Citrus Sinensis ID: 017410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNLTAHGS
cccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHHcccccEEEccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccEEEEEEcccEEEEEccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccc
cHHHHHHHcHHHHcccccccccccccccccccccccHHHccHHHHHHHHHHHHHHccccEEEEccccccccEEEEcHHHHHHHccccEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccEEccccccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEccHHHHHcccccccccccEEEcccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccHEEccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccc
MASGLRRFVGSLSRRNLSTACANKQliqqhdggvgsgksLNLYSAINQALHIAletdprayvfgedvgfggvfrcttgladrfgksrvfntplceqGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRyrsgnqfncggltvrapygavghgghyhsqspeaffchvpglkvviprsprqaKGLLLscirdpnpvvffepkwlyrlsveevpeddymlplseaeviregsditlvGWGAQLSIMEQACLDAEKEgiscelidlktlipwdkeTVEASVRKTGRLLisheapvtggfgAEISASILERCFLRleapvarvcgldtpfplvfepfymptknkasclesfkvpaqhccmnltahgs
masglrrfVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLlscirdpnpvvFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIdlktlipwdkETVEASVRKTgrllisheapvtggfGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNLTAHGS
MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYvfgedvgfggvfRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNLTAHGS
*******************ACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNL*****
*****************************************LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNLTA***
MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNLTAHGS
*************************************KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNL*****
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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFKVPAQHCCMNLTAHGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query372 2.2.26 [Sep-21-2011]
Q55FN7370 2-oxoisovalerate dehydrog yes no 0.862 0.867 0.679 1e-132
P35738390 2-oxoisovalerate dehydrog yes no 0.862 0.823 0.672 1e-130
Q6P3A8390 2-oxoisovalerate dehydrog yes no 0.862 0.823 0.672 1e-129
P21839392 2-oxoisovalerate dehydrog yes no 0.862 0.818 0.663 1e-129
P21953392 2-oxoisovalerate dehydrog yes no 0.862 0.818 0.666 1e-129
Q5SLR3324 2-oxoisovalerate dehydrog no no 0.830 0.953 0.514 4e-82
Q72GU2324 2-oxoisovalerate dehydrog no no 0.830 0.953 0.511 4e-81
Q9I1M1350 2-oxoisovalerate dehydrog yes no 0.814 0.865 0.459 6e-78
P37941327 2-oxoisovalerate dehydrog yes no 0.844 0.960 0.470 6e-78
P09061339 2-oxoisovalerate dehydrog yes no 0.825 0.905 0.445 1e-74
>sp|Q55FN7|ODBB_DICDI 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1 Back     alignment and function desciption
 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 220/324 (67%), Positives = 264/324 (81%), Gaps = 3/324 (0%)

Query: 35  GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
           G  + +NL+ AIN  + IA++ D +A VFGEDVGFGGVFRCT GL D++G SRVFNTPLC
Sbjct: 44  GEKQKMNLFQAINNGMDIAMQKDSKAVVFGEDVGFGGVFRCTVGLRDKYGASRVFNTPLC 103

Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           EQGI GFAIGLAA G   IAEIQFADYIFPAFDQIVNEAAK+RYRSG QF+CG LT+R+P
Sbjct: 104 EQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSP 163

Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
           YGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+FFEPK +YR
Sbjct: 164 YGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYR 223

Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC-LDAEKEGISCELIDLK 273
            +VEEVP  DY +PL +A +++EG DIT++GWGAQ+ ++ QA  +  EK GISCELIDL+
Sbjct: 224 SAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEKLGISCELIDLR 283

Query: 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT 333
           T+ PWD ETV  SV+KTGR++ISHEAP TGG+ AEISA+I ERCFL LEAP+ RVCG DT
Sbjct: 284 TIQPWDVETVVESVKKTGRVVISHEAPKTGGWAAEISATIQERCFLHLEAPIQRVCGYDT 343

