Citrus Sinensis ID: 017418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MMISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Secondary Structure (PSIPRED)
ccEEEcccccccccccEEEEcccccEEccccccccccccEEEEccccEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccEEcccccEEEEEcccEEEEEccccccEEEEEEEccccEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHccccEEEccEEEEcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHcccccccccccccccccccccccccHHHHHccccccEEccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccEEEEccEEEEEEccccccccccccccccccccccccccHHcccccccccEcccHHHHHHHHHccccHHEEcccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHHHHccccEcHHHHHHHHHHHHHHHcccHccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mmisrriwqkrpptsswiflrpytsqisvpspspsrfpvqtpsligFLSSYAASSFRSVYKISslempsmvsrccysnhaladlpasgivdvplaqtgegiaECELLKWFVKEGDeieefqplcavqsdkatIEITSRYKGKVAQllhapgnivKVGETLLKLVvgdsavptpssdvlesvkppgsenspdsklnkdtvggvlatpTVRNLAKLYginlydvdatgkdgrvLKEDVLKYAVQkgaadgpstasvSADCREQLlgeeetypqtfaevkwypddktvplrgfQRTMVKTMSMAakiphfhyveeINCDALVKLKASfqnnnsdpnikhtfLPSLIKSLSMAMSkypfmnscfnEESLEVILKGL
Flexible Loop (DISEMBL)
mmisrriwqkrpptsswiflrPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFqplcavqsdKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDsavptpssdvlesvkppgsenspdsklnkdtvggvlatptvrnLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQkgaadgpstasvSADCREQLLGEEEtypqtfaevkwypddktvpLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFqnnnsdpnikHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Low Complexity Region (SEG)
MMISRRIWQKRPPTSSWIFLRPYTSQIsvpspspsrfpvQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Disordered region (IsUnstruct)
*******************************************LIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD*******************************VGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ*******************LLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN***PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVI****
Disordered Region (DISOPRED)
*MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSS*****************************************VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK*******************************************PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK************************************************LRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN**SDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Disordered Region (DISEMBL)
**********RPPTSSWIFLRPYTSQI*********FPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP**********************LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ*************ADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Disordered Region (DISPRO)
*MISRRIWQKRPPTSSWIFLRPYTS*****SP*P*R**VQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG***********************************VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK**************************************DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q23571	448	Lipoamide acyltransferase	yes	no	0.739	0.613	0.378	6e-46
P11182	482	Lipoamide acyltransferase	yes	no	0.741	0.572	0.355	9e-41
P53395	482	Lipoamide acyltransferase	yes	no	0.739	0.570	0.364	1e-40
P11181	482	Lipoamide acyltransferase	yes	no	0.731	0.564	0.336	3e-38
P65636	430	Dihydrolipoyllysine-resid	yes	no	0.733	0.634	0.324	2e-30
P65635	430	Dihydrolipoyllysine-resid	yes	no	0.733	0.634	0.324	2e-30
Q59821	430	Dihydrolipoyllysine-resid	yes	no	0.731	0.632	0.326	2e-30
Q8NX76	430	Dihydrolipoyllysine-resid	yes	no	0.733	0.634	0.324	3e-30
Q6GAB9	430	Dihydrolipoyllysine-resid	yes	no	0.733	0.634	0.324	3e-30
Q5HGY9	430	Dihydrolipoyllysine-resid	yes	no	0.733	0.634	0.324	3e-30

>sp|Q23571|ODB2_CAEEL Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=ZK669.4 PE=3 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 108/285 (37%), Positives = 160/285 (56%), Gaps = 10/285 (3%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V   L+  GEGIAE ++ +W+VKEGD I +F  +C VQSDKA + I+ RY G V +L H
Sbjct: 30  VVQFKLSDIGEGIAEVQVKEWYVKEGDTISQFDKVCEVQSDKAAVTISCRYDGIVKKLYH 89

Query: 149 APGNIVKVGETLLKLVV-GDSAVP-TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATP 206
               + +VG+ L+ + + G+   P  P  +   S       ++P +  +  + G VLATP
Sbjct: 90  EVDGMARVGQALIDVEIEGNVEEPEQPKKEAASSSPEAPKSSAPKAPESAHSEGKVLATP 149

Query: 207 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEE 266
            VR +A    I L +V  TGKDGRVLKEDVLK+  Q  A     + ++    +      +
Sbjct: 150 AVRRIAIENKIKLAEVRGTGKDGRVLKEDVLKFLGQVPADHTSGSTNIRTTHQAPQPSSK 209

Query: 267 ETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ 326
              P          +D  VP+RG+ R MVKTM+ A KIPHF Y +EIN D+LVK +A  +
Sbjct: 210 SYEP--------LKEDVAVPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVKYRAELK 261

Query: 327 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
               + +IK +++P  IK+ S+A+ +YP +NS  +E+   VI K 
Sbjct: 262 EFAKERHIKLSYMPFFIKAASLALLEYPSLNSTTDEKMENVIHKA 306

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 6EC: 8

>sp|P11182|ODB2_HUMAN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3

 Score =  167 bits (424), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 155/284 (54%), Gaps = 8/284 (2%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
              +I  VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDIAYVGKPLVD--IETEALKDSEEDVVETPAVSHDEHTHQEIKGRKT----LATPAV 177

Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 268
           R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +  V          ++ T
Sbjct: 178 RRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEI-MPPPPKPKDMT 236

Query: 269 YPQTFAEVKWYP-DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN 327
            P   ++   +   DKT P++GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   + 
Sbjct: 237 VPILVSKPPVFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKP 296

Query: 328 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
                 IK +F+P  +K+ S+ + ++P +N+  +E    +  K 
Sbjct: 297 IAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKA 340

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P53395|ODB2_MOUSE Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dbt PE=2 SV=2

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 10/285 (3%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  VVQFKLSDIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKRLYY 123

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
              +I  VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDIAYVGKPLID--IETEALKDSEEDVVETPAVSHDEHTHQEIKGQKT----LATPAV 177

Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPSTASVSADCREQLLGEEE 267
           R LA    I L +V  +GKDGR+LKED+L +   Q GA   PS  S       Q   ++ 
Sbjct: 178 RRLAMENNIKLSEVVGSGKDGRILKEDILSFLEKQTGAILPPSPKSEITPPPPQ--PKDR 235

Query: 268 TYPQTFAEVKWYP-DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ 326
           T+P   A+   +   D+T P+ GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   +
Sbjct: 236 TFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCDEIDLTQLVKLREELK 295

Query: 327 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
                  IK +F+P  +K+ S+ + ++P +N+  +E    +  K 
Sbjct: 296 PVALARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKA 340

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P11181|ODB2_BOVIN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Bos taurus GN=DBT PE=1 SV=2

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 152/288 (52%), Gaps = 16/288 (5%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  IVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
              +   VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDTAYVGKPLVD--IETEALKDSEEDVVETPAVSHDEHTHQEIKGQKT----LATPAV 177

Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSA-----DCREQLL 263
           R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +            +++ +
Sbjct: 178 RRLAMENNIKLSEVIGSGKDGRILKEDILNYLEKQTGAILPPSPKAEIMPPPPKPKDRTI 237

Query: 264 GEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKA 323
               + P  F        D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+ 
Sbjct: 238 PIPISKPPVFIG-----KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLRE 292

Query: 324 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
             +       IK +F+P  +K+ S+ + ++P +N+  +E    +  K 
Sbjct: 293 ELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKA 340

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P65636|ODP2_STAAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=pdhC PE=1 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 145/287 (50%), Gaps = 14/287 (4%)

Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 154 VKVGETLLKLVVGDSAVPT--PSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 204
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 323
           E    P   +    +P + T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVSLEGDFP-ETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 324 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHK 289

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain N315) (taxid: 158879)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P65635|ODP2_STAAM Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhC PE=1 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 145/287 (50%), Gaps = 14/287 (4%)

Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 154 VKVGETLLKLVVGDSAVPT--PSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 204
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 323
           E    P   +    +P + T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVSLEGDFP-ETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 324 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHK 289

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q59821|ODP2_STAAU Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus GN=pdhC PE=3 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 16/288 (5%)

Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 154 VKVGETLLKLVVGDSAVPT--PSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 204
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSAD-CREQLL 263
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA   P+ ++ SAD    + +
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGA---PTASNESADSATNEEV 182

Query: 264 GEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLK 322
            E    P   +    +P + T  +   +R + K M  +    PH   ++EI+  AL   +
Sbjct: 183 AETPAAPAAVSLEGDFP-ETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHR 241

Query: 323 ASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
             F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K
Sbjct: 242 KKFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHK 289

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (taxid: 1280)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8NX76|ODP2_STAAW Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=pdhC PE=3 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 14/287 (4%)

Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 154 VKVGETLLKLVVGDSAVPT--PSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 204
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 323
           E    P        +P + T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVTLEGDFP-ETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 324 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHK 289

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6GAB9|ODP2_STAAS Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=pdhC PE=3 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 14/287 (4%)

Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 154 VKVGETLLKLVVGDSAVPT--PSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 204
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 323
           E    P        +P + T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVTLEGDFP-ETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 324 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHK 289

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5HGY9|ODP2_STAAC Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=pdhC PE=3 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 14/287 (4%)

Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 154 VKVGETLLKLVVGDSAVPT--PSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 204
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 323
           E    P        +P + T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVTLEGDFP-ETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 324 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHK 289

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
255551811	504	lipoamide acyltransferase component of b	0.970	0.716	0.603	1e-117
359477250	506	PREDICTED: lipoamide acyltransferase com	0.962	0.707	0.587	1e-116
296083342	463	unnamed protein product [Vitis vinifera]	0.827	0.665	0.625	1e-110
147792119	527	hypothetical protein VITISV_019281 [Viti	0.822	0.580	0.629	1e-109
224110406	490	predicted protein [Populus trichocarpa]	0.932	0.708	0.580	1e-109
356521841	515	PREDICTED: lipoamide acyltransferase com	0.948	0.685	0.528	1e-100
356564223	515	PREDICTED: lipoamide acyltransferase com	0.948	0.685	0.520	5e-98
193290668	505	putative branched-chain alpha-keto acid	0.766	0.564	0.599	1e-97
449515343	517	PREDICTED: LOW QUALITY PROTEIN: lipoamid	0.876	0.630	0.573	4e-97
449432874	517	PREDICTED: lipoamide acyltransferase com	0.876	0.630	0.573	4e-97

>gi|255551811|ref|XP_002516951.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Ricinus communis] gi|223544039|gb|EEF45565.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Ricinus communis]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/371 (60%), Positives = 273/371 (73%), Gaps = 10/371 (2%)

Query: 2   MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYK 61
           MI+RR WQ+R  +S    L PYT + S  +P+      +  SL+  LS YA++SF     
Sbjct: 1   MITRRFWQRRVWSSGTRSLYPYT-RPSSSTPAAVLTERKHQSLLD-LSYYASASFTLTNT 58

Query: 62  ISSLEMPSMