCCEECT--TTT-----TTCCEEEEEEEEETTCCEECT
T ss_pred             CccccccCH--HHc-----cCCCCCCEEECCCCCcCccCH
Confidence            964544331  223     377888888888887765433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.09  E-value=1.3e-10  Score=119.18  Aligned_cols=103  Identities=18%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|..|.++++|++|+|++|++. +..|..|+.+++|++|+|++|+++.+|..  .+++|++|+|++|++
T Consensus        57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF  133 (562)
T ss_dssp             EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred             EECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence            345555555555555555555555555555554 33344555555555555555555555544  555555555555553


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      .+ +| .|..+.     ++++|++|+++.|.+.
T Consensus       134 ~~-l~-~p~~~~-----~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          134 DV-LP-VCKEFG-----NLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SB-CC-CCGGGG-----GCTTCCEEEEECSBCC
T ss_pred             cc-cC-chHhhc-----ccCcccEEecCCCccc
Confidence            22 11 112222     4555555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.08  E-value=1.6e-10  Score=118.44  Aligned_cols=105  Identities=18%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.|.+..|..|.+|++|++|+|++|+|.  .+|. .|.+|++|++|+|++|+++.+|. .|+++++|++|+|++|
T Consensus        81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A           81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             EECCCCcCCCcChhHhcCCCCCCEEEccCCcCC--CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence            689999999988889999999999999999996  3664 68999999999999999998885 5899999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+.. ++ +|..+.     ++++|++|.++.|.++.
T Consensus       159 ~l~~-~~-~~~~~~-----~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          159 LIQS-FK-LPEYFS-----NLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCCC-CC-CCGGGG-----GCTTCCEEECCSSCCCE
T ss_pred             cccc-CC-Cchhhc-----cchhhhhhcccCccccc
Confidence            8543 11 233333     77889999999887765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.08  E-value=1.7e-10  Score=112.70  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=70.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+.  .+|.. ++.+++|++|+|++|+++.++ ..+..+++|+.|++++|
T Consensus        98 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A           98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             EECCCCCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            579999999988888999999999999999995  47776 589999999999999999665 56899999999999999


Q ss_pred             cccc
Q 017394           79 KMLQ   82 (372)
Q Consensus        79 ~~l~   82 (372)
                      ++.+
T Consensus       176 ~l~~  179 (390)
T 3o6n_A          176 RLTH  179 (390)
T ss_dssp             CCSB
T ss_pred             cCCc
Confidence            8543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.08  E-value=1.1e-10  Score=120.23  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             CcccCCCCCCcC--CccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-c-hhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVALSL--SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-L-ASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~~l--P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P-~~i~~L~~L~~L~L~   76 (372)
                      |+|++|.+.+..  |..+.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.. | ..+..+++|+.|+++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            456667666554  556667777777777777765 45566666677777777777766632 2 236666677777777


Q ss_pred             ccccccC
Q 017394           77 ECKMLQN   83 (372)
Q Consensus        77 ~n~~l~~   83 (372)
                      +|.+.+.
T Consensus       434 ~n~l~~~  440 (606)
T 3t6q_A          434 HSLLDIS  440 (606)
T ss_dssp             TCCCBTT
T ss_pred             CCccCCc
Confidence            6665443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=5.2e-11  Score=100.56  Aligned_cols=100  Identities=21%  Similarity=0.275  Sum_probs=80.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+.  +.+.++++|+.|+|++|.+. +.+|..++.+++|++|+|++|.++.+|  ..+..+++|++|++++|
T Consensus        47 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           47 LSTINVGLTSI--ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             EECTTSCCCCC--TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             EECcCCCCCCc--hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            57899999877  77999999999999999997 668888888999999999999999876  88999999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCc
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDV  108 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~  108 (372)
                      .+.+ +|..+..    .+..+++|+.|++.
T Consensus       124 ~l~~-~~~~~~~----~~~~l~~L~~L~l~  148 (149)
T 2je0_A          124 EVTN-LNDYREN----VFKLLPQLTYLDGY  148 (149)
T ss_dssp             GGGG-STTHHHH----HHHHCTTCCEETTB
T ss_pred             cccc-hHHHHHH----HHHHCCCcccccCC
Confidence            8554 3321101    12266777777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.07  E-value=4.2e-10  Score=107.30  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+.  .+|..+.  ++|+.|++++|.++.+|. .+..+++|+.|++++|.
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A           81 LILINNKISKISPGAFAPLVKLERLYLSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence            579999999999999999999999999999995  5887765  788889998888886664 57888888888888887


Q ss_pred             ccc--CCCCC---CcccccccccCC----------cccccccCcCccCCCCCCccccccccccccc----------ccch
Q 017394           80 MLQ--NLPRL---PARIQGISLDGC----------VSLETLSDVLNLNEHQIPNIHVHCVDCLKLA----------GNYD  134 (372)
Q Consensus        80 ~l~--~lP~l---p~~l~~L~~~~c----------~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~----------~~~~  134 (372)
                      +..  ..+..   ...++.|++.++          ++|+.|+++.|.+....+.   .+.++.+|.          +..+
T Consensus       157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG---GGTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCceeCh
Confidence            532  22221   123444444433          4667777777766543222   222222222          2222


Q ss_pred             HHHHHHHHHhhcCCCCCCCceeecCCCCCCcccc
Q 017394          135 LALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFE  168 (372)
Q Consensus       135 ~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~  168 (372)
                      ..+..+.+ |+.+.++.|.+.      .+|.++.
T Consensus       234 ~~~~~l~~-L~~L~L~~N~l~------~lp~~l~  260 (330)
T 1xku_A          234 GSLANTPH-LRELHLNNNKLV------KVPGGLA  260 (330)
T ss_dssp             TTGGGSTT-CCEEECCSSCCS------SCCTTTT
T ss_pred             hhccCCCC-CCEEECCCCcCc------cCChhhc
Confidence            23433433 667777777765      4555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.06  E-value=2.4e-10  Score=111.04  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=87.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.|.+..|..|.++++|+.|+|++|+|. +..+..|..+++|+.|+|++|+++.+ |..|..+++|+.|+|++|+
T Consensus        69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence            689999999988889999999999999999996 44445689999999999999999966 5789999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.. +|   ..+- -.+.++++|+.|+++.|.+..
T Consensus       148 l~~-l~---~~~~-~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          148 ISR-FP---VELI-KDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCS-CC---GGGT-C----CTTCCEEECCSSCCCC
T ss_pred             CCe-eC---HHHh-cCcccCCcCCEEECCCCCCCc
Confidence            543 33   2220 011367889999999988765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.05  E-value=3.1e-10  Score=117.35  Aligned_cols=100  Identities=27%  Similarity=0.334  Sum_probs=81.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+. .+|   ..+++|+.|+|++|+|+ + +|. +..  +|+.|+|++|+|+.+|.   .+++|+.|+|++|++
T Consensus        85 L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A           85 LEITQNALI-SLP---ELPASLEYLDACDNRLS-T-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQL  152 (571)
T ss_dssp             EECCSSCCS-CCC---CCCTTCCEEECCSSCCS-C-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred             EECcCCCCc-ccc---cccCCCCEEEccCCCCC-C-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCcc
Confidence            578999987 677   45789999999999996 3 888 665  89999999999999887   688999999999986


Q ss_pred             ccCCCCCCcccccccccCCc---------ccccccCcCccCC
Q 017394           81 LQNLPRLPARIQGISLDGCV---------SLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~---------sL~~l~~~~n~l~  113 (372)
                      .+ +|..+.+|+.|+++++.         +|+.|+++.|.++
T Consensus       153 ~~-lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          153 TM-LPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE  193 (571)
T ss_dssp             SC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             Cc-CCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC
Confidence            54 78777788888887763         6777777777766

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.04  E-value=6.9e-10  Score=104.73  Aligned_cols=104  Identities=28%  Similarity=0.308  Sum_probs=84.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+. .+|..+.++++|+.|+|++|++. +..|..|..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            578999986 77888999999999999999996 44446799999999999999999988864 6789999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +. .+|.   ..    +.++++|+.|+++.|.++.
T Consensus       160 l~-~l~~---~~----~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          160 LT-ELPA---GL----LNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             CS-CCCT---TT----TTTCTTCCEEECCSSCCCC
T ss_pred             CC-ccCH---HH----hcCcCCCCEEECCCCcCCc
Confidence            54 3332   21    1267788888888887764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.04  E-value=1.2e-10  Score=119.27  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc---hhhhcCCCCcEEEcccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL---ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP---~~i~~L~~L~~L~L~~n   78 (372)
                      ++++|.+.....  ...+++|+.|+|++|.+. +.+|..++.+++|++|+|++|+++.+|   ..+..+++|++|+|++|
T Consensus       337 ~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          337 SISDTPFIHMVC--PPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             EEESSCCCCCCC--CSSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             EccCCCcccccC--ccCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence            455665533221  146667777777777776 566666777777777777777766443   45666777777777777


Q ss_pred             ccccCCC
Q 017394           79 KMLQNLP   85 (372)
Q Consensus        79 ~~l~~lP   85 (372)
                      ++.+.+|
T Consensus       414 ~l~~~~~  420 (562)
T 3a79_B          414 SLNSHAY  420 (562)
T ss_dssp             CCBSCCS
T ss_pred             cCCCccC
Confidence            6554344

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=3.3e-10  Score=117.13  Aligned_cols=81  Identities=21%  Similarity=0.263  Sum_probs=74.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc--chhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL--LASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l--P~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+. .+|..+++|++|+.|+|++|.++ + +| .++.|++|+.|+|++|+|+.+  |..|+.+++|+.|+|++|
T Consensus       468 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             eecCccccc-ccchhhhcCCCCCEEECCCCCCC-C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            689999998 88999999999999999999997 3 88 899999999999999999977  899999999999999999


Q ss_pred             ccccCCC
Q 017394           79 KMLQNLP   85 (372)
Q Consensus        79 ~~l~~lP   85 (372)
                      ++.+..|
T Consensus       544 ~l~~~~~  550 (567)
T 1dce_A          544 SLCQEEG  550 (567)
T ss_dssp             GGGGSSS
T ss_pred             cCCCCcc
Confidence            9765433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.02  E-value=1.8e-10  Score=109.62  Aligned_cols=95  Identities=17%  Similarity=0.125  Sum_probs=44.1

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      +|++|.+.+..|..+.++++|+.|+|++|.+. + +++ +..+++|++|+|++|+++.+|.    +++|++|++++|++.
T Consensus        40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~-~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-E-TLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNIS  112 (317)
T ss_dssp             ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-E-EEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCS
T ss_pred             ECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-c-chh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccC
Confidence            44455554444444455555555555555543 2 222 4445555555555554444431    244444444444432


Q ss_pred             cCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           82 QNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        82 ~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +..+           ..+++|+.|.++.|.++.
T Consensus       113 ~~~~-----------~~~~~L~~L~l~~N~l~~  134 (317)
T 3o53_A          113 RVSC-----------SRGQGKKNIYLANNKITM  134 (317)
T ss_dssp             EEEE-----------CCCSSCEEEECCSSCCCS
T ss_pred             CcCc-----------cccCCCCEEECCCCCCCC
Confidence            2111           123456666666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.02  E-value=1.6e-09  Score=94.12  Aligned_cols=102  Identities=24%  Similarity=0.271  Sum_probs=78.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |++++|++. .+|..+  .++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus        12 l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            457778875 455444  479999999999996 44445579999999999999999988864 6899999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.+ +|.  ..+     .++++|+.|++..|.+..
T Consensus        88 l~~-~~~--~~~-----~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           88 LQS-LPN--GVF-----DKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             CCC-CCT--TTT-----TTCTTCCEEECCSSCCSC
T ss_pred             ccc-cCH--HHh-----hCCcccCEEECcCCcceE
Confidence            653 221  112     267788888888887765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.01  E-value=3.5e-10  Score=98.43  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             CcccCCCCCCcCCccccCCC-CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhh-hcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i-~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.. +|. +..+. +|+.|+|++|.+. + + ..++.+++|++|+|++|.++.+|..+ ..+++|++|+|++|
T Consensus        24 L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~-~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           24 LDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   98 (176)
T ss_dssp             EECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             EEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC-c-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence            5789999874 454 66655 9999999999996 3 5 67999999999999999999888655 89999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++ +.+|.+. .+     .++++|+.|.+..|.+..
T Consensus        99 ~i-~~~~~~~-~l-----~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           99 SL-VELGDLD-PL-----ASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CC-CCGGGGG-GG-----GGCTTCCEEECCSSGGGG
T ss_pred             cC-CcchhhH-hh-----hcCCCCCEEEecCCCCCC
Confidence            85 4344311 23     378899999999888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.00  E-value=1.9e-10  Score=117.15  Aligned_cols=104  Identities=23%  Similarity=0.141  Sum_probs=64.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..+ .+..+++|+.|+|++|.+. +..| ..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|
T Consensus       378 L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          378 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             EECCSCSEEEEEE-EEETCTTCCEEECTTSEEE-SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EECCCCccccccc-cccccCCCCEEEccCCccc-cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            4567777655443 3777777777777777775 3333 35667777777777777777 45566777777777777777


Q ss_pred             ccc-cCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KML-QNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l-~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+. +.+|.   .+.     ++++|+.|+++.|.++.
T Consensus       456 ~l~~~~~p~---~~~-----~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          456 SFQENFLPD---IFT-----ELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             EEGGGEECS---CCT-----TCTTCCEEECTTSCCCE
T ss_pred             cCccccchh---hhh-----cccCCCEEECCCCcccc
Confidence            654 33442   222     45555555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.99  E-value=2.9e-10  Score=98.90  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=83.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCccc-CCCCCCCEEeccCCCCcccch--hhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~   77 (372)
                      |+|++|.+.+.  +.+..+++|+.|+|++|.+.  .+|..+ ..+++|++|+|++|.++.+|.  .+..+++|+.|++++
T Consensus        47 L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           47 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             EECCSSCCCEE--CCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCcc--cccccCCCCCEEECCCCccc--ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC
Confidence            68999999876  67999999999999999996  377655 899999999999999999997  899999999999999


Q ss_pred             cccccCCCCCCcccccccccCCcccccccCcCccC
Q 017394           78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l  112 (372)
                      |.+. .+|.   . +...+..+++|+.|++..|..
T Consensus       123 N~i~-~~~~---~-~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          123 NPVT-NKKH---Y-RLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SGGG-GSTT---H-HHHHHHHCTTCSEETTEECCH
T ss_pred             CCCC-CcHh---H-HHHHHHHCCccceeCCCcCCH
Confidence            9864 3332   1 001133778888888776644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.98  E-value=1.3e-09  Score=103.45  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=50.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |++++|.+.. +| .+..+++|+.|+|++|.+.  .+|. +..+++|++|+|++|.++.+| .+..+++|+.|+|++|.+
T Consensus        46 L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~--~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l  119 (308)
T 1h6u_A           46 LSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT--DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI  119 (308)
T ss_dssp             EECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC
T ss_pred             EEeeCCCccC-ch-hhhccCCCCEEEccCCcCC--CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC
Confidence            4566666644 33 4677777777777777774  2555 777777777777777777665 567777777777777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.98  E-value=2.3e-09  Score=111.94  Aligned_cols=80  Identities=23%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCC-CCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGE-GAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~-~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..+..+++|+.|++++|.+.. +.+|..+..+++|+.|+|++|+++.+|. .+..+++|++|+|++|
T Consensus       435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence            3566666665555555556666666666655421 2345555556666666666666554443 3555556666666655


Q ss_pred             cc
Q 017394           79 KM   80 (372)
Q Consensus        79 ~~   80 (372)
                      ++
T Consensus       515 ~l  516 (680)
T 1ziw_A          515 NL  516 (680)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.98  E-value=2.4e-09  Score=107.43  Aligned_cols=105  Identities=23%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+ +| .++++++|++|++++|++.  .+|..+   .+|++|++++|+++.+| .++.+++|++|++++|++
T Consensus       136 L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~--~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          136 LGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK--KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS--CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             EECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc--ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence            4567777765 55 4777777777777777775  266543   47777777777777777 577888888888888875


Q ss_pred             ccCCCCCCcccccccccC-----------CcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDG-----------CVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~-----------c~sL~~l~~~~n~l~~  114 (372)
                      .+ +|..+.+++.|++++           +++|+.|+++.|.++.
T Consensus       208 ~~-l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          208 KK-LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             SS-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             Cc-CCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence            43 777766676665544           3455555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=108.73  Aligned_cols=112  Identities=18%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..|..|.++++|+.|+|++|++.  .+|. .+.++++|++|+|++|+++.+ |..+..+++|+.|+|++|
T Consensus        61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             EECCCCccCEeChhhhhCCccCCEEECCCCcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            578999999988999999999999999999996  3665 578999999999999999954 567889999999999998


Q ss_pred             ccccCCCCCC---cccccccc-------------cCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLP---ARIQGISL-------------DGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp---~~l~~L~~-------------~~c~sL~~l~~~~n~l~~  114 (372)
                      .+.+..|...   .+|+.|++             .++++|+.|.+..|.+..
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            8654333211   23444432             345566666666665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.96  E-value=1.6e-09  Score=116.55  Aligned_cols=78  Identities=19%  Similarity=0.261  Sum_probs=46.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|++..+|. .+..+++|++|+|++|.
T Consensus       295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             EEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             EECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            345566665555555666666666666666664 4445556666666666666666664443 45566666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=1.7e-09  Score=103.87  Aligned_cols=101  Identities=20%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             cccCC-CCCCcCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394            2 PWSSD-PVALSLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         2 ~Ls~N-~i~~~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n   78 (372)
                      +++++ .+. .+|. |..+++|+.|+|++ |.|. +..|..|+.|++|+.|+|++|+|+.+| ..|..|++|++|+|++|
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            56676 665 4788 99999999999996 9996 444467999999999999999999666 57899999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++.+ +|   ..+.     ....|+.|.+..|.+..
T Consensus        91 ~l~~-~~---~~~~-----~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALES-LS---WKTV-----QGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSC-CC---STTT-----CSCCCCEEECCSSCCCC
T ss_pred             ccce-eC---HHHc-----ccCCceEEEeeCCCccC
Confidence            8653 33   2221     12228888888887654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.95  E-value=1.3e-09  Score=96.77  Aligned_cols=104  Identities=20%  Similarity=0.183  Sum_probs=87.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+. .+|..+.++++|+.|+|++|.++ +..|..|..+++|+.|+|++|+++.+|. .|..+++|++|+|++|+
T Consensus        36 L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             EECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            578999996 77889999999999999999997 5556679999999999999999997774 79999999999999998


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.. +|.  ..+     .++++|+.|.+..|.+..
T Consensus       114 l~~-~~~--~~~-----~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          114 ISV-VPE--GAF-----NDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCB-CCT--TTT-----TTCTTCCEEECCSSCEEC
T ss_pred             CCe-eCh--hhh-----hcCccccEEEeCCCCeec
Confidence            543 332  112     367899999999998765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.95  E-value=1.7e-10  Score=116.94  Aligned_cols=100  Identities=12%  Similarity=-0.015  Sum_probs=70.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhh-cCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIY-RLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~-~L~~L~~L~L~~n   78 (372)
                      |+|++|.+.+..+.   .+++|+.|+|++|.++ +..|..++.+++|+.|+|++|.++ ..|..+. .+++|+.|+|++|
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            46777777766543   4577888888888886 666777888888888888888888 4556665 6788888888888


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+.+. |.    .     ..+++|+.|+++.|.+++
T Consensus       180 ~l~~~-~~----~-----~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          180 FIYDV-KG----Q-----VVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CCCEE-EC----C-----CCCTTCCEEECCSSCCCE
T ss_pred             ccccc-cc----c-----ccCCCCCEEECCCCCCCC
Confidence            75432 21    1     146677777777776655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.95  E-value=2.8e-09  Score=106.97  Aligned_cols=105  Identities=22%  Similarity=0.236  Sum_probs=70.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+ +| .++++++|+.|++++|.+.  .+|...   ++|+.|++++|.++.+| .+..+++|++|++++|++
T Consensus       178 L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~--~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          178 IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK--KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS--SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             EECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC--cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence            4566666655 44 4777777777777777774  255432   46777777777777777 477888888888888875


Q ss_pred             ccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~  114 (372)
                      . .+|..+.+++.|+++++         ++|+.|+++.|.+++
T Consensus       250 ~-~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          250 K-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             S-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             C-cccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc
Confidence            4 47776667777766544         345556666555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.91  E-value=3.1e-10  Score=108.06  Aligned_cols=75  Identities=12%  Similarity=0.034  Sum_probs=40.0

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhh-hcCCCCcEEEccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASI-YRLSSLRGIKLEECK   79 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i-~~L~~L~~L~L~~n~   79 (372)
                      +|++|.+.+..+.   .+++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+ |..+ ..+++|++|+|++|.
T Consensus       105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             ECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            4555555444332   2455666666666664 33344555566666666666666633 2333 345666666666665


Q ss_pred             c
Q 017394           80 M   80 (372)
Q Consensus        80 ~   80 (372)
                      +
T Consensus       181 l  181 (317)
T 3o53_A          181 I  181 (317)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.89  E-value=5.1e-09  Score=108.98  Aligned_cols=75  Identities=23%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+... | .+..|++|+.|+|++|.+. + +|. +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|.+
T Consensus        48 L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l  121 (605)
T 1m9s_A           48 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-D-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGI  121 (605)
T ss_dssp             CBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-C-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCC
T ss_pred             EECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-C-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCC
Confidence            46677776443 3 4677777777777777775 2 444 777777777777777777666 567777777777777764


Q ss_pred             c
Q 017394           81 L   81 (372)
Q Consensus        81 l   81 (372)
                      .
T Consensus       122 ~  122 (605)
T 1m9s_A          122 S  122 (605)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.89  E-value=4.3e-09  Score=99.19  Aligned_cols=98  Identities=20%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |++++|.+... | .+..+++|+.|+|++|++..  ++. +..+++|++|+|++|.++.+|. +..+++|++|+|++|.+
T Consensus        51 L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i  124 (291)
T 1h6t_A           51 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI  124 (291)
T ss_dssp             EECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCC
T ss_pred             EEccCCCcccC-h-hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcC
Confidence            46777777544 3 47788888888888888852  555 8888888888888888888774 88888888888888874


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .. ++    .+     .++++|+.|+++.|.++.
T Consensus       125 ~~-~~----~l-----~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A          125 SD-IN----GL-----VHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CC-CG----GG-----GGCTTCCEEECCSSCCCC
T ss_pred             CC-Ch----hh-----cCCCCCCEEEccCCcCCc
Confidence            43 22    12     256666666666665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.87  E-value=2.2e-09  Score=99.74  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=54.3

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      +|+.|.+....  .+..+++|+.|+|++|.+.  .+| .+..+++|+.|+|++|+++.+|. +..+++|++|+|++|++.
T Consensus        25 ~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           25 NLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             HHTCSCTTSEE--CHHHHTTCSEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred             HhcCCCccccc--chhhcCcCcEEECcCCCcc--cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence            45666665432  4667777788888887774  366 57777778888888887777776 777777888888877743


Q ss_pred             cCCCC
Q 017394           82 QNLPR   86 (372)
Q Consensus        82 ~~lP~   86 (372)
                      + +|.
T Consensus        99 ~-l~~  102 (263)
T 1xeu_A           99 N-LNG  102 (263)
T ss_dssp             C-CTT
T ss_pred             C-cCc
Confidence            3 443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.87  E-value=6.7e-09  Score=108.44  Aligned_cols=102  Identities=23%  Similarity=0.274  Sum_probs=83.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |++++|.+. .+|..+.  ++|+.|+|++|++.  .+|.   .+++|++|+|++|+++.+|.   .+++|++|+|++|++
T Consensus        45 L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           45 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL  113 (622)
T ss_dssp             EECCSSCCS-CCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred             EEecCCCcC-ccChhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence            578889986 7777665  79999999999995  4887   57899999999999999997   778999999999984


Q ss_pred             ccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~  114 (372)
                       ..+|..+.+|+.|+++++         ++|++|+++.|.++.
T Consensus       114 -~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          114 -THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS  155 (622)
T ss_dssp             -CCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             -CCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC
Confidence             447777778888877665         678888888887665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.87  E-value=7.4e-09  Score=98.96  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=36.2

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      ++++|.+.. +| .+..+++|++|+|++|.+.  .+|. +..+++|++|+|++|.++.+| .+..+++|++|++++|.
T Consensus        50 ~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~  121 (347)
T 4fmz_A           50 VVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN  121 (347)
T ss_dssp             ECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred             EEeCCcccc-ch-hhhhcCCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence            344444432 22 2455555555555555553  2333 555555555555555555544 35555555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.86  E-value=2.4e-09  Score=102.71  Aligned_cols=80  Identities=21%  Similarity=0.120  Sum_probs=71.1

Q ss_pred             CcccC-CCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSS-DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~-N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++ |.+.+..|..|.+|++|+.|+|++|+|+ +..|..|..|++|+.|+|++|+|+.+|..+.....|+.|+|.+|+
T Consensus        36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             EEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence            68996 9999988899999999999999999997 666778999999999999999999999766555559999999998


Q ss_pred             cc
Q 017394           80 ML   81 (372)
Q Consensus        80 ~l   81 (372)
                      +.
T Consensus       115 ~~  116 (347)
T 2ifg_A          115 LH  116 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=1.5e-11  Score=109.18  Aligned_cols=101  Identities=18%  Similarity=0.119  Sum_probs=85.3

Q ss_pred             CcccCCCCCCcCCc------cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEE
Q 017394            1 MPWSSDPVALSLSS------SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIK   74 (372)
Q Consensus         1 L~Ls~N~i~~~lP~------si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~   74 (372)
                      ++|+.+.+.+.+|+      .+..+++|+.|+|++|.+..  +| .+..+++|++|+|++|.++.+|..+..+++|++|+
T Consensus        23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred             cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence            46788888888887      89999999999999999963  88 89999999999999999999999888899999999


Q ss_pred             ccccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           75 LEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        75 L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      |++|++.+ +|    .+     .++++|+.|++..|.+..
T Consensus       100 L~~N~l~~-l~----~~-----~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A          100 ISYNQIAS-LS----GI-----EKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             EEEEECCC-HH----HH-----HHHHHSSEEEESEEECCC
T ss_pred             CcCCcCCc-CC----cc-----ccCCCCCEEECCCCcCCc
Confidence            99998543 33    23     367788888888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.85  E-value=2.3e-10  Score=108.94  Aligned_cols=75  Identities=15%  Similarity=0.245  Sum_probs=34.3

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCC-CCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGA-IPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~-lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n   78 (372)
                      +|++|.+.+..|. +..+++|+.|+|++|.+. +. +|..+..+++|+.|+|++|.++ ..|..+..+++|++|+|++|
T Consensus        76 ~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           76 RCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             ECTTCEECSCCCS-CCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             EcCCccccccchh-hccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            3444444444333 334455555555555443 22 4444444444444444444444 34444444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.85  E-value=4.6e-09  Score=109.67  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhh---------------
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIY---------------   65 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~---------------   65 (372)
                      |+|++|.+. .+|.   .+++|+.|+|++|+++  .+|.   .+++|++|+|++|+++.+|..+.               
T Consensus        66 L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~l  136 (622)
T 3g06_A           66 LVIPDNNLT-SLPA---LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL  136 (622)
T ss_dssp             EEECSCCCS-CCCC---CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCC
T ss_pred             EEecCCCCC-CCCC---cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcC
Confidence            456666665 3444   4566666666666664  3555   44555555555555555554100               


Q ss_pred             --cCCCCcEEEccccccccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394           66 --RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH  114 (372)
Q Consensus        66 --~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~  114 (372)
                        .+++|++|+|++|++ ..+|..+.+++.|++.++         ++|+.|+++.|.++.
T Consensus       137 p~~l~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          137 PVLPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             CCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             CCCCCCCCEEECcCCcC-CCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence              124555555555543 234555555555544333         556666666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.84  E-value=9e-09  Score=96.99  Aligned_cols=98  Identities=20%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|  +.++++|+.|+|++|.+..  +|. +..+++|+.|+|++|+++.+| .+..+++|+.|++++|++
T Consensus        73 L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           73 LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             EEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcC
Confidence            5799999977544  9999999999999999963  554 999999999999999999886 789999999999999985


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ ++    .+     ..+++|+.|+++.|.+..
T Consensus       147 ~~-~~----~l-----~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          147 TD-IT----VL-----SRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CC-CG----GG-----GGCTTCSEEECCSSCCCC
T ss_pred             Cc-ch----hh-----ccCCCCCEEEccCCcccc
Confidence            43 22    23     378889999998887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.82  E-value=1.4e-08  Score=94.31  Aligned_cols=97  Identities=20%  Similarity=0.202  Sum_probs=67.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.. +| .+..+++|+.|+|++|.+.  .+|. +..+++|+.|+|++|+++.+|....  ++|+.|+|++|.+
T Consensus        46 L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l  118 (263)
T 1xeu_A           46 FNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL  118 (263)
T ss_dssp             EECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC
T ss_pred             EECcCCCccc-ch-HHhhCCCCCEEECCCCccC--CChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCcc
Confidence            4677887754 44 5778888888888888885  3665 8888888888888888887775333  7888888888874


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ +|.    +     .++++|+.|+++.|.++.
T Consensus       119 ~~-~~~----l-----~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          119 RD-TDS----L-----IHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             SB-SGG----G-----TTCTTCCEEECTTSCCCB
T ss_pred             CC-Chh----h-----cCcccccEEECCCCcCCC
Confidence            43 221    2     255666666666665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.82  E-value=1e-08  Score=97.32  Aligned_cols=98  Identities=20%  Similarity=0.324  Sum_probs=77.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+.  +.+..+++|+.|+|++|.+..  +|. +..+++|+.|+|++|.++.+|. +..+++|++|+|++|++
T Consensus        90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A           90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC
Confidence            57899998764  468999999999999999963  665 8999999999999999998886 88999999999999975


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .. ++.    +     .++++|+.|+++.|.+..
T Consensus       164 ~~-~~~----l-----~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          164 SD-LTP----L-----ANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CC-CGG----G-----TTCTTCCEEECCSSCCCC
T ss_pred             CC-Chh----h-----cCCCCCCEEECCCCccCc
Confidence            43 222    2     256666666666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.80  E-value=1.8e-08  Score=100.83  Aligned_cols=98  Identities=19%  Similarity=0.334  Sum_probs=68.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+.  +.+..+++|+.|+|++|.+. + ++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|++
T Consensus       226 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-N-LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL  299 (466)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred             EECCCCCcccc--hhhhcCCCCCEEECCCCccc-c-chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc
Confidence            46778887653  45778888888888888886 3 333 7788888888888888887775 77888888888888875


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ ++.         +..+++|+.|++..|.+..
T Consensus       300 ~~-~~~---------~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          300 ED-ISP---------ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             SC-CGG---------GGGCTTCSEEECCSSCCSC
T ss_pred             cC-chh---------hcCCCCCCEEECcCCcCCC
Confidence            43 221         2255566666666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.79  E-value=5.3e-10  Score=106.40  Aligned_cols=110  Identities=25%  Similarity=0.357  Sum_probs=72.8

Q ss_pred             CcccCCCCCCc-CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCc--ccchhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVALS-LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFV--TLLASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~~-lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~--~lP~~i~~L~~L~~L~L~   76 (372)
                      |+|++|.+.+. +|..+..+++|+.|+|++|.+. +.+|..++.+++|++|+|++| .++  .+|..+..+++|++|+|+
T Consensus        98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B           98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             EEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            46777777655 6667777777888888877775 566777777777777777777 566  367667777777777777


Q ss_pred             cc-ccccC-CC----CCCcccccccccC----------------CcccccccCcCcc
Q 017394           77 EC-KMLQN-LP----RLPARIQGISLDG----------------CVSLETLSDVLNL  111 (372)
Q Consensus        77 ~n-~~l~~-lP----~lp~~l~~L~~~~----------------c~sL~~l~~~~n~  111 (372)
                      +| .+... ++    .+|.+|+.|++++                |++|+.|++..|.
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            77 43321 12    1222455554443                4567777777776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.78  E-value=1.7e-08  Score=96.38  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      ++++|.+....+  +..+++|+.|++++|.+.  .++. +..+++|+.|++++|.+..++. +..+++|+.|++++|+
T Consensus       161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIE--DISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCSEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             EecCCCcCCchh--hccCCCCCEEEccCCccc--cccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc
Confidence            455565544332  556666666666666663  2433 5555555555555555554443 4555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.78  E-value=1.4e-08  Score=101.54  Aligned_cols=107  Identities=20%  Similarity=0.295  Sum_probs=64.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|  +.++++|++|+|++|.+. + +|. ++.+++|++|+|++|.++.+|. +..+++|++|++++|.+
T Consensus        73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l  146 (466)
T 1o6v_A           73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIA-D-ITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI  146 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-C-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEE
T ss_pred             EECCCCccCCchh--hhccccCCEEECCCCccc-c-Chh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCcc
Confidence            4566666655433  667777777777777764 2 444 6777777777777777776664 67777777777777763


Q ss_pred             ccCCCCCC--ccccccc----------ccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLP--ARIQGIS----------LDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp--~~l~~L~----------~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ +|.+.  .+++.|+          +.++++|+.|+++.|.+..
T Consensus       147 ~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          147 SD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence            32 33211  1222222          3456677777777666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.78  E-value=2.6e-08  Score=100.01  Aligned_cols=72  Identities=19%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      +|++|...+.+  .+..+++|+.|+|++|++..  +|  ++.+++|+.|++++|+++.++  +..+++|++|++++|++.
T Consensus       154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             ECCCCCccccc--ccccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc
Confidence            45566444444  25566666666666666642  44  555556666666666555543  555555556666555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.77  E-value=7.9e-09  Score=99.71  Aligned_cols=81  Identities=19%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCE-EeccCCCCcccc-hhhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEE-LHLSGNNFVTLL-ASIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~-L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~   77 (372)
                      |+|++|+|....+..|.+|++|+.|+|++|++. +.+|. .|.++++|.. +.+.+|+++.+| ..+..+++|++|++++
T Consensus        35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~  113 (350)
T 4ay9_X           35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN  113 (350)
T ss_dssp             EEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred             EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence            578999998666667899999999999999986 66765 4788888775 566789999775 5688999999999999


Q ss_pred             ccccc
Q 017394           78 CKMLQ   82 (372)
Q Consensus        78 n~~l~   82 (372)
                      |++..
T Consensus       114 n~l~~  118 (350)
T 4ay9_X          114 TGIKH  118 (350)
T ss_dssp             ECCSS
T ss_pred             ccccc
Confidence            98543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.75  E-value=8.4e-09  Score=93.76  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=79.1

Q ss_pred             CcccCCC-CCCcCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCc---EEEc
Q 017394            1 MPWSSDP-VALSLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLR---GIKL   75 (372)
Q Consensus         1 L~Ls~N~-i~~~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~---~L~L   75 (372)
                      |+|++|. +....+..|.++++|+.|+|++ |.+. +..|..+..+++|++|+|++|+++.+|. +..+++|+   +|++
T Consensus        60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l  137 (239)
T 2xwt_C           60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEI  137 (239)
T ss_dssp             EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEE
T ss_pred             EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEEC
Confidence            5788997 7766666889999999999998 8885 3333568899999999999999999997 88888888   9999


Q ss_pred             cccccccCCCCCCcccccccccCCcccc-cccCcCccCC
Q 017394           76 EECKMLQNLPRLPARIQGISLDGCVSLE-TLSDVLNLNE  113 (372)
Q Consensus        76 ~~n~~l~~lP~lp~~l~~L~~~~c~sL~-~l~~~~n~l~  113 (372)
                      ++|..+..+|.  ..+     .++++|+ .|+++.|.++
T Consensus       138 ~~N~~l~~i~~--~~~-----~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          138 TDNPYMTSIPV--NAF-----QGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             ESCTTCCEECT--TTT-----TTTBSSEEEEECCSCCCC
T ss_pred             CCCcchhhcCc--ccc-----cchhcceeEEEcCCCCCc
Confidence            99932443432  112     2667777 7777776655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.74  E-value=2.7e-08  Score=103.51  Aligned_cols=98  Identities=20%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|  +..|++|+.|+|++|.+..  +| .+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|.+
T Consensus        70 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l  143 (605)
T 1m9s_A           70 LFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI  143 (605)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc
Confidence            5788898877554  8889999999999998862  55 6888899999999999988876 588888899999988875


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+ ++.    +     ..|++|+.|+++.|.+..
T Consensus       144 ~~-l~~----l-----~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          144 TD-ITV----L-----SRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CC-CGG----G-----GSCTTCSEEECCSSCCCC
T ss_pred             CC-chh----h-----cccCCCCEEECcCCcCCC
Confidence            43 221    1     244555555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.69  E-value=8e-09  Score=100.04  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC----cccCCCC-CCCEEeccCCCCccc-chhhhcC-----CCC
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP----SSIGDLC-SLEELHLSGNNFVTL-LASIYRL-----SSL   70 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP----~~i~~L~-~L~~L~Ls~N~l~~l-P~~i~~L-----~~L   70 (372)
                      .|+.|.+.+.+|..+...++|+.|+|++|.+. +.-+    ..+..++ +|+.|+|++|.++.. +..+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            57888898888887776777999999999885 3333    5677788 899999999988843 5566664     889


Q ss_pred             cEEEcccccccc
Q 017394           71 RGIKLEECKMLQ   82 (372)
Q Consensus        71 ~~L~L~~n~~l~   82 (372)
                      ++|+|++|.+..
T Consensus        83 ~~L~Ls~n~l~~   94 (362)
T 3goz_A           83 TSLNLSGNFLSY   94 (362)
T ss_dssp             CEEECCSSCGGG
T ss_pred             cEEECcCCcCCh
Confidence            999999888654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.67  E-value=2.2e-10  Score=101.67  Aligned_cols=102  Identities=25%  Similarity=0.240  Sum_probs=84.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+ +| .+.++++|+.|+|++|.+.  .+|..+..+++|++|+|++|+++.+| .+..+++|++|+|++|++
T Consensus        53 L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           53 LALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEEC
T ss_pred             EECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcC
Confidence            5789999877 67 8999999999999999995  59988888899999999999999998 799999999999999985


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .. +|.+ ..     +..+++|+.|.+..|.+..
T Consensus       128 ~~-~~~~-~~-----l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          128 TN-WGEI-DK-----LAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CC-HHHH-HH-----HTTTTTCSEEEECSCHHHH
T ss_pred             Cc-hhHH-HH-----HhcCCCCCEEEecCCcccc
Confidence            32 2211 12     3378899999998887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.59  E-value=6.6e-09  Score=100.65  Aligned_cols=81  Identities=16%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             CcccCCCCCCcCC----ccccCCC-CCCEEeecCCCCCCCCCCcccCCC-----CCCCEEeccCCCCcccc-hh----hh
Q 017394            1 MPWSSDPVALSLS----SSLSGLC-SLTKLDISYCDLGEGAIPSSIGDL-----CSLEELHLSGNNFVTLL-AS----IY   65 (372)
Q Consensus         1 L~Ls~N~i~~~lP----~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L-----~~L~~L~Ls~N~l~~lP-~~----i~   65 (372)
                      |+|++|.+....+    ..+.+++ +|+.|+|++|.+. +..+..+..+     ++|++|+|++|.++..+ ..    +.
T Consensus        27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  105 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA  105 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence            6899999888777    6788888 8999999999996 5556666664     89999999999998444 43    44


Q ss_pred             cC-CCCcEEEcccccccc
Q 017394           66 RL-SSLRGIKLEECKMLQ   82 (372)
Q Consensus        66 ~L-~~L~~L~L~~n~~l~   82 (372)
                      .+ ++|+.|+|++|.+..
T Consensus       106 ~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A          106 AIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             TSCTTCCEEECCSSCGGG
T ss_pred             hCCCCccEEECcCCcCCc
Confidence            55 899999999998544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.58  E-value=3.7e-09  Score=103.01  Aligned_cols=81  Identities=19%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             CcccCCCCCCcC----CccccCCCCCCEEeecCCCCCC--CCCCccc-------CCCCCCCEEeccCCCCcc-----cch
Q 017394            1 MPWSSDPVALSL----SSSLSGLCSLTKLDISYCDLGE--GAIPSSI-------GDLCSLEELHLSGNNFVT-----LLA   62 (372)
Q Consensus         1 L~Ls~N~i~~~l----P~si~~L~~L~~L~Ls~n~l~~--~~lP~~i-------~~L~~L~~L~Ls~N~l~~-----lP~   62 (372)
                      |+|++|.+....    +..+..+++|+.|+|++|.+..  +.+|..+       ..+++|++|+|++|.+..     +|.
T Consensus        37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  116 (386)
T 2ca6_A           37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID  116 (386)
T ss_dssp             EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence            578888887763    3447788899999998874421  3456554       678899999999998885     788


Q ss_pred             hhhcCCCCcEEEccccccc
Q 017394           63 SIYRLSSLRGIKLEECKML   81 (372)
Q Consensus        63 ~i~~L~~L~~L~L~~n~~l   81 (372)
                      .+..+++|++|+|++|.+.
T Consensus       117 ~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          117 FLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCH
T ss_pred             HHHhCCCCCEEECcCCCCC
Confidence            8888899999999988753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.47  E-value=2.9e-08  Score=96.59  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             CcccCCCCC-CcCC---ccccCCCCCCEEeecCCCCCCC----CCCcccCCCCCCCEEeccCCCC-----cccchhhhcC
Q 017394            1 MPWSSDPVA-LSLS---SSLSGLCSLTKLDISYCDLGEG----AIPSSIGDLCSLEELHLSGNNF-----VTLLASIYRL   67 (372)
Q Consensus         1 L~Ls~N~i~-~~lP---~si~~L~~L~~L~Ls~n~l~~~----~lP~~i~~L~~L~~L~Ls~N~l-----~~lP~~i~~L   67 (372)
                      |+|++|.+. +.+|   ..+..+++|+.|+|++|.+...    .+|..+..+++|+.|+|++|.+     ..+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            467777776 4444   3566777888888888877411    2344677788888888888887     4677778888


Q ss_pred             CCCcEEEccccccccCCC-CCCcccccccccCCcccccccCcCccCCC
Q 017394           68 SSLRGIKLEECKMLQNLP-RLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        68 ~~L~~L~L~~n~~l~~lP-~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++|++|+|++|.+...-. .+|..+   ....+++|++|+++.|.+..
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l---~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAF---SKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHH---HTCSSCCCCEEECCSSCCBH
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHH---hhccCCCeEEEECcCCcCCH
Confidence            888888888887543200 011111   11236777778877777655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.37  E-value=6e-08  Score=96.04  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CcccCCCCCCc----CCccccCCCCCCEEeecCCCCCCCC----C-CcccCCCCCCCEEeccCCCCcc-----cchhhhc
Q 017394            1 MPWSSDPVALS----LSSSLSGLCSLTKLDISYCDLGEGA----I-PSSIGDLCSLEELHLSGNNFVT-----LLASIYR   66 (372)
Q Consensus         1 L~Ls~N~i~~~----lP~si~~L~~L~~L~Ls~n~l~~~~----l-P~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~   66 (372)
                      |+|++|.+...    +|..+..+++|+.|+|++|.+. +.    + +..+..+++|+.|+|++|.++.     +|..+..
T Consensus       204 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  282 (461)
T 1z7x_W          204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG-DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA  282 (461)
T ss_dssp             EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH-HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC-hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence            45666666553    4556666777777777777764 21    1 2223356777777777777774     6767777


Q ss_pred             CCCCcEEEcccccc
Q 017394           67 LSSLRGIKLEECKM   80 (372)
Q Consensus        67 L~~L~~L~L~~n~~   80 (372)
                      +++|+.|+|++|.+
T Consensus       283 ~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          283 KESLKELSLAGNEL  296 (461)
T ss_dssp             CTTCCEEECTTCCC
T ss_pred             CCCcceEECCCCCC
Confidence            77777777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.29  E-value=7.6e-07  Score=85.69  Aligned_cols=102  Identities=19%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             cccC-CCCCCcCCccccCCC-CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-CCCcccch-hhhcCCCCcEEEccc
Q 017394            2 PWSS-DPVALSLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-NNFVTLLA-SIYRLSSLRGIKLEE   77 (372)
Q Consensus         2 ~Ls~-N~i~~~lP~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-N~l~~lP~-~i~~L~~L~~L~L~~   77 (372)
                      ++++ |.+....+..+..+. .|+.|+|++|++.  .||..+....+|+.|++++ |.++.||. .|..+++|+.|+|++
T Consensus       134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  211 (350)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred             hhccccccccccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence            3434 455555555667765 6888999999995  4888877888899999974 77889986 568999999999999


Q ss_pred             cccccCCCC-CCcccccccccCCccccccc
Q 017394           78 CKMLQNLPR-LPARIQGISLDGCVSLETLS  106 (372)
Q Consensus        78 n~~l~~lP~-lp~~l~~L~~~~c~sL~~l~  106 (372)
                      |++ ..+|. ....++.|.+.++..|+.++
T Consensus       212 N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          212 TRI-HSLPSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             SCC-CCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred             CCc-CccChhhhccchHhhhccCCCcCcCC
Confidence            984 45553 34456666666666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.06  E-value=8.4e-07  Score=83.01  Aligned_cols=66  Identities=20%  Similarity=0.258  Sum_probs=37.8

Q ss_pred             CCCCCCEEeecCCCCCCC--CCCcccCCCCCCCEEeccCCCCcccchhhhcCC--CCcEEEccccccccCCC
Q 017394           18 GLCSLTKLDISYCDLGEG--AIPSSIGDLCSLEELHLSGNNFVTLLASIYRLS--SLRGIKLEECKMLQNLP   85 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~--~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~--~L~~L~L~~n~~l~~lP   85 (372)
                      ++++|+.|+|++|+|. +  .+|..+..+++|+.|+|++|+|+.+. .+..+.  +|+.|+|++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            4566666666666665 3  33444556666666666666666542 233333  66666666666554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.96  E-value=8.7e-07  Score=87.60  Aligned_cols=108  Identities=21%  Similarity=0.242  Sum_probs=73.7

Q ss_pred             CcccCCCCCCcCCccccC-----CCCCCEEeecCCCCCCCC----CCcccCCCCCCCEEeccCCCCccc-chhhhc----
Q 017394            1 MPWSSDPVALSLSSSLSG-----LCSLTKLDISYCDLGEGA----IPSSIGDLCSLEELHLSGNNFVTL-LASIYR----   66 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~-----L~~L~~L~Ls~n~l~~~~----lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~----   66 (372)
                      |+|++|.+....+..+..     .++|+.|+|++|.+. +.    +|..+..+++|+.|+|++|.++.. +..+..    
T Consensus       289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  367 (461)
T 1z7x_W          289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ  367 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc-hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence            578888886554433332     368999999999986 33    566677889999999999988833 344432    


Q ss_pred             -CCCCcEEEccccccccC-CCCCCcccccccccCCcccccccCcCccCCC
Q 017394           67 -LSSLRGIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        67 -L~~L~~L~L~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                       .++|+.|+|++|++... +..+|..+.     .+++|+.|+++.|.+..
T Consensus       368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~-----~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          368 PGSVLRVLWLADCDVSDSSCSSLAATLL-----ANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHH-----HCCCCCEEECCSSSCCH
T ss_pred             CCCceEEEECCCCCCChhhHHHHHHHHH-----hCCCccEEECCCCCCCH
Confidence             67999999999975420 001222333     57778888888777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=5e-06  Score=77.71  Aligned_cols=72  Identities=24%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             CcccCCCCCC--cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCC--CCCEEeccCCCCc-ccch-------hhhcCC
Q 017394            1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLC--SLEELHLSGNNFV-TLLA-------SIYRLS   68 (372)
Q Consensus         1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~--~L~~L~Ls~N~l~-~lP~-------~i~~L~   68 (372)
                      |+|++|.+.+  .+|..+..+++|+.|+|++|+|..  + ..+..++  +|+.|+|++|.+. .+|.       .+..++
T Consensus       175 L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P  251 (267)
T 3rw6_A          175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFP  251 (267)
T ss_dssp             EECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCT
T ss_pred             EECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCc
Confidence            6899999998  566777899999999999999973  3 3455555  9999999999998 5662       467889


Q ss_pred             CCcEEEc
Q 017394           69 SLRGIKL   75 (372)
Q Consensus        69 ~L~~L~L   75 (372)
                      +|+.||-
T Consensus       252 ~L~~LDg  258 (267)
T 3rw6_A          252 KLLRLDG  258 (267)
T ss_dssp             TCCEESS
T ss_pred             ccCeECC
Confidence            9988864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.87  E-value=7.7e-07  Score=87.01  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             CcccCCCCCCcCCcccc-CCCCCCEEeecCCCCCCCCCCccc-----CCCCCCCEEeccCCCCcc-----cchhhhcCCC
Q 017394            1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYCDLGEGAIPSSI-----GDLCSLEELHLSGNNFVT-----LLASIYRLSS   69 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n~l~~~~lP~~i-----~~L~~L~~L~Ls~N~l~~-----lP~~i~~L~~   69 (372)
                      |+|++|.+...-...+. .+++|+.|+|++|.+. ..-...+     ...++|+.|+|++|.++.     ++..+..+++
T Consensus       106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  184 (372)
T 3un9_A          106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS  184 (372)
T ss_dssp             EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC
Confidence            46777776543222222 3556777777777764 2111112     234667777777777652     4445566677


Q ss_pred             CcEEEcccccc
Q 017394           70 LRGIKLEECKM   80 (372)
Q Consensus        70 L~~L~L~~n~~   80 (372)
                      |++|+|++|.+
T Consensus       185 L~~L~Ls~N~l  195 (372)
T 3un9_A          185 VTHLSLLHTGL  195 (372)
T ss_dssp             CCEEECTTSSC
T ss_pred             cCEEeCCCCCC
Confidence            77777777763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=6.5e-05  Score=71.34  Aligned_cols=35  Identities=26%  Similarity=0.228  Sum_probs=27.1

Q ss_pred             CCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394           44 LCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus        44 L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      +++|+.|+|++|+++.||. .|.++++|+.|+|.+|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence            5678888888888887774 5777888888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.75  E-value=4.4e-06  Score=85.19  Aligned_cols=61  Identities=16%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             CCCCCCEEeecCCCCCCCC----CCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEccccc
Q 017394           18 GLCSLTKLDISYCDLGEGA----IPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~~----lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      ++++|+.|+|++|.+. +.    ++..+..+++|+.|+|++|.++     .++..+..+++|+.|+|++|.
T Consensus       162 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HCTTCSEEECTTCEEE-CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             hCCCCCEEECcccccc-CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            4555555555555543 22    2223334455555555555543     333344455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.63  E-value=2.4e-06  Score=83.42  Aligned_cols=108  Identities=11%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             CcccCCCCCCcCCccccC-----CCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhh-----hcCCC
Q 017394            1 MPWSSDPVALSLSSSLSG-----LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASI-----YRLSS   69 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~-----L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i-----~~L~~   69 (372)
                      |+|++|.+...-...+..     .++|+.|+|++|.+.+..+..-...+++|+.|+|++|.++... ..+     ...++
T Consensus        77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~  156 (372)
T 3un9_A           77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ  156 (372)
T ss_dssp             EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCC
T ss_pred             EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCc
Confidence            578888887543333332     2689999999998852112222334568899999999887322 222     24678


Q ss_pred             CcEEEccccccccC-CCCCCcccccccccCCcccccccCcCccCC
Q 017394           70 LRGIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        70 L~~L~L~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      |+.|+|++|.+... ...++..+     ..+++|++|+++.|.+.
T Consensus       157 L~~L~Ls~n~l~~~~~~~l~~~L-----~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          157 ITTLRLSNNPLTAAGVAVLMEGL-----AGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHH-----HTCSSCCEEECTTSSCH
T ss_pred             cceeeCCCCCCChHHHHHHHHHH-----hcCCCcCEEeCCCCCCC
Confidence            99999999974320 00111111     24556666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=0.00012  Score=69.53  Aligned_cols=97  Identities=16%  Similarity=0.136  Sum_probs=75.8

Q ss_pred             CCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCc-EEEccccccccCCCCCCccccccc
Q 017394           19 LCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR-GIKLEECKMLQNLPRLPARIQGIS   95 (372)
Q Consensus        19 L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~-~L~L~~n~~l~~lP~lp~~l~~L~   95 (372)
                      +++|+.|+|++|++.  .||. .|.++++|+.|+|..| ++.|+. .|.++.+|+ .|++.+ . +..|+       .-.
T Consensus       225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~-------~~a  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIE-------FGA  292 (329)
T ss_dssp             CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEEC-------TTT
T ss_pred             cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEc-------hhh
Confidence            789999999999995  4776 4899999999999998 888884 689999999 999987 3 33333       223


Q ss_pred             ccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394           96 LDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus        96 ~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~  130 (372)
                      +.+|++|+.+.+..|.+......   .|.+|.+|.
T Consensus       293 F~~c~~L~~l~l~~n~i~~I~~~---aF~~~~~L~  324 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKITTLGDE---LFGNGVPSK  324 (329)
T ss_dssp             TTTCTTEEEEEECSSCCCEECTT---TTCTTCCCC
T ss_pred             hhCCccCCEEEeCCCccCccchh---hhcCCcchh
Confidence            45999999999987776553222   688888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.43  E-value=3.9e-05  Score=78.16  Aligned_cols=40  Identities=15%  Similarity=-0.075  Sum_probs=23.9

Q ss_pred             cCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394           41 IGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        41 i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      +..+++|+.|+++++....+|..+..+++|++|+|++|.+
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            3334444444444443445666667777888888887763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.40  E-value=1e-05  Score=70.99  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=55.4

Q ss_pred             cccCCCCCCEEeecCC-CCCCC---CCCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEccccccccC-C
Q 017394           15 SLSGLCSLTKLDISYC-DLGEG---AIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECKMLQN-L   84 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n-~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~~l~~-l   84 (372)
                      .+...+.|+.|+|++| .+.+.   .+...+...++|++|+|++|.+.     .+...+...+.|++|+|++|.+... .
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3456677888888887 76421   13344566677888888888776     2445566667788888887764221 0


Q ss_pred             CCCCcccccccccCCcccccccC--cCccCC
Q 017394           85 PRLPARIQGISLDGCVSLETLSD--VLNLNE  113 (372)
Q Consensus        85 P~lp~~l~~L~~~~c~sL~~l~~--~~n~l~  113 (372)
                      ..+...+     ..+++|++|++  ..|.+.
T Consensus       111 ~~l~~~L-----~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEAL-----QSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGG-----GGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHH-----HhCCCceEEEecCCCCCCC
Confidence            0011122     25566777777  555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.27  E-value=8.4e-06  Score=83.07  Aligned_cols=61  Identities=20%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             CCCCCCEEeecCCCCCCCCCCcccC-CCCCCCEEeccCC-CCcc--cchhhhcCCCCcEEEccccc
Q 017394           18 GLCSLTKLDISYCDLGEGAIPSSIG-DLCSLEELHLSGN-NFVT--LLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~~L~~L~Ls~N-~l~~--lP~~i~~L~~L~~L~L~~n~   79 (372)
                      .+++|+.|+|++|.++ +..+..+. .+++|+.|+|++| .++.  ++..+..+++|++|+|++|.
T Consensus       103 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HCTTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             hCCCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            4556666666666654 33344443 4566666666666 4442  44444556666666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.13  E-value=0.00012  Score=63.98  Aligned_cols=69  Identities=13%  Similarity=0.180  Sum_probs=48.5

Q ss_pred             cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Ccc-cchhhhcC----CCCcEEEcccccc
Q 017394           11 SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FVT-LLASIYRL----SSLRGIKLEECKM   80 (372)
Q Consensus        11 ~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~~-lP~~i~~L----~~L~~L~L~~n~~   80 (372)
                      .+|.....-..|+.|||++|.+++..+ ..+..+++|+.|+|++|. ++. ==..|..+    ++|++|+|++|..
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            345433233479999999999874333 347889999999999995 661 11245543    4799999999973

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.99  E-value=0.00023  Score=72.36  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=50.5

Q ss_pred             CcccCCCCCCcCCcccc-CCCCCCEEeecCC-CCCCCCCCcccCCCCCCCEEeccCCCCcc-----cchhhhcCCCCcEE
Q 017394            1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYC-DLGEGAIPSSIGDLCSLEELHLSGNNFVT-----LLASIYRLSSLRGI   73 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n-~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~L~~L~~L   73 (372)
                      |+|++|.+.+..+..+. .+++|+.|+|++| .+....++..+..+++|++|+|++|.++.     ++.....+++|+.|
T Consensus       110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L  189 (594)
T 2p1m_B          110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL  189 (594)
T ss_dssp             EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred             EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence            45667766666555554 5778888888887 44311144445567788888888887652     33333356678888


Q ss_pred             Eccccc
Q 017394           74 KLEECK   79 (372)
Q Consensus        74 ~L~~n~   79 (372)
                      ++++|.
T Consensus       190 ~l~~~~  195 (594)
T 2p1m_B          190 NISCLA  195 (594)
T ss_dssp             ECTTCC
T ss_pred             EecccC
Confidence            888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.99  E-value=0.00045  Score=60.35  Aligned_cols=90  Identities=11%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             CCcccCCCCCCCEEeccCCCCc--ccchhhhcCCCCcEEEcccccccc-----CCCCC---CcccccccccCCccccccc
Q 017394           37 IPSSIGDLCSLEELHLSGNNFV--TLLASIYRLSSLRGIKLEECKMLQ-----NLPRL---PARIQGISLDGCVSLETLS  106 (372)
Q Consensus        37 lP~~i~~L~~L~~L~Ls~N~l~--~lP~~i~~L~~L~~L~L~~n~~l~-----~lP~l---p~~l~~L~~~~c~sL~~l~  106 (372)
                      +|.....-..|+.|||+++.++  .+ ..+..+++|+.|+|++|..+.     .|..+   ..+|+.|++++|+.++.--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4543323347999999999987  33 357889999999999997432     12232   2357788888887665422


Q ss_pred             CcC-ccCCCCCCccccccccccccc
Q 017394          107 DVL-NLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus       107 ~~~-n~l~~~~~~l~~~~~nc~kL~  130 (372)
                      +.. ..+ ..+.  .+.+.+|.++.
T Consensus       132 l~~L~~~-~~L~--~L~L~~c~~It  153 (176)
T 3e4g_A          132 IIALHHF-RNLK--YLFLSDLPGVK  153 (176)
T ss_dssp             HHHGGGC-TTCC--EEEEESCTTCC
T ss_pred             HHHHhcC-CCCC--EEECCCCCCCC
Confidence            211 001 0111  23777887775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.94  E-value=0.00017  Score=63.07  Aligned_cols=109  Identities=11%  Similarity=0.116  Sum_probs=77.9

Q ss_pred             CcccCC-CCCCc----CCccccCCCCCCEEeecCCCCCCC---CCCcccCCCCCCCEEeccCCCCcc-----cchhhhcC
Q 017394            1 MPWSSD-PVALS----LSSSLSGLCSLTKLDISYCDLGEG---AIPSSIGDLCSLEELHLSGNNFVT-----LLASIYRL   67 (372)
Q Consensus         1 L~Ls~N-~i~~~----lP~si~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~L   67 (372)
                      |+|++| .+...    +...+...++|+.|+|++|.+.+.   .+...+...++|++|+|++|.+..     +...+...
T Consensus        41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n  120 (185)
T 1io0_A           41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN  120 (185)
T ss_dssp             EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred             EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence            578888 77642    445567788999999999999521   134456667899999999999983     66778888


Q ss_pred             CCCcEEEc--cccccccC-CCCCCcccccccccCCcccccccCcCccCCC
Q 017394           68 SSLRGIKL--EECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        68 ~~L~~L~L--~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.|+.|+|  ++|.+... ...+...+     ..+++|++|++..|.+..
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L-----~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANML-----EKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHH-----HHCSSCCEEECCCSSHHH
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHH-----HhCCCcCEEeccCCCCCh
Confidence            99999999  77874321 00011122     367889999999887643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.89  E-value=0.0018  Score=63.65  Aligned_cols=59  Identities=22%  Similarity=0.281  Sum_probs=24.7

Q ss_pred             ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccc
Q 017394           16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEE   77 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~   77 (372)
                      |.++++|+.++|..|++.  .||...-...+|+.+.|. ++++.|+ ..|.++++|+.+.+..
T Consensus       176 F~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCT
T ss_pred             hhCcccCCeeecCCCcce--EechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCC
Confidence            344444444444444442  233332223444444444 2244343 2344445555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0034  Score=51.70  Aligned_cols=56  Identities=27%  Similarity=0.322  Sum_probs=43.3

Q ss_pred             CEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccccc
Q 017394           23 TKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        23 ~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~   80 (372)
                      ..++.+++.|+...+|..+.  ++|+.|+|++|+|+.||. .|..+++|+.|+|.+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            47888888884125886543  468999999999998885 467888999999998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.76  E-value=0.013  Score=48.18  Aligned_cols=53  Identities=23%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             cccCCCCC-CcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCc
Q 017394            2 PWSSDPVA-LSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFV   58 (372)
Q Consensus         2 ~Ls~N~i~-~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~   58 (372)
                      +.+++++. ..+|..+.  .+|+.|+|++|+|+  .||.. |..+++|+.|+|++|.+.
T Consensus        14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLT--ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS--SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EeCCCCCccccCCCCCC--cCCCEEECCCCcCC--ccChhhhhhccccCEEEecCCCee
Confidence            55677775 36665432  46999999999996  37664 788999999999999876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.70  E-value=0.028  Score=54.99  Aligned_cols=82  Identities=16%  Similarity=0.172  Sum_probs=44.3

Q ss_pred             ccCCCCCCEEeecCCCCCCCCC-CcccCCCCCCCEEeccCCCCc-----ccc-hhhhcCCCCcEEEccccccccCCCCCC
Q 017394           16 LSGLCSLTKLDISYCDLGEGAI-PSSIGDLCSLEELHLSGNNFV-----TLL-ASIYRLSSLRGIKLEECKMLQNLPRLP   88 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~~L~~L~Ls~N~l~-----~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp   88 (372)
                      |.+ .+|+.+.|. +++.  .| +..|.++++|+.+++.+|.+.     .|+ ..|.++++|+.+.|.++  +..|+.  
T Consensus       245 F~~-~~L~~i~lp-~~i~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~--  316 (401)
T 4fdw_A          245 FRE-SGITTVKLP-NGVT--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ--  316 (401)
T ss_dssp             TTT-CCCSEEEEE-TTCC--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT--
T ss_pred             ccc-CCccEEEeC-CCcc--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh--
Confidence            444 567777773 3342  24 334666777777777666554     344 35666777777766532  222221  


Q ss_pred             cccccccccCCcccccccCcCc
Q 017394           89 ARIQGISLDGCVSLETLSDVLN  110 (372)
Q Consensus        89 ~~l~~L~~~~c~sL~~l~~~~n  110 (372)
                           -.+.+|++|+.+.++.+
T Consensus       317 -----~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          317 -----GLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             -----TTTTTCCSCCEEEECTT
T ss_pred             -----hhhcCCCCccEEEECcc
Confidence                 12335666666665443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.40  E-value=0.0027  Score=61.60  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=44.8

Q ss_pred             cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhh--cCCCCcEEEccc
Q 017394           11 SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIY--RLSSLRGIKLEE   77 (372)
Q Consensus        11 ~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~--~L~~L~~L~L~~   77 (372)
                      .+++.+..+++|+.|+|++|.-.  .+|. +. +++|+.|+|..+.+. ..-..+.  .+++|+.|+|+.
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l--~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL--SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC--BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc--eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            35555677899999999988421  2554 43 889999999988876 2223343  789999999863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.23  E-value=0.0035  Score=60.75  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             CCCCCCEEeecC--CCCCCCC-----CCccc--CCCCCCCEEeccCCCCc-ccchhhh---cCCCCcEEEccccccccCC
Q 017394           18 GLCSLTKLDISY--CDLGEGA-----IPSSI--GDLCSLEELHLSGNNFV-TLLASIY---RLSSLRGIKLEECKMLQNL   84 (372)
Q Consensus        18 ~L~~L~~L~Ls~--n~l~~~~-----lP~~i--~~L~~L~~L~Ls~N~l~-~lP~~i~---~L~~L~~L~L~~n~~l~~l   84 (372)
                      .+++|+.|+|+.  +... +.     +...+  ..+++|+.|+|.+|.+. ..+..+.   .+++|+.|+|+.|.+...-
T Consensus       217 ~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             BCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             cCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence            789999999964  2211 11     11222  35789999999999987 3444443   5789999999998753310


Q ss_pred             -CCCCcccccccccCCcccccccCcCccCCC
Q 017394           85 -PRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        85 -P~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                       ..++..+.     .+++|+.|++..|.++.
T Consensus       296 ~~~L~~~L~-----~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          296 ARLLLDHVD-----KIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHHTTHH-----HHTTCSEEECCSBBCCH
T ss_pred             HHHHHhhcc-----cCCcceEEECCCCcCCH
Confidence             01222222     67889999998887653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.07  E-value=0.27  Score=46.76  Aligned_cols=101  Identities=17%  Similarity=0.241  Sum_probs=58.2

Q ss_pred             ccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCccc
Q 017394           14 SSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARI   91 (372)
Q Consensus        14 ~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l   91 (372)
                      ..+.++..|+.+.+..+ +.  .|. ..+.++.+|+.+.+.. +++.++. .+..+.+|+.+.+.++.. ..|+      
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i-~~I~------  302 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI-ETLE------  302 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC-CEEC------
T ss_pred             ccccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccccccccccccccc-ceeh------
Confidence            34566777888887654 32  243 3466677777777754 3566663 567777788777765542 2122      


Q ss_pred             ccccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394           92 QGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus        92 ~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~  130 (372)
                       .-.+.+|++|+.+.++.+.-.  +..  ..|.+|.+|.
T Consensus       303 -~~aF~~c~~L~~i~lp~~l~~--I~~--~aF~~C~~L~  336 (379)
T 4h09_A          303 -PRVFMDCVKLSSVTLPTALKT--IQV--YAFKNCKALS  336 (379)
T ss_dssp             -TTTTTTCTTCCEEECCTTCCE--ECT--TTTTTCTTCC
T ss_pred             -hhhhcCCCCCCEEEcCccccE--EHH--HHhhCCCCCC
Confidence             123347777777776644211  111  1566777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.93  E-value=0.23  Score=47.80  Aligned_cols=99  Identities=18%  Similarity=0.313  Sum_probs=65.8

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARIQ   92 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~   92 (372)
                      .|.++..|+.+.+..+...   |. ..+.++++|+.+.+. ++++.|+. .|.++.+|+.+.|..+  +..       +.
T Consensus       260 aF~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~-------I~  326 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQ-------IL  326 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCE-------EC
T ss_pred             eeeecccccEEecccccce---ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccE-------eh
Confidence            4566778888888655432   33 347778889998885 56777774 6788889998887643  221       22


Q ss_pred             cccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394           93 GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus        93 ~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~  130 (372)
                      .-.+.+|++|+.+.++.+.-.  +..  ..|.+|.+|.
T Consensus       327 ~~aF~~C~~L~~i~ip~sv~~--I~~--~aF~~C~~L~  360 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSSVTK--IPE--SAFSNCTALN  360 (394)
T ss_dssp             TTTTTTCTTCCEEEECTTCCB--CCG--GGGTTCTTCC
T ss_pred             HhHhhCCCCCCEEEECcccCE--EhH--hHhhCCCCCC
Confidence            234568999999988765221  222  2788888875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.82  E-value=0.16  Score=48.94  Aligned_cols=57  Identities=18%  Similarity=0.090  Sum_probs=29.4

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLE   76 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~   76 (372)
                      .+..+..|+.+.+....+.    ...+..+.+|+.+.+..+ ++.|+. .|.++.+|+.++|.
T Consensus       271 ~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             ccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            3445555665555443321    123455566666666433 555542 45566666666553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.94  E-value=0.47  Score=45.05  Aligned_cols=100  Identities=16%  Similarity=0.239  Sum_probs=60.3

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQ   92 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~   92 (372)
                      .+.....|+.+.+..+ +.  .++ ..+..+..|+.+.+..+ ++.|+ ..+..+.+|+.+.+..+  +..       +.
T Consensus       212 ~f~~~~~l~~i~~~~~-~~--~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~-------i~  278 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VT--TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKT-------VP  278 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CC--EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSE-------EC
T ss_pred             ccccccccceeeeccc-ee--EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--cee-------cc
Confidence            3455667777777544 21  133 34667788888888655 66665 35667778888777543  221       22


Q ss_pred             cccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394           93 GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus        93 ~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~  130 (372)
                      .-.+.+|++|+.+.++.+.+.. +..  ..|.+|.+|.
T Consensus       279 ~~aF~~c~~L~~i~l~~~~i~~-I~~--~aF~~c~~L~  313 (379)
T 4h09_A          279 YLLCSGCSNLTKVVMDNSAIET-LEP--RVFMDCVKLS  313 (379)
T ss_dssp             TTTTTTCTTCCEEEECCTTCCE-ECT--TTTTTCTTCC
T ss_pred             ccccccccccccccccccccce-ehh--hhhcCCCCCC
Confidence            2234588888888877654432 111  2677887775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.31  E-value=0.071  Score=47.13  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             cCCCCCCEEeecCC-CCCCC---CCCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEcccccc
Q 017394           17 SGLCSLTKLDISYC-DLGEG---AIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        17 ~~L~~L~~L~Ls~n-~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      .+-+.|+.|+|++| .+.+.   .|-..+..-+.|+.|+|++|.+.     .|-..+..=+.|+.|+|+.|.+
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            34567888888875 66310   13344556678888888888877     3445566667888888888874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=89.70  E-value=0.53  Score=45.18  Aligned_cols=98  Identities=19%  Similarity=0.238  Sum_probs=70.9

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQ   92 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~   92 (372)
                      .+..+.+|+.+.+..+ +.  .|+. .|.++++|+.++|.. +++.|+ ..|.++.+|+.+.+..+  +..|+       
T Consensus       292 ~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~-------  358 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIG-------  358 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEEC-------
T ss_pred             cccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEeh-------
Confidence            4667889999999765 42  3544 588899999999974 488887 57889999999988654  22222       


Q ss_pred             cccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394           93 GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA  130 (372)
Q Consensus        93 ~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~  130 (372)
                      .-.+.+|++|+.+.++.+.-..     ...|.+|.+|.
T Consensus       359 ~~aF~~C~~L~~i~lp~~~~~~-----~~~F~~c~~L~  391 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKRLEQY-----RYDFEDTTKFK  391 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGGGGGG-----GGGBCTTCEEE
T ss_pred             HHHhhCCCCCCEEEECCCCEEh-----hheecCCCCCc
Confidence            2245699999999987653222     23789998875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.06  E-value=0.95  Score=43.36  Aligned_cols=84  Identities=13%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             cccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394           15 SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQ   92 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~   92 (372)
                      .+.+++.|+.+.+.. .+.  .|+. .|.++.+|+.++|..+ ++.|. ..|.++.+|+.+.|..+  +.       .+.
T Consensus       283 aF~~c~~L~~i~l~~-~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~-------~I~  349 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RIT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VT-------KIP  349 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CC-------BCC
T ss_pred             ccccccccccccCCC-ccc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cC-------EEh
Confidence            466788999999963 453  3654 5888999999999754 77776 47889999999988643  22       233


Q ss_pred             cccccCCcccccccCcCcc
Q 017394           93 GISLDGCVSLETLSDVLNL  111 (372)
Q Consensus        93 ~L~~~~c~sL~~l~~~~n~  111 (372)
                      .-.+.+|++|+.+.++.+.
T Consensus       350 ~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCH
T ss_pred             HhHhhCCCCCCEEEECCce
Confidence            3345699999999987654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.90  E-value=0.42  Score=42.10  Aligned_cols=78  Identities=17%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             CcccCC-CCCCc----CCccccCCCCCCEEeecCCCCCC---CCCCcccCCCCCCCEEeccCCCCc-----ccchhhhcC
Q 017394            1 MPWSSD-PVALS----LSSSLSGLCSLTKLDISYCDLGE---GAIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRL   67 (372)
Q Consensus         1 L~Ls~N-~i~~~----lP~si~~L~~L~~L~Ls~n~l~~---~~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L   67 (372)
                      |+|++| .|...    +-..+..-+.|+.|+|++|.+.+   ..|-..+..=+.|+.|+|+.|.|.     .|-..+..=
T Consensus        46 L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N  125 (197)
T 1pgv_A           46 VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT  125 (197)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTT
T ss_pred             EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhC
Confidence            456654 54321    23345555778888888888742   123333445577888888888877     233345555


Q ss_pred             CCCcEEEcccc
Q 017394           68 SSLRGIKLEEC   78 (372)
Q Consensus        68 ~~L~~L~L~~n   78 (372)
                      ..|+.|+|++|
T Consensus       126 ~tL~~L~L~n~  136 (197)
T 1pgv_A          126 QSIVEFKADNQ  136 (197)
T ss_dssp             CCCSEEECCCC
T ss_pred             CceeEEECCCC
Confidence            66888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
           +S  S +S L  L +L  +   + +    SS+ +L ++  L    N    L   +  L+ 
Sbjct: 319 ISDISPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP-LANLTR 374

Query: 70  LRGIKLEE 77
           +  + L +
Sbjct: 375 ITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 10  LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN 55
           +S  SSL+ L ++  L   +  +     P  + +L  + +L L+  
Sbjct: 341 VSDVSSLANLTNINWLSAGHNQI-SDLTP--LANLTRITQLGLNDQ 383

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 19  LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEEC 78
             SL +L++S   L E  +P+       LE L  S N+   +        +L+ + +E  
Sbjct: 283 PPSLEELNVSNNKLIE--LPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYN 334

Query: 79  KMLQNLPRLPARIQGISLD 97
             L+  P +P  ++ + ++
Sbjct: 335 P-LREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 12  LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLR 71
           L    +    L +L  S+  L E  +P       +L++LH+  N           +  LR
Sbjct: 296 LIELPALPPRLERLIASFNHLAE--VPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 44  LCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLE 103
             SLEEL++S N  + L A   RL  L          L  +P LP  ++ + ++    L 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLI---ASFNH-LAEVPELPQNLKQLHVEYN-PLR 337

Query: 104 TLSDVL 109
              D+ 
Sbjct: 338 EFPDIP 343

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 26  DISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLP 85
           D+    +  G +P  +  L  L  L++S NN    +     L           K L   P
Sbjct: 250 DLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 86  RLPA 89
            LPA
Sbjct: 309 -LPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF 57
           +L   L+ L  L  L++S+ +L  G IP   G+L   +    + N  
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNL-CGEIP-QGGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 11 SLSSSLSGLCSLTKLDISYCDLGE---GAIPSSIGDLCSLEELHLSGNNF 57
            +  L  L     + +  C L E     I S++    +L EL+L  N  
Sbjct: 18 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 5   SDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDL----CSLEELHLSGNNF 57
           SD    SL+++L    SL +LD+S   LG+  I   +  +    C LE+L L    +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 1/116 (0%)

Query: 12  LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSL 70
             +       +  +D+S   +    +   +     L+ L L G      ++ ++ + S+L
Sbjct: 38  PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

Query: 71  RGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDC 126
             + L  C                 LD               +  + ++       
Sbjct: 98  VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 17/165 (10%), Positives = 38/165 (23%), Gaps = 3/165 (1%)

Query: 11  SLSSSLSGLCSLTKLDISYCDLGE---GAIPSSIGDLCSLEELHLSGNNFVTLLASIYRL 67
           S+ + L    S+ ++ +S   +G      +  +I     LE    S      +   I   
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 68  SSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCL 127
             L    L +C  L  +          + +  +   +    L         +       +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 128 KLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNN 172
             A          K              +     +        + 
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 15  SLSGLCSLTKLDISYCDLGE---GAIPSSIGD-LCSLEELHLSGNNFVTLLASIYRLSSL 70
           S      L  L + Y ++       + + I + +  L  L L+GN F      +  +  +
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 10 LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSS 69
          +  ++  +      +LD+    +    I +    L   + +  S N     L     L  
Sbjct: 8  IEQAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LDGFPLLRR 64

Query: 70 LRGIKLEECKMLQNLP 85
          L+ + +   ++ +   
Sbjct: 65 LKTLLVNNNRICRIGE 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.44
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.08
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.31
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.19
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	82.57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.44  E-value=3.3e-14  Score=132.88  Aligned_cols=105  Identities=22%  Similarity=0.201  Sum_probs=83.7

Q ss_pred             CcccCCCCCC--cCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCcc-cchhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFVT-LLASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-lP~~i~~L~~L~~L~L~   76 (372)
                      |+|++|.+.+  .+|+++++|++|++|+|++ |++. |.+|..|++|++|++|+|++|+|.. .|..+..+.+|++++++
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~-g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccc-cccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            5889999988  5899999999999999997 7887 8999999999999999999999994 55668888899999999


Q ss_pred             ccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           77 ECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        77 ~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +|...+.+|.   .+.     +++.|+.+.+..|.+.+
T Consensus       134 ~N~~~~~~p~---~l~-----~l~~L~~l~l~~n~l~~  163 (313)
T d1ogqa_         134 YNALSGTLPP---SIS-----SLPNLVGITFDGNRISG  163 (313)
T ss_dssp             SSEEESCCCG---GGG-----GCTTCCEEECCSSCCEE
T ss_pred             cccccccCch---hhc-----cCcccceeecccccccc
Confidence            9887765553   333     44555555555554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=7.2e-14  Score=130.50  Aligned_cols=175  Identities=18%  Similarity=0.209  Sum_probs=116.5

Q ss_pred             CcccC-CCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394            1 MPWSS-DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~-N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++ |++.|.+|++|++|++|++|+|++|++. +..|..+..+.+|+.++++.|++. .+|..+..+++|+.+++++|
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccchhhhcccccc-ccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            57876 8999999999999999999999999998 778888999999999999999888 88999999999999999999


Q ss_pred             ccccCCCCCCcc----cccccccCC------------cccccccCcCccCCCCCCccccccccc-------ccccccchH
Q 017394           79 KMLQNLPRLPAR----IQGISLDGC------------VSLETLSDVLNLNEHQIPNIHVHCVDC-------LKLAGNYDL  135 (372)
Q Consensus        79 ~~l~~lP~lp~~----l~~L~~~~c------------~sL~~l~~~~n~l~~~~~~l~~~~~nc-------~kL~~~~~~  135 (372)
                      .+.+.+|.....    +..+++...            ..+..+.+..+...+..+.....+.+.       ..+.+..+ 
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-  238 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-  238 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            988877753222    222222211            111223333333332222211111111       11222222 


Q ss_pred             HHHHHHHHhhcCCCCCCCceeecCCCCCCccccc------ccCCCCeEEEecCC
Q 017394          136 ALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEY------QNNEGSSITISTPP  183 (372)
Q Consensus       136 ~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~------~~~~g~slt~~Lp~  183 (372)
                      .+..+.. ++.+.++.|.+.+     .||++|..      ...++|.++|.+|.
T Consensus       239 ~~~~~~~-L~~L~Ls~N~l~g-----~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         239 KVGLSKN-LNGLDLRNNRIYG-----TLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GCCCCTT-CCEEECCSSCCEE-----CCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccc-cccccCccCeecc-----cCChHHhCCCCCCEEECcCCcccccCCC
Confidence            2222232 6677788888877     45666554      23378889998886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.4e-12  Score=106.39  Aligned_cols=102  Identities=23%  Similarity=0.259  Sum_probs=86.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|+++ .+| .+.++++|++|+|++|.+.  .+|..++.+++|+.|++++|.++.+| .+..+++|+.|++++|++
T Consensus         3 L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           3 LHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCCC-CCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCcc
Confidence            689999997 444 4899999999999999995  49999999999999999999999998 599999999999999984


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      . .+|.+ ..+     ..|++|+.+++..|.+..
T Consensus        78 ~-~~~~~-~~l-----~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          78 Q-QSAAI-QPL-----VSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             C-SSSTT-GGG-----GGCTTCCEEECTTSGGGG
T ss_pred             C-CCCCc-hhh-----cCCCCCCEEECCCCcCCc
Confidence            3 34432 123     388999999999987754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=2e-11  Score=106.09  Aligned_cols=78  Identities=18%  Similarity=0.281  Sum_probs=42.3

Q ss_pred             CcccCCCCCCcC-CccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSL-SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~l-P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.|...+ +..|.++++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+|. .|.++++|++|+|++|
T Consensus        34 L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             EEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeeccccccccCHHHHhCCCcccccccCCc
Confidence            355555555433 333455555555666555554 4444455555555666666555555543 3555555566666555


Q ss_pred             c
Q 017394           79 K   79 (372)
Q Consensus        79 ~   79 (372)
                      +
T Consensus       113 ~  113 (192)
T d1w8aa_         113 Q  113 (192)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-11  Score=110.54  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      +.++++++ .+|+.+.  +.|++|+|++|++.  .+| ..|.++++|++|+|++|+|+.+|. +..+++|++|+|++|++
T Consensus        16 ~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~--~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          16 NCDKRNLT-ALPPDLP--KDTTILHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECTTSCCS--EEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC
T ss_pred             EccCCCCC-eeCcCcC--cCCCEEECcCCcCC--CcCHHHhhcccccccccccccccccccc-ccccccccccccccccc
Confidence            44566665 4566553  46778888888875  254 457778888888888888887773 56777888888888774


Q ss_pred             c
Q 017394           81 L   81 (372)
Q Consensus        81 l   81 (372)
                      .
T Consensus        90 ~   90 (266)
T d1p9ag_          90 Q   90 (266)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=4.6e-11  Score=103.78  Aligned_cols=105  Identities=19%  Similarity=0.220  Sum_probs=82.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCC-CcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAI-PSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n   78 (372)
                      ++.+++++. .+|+.+.  +++++|+|++|+|+ +.+ +..+..+++|+.|+|++|++..+| ..+..+++|++|+|++|
T Consensus        13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCc-ccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            367788886 5676654  68999999999997 445 455799999999999999999555 67889999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP  117 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~  117 (372)
                      ++.. +|.  ..+     .++++|++|++..|.++...+
T Consensus        89 ~l~~-l~~--~~F-----~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          89 KIKE-ISN--KMF-----LGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CCCE-ECS--SSS-----TTCTTCCEEECCSSCCCEECT
T ss_pred             cccc-cCH--HHH-----hCCCcccccccCCccccccCH
Confidence            8543 332  122     378899999999998876443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.2e-10  Score=98.89  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=74.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|+|... |..+..+++|+.|+|++|.+.  .++ .+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus        23 L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          23 LDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             EECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             EECCCCCCCcc-CccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccCCCccccccccccccceecccc
Confidence            57888888554 555577888888888888885  364 478888888888888888888765 4578888888888887


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      +. .++.+    .  .+..+++|+++.+..|.+..
T Consensus        99 i~-~~~~l----~--~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          99 LV-ELGDL----D--PLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CC-CGGGG----G--GGGGCTTCCEEECCSSGGGG
T ss_pred             cc-ccccc----c--ccccccccchhhcCCCcccc
Confidence            42 22221    1  12377888888888876643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=1.8e-10  Score=93.50  Aligned_cols=77  Identities=21%  Similarity=0.259  Sum_probs=68.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n   78 (372)
                      |+|++|.+. .+|+.++.+++|+.|++++|.+.  .+| .++.+++|+.|++++|+++.+|  ..+..+++|+.|++++|
T Consensus        25 L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~--~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          25 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             EECCCCccC-cchhhhhhhhccccccccccccc--ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCC
Confidence            689999996 57888999999999999999996  366 4999999999999999999877  46899999999999999


Q ss_pred             ccc
Q 017394           79 KML   81 (372)
Q Consensus        79 ~~l   81 (372)
                      ++.
T Consensus       101 ~i~  103 (124)
T d1dcea3         101 SLC  103 (124)
T ss_dssp             GGG
T ss_pred             cCC
Confidence            854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.95  E-value=9.8e-10  Score=101.31  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA   62 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~   62 (372)
                      |+|++|+|....+..|.++++|+.|++++|.+. ...|..|.++++|+.|++++|+++.+|.
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~~l~~   96 (305)
T d1xkua_          36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE   96 (305)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS
T ss_pred             EECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccCcCcc
Confidence            355666655544445666666666666666664 3334456666666666666666655554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=1.7e-09  Score=99.68  Aligned_cols=109  Identities=18%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |++++|.+.+..|..+.+++.++.|++++|.+. +..|..+.++++|++|+|++|+|+.+|.+|..+++|++|+|++|+ 
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-  253 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-  253 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-
T ss_pred             EECCCCcCCCCChhHhhcccccccccccccccc-ccccccccccccceeeecccccccccccccccccCCCEEECCCCc-
Confidence            356677777777777777777777777777775 444556677777777777777777777777777777777777776 


Q ss_pred             ccCCCCCC-cccccccccCCcccccccCcCccCC
Q 017394           81 LQNLPRLP-ARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~lp-~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      ++.|+.-. ....  ......+|+.+.+..|.++
T Consensus       254 i~~i~~~~f~~~~--~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         254 ISAIGSNDFCPPG--YNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCCCTTSSSCSS--CCTTSCCCSEEECCSSSSC
T ss_pred             cCccChhhccCcc--hhcccCCCCEEECCCCcCc
Confidence            33443210 0000  0124456666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.2e-10  Score=101.93  Aligned_cols=102  Identities=23%  Similarity=0.283  Sum_probs=65.3

Q ss_pred             cCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccccccc
Q 017394            4 SSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQ   82 (372)
Q Consensus         4 s~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~   82 (372)
                      ..|.+....|..+.++++|+.|+|++|.+. ...+..+..+.+|+.+++++|+++.+| ..+..+++|+.|++++|.+.+
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence            345555555677778888888888888775 344455677778888888888888775 456677788888888877432


Q ss_pred             CCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           83 NLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        83 ~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                       +|.  ..+     .++++|+.+.+..|.+..
T Consensus       168 -l~~--~~f-----~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         168 -VPE--RAF-----RGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             -ECT--TTT-----TTCTTCCEEECCSSCCCE
T ss_pred             -cch--hhh-----ccccccchhhhhhccccc
Confidence             221  111     245555555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.9e-09  Score=98.63  Aligned_cols=106  Identities=20%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+....+..+..+.+|+.+++++|++. +..+..+..+++|+.|+|++|+++.+| ..+..+++|++|++++|+
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            467888887777777888888999999999886 333456778888999999999988775 567888899999999888


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ  115 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~  115 (372)
                      +.+..|   ..+.     ++++|++|+++.|.+...
T Consensus       189 l~~i~~---~~f~-----~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         189 VAHVHP---HAFR-----DLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             CCEECT---TTTT-----TCTTCCEEECCSSCCSCC
T ss_pred             ccccCh---hHhh-----hhhhcccccccccccccc
Confidence            665333   2333     677788888888777663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.6e-09  Score=88.28  Aligned_cols=101  Identities=18%  Similarity=0.112  Sum_probs=78.7

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCC-CCCCCCC-cccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCD-LGEGAIP-SSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC   78 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~-l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n   78 (372)
                      +.+++++. ..|..+..+++|+.|+|++|+ +.  .++ ..|.++++|+.|+|++|+|+.|+ ..|..+++|++|+|++|
T Consensus        14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EecCCCCc-cCcccccCccccCeeecCCCcccc--ccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            45556654 457778899999999998775 74  465 46999999999999999999886 56899999999999999


Q ss_pred             ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      ++. .+|   ..+.     ....|+.|.+..|.+..
T Consensus        91 ~l~-~l~---~~~~-----~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          91 ALE-SLS---WKTV-----QGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CCS-CCC---STTT-----CSCCCCEEECCSSCCCC
T ss_pred             CCc-ccC---hhhh-----ccccccccccCCCcccC
Confidence            954 344   3332     33468899999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.2e-08  Score=85.75  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=61.1

Q ss_pred             CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCcccch-hhhcCCCCcEEEccccccccCCCCCCccccccc
Q 017394           18 GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARIQGIS   95 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~   95 (372)
                      .......++.+++++.  .+|..+..+++|+.|+|.+| .++.+|. .|..+++|+.|+|++|++. .|+.  .     .
T Consensus         6 ~c~~~~~l~c~~~~~~--~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~--~-----~   75 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP--D-----A   75 (156)
T ss_dssp             CCSSSSCEECCSSCCC--TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECT--T-----G
T ss_pred             CcCCCCeEEecCCCCc--cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Cccc--c-----c
Confidence            3344566788888774  37888888888888888766 4787764 5788888888888888743 2321  1     1


Q ss_pred             ccCCcccccccCcCccCCC
Q 017394           96 LDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        96 ~~~c~sL~~l~~~~n~l~~  114 (372)
                      +.++++|++|+++.|.++.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALES   94 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSC
T ss_pred             ccccccccceeccCCCCcc
Confidence            2367788888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.8e-08  Score=91.33  Aligned_cols=103  Identities=23%  Similarity=0.202  Sum_probs=73.8

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~   79 (372)
                      |+|++|.+... |+.+.++++|+.|++++|.+. +..+..+..+.+|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus        82 L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCSSC-CCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-ccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            57889988654 567888999999999999886 4445567778888888888888887764 45667888888888887


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      +.+..+.   .+     ..+++|++|+++.|.++
T Consensus       160 l~~~~~~---~~-----~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         160 LTELPAG---LL-----NGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CSCCCTT---TT-----TTCTTCCEEECCSSCCC
T ss_pred             ccccCcc---cc-----ccccccceeecccCCCc
Confidence            5432221   12     25666777777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=1.8e-08  Score=87.47  Aligned_cols=96  Identities=18%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      ++++|.+.. + +.+..+++|++|+|++|++++  +++ ++++++|+.|++++|.+..+| .+..+++|+.|++++|...
T Consensus        46 ~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~  119 (199)
T d2omxa2          46 QADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQIT  119 (199)
T ss_dssp             ECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC
T ss_pred             ECCCCCCCC-c-cccccCCCcCcCccccccccC--ccc-ccCCccccccccccccccccc-ccccccccccccccccccc
Confidence            455555543 2 235556666666666666642  332 556666666666666666555 3556666666666655532


Q ss_pred             cCCCCCCcccccccccCCcccccccCcCccCC
Q 017394           82 QNLPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        82 ~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      . ++         .+.++++|+.+.++.|.+.
T Consensus       120 ~-~~---------~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         120 D-ID---------PLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             C-CG---------GGTTCTTCSEEECCSSCCC
T ss_pred             c-cc---------ccchhhhhHHhhhhhhhhc
Confidence            2 11         1224556666666655443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=2.8e-08  Score=86.17  Aligned_cols=74  Identities=18%  Similarity=0.312  Sum_probs=61.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+..|  ++++++|+.|++++|.+.  .+| .+.++++|+.|++++|.+..++ .+..+++|+.|++++|++
T Consensus        67 L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          67 INFSNNQLTDITP--LKNLTKLVDILMNNNQIA--DIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCC--CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC
T ss_pred             CccccccccCccc--ccCCcccccccccccccc--ccc-cccccccccccccccccccccc-ccchhhhhHHhhhhhhhh
Confidence            5799999876543  899999999999999985  365 4888999999999999888765 578889999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.8e-09  Score=87.78  Aligned_cols=90  Identities=13%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccc
Q 017394           14 SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQG   93 (372)
Q Consensus        14 ~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~   93 (372)
                      +.+.+...|+.|+|++|+++  .||..+..+++|+.|+|++|.++.++ .+..+++|+.|++++|++.. +|   ..+  
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~-l~---~~~--   82 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICR-IG---EGL--   82 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCE-EC---SCH--
T ss_pred             HhccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccC-CC---ccc--
Confidence            34678889999999999995  48877788999999999999999996 68999999999999999543 33   222  


Q ss_pred             ccccCCcccccccCcCccCCC
Q 017394           94 ISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        94 L~~~~c~sL~~l~~~~n~l~~  114 (372)
                        +..+++|++|.+..|.+..
T Consensus        83 --~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          83 --DQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             --HHHCTTCCEEECCSCCCCC
T ss_pred             --cccccccccceeccccccc
Confidence              1267888999998887754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=3.6e-08  Score=86.22  Aligned_cols=74  Identities=23%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |++++|.+... + .+..+++|+.|+|++|.+.+  ++ .++.+++|++|++++|+++.+| .+..+++|+.|++++|..
T Consensus        51 L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          51 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             EECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCC
T ss_pred             EECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC--cc-ccccCccccccccccccccccc-cccccccccccccccccc
Confidence            45677777553 2 37788888888888888863  55 3678888888888888888887 578888888888888874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.62  E-value=7.7e-08  Score=84.08  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=63.1

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.+.+. + .++.+++|+.|++++|++++  +| .+..+++|+.|++++|.+..++ .+..+++|+.+++++|.+
T Consensus        73 L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2          73 LFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             EECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             EeCCCccccCc-c-ccccCccccccccccccccc--cc-cccccccccccccccccccccc-cccccccccccccccccc
Confidence            57899999764 4 37899999999999999963  76 5889999999999999988776 578888888888888874


Q ss_pred             c
Q 017394           81 L   81 (372)
Q Consensus        81 l   81 (372)
                      .
T Consensus       147 ~  147 (210)
T d1h6ta2         147 T  147 (210)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=4.9e-08  Score=91.48  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=71.2

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |++++|.+.+..  .+..+..++.++++.|.+..   +..+..+++|+.|++++|+++.++ .+..+++|+.|++++|++
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~---~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC---CGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCC
T ss_pred             eeccCcccCCCC--cccccccccccccccccccc---ccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCC
Confidence            457777776543  36778888888888888852   334777888888888888888776 378888888888888864


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      . .+|    .+.     +|++|+.|+++.|.++.
T Consensus       342 ~-~l~----~l~-----~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         342 S-DVS----SLA-----NLTNINWLSAGHNQISD  365 (384)
T ss_dssp             C-CCG----GGG-----GCTTCCEEECCSSCCCB
T ss_pred             C-CCh----hHc-----CCCCCCEEECCCCcCCC
Confidence            3 222    233     77888888888887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=4.6e-08  Score=91.64  Aligned_cols=93  Identities=16%  Similarity=0.260  Sum_probs=75.8

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      +++.|.+.+.  ..+..+++++.|+|++|++.+  ++. +..+++|+.|+|++|+++.+| .+..+++|++|++++|++.
T Consensus       291 ~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~--l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLEDI--SPISNLKNLTYLTLYFNNISD--ISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSCC--GGGGGCTTCSEEECCSSCCSC--CGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhcccCeEECCCCCCCC--Ccc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCC
Confidence            4566777653  457889999999999999973  553 889999999999999999988 6999999999999999855


Q ss_pred             cCCCCCCcccccccccCCcccccccCcCc
Q 017394           82 QNLPRLPARIQGISLDGCVSLETLSDVLN  110 (372)
Q Consensus        82 ~~lP~lp~~l~~L~~~~c~sL~~l~~~~n  110 (372)
                      + +   ++ +.     ++++|+.|+++.|
T Consensus       365 ~-l---~~-l~-----~l~~L~~L~L~~N  383 (384)
T d2omza2         365 D-L---TP-LA-----NLTRITQLGLNDQ  383 (384)
T ss_dssp             B-C---GG-GT-----TCTTCSEEECCCE
T ss_pred             C-C---hh-hc-----cCCCCCEeeCCCC
Confidence            3 2   22 33     7889999998776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=2.2e-07  Score=81.65  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=46.9

Q ss_pred             cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394            2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus         2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      ++.+|+|.. ++ .+.+|++|+.|+|++|.+. + ++ .+..+++|++|++++|.++.++ .+..+++|+.+.+++|...
T Consensus        47 ~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~-~-~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~  120 (227)
T d1h6ua2          47 SAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-D-LA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT  120 (227)
T ss_dssp             ECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-C-CG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             ECCCCCCCc-ch-hHhcCCCCcEeecCCceee-c-cc-cccccccccccccccccccccc-ccccccccccccccccccc
Confidence            456666653 33 4666777777777777765 2 33 2666777777777777766665 4666777777777766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.41  E-value=1.4e-09  Score=95.04  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCcc
Q 017394           11 SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPAR   90 (372)
Q Consensus        11 ~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~   90 (372)
                      .+|.++..|++|+.|+|++|++.  .++ .+..+++|+.|+|++|.++.+|..+..+++|+.|++++|++. .++.    
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~-~l~~----  110 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSG----  110 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC-CHHH----
T ss_pred             hhhhHHhcccccceeECcccCCC--Ccc-cccCCccccChhhccccccccccccccccccccccccccccc-cccc----
Confidence            34567888999999999999985  365 488899999999999999988876677778999999998743 2221    


Q ss_pred             cccccccCCcccccccCcCccCC
Q 017394           91 IQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        91 l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      +     .++++|+.|+++.|.++
T Consensus       111 ~-----~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_         111 I-----EKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             H-----HHHHHSSEEEESEEECC
T ss_pred             c-----cccccccccccccchhc
Confidence            2     25566666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.37  E-value=4.1e-07  Score=83.56  Aligned_cols=68  Identities=24%  Similarity=0.323  Sum_probs=40.8

Q ss_pred             CCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccccc
Q 017394           19 LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGIS   95 (372)
Q Consensus        19 L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~   95 (372)
                      +++|++|+|++|++.  .+|..   +++|+.|+|++|+|+.+|..   +.+|++|+|++|+ ++.+|.+|.+++.|.
T Consensus       283 ~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI--ELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS--CCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred             CCCCCEEECCCCccC--ccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeE
Confidence            456666666666664  36643   45666666666666666642   3456666666666 455666666555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.36  E-value=3.1e-07  Score=80.64  Aligned_cols=84  Identities=20%  Similarity=0.264  Sum_probs=44.2

Q ss_pred             ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccccc
Q 017394           16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGIS   95 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~   95 (372)
                      +...+.++.+.++++.+. .  ...+..+++|+.|++++|.+..++ .+.++++|+.|+|++|++. .+|.    +    
T Consensus       125 ~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~-~l~~----l----  191 (227)
T d1h6ua2         125 LAGLSNLQVLYLDLNQIT-N--ISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKIS-DISP----L----  191 (227)
T ss_dssp             GTTCTTCCEEECCSSCCC-C--CGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CCGG----G----
T ss_pred             hccccchhhhhchhhhhc-h--hhhhccccccccccccccccccch-hhcccccceecccCCCccC-CChh----h----
Confidence            445556666666666553 1  223455566666666666655444 2556666666666666532 2221    1    


Q ss_pred             ccCCcccccccCcCccCC
Q 017394           96 LDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        96 ~~~c~sL~~l~~~~n~l~  113 (372)
                       .++++|+.|+++.|.++
T Consensus       192 -~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         192 -ASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             -GGCTTCCEEECTTSCCC
T ss_pred             -cCCCCCCEEECcCCcCC
Confidence             24555555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.31  E-value=4.1e-09  Score=92.07  Aligned_cols=101  Identities=27%  Similarity=0.237  Sum_probs=67.5

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      |+|++|.|.. ++ .+.+|++|+.|+|++|.+.  .+|..+..+++|+.|++++|+++.++ .+..+++|+.|++++|++
T Consensus        53 L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i  127 (198)
T d1m9la_          53 LALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EECSEEEESC-CC-CHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEEC
T ss_pred             eECcccCCCC-cc-cccCCccccChhhcccccc--cccccccccccccccccccccccccc-cccccccccccccccchh
Confidence            4677777753 43 4777788888888888874  36665555667888888888887775 477777888888888764


Q ss_pred             ccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394           81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      .. ++.    +.  .+..+++|+.|.+..|.+.
T Consensus       128 ~~-~~~----~~--~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         128 TN-WGE----ID--KLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CC-HHH----HH--HHTTTTTCSEEEECSSHHH
T ss_pred             cc-ccc----cc--cccCCCccceeecCCCccc
Confidence            21 111    11  1336777777777777553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.31  E-value=1.2e-06  Score=80.34  Aligned_cols=67  Identities=21%  Similarity=0.161  Sum_probs=45.6

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~   79 (372)
                      |||++|+++ .+|+.   +++|+.|+|++|+|+  .+|..+   .+|+.|++++|+++.++.-   .+.|++|++++|.
T Consensus        43 LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~--~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          43 LELNNLGLS-SLPEL---PPHLESLVASCNSLT--ELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             EECTTSCCS-CCCSC---CTTCSEEECCSSCCS--SCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred             EEeCCCCCC-CCCCC---CCCCCEEECCCCCCc--ccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence            688999885 57763   467899999999995  488754   4566666666666655521   1346666666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.2e-07  Score=79.02  Aligned_cols=79  Identities=19%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccC-CCCcccc-hhhhcCCCCcEEEccc
Q 017394            1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSG-NNFVTLL-ASIYRLSSLRGIKLEE   77 (372)
Q Consensus         1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~-N~l~~lP-~~i~~L~~L~~L~L~~   77 (372)
                      |+|++|.|....+..|.++++|++|+|++|.+. ..+|. .+..++.++.|.+.. |++..++ ..+..+++|+.|++++
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~-~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~  112 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN  112 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTC-CEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEES
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhcccccc-ceeeccccccccccccccccccccccccccccccccccccccccch
Confidence            466677765544445667777777777777665 33433 456667777766543 4555333 4466777777777777


Q ss_pred             ccc
Q 017394           78 CKM   80 (372)
Q Consensus        78 n~~   80 (372)
                      |.+
T Consensus       113 ~~l  115 (242)
T d1xwdc1         113 TGI  115 (242)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1e-07  Score=87.20  Aligned_cols=78  Identities=27%  Similarity=0.336  Sum_probs=48.5

Q ss_pred             CcccCCCCCCc-CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCc--ccchhhhcCCCCcEEEcc
Q 017394            1 MPWSSDPVALS-LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFV--TLLASIYRLSSLRGIKLE   76 (372)
Q Consensus         1 L~Ls~N~i~~~-lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~--~lP~~i~~L~~L~~L~L~   76 (372)
                      |||+++.+... ++.-+.++++|+.|+|++|.+. +..+..++.+++|+.|+|+++ .++  .+..-...+++|++|+++
T Consensus        51 LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls  129 (284)
T d2astb2          51 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  129 (284)
T ss_dssp             EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             EECCCCccCHHHHHHHHHhCCCcccccccccCCC-cHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccc
Confidence            35555555433 2333556677777777777765 455666677777777777774 454  344444567777777777


Q ss_pred             ccc
Q 017394           77 ECK   79 (372)
Q Consensus        77 ~n~   79 (372)
                      +|.
T Consensus       130 ~c~  132 (284)
T d2astb2         130 WCF  132 (284)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.1e-05  Score=70.66  Aligned_cols=100  Identities=18%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             ccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcc-cc-hhhhcCCCCcEEEccccc
Q 017394            3 WSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVT-LL-ASIYRLSSLRGIKLEECK   79 (372)
Q Consensus         3 Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~-lP-~~i~~L~~L~~L~L~~n~   79 (372)
                      .+++++. .+|+.+.  +++++|+|++|++.  .+|. .|.++++|++|+|++|.+.. +| ..+..+++++.|.+..+.
T Consensus        15 c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~--~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          15 CQESKVT-EIPSDLP--RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EESCSCS-SCCSCSC--SCCSEEEEESCCCC--EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EeCCCCC-CcCCCCC--CCCCEEECcCCcCC--ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            4455554 6776553  57899999999995  4766 58999999999999999874 54 367889999999887654


Q ss_pred             cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394           80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH  114 (372)
Q Consensus        80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~  114 (372)
                      .+..++.  ..+     .++++|+++.+..+.+..
T Consensus        90 ~l~~~~~--~~~-----~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          90 NLLYINP--EAF-----QNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TCCEECT--TSE-----ECCTTCCEEEEESCCCCS
T ss_pred             ccccccc--ccc-----cccccccccccchhhhcc
Confidence            3332221  222     377888888888776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=6.1e-06  Score=68.88  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=18.2

Q ss_pred             CCCCCCEEeccCCCCccc---chhhhcCCCCcEEEccccc
Q 017394           43 DLCSLEELHLSGNNFVTL---LASIYRLSSLRGIKLEECK   79 (372)
Q Consensus        43 ~L~~L~~L~Ls~N~l~~l---P~~i~~L~~L~~L~L~~n~   79 (372)
                      .+++|++|+|++|+++.+   +..+..+++|+.|+|++|.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~  102 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  102 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc
Confidence            345555555555555533   2234445555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=1.7e-05  Score=65.97  Aligned_cols=91  Identities=16%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             ccCCCCCCEEeecCCCCCCC-CCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCccccc
Q 017394           16 LSGLCSLTKLDISYCDLGEG-AIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARIQG   93 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n~l~~~-~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~   93 (372)
                      ..+++.|++|+|++|+++.- .++..+..+++|+.|+|++|.++.++. ......+|+.|++++|.+.......+. -+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~-y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST-YIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH-HHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh-HHH
Confidence            35689999999999999630 123446789999999999999998885 333455799999999986543322111 111


Q ss_pred             ccccCCcccccccC
Q 017394           94 ISLDGCVSLETLSD  107 (372)
Q Consensus        94 L~~~~c~sL~~l~~  107 (372)
                      ..+..+++|+.|+-
T Consensus       140 ~i~~~~P~L~~LDg  153 (162)
T d1koha1         140 AIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHTTSTTCCEETT
T ss_pred             HHHHHCCCCCEECc
Confidence            12346788888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=1.4e-05  Score=72.45  Aligned_cols=65  Identities=15%  Similarity=0.289  Sum_probs=53.0

Q ss_pred             cCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccccc
Q 017394           17 SGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECKML   81 (372)
Q Consensus        17 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~~l   81 (372)
                      ....+|+.|||++|.+....++..+..+++|++|+|+++.+. ..+..+.++++|++|++++|..+
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~i  108 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  108 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccc
Confidence            345689999999998863335556788999999999999988 77778899999999999998644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=2.8e-05  Score=73.20  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=73.7

Q ss_pred             CcccCCCCCCc-CCccccCCCCCCEEeecCCCCCCC---CCCcccCCCCCCCEEeccCCCCcc-----cchhhhc-CCCC
Q 017394            1 MPWSSDPVALS-LSSSLSGLCSLTKLDISYCDLGEG---AIPSSIGDLCSLEELHLSGNNFVT-----LLASIYR-LSSL   70 (372)
Q Consensus         1 L~Ls~N~i~~~-lP~si~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~-L~~L   70 (372)
                      ||+++|+++.. +..-+..+++|+.|+|++|.+++.   .|+..+..+++|+.|||++|+++.     +...+.. ..+|
T Consensus         7 ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L   86 (460)
T d1z7xw1           7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI   86 (460)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred             EEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCC
Confidence            68999999764 123345678999999999998621   245567889999999999999862     2222322 3479


Q ss_pred             cEEEccccccccC-CCCCCcccccccccCCcccccccCcCccCC
Q 017394           71 RGIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        71 ~~L~L~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      +.|+|++|.+... +..++..+     ..+++|++|.+..|.+.
T Consensus        87 ~~L~L~~n~it~~~~~~l~~~l-----~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          87 QKLSLQNCCLTGAGCGVLSSTL-----RTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHT-----TSCTTCCEEECCSSBCH
T ss_pred             CEEECCCCCccccccccccchh-----hccccccccccccccch
Confidence            9999999985321 01112222     36788888888877653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.79  E-value=5.9e-05  Score=69.61  Aligned_cols=109  Identities=16%  Similarity=0.177  Sum_probs=67.8

Q ss_pred             cccCCCCCC----cCCccccCCCCCCEEeecCCCCCCC----CCCcccCCCCCCCEEeccCCCCc-----ccchhhhcCC
Q 017394            2 PWSSDPVAL----SLSSSLSGLCSLTKLDISYCDLGEG----AIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLS   68 (372)
Q Consensus         2 ~Ls~N~i~~----~lP~si~~L~~L~~L~Ls~n~l~~~----~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~   68 (372)
                      +++.|.+..    .+...+...+.|+.|+|++|.+...    .+...+..+++|+.|+|++|.|+     .+...+..++
T Consensus       164 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            456666542    2333455678899999999988521    12344677889999999999886     2556678889


Q ss_pred             CCcEEEccccccccC-CCCCCcccccccccCCcccccccCcCccCC
Q 017394           69 SLRGIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        69 ~L~~L~L~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      +|+.|+|++|.+... +..+..   .|.-.....|++|+++.|.+.
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~---~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVD---AFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHH---HHHTCSSCCCCEEECCSSCCB
T ss_pred             cchhhhhhcCccCchhhHHHHH---HhhhccCCCCCEEECCCCcCC
Confidence            999999999974321 000100   011112345666666666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00011  Score=68.84  Aligned_cols=80  Identities=18%  Similarity=0.304  Sum_probs=60.0

Q ss_pred             CcccCCCCCC----cCCccccCCCCCCEEeecCCCCCCC---CCCcccC-CCCCCCEEeccCCCCcc-----cchhhhcC
Q 017394            1 MPWSSDPVAL----SLSSSLSGLCSLTKLDISYCDLGEG---AIPSSIG-DLCSLEELHLSGNNFVT-----LLASIYRL   67 (372)
Q Consensus         1 L~Ls~N~i~~----~lP~si~~L~~L~~L~Ls~n~l~~~---~lP~~i~-~L~~L~~L~Ls~N~l~~-----lP~~i~~L   67 (372)
                      |+|++|.++.    .++..+..+++|+.|||++|.+.+.   .+...+. ...+|+.|+|++|+++.     ++..+..+
T Consensus        32 L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~  111 (460)
T d1z7xw1          32 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL  111 (460)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcc
Confidence            5788888763    3455677899999999999998421   1222232 23579999999999873     56678889


Q ss_pred             CCCcEEEcccccc
Q 017394           68 SSLRGIKLEECKM   80 (372)
Q Consensus        68 ~~L~~L~L~~n~~   80 (372)
                      ++|++|+|++|.+
T Consensus       112 ~~L~~L~L~~N~i  124 (460)
T d1z7xw1         112 PTLQELHLSDNLL  124 (460)
T ss_dssp             TTCCEEECCSSBC
T ss_pred             ccccccccccccc
Confidence            9999999999974

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.58  E-value=0.00012  Score=67.41  Aligned_cols=91  Identities=15%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             CCCCCCEEeecCCCCCCCC---CCcccCCCCCCCEEeccCCCCcc------cchhhhcCCCCcEEEccccccccC-CCCC
Q 017394           18 GLCSLTKLDISYCDLGEGA---IPSSIGDLCSLEELHLSGNNFVT------LLASIYRLSSLRGIKLEECKMLQN-LPRL   87 (372)
Q Consensus        18 ~L~~L~~L~Ls~n~l~~~~---lP~~i~~L~~L~~L~Ls~N~l~~------lP~~i~~L~~L~~L~L~~n~~l~~-lP~l   87 (372)
                      ..+.|+.|++++|++....   +...+...+.|+.|+|++|.+..      +...+..+++|+.|+|++|.+... ...+
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            4567888888888775211   23335567788888888888762      334566778888888888874221 0111


Q ss_pred             CcccccccccCCcccccccCcCccCC
Q 017394           88 PARIQGISLDGCVSLETLSDVLNLNE  113 (372)
Q Consensus        88 p~~l~~L~~~~c~sL~~l~~~~n~l~  113 (372)
                      ...     +..|+.|++|+++.|.+.
T Consensus       236 ~~~-----l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         236 AIA-----LKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHH-----GGGCTTCCEEECTTCCCC
T ss_pred             ccc-----ccccccchhhhhhcCccC
Confidence            111     236677777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.58  E-value=0.0015  Score=53.94  Aligned_cols=89  Identities=13%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             CCCCCCEEeecCC-CCCCCC---CCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEccccccccCCCCCC
Q 017394           18 GLCSLTKLDISYC-DLGEGA---IPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECKMLQNLPRLP   88 (372)
Q Consensus        18 ~L~~L~~L~Ls~n-~l~~~~---lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp   88 (372)
                      +.++|+.|+|+++ .+.+..   +-..+...++|+.|+|++|.+.     .+-..+...+.|+.|+|++|.+..      
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~------   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP------   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH------
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch------
Confidence            4578999999875 453111   2234666788999999999887     333456677889999999987432      


Q ss_pred             cccccc--cccCCcccccccCcCccC
Q 017394           89 ARIQGI--SLDGCVSLETLSDVLNLN  112 (372)
Q Consensus        89 ~~l~~L--~~~~c~sL~~l~~~~n~l  112 (372)
                      ..+..|  .+..+++|++|++..|..
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            111111  233678888888776643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.86  E-value=0.0031  Score=51.94  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             CcccCC-CCCCc----CCccccCCCCCCEEeecCCCCCCC---CCCcccCCCCCCCEEeccCCCCcc-----cchhhhcC
Q 017394            1 MPWSSD-PVALS----LSSSLSGLCSLTKLDISYCDLGEG---AIPSSIGDLCSLEELHLSGNNFVT-----LLASIYRL   67 (372)
Q Consensus         1 L~Ls~N-~i~~~----lP~si~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~L   67 (372)
                      |+|+++ .+...    +-..+...++|+.|+|++|.+.+.   .+...+...+.|+.|+|++|.+..     +-..+..-
T Consensus        20 L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n   99 (167)
T d1pgva_          20 VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT   99 (167)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTT
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhC
Confidence            466653 34432    223466778999999999998521   233345567899999999999882     23356677


Q ss_pred             CCCcEEEccccc
Q 017394           68 SSLRGIKLEECK   79 (372)
Q Consensus        68 ~~L~~L~L~~n~   79 (372)
                      +.|+.|+|++|.
T Consensus       100 ~sL~~L~l~~n~  111 (167)
T d1pgva_         100 QSIVEFKADNQR  111 (167)
T ss_dssp             CCCSEEECCCCS
T ss_pred             CcCCEEECCCCc
Confidence            889999999886

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.36  E-value=0.024  Score=45.93  Aligned_cols=65  Identities=8%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             ccCCCCCCEEeecCC-CCCCCC---CCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEcccccc
Q 017394           16 LSGLCSLTKLDISYC-DLGEGA---IPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECKM   80 (372)
Q Consensus        16 i~~L~~L~~L~Ls~n-~l~~~~---lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~~   80 (372)
                      ..+.++|+.|+|+++ .++...   +-..+...++|+.|+|++|.+.     .|-..+...+.|+.|++++|.+
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            346689999999974 564211   2234567889999999999887     2334567788999999998874

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.57  E-value=0.25  Score=39.52  Aligned_cols=91  Identities=12%  Similarity=0.143  Sum_probs=58.5

Q ss_pred             cccCCCCCCEEeecCCCCCCCC---CCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEcccc--ccccC-
Q 017394           15 SLSGLCSLTKLDISYCDLGEGA---IPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEEC--KMLQN-   83 (372)
Q Consensus        15 si~~L~~L~~L~Ls~n~l~~~~---lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n--~~l~~-   83 (372)
                      .+...++|+.|+|++|.+.+..   +-..+...++|+.|++++|.+.     .+-..+...+.|+.++|+.+  .+... 
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            4567889999999999985211   2234566789999999999886     34456778889998777543  32110 


Q ss_pred             CCCCCcccccccccCCcccccccCcCc
Q 017394           84 LPRLPARIQGISLDGCVSLETLSDVLN  110 (372)
Q Consensus        84 lP~lp~~l~~L~~~~c~sL~~l~~~~n  110 (372)
                      ...+...+     ..++.|+.|++..+
T Consensus       121 ~~~La~~L-----~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIANML-----EKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHH-----HHCSSCCEEECCCS
T ss_pred             HHHHHHHH-----HhCCCcCEEeCcCC
Confidence            00111112     26778888876543