Query: 334 PFPLVFEPFYMPTKNKASCLESFK 357
           PFPL+FE FY+P   K    ES K
Sbjct: 344 PFPLIFEKFYVPDHLKN--FESIK 365
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4
>sp|P35738|ODBB_RAT 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3 Back     alignment and function description
>sp|Q6P3A8|ODBB_MOUSE 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2 Back     alignment and function description
>sp|P21839|ODBB_BOVIN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2 Back     alignment and function description
>sp|P21953|ODBB_HUMAN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2 Back     alignment and function description
>sp|Q5SLR3|ODBB_THET8 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1 Back     alignment and function description
>sp|Q72GU2|ODBB_THET2 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1 Back     alignment and function description
>sp|Q9I1M1|ODBB_PSEAE 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=bkdA2 PE=3 SV=1 Back     alignment and function description
>sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis (strain 168) GN=bfmBAB PE=1 SV=1 Back     alignment and function description
>sp|P09061|ODBB_PSEPU 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
357469283358 2-oxoisovalerate dehydrogenase subunit b 0.911 0.946 0.893 1e-180
388511999358 unknown [Medicago truncatula] 0.911 0.946 0.890 1e-180
224075962368 predicted protein [Populus trichocarpa] 0.938 0.948 0.864 1e-179
449452632356 PREDICTED: 2-oxoisovalerate dehydrogenas 0.951 0.994 0.843 1e-178
297834170360 hypothetical protein ARALYDRAFT_478729 [ 0.935 0.966 0.857 1e-177
356504362358 PREDICTED: 2-oxoisovalerate dehydrogenas 0.897 0.932 0.884 1e-176
358248148356 uncharacterized protein LOC100802853 [Gl 0.892 0.932 0.887 1e-176
255564812365 2-oxoisovalerate dehydrogenase, putative 0.938 0.956 0.847 1e-175
15231242358 2-oxoisovalerate dehydrogenase E1 compon 0.844 0.877 0.929 1e-175
297847914352 BCDH BETA1 [Arabidopsis lyrata subsp. ly 0.844 0.892 0.923 1e-175
>gi|357469283|ref|XP_003604926.1| 2-oxoisovalerate dehydrogenase subunit beta [Medicago truncatula] gi|355505981|gb|AES87123.1| 2-oxoisovalerate dehydrogenase subunit beta [Medicago truncatula] Back     alignment and taxonomy information
 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/346 (89%), Positives = 324/346 (93%), Gaps = 7/346 (2%)

Query: 5   LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSG-KSLNLYSAINQALHIALETDPRAYVF 63
           L ++V  +SRR LST+      I Q D    +G KSLNLYSA+NQALHIAL+TDPRAYVF
Sbjct: 8   LGKWVSLVSRRGLSTS------IVQKDAAAENGVKSLNLYSAVNQALHIALDTDPRAYVF 61

Query: 64  GEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123
           GEDVGFGGVFRCTTGLADRFGK RVFNTPLCEQGIVGF IGLAAMGNRAIAEIQFADYIF
Sbjct: 62  GEDVGFGGVFRCTTGLADRFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIF 121

Query: 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVI 183
           PAFDQIVNEAAKFRYRSGNQFNCGGLT+R PYGAVGHGGHYHSQSPEAFFCHVPG+KVVI
Sbjct: 122 PAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVI 181

Query: 184 PRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITL 243
           PRSP++AKGLLLSCIRDPNP+VFFEPKWLYRL+VEEVPE DYMLPLSEAEVIREGSDITL
Sbjct: 182 PRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEGDYMLPLSEAEVIREGSDITL 241

Query: 244 VGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTG 303
           VGWGAQLSIMEQAC+DAEKEGISCELIDLKTLIPWDKETVEASV+KTGRLLISHEAPVTG
Sbjct: 242 VGWGAQLSIMEQACVDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLISHEAPVTG 301

Query: 304 GFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNK 349
           GFGAEISASILERCF RLEAPVARVCGLDTPFPLVFEPFYMPTKNK
Sbjct: 302 GFGAEISASILERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNK 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388511999|gb|AFK44061.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224075962|ref|XP_002304849.1| predicted protein [Populus trichocarpa] gi|222842281|gb|EEE79828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452632|ref|XP_004144063.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cucumis sativus] gi|449493568|ref|XP_004159353.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834170|ref|XP_002884967.1| hypothetical protein ARALYDRAFT_478729 [Arabidopsis lyrata subsp. lyrata] gi|297330807|gb|EFH61226.1| hypothetical protein ARALYDRAFT_478729 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356504362|ref|XP_003520965.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|358248148|ref|NP_001239825.1| uncharacterized protein LOC100802853 [Glycine max] gi|255641168|gb|ACU20861.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255564812|ref|XP_002523400.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223537350|gb|EEF38979.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15231242|ref|NP_187954.1| 2-oxoisovalerate dehydrogenase E1 component, beta subunit [Arabidopsis thaliana] gi|7021286|gb|AAF35281.1|AF145452_1 branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|9280297|dbj|BAB01752.1| branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|90093294|gb|ABD85160.1| At3g13450 [Arabidopsis thaliana] gi|110738414|dbj|BAF01133.1| branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|332641836|gb|AEE75357.1| 2-oxoisovalerate dehydrogenase E1 component, beta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847914|ref|XP_002891838.1| BCDH BETA1 [Arabidopsis lyrata subsp. lyrata] gi|297337680|gb|EFH68097.1| BCDH BETA1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
TAIR|locus:2193889352 BCDH BETA1 "branched-chain alp 0.844 0.892 0.885 8.2e-154
TAIR|locus:2092835358 DIN4 "DARK INDUCIBLE 4" [Arabi 0.844 0.877 0.891 1.7e-153
ZFIN|ZDB-GENE-030124-2391 bckdhb "branched chain ketoaci 0.862 0.820 0.651 1.2e-113
UNIPROTKB|F1NK15392 BCKDHB "Uncharacterized protei 0.860 0.816 0.640 3.2e-113
MGI|MGI:88137390 Bckdhb "branched chain ketoaci 0.862 0.823 0.641 1.4e-112
RGD|2197390 Bckdhb "branched chain keto ac 0.862 0.823 0.641 1.4e-112
UNIPROTKB|P35738390 Bckdhb "2-oxoisovalerate dehyd 0.862 0.823 0.641 1.4e-112
UNIPROTKB|E2QYD3387 BCKDHB "Uncharacterized protei 0.862 0.829 0.641 1.8e-112
DICTYBASE|DDB_G0268020370 bkdB "branched-chain alpha-ket 0.862 0.867 0.641 3.6e-112
UNIPROTKB|P21839392 BCKDHB "2-oxoisovalerate dehyd 0.862 0.818 0.632 3.6e-112
TAIR|locus:2193889 BCDH BETA1 "branched-chain alpha-keto acid decarboxylase E1 beta subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
 Identities = 278/314 (88%), Positives = 297/314 (94%)

Query:    36 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCE 95
             +GK LNLYSAINQALHIAL+TDPR+Y            RCTTGLA+RFGK+RVFNTPLCE
Sbjct:    28 TGKPLNLYSAINQALHIALDTDPRSYVFGEDVGFGGVFRCTTGLAERFGKNRVFNTPLCE 87

Query:    96 QGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155
             QGIVGF IGLAAMGNRAI EIQFADYI+PAFDQIVNEAAKFRYRSGNQFNCGGLT+RAPY
Sbjct:    88 QGIVGFGIGLAAMGNRAIVEIQFADYIYPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPY 147

Query:   156 GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215
             GAVGHGGHYHSQSPEAFFCHVPG+KVVIPRSPR+AKGLLLSCIRDPNPVVFFEPKWLYR 
Sbjct:   148 GAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSCIRDPNPVVFFEPKWLYRQ 207

Query:   216 SVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275
             +VEEVPE DYM+PLSEAEVIREG+DITLVGWGAQL++MEQACLDAEKEGISCELIDLKTL
Sbjct:   208 AVEEVPEHDYMIPLSEAEVIREGNDITLVGWGAQLTVMEQACLDAEKEGISCELIDLKTL 267

Query:   276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF 335
             +PWDKETVEASV+KTGRLLISHEAPVTGGFGAEISA+ILERCFL+LEAPV+RVCGLDTPF
Sbjct:   268 LPWDKETVEASVKKTGRLLISHEAPVTGGFGAEISATILERCFLKLEAPVSRVCGLDTPF 327

Query:   336 PLVFEPFYMPTKNK 349
             PLVFEPFYMPTKNK
Sbjct:   328 PLVFEPFYMPTKNK 341
GO:0003824 "catalytic activity" evidence=IEA
GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
TAIR|locus:2092835 DIN4 "DARK INDUCIBLE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030124-2 bckdhb "branched chain ketoacid dehydrogenase E1, beta polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK15 BCKDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:88137 Bckdhb "branched chain ketoacid dehydrogenase E1, beta polypeptide" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2197 Bckdhb "branched chain keto acid dehydrogenase E1, beta polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P35738 Bckdhb "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYD3 BCKDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268020 bkdB "branched-chain alpha-keto acid dehydrogenase E1 beta chain" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P21839 BCKDHB "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P37941ODBB_BACSU1, ., 2, ., 4, ., 40.47040.84400.9602yesno
P09061ODBB_PSEPU1, ., 2, ., 4, ., 40.44510.82520.9056yesno
Q68XA8ODPB_RICTY1, ., 2, ., 4, ., 10.38140.82520.9417yesno
P35488ODPB_ACHLA1, ., 2, ., 4, ., 10.44440.83870.9541yesno
P47515ODPB_MYCGE1, ., 2, ., 4, ., 10.41580.80910.9233yesno
P32473ODPB_YEAST1, ., 2, ., 4, ., 10.37420.82790.8415yesno
Q6ABX8ODPB_LEIXX1, ., 2, ., 4, ., 10.42720.82790.9139yesno
Q6P3A8ODBB_MOUSE1, ., 2, ., 4, ., 40.67280.86290.8230yesno
Q1RJX3ODPB_RICBR1, ., 2, ., 4, ., 10.35970.84130.9630yesno
O06160BKDB_MYCTU1, ., 2, ., 4, ., 40.42760.83600.8936yesno
Q9I1M1ODBB_PSEAE1, ., 2, ., 4, ., 40.45980.81450.8657yesno
P35738ODBB_RAT1, ., 2, ., 4, ., 40.67280.86290.8230yesno
P21839ODBB_BOVIN1, ., 2, ., 4, ., 40.66350.86290.8188yesno
P21953ODBB_HUMAN1, ., 2, ., 4, ., 40.66660.86290.8188yesno
Q4UKQ7ODPB_RICFE1, ., 2, ., 4, ., 10.37610.84940.9693yesno
Q92IS2ODPB_RICCN1, ., 2, ., 4, ., 10.37300.84940.9693yesno
Q9ZDR3ODPB_RICPR1, ., 2, ., 4, ., 10.38140.82520.9417yesno
Q55FN7ODBB_DICDI1, ., 2, ., 4, ., 40.67900.86290.8675yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
PTZ00182355 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro 0.0
COG0022324 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena 1e-165
cd07036167 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY 1e-97
PRK09212327 PRK09212, PRK09212, pyruvate dehydrogenase subunit 3e-94
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 1e-83
PLN02683356 PLN02683, PLN02683, pyruvate dehydrogenase E1 comp 7e-81
CHL00144327 CHL00144, odpB, pyruvate dehydrogenase E1 componen 4e-80
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 2e-44
pfam02780124 pfam02780, Transketolase_C, Transketolase, C-termi 3e-39
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 8e-39
COG3958312 COG3958, COG3958, Transketolase, C-terminal subuni 2e-21
COG1154627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 5e-17
TIGR00204617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 2e-15
PRK12571641 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate 9e-15
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 7e-12
PRK05444580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 4e-11
PLN02225701 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate 1e-08
PLN02582677 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate 5e-07
PLN02234641 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate 2e-05
TIGR00239929 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas 2e-05
cd06586154 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding 1e-04
COG0567906 COG0567, SucA, 2-oxoglutarate dehydrogenase comple 0.003
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information 
 Score =  540 bits (1394), Expect = 0.0
 Identities = 196/318 (61%), Positives = 237/318 (74%), Gaps = 4/318 (1%)

Query: 35  GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPL 93
           G+   +N+  AIN AL   L  DP+ +V GEDV  +GGV++CT GL D++G  RVF+TP+
Sbjct: 30  GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPI 89

Query: 94  CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153
            EQG  GFAIG A  G R IAE  FAD+IFPAFDQIVNEAAK+RY SG QF+C  + +R 
Sbjct: 90  TEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCP-IVIRG 148

Query: 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 213
           P GAVGHGG YHSQS EA+F HVPGLKVV P  P  AKGLL + IRDPNPVVFFEPK LY
Sbjct: 149 PNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLY 208

Query: 214 RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273
           R SVE VPE DY LPL +A+V+REG D+T+VG+G+Q+ +  +A  +  KEGISCE+IDL+
Sbjct: 209 RESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLR 268

Query: 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT 333
           +L PWD+ET+  SV+KTGR +I HEAP T G GAEI+A I+E CFL LEAP+ RVCG DT
Sbjct: 269 SLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADT 328

Query: 334 PFPLV--FEPFYMPTKNK 349
           PFP     EP Y+P K K
Sbjct: 329 PFPYAKNLEPAYLPDKEK 346

Length = 355
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 372
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 100.0
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 100.0
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 100.0
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 100.0
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 100.0
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
KOG0524359 consensus Pyruvate dehydrogenase E1, beta subunit 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
KOG0525362 consensus Branched chain alpha-keto acid dehydroge 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PRK12753663 transketolase; Reviewed 100.0
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PRK05899624 transketolase; Reviewed 100.0
PLN02790654 transketolase 100.0
PTZ00089661 transketolase; Provisional 100.0
KOG0523632 consensus Transketolase [Carbohydrate transport an 100.0
PRK12754663 transketolase; Reviewed 100.0
PRK09405891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
TIGR03186889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 100.0
PRK13012896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 100.0
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 100.0
COG0021663 TktA Transketolase [Carbohydrate transport and met 100.0
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.97
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 99.9
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 99.89
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 99.89
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.89
PF02780124 Transketolase_C: Transketolase, C-terminal domain; 99.88
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 99.85
PRK08366390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 99.84
PRK09622407 porA pyruvate flavodoxin oxidoreductase subunit al 99.83
PRK05261785 putative phosphoketolase; Provisional 99.81
PRK08367394 porA pyruvate ferredoxin oxidoreductase subunit al 99.79
COG4231 640 Indolepyruvate ferredoxin oxidoreductase, alpha an 99.73
TIGR00759885 aceE pyruvate dehydrogenase E1 component, homodime 99.68
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 99.64
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 99.58
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 99.5
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 99.5
KOG0451913 consensus Predicted 2-oxoglutarate dehydrogenase, 99.49
COG2609887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.46
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 99.45
KOG04501017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 99.39
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 99.37
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 99.36
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 99.31
COG3957793 Phosphoketolase [Carbohydrate transport and metabo 98.66
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 98.61
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 97.62
PF03894179 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate 97.55
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 97.19
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.63
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 95.92
PRK08199 557 thiamine pyrophosphate protein; Validated 95.78
PRK08322 547 acetolactate synthase; Reviewed 95.77
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 95.73
PRK07586 514 hypothetical protein; Validated 95.5
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 95.48
PRK12474 518 hypothetical protein; Provisional 95.34
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 95.31
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 95.31
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 95.15
PRK07092 530 benzoylformate decarboxylase; Reviewed 95.1
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 95.01
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 94.98
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 94.93
PRK07524 535 hypothetical protein; Provisional 94.88
PRK08611 576 pyruvate oxidase; Provisional 94.85
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 94.75
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 94.73
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 94.53
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 94.48
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 94.43
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 94.37
PRK06457 549 pyruvate dehydrogenase; Provisional 94.2
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 93.96
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 93.92
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 93.82
PRK08155 564 acetolactate synthase catalytic subunit; Validated 93.81
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 93.78
PRK08617 552 acetolactate synthase; Reviewed 93.67
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 93.65
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 93.63
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 93.44
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 93.38
PRK08266 542 hypothetical protein; Provisional 93.17
PLN02470 585 acetolactate synthase 93.15
PRK07064 544 hypothetical protein; Provisional 92.82
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 92.77
PLN02573 578 pyruvate decarboxylase 92.61
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 92.5
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 92.34
PRK05858 542 hypothetical protein; Provisional 92.16
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 92.14
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 92.13
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 92.04
PRK11269 591 glyoxylate carboligase; Provisional 91.78
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 91.78
PRK06154 565 hypothetical protein; Provisional 91.61
PRK06112 578 acetolactate synthase catalytic subunit; Validated 91.3
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 91.3
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 91.04
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 90.78
PRK08273 597 thiamine pyrophosphate protein; Provisional 90.62
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 90.61
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 90.56
PRK06546 578 pyruvate dehydrogenase; Provisional 90.5
PRK09124 574 pyruvate dehydrogenase; Provisional 90.25
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 89.99
PRK08327 569 acetolactate synthase catalytic subunit; Validated 89.91
PF09363203 XFP_C: XFP C-terminal domain; InterPro: IPR018969 89.64
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 89.01
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 88.76
TIGR03393 539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 88.35
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 87.92
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 87.65
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 87.45
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 87.25
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 86.94
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 86.87
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 86.78
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 85.53
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 85.3
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 85.21
COG0075 383 Serine-pyruvate aminotransferase/archaeal aspartat 84.33
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 84.19
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 83.42
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 83.4
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 83.4
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 82.38
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 82.37
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 80.17
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 80.11
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-72  Score=522.60  Aligned_cols=316  Identities=55%  Similarity=0.911  Sum_probs=300.7

Q ss_pred             cccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 017410           39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ  117 (372)
Q Consensus        39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~  117 (372)
                      ++++++|++++|.+.|++|++|+++|+|++ +||+|+++++|.++||++|++|++|+|.+++|+|.|||+.|+||++++|
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq   80 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ   80 (324)
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence            368999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 017410          118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC  197 (372)
Q Consensus       118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a  197 (372)
                      |.+|+..++|||.|++++.+||++|++++ |+|++++.|..-..+.+|||+.++||.++||++|++|++|.|++.+|+.|
T Consensus        81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~-PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aA  159 (324)
T COG0022          81 FADFIYPAFDQIVNQAAKIRYRSGGQFTV-PIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAA  159 (324)
T ss_pred             ecchhHHHHHHHHHHHHHHhhhcCCceeC-CEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHH
Confidence            99999999999999999999999999999 99999998877668999999999999999999999999999999999999


Q ss_pred             HhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCC
Q 017410          198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP  277 (372)
Q Consensus       198 ~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P  277 (372)
                      ++++.||++++||++||....++|+++|.+|+||+++.|+|+|++||+||.|++.+++|+++|+++||+++|||+|+|+|
T Consensus       160 Ird~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P  239 (324)
T COG0022         160 IRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP  239 (324)
T ss_pred             hcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCc
Confidence            99999999999999999666778889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc--ccccCCCCcHHHH-HHHH
Q 017410          278 WDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL--VFEPFYMPTKNKA-SCLE  354 (372)
Q Consensus       278 ~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~--lle~~~l~~~~~~-~~i~  354 (372)
                      +|.++|.++++||+++++|||.+.++|+|++|++.++|+.|.+|++||.|+++.|.|.|+  .+|++.|+..+.| ++++
T Consensus       240 lD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~  319 (324)
T COG0022         240 LDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK  319 (324)
T ss_pred             cCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999988899999999999998654  5999999876544 4554


Q ss_pred             h
Q 017410          355 S  355 (372)
Q Consensus       355 ~  355 (372)
                      +
T Consensus       320 ~  320 (324)
T COG0022         320 K  320 (324)
T ss_pred             H
Confidence            3

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
1dtw_B342 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 1e-122
2j9f_B350 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 1e-121
1olx_B342 Roles Of His291-alpha And His146-beta' In The Reduc 1e-120
1ik6_A369 3d Structure Of The E1beta Subunit Of Pyruvate Dehy 8e-75
1um9_B324 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 4e-74
2bp7_B339 New Crystal Form Of The Pseudomonas Putida Branched 2e-67
3duf_B325 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 2e-66
1w85_B324 The Crystal Structure Of Pyruvate Dehydrogenase E1 2e-66
1qs0_B338 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 4e-66
2ozl_B341 Human Pyruvate Dehydrogenase S264e Variant Length = 2e-46
3exe_B329 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-46
1ni4_B341 Human Pyruvate Dehydrogenase Length = 341 6e-39
2o1x_A629 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From 7e-09
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342 Back     alignment and structure 
Iteration: 1

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/324 (63%), Positives = 250/324 (77%), Gaps = 3/324 (0%)
Query: 35  GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLC 94
           G  + +NL+ ++  AL  +L  DP A             RCT GL D++GK RVFNTPLC
Sbjct: 16  GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           EQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76  EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
           +G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
            + EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A +  EK G+SCE+IDL+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255
Query: 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT 333
           T+IPWD +T+  SV KTGRLLISHEAP+TGGF +EIS+++ E CFL LEAP++RVCG DT
Sbjct: 256 TIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDT 315
Query: 334 PFPLVFEPFYMPTKNKASCLESFK 357
           PFP +FEPFY+P K K  C ++ +
Sbjct: 316 PFPHIFEPFYIPDKWK--CYDALR 337
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350 Back     alignment and structure
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 Back     alignment and structure
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 Back     alignment and structure
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 Back     alignment and structure
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 Back     alignment and structure
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 Back     alignment and structure
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 Back     alignment and structure
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 Back     alignment and structure
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 Back     alignment and structure
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 Back     alignment and structure
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 0.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 0.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 0.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 0.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 0.0
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 1e-147
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 1e-11
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 1e-11
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 5e-05
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 Back     alignment and structure
 Score =  579 bits (1496), Expect = 0.0
 Identities = 213/316 (67%), Positives = 256/316 (81%), Gaps = 1/316 (0%)

Query: 35  GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
           G  + +NL+ ++  AL  +L  DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 16  GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75

Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           EQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76  EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135

Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
           +G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195

Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC-LDAEKEGISCELIDLK 273
            + EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +   +  EK G+SCE+IDL+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255

Query: 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT 333
           T+IPWD +T+  SV KTGRLLISHEAP+TGGF +EIS+++ E CFL LEAP++RVCG DT
Sbjct: 256 TIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDT 315

Query: 334 PFPLVFEPFYMPTKNK 349
           PFP +FEPFY+P K K
Sbjct: 316 PFPHIFEPFYIPDKWK 331
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Length = 118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 100.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 100.0
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 100.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 100.0
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2qtc_A886 Pyruvate dehydrogenase E1 component; thiamin dipho 100.0
3ahc_A845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 100.0
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 99.94
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.83
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 99.68
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 96.0
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 95.13
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 94.99
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 94.54
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 94.53
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 94.26
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 93.74
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 93.65
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 93.65
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 93.64
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 93.52
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 93.37
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 93.29
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 92.82
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 92.82
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 92.74
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 92.31
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 90.16
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 89.88
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 89.61
1ovm_A 552 Indole-3-pyruvate decarboxylase; thiamine diphosph 88.91
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 88.43
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 84.02
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
Probab=100.00  E-value=7.4e-67  Score=508.95  Aligned_cols=316  Identities=45%  Similarity=0.751  Sum_probs=291.5

Q ss_pred             cccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 017410           39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ  117 (372)
Q Consensus        39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~  117 (372)
                      +++||++|+++|.+++++||+++++++|++ +||+|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+||+++++
T Consensus         2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t   81 (324)
T 1w85_B            2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ   81 (324)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred             cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence            468999999999999999999999999998 5677777899999999999999999999999999999999999999867


Q ss_pred             ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 017410          118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC  197 (372)
Q Consensus       118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a  197 (372)
                      |++|++|++|||++++|+++|++++++++ |+|++.+.|..+.+|+||+++|+++|+++|||+|++|+|++|++.++++|
T Consensus        82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a  160 (324)
T 1w85_B           82 FFGFVYEVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISA  160 (324)
T ss_dssp             SGGGGGGTHHHHHTTGGGHHHHTTTSSCC-CCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhhhccCCCcC-CEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence            99999999999999999999999998898 99988545667778999999988999999999999999999999999999


Q ss_pred             HhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCC
Q 017410          198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP  277 (372)
Q Consensus       198 ~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P  277 (372)
                      +++++|+|||+||+++|...+.++.+++.+++||++++++|.|++||+||+++..|++|++.|+++|++++||++++++|
T Consensus       161 ~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P  240 (324)
T 1w85_B          161 IRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQP  240 (324)
T ss_dssp             HHSSSCEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEES
T ss_pred             HHcCCCEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeeecC
Confidence            99999999999999998755566666677899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc--cccccCCCCcHHHHHHHHh
Q 017410          278 WDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYMPTKNKASCLES  355 (372)
Q Consensus       278 ~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~--~lle~~~l~~~~~~~~i~~  355 (372)
                      ||++.|.++++++++++|+||+...||||++|++++.++++..++.|+.++|.+|.+.+  .++++||+++++|++++++
T Consensus       241 ~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~l~~~~gl~~~~I~~~i~~  320 (324)
T 1w85_B          241 LDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVWLPNFKDVIETAKK  320 (324)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGGGHHHHSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHHHHHHhCcCHHHHHHHHHH
Confidence            99999999999999999999998899999999999998875456688999999887654  3799999999999998865
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 372
d1qs0b1204 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase 3e-65
d2bfdb1203 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid 7e-64
d1w85b1192 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, 1e-61
d1ik6a1191 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh 2e-60
d2ozlb1192 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh 4e-59
d1umdb1186 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid 2e-50
d2bfdb2138 c.48.1.2 (B:205-342) Branched-chain alpha-keto aci 3e-30
d1umdb2137 c.48.1.2 (B:188-324) Branched-chain alpha-keto aci 4e-30
d1qs0b2134 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas 2e-27
d1w85b2132 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet 9e-25
d2ozlb2138 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d 1e-23
d1ik6a2135 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d 5e-22
d2c42a3157 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu 4e-08
d2q78a1130 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 0.002
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

 Score =  204 bits (519), Expect = 3e-65
 Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 5/206 (2%)

Query: 36  SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLC 94
           +  ++ +  A+  A+ + LE D    V+G+DVG FGGVFRCT GL  ++GKSRVF+ P+ 
Sbjct: 1   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60

Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS  +F     T+R P
Sbjct: 61  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPL-TLRMP 119

Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
            G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+F EPK LY 
Sbjct: 120 CGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYN 179

Query: 215 LSVEEVPEDDYMLPL--SEAEVIREG 238
               +   D  + P        + +G
Sbjct: 180 GPF-DGHHDRPVTPWSKHPHSAVPDG 204
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192 Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157 Back     information, alignment and structure
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 {Thermotoga maritima [TaxId: 2336]} Length = 130 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 100.0
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 100.0
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 100.0
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 100.0
d1umdb2137 Branched-chain alpha-keto acid dehydrogenase {Ther 99.95
d2bfdb2138 Branched-chain alpha-keto acid dehydrogenase {Huma 99.95
d1ik6a2135 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.93
d2ozlb2138 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.93
d1w85b2132 Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d 99.92
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 99.92
d1gpua3146 Transketolase (TK), C-domain {Baker's yeast (Sacch 99.51
d2r8oa3136 Transketolase (TK), C-domain {Escherichia coli [Ta 99.49
d2c42a3157 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 99.45
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 99.36
d1itza3136 Transketolase (TK), C-domain {Maize (Zea mays) [Ta 99.24
d1r9ja3143 Transketolase (TK), C-domain {Leishmania mexicana 99.09
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 98.25
d2ieaa3186 Pyruvate dehydrogenase E1 component, C-domain {Esc 97.76
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.87
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.62
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 96.36
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 96.14
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 95.94
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 95.93
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 95.62
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 95.42
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 95.17
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 94.69
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 94.47
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 93.69
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 90.83
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 86.72
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 84.4
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 83.61
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 81.45
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.5e-46  Score=339.30  Aligned_cols=200  Identities=48%  Similarity=0.843  Sum_probs=184.4

Q ss_pred             CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEE
Q 017410           37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE  115 (372)
Q Consensus        37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~  115 (372)
                      .+.++|++|++++|.+++++|++++++++|++ .||.|+.+++|.++|||+|++|+||+|++++|+|+|||++|+||+++
T Consensus         2 ~~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve   81 (204)
T d1qs0b1           2 TTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE   81 (204)
T ss_dssp             EEECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEE
Confidence            35689999999999999999999999999997 77899999999999999999999999999999999999999999999


Q ss_pred             ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410          116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL  195 (372)
Q Consensus       116 i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~  195 (372)
                      ++|.+|+.+++|||+|++|+++|+++++.++ |++++.++|....+|+||+++++++|+++|||+|++|+|+.|++.+++
T Consensus        82 ~~~~df~~~a~dqi~n~~ak~~~~~~~~~~~-p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~  160 (204)
T d1qs0b1          82 IQFADYFYPASDQIVSEMARLRYRSAGEFIA-PLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLI  160 (204)
T ss_dssp             CSCGGGCGGGHHHHHTTTTTHHHHTTTSSCC-CCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHH
T ss_pred             EEecchhhHHHHHHHHHHHHhhcccccCccc-ceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence            9999999999999999999999999999999 999998877776778999999999999999999999999999999999


Q ss_pred             HhHhCCCcEEEEecccccccccccCCCCCccccCCc--eEEeeeC
Q 017410          196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSE--AEVIREG  238 (372)
Q Consensus       196 ~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk--~~v~~~g  238 (372)
                      +|++.++||++++||++|+.+ .+++.+.+..++|+  +.++++|
T Consensus       161 ~a~~~~~Pvi~~e~k~ly~~~-~~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         161 ASIECDDPVIFLEPKRLYNGP-FDGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHHHSSSCEEEEEEGGGSSSC-CCSCSSSCCCCSTTSTTCEEESS
T ss_pred             HHHhCCCcEEEEeeHHHhCCC-ccCCCccCCCCcccCccccCCCC
Confidence            999999999999999999875 34555556677776  5677765
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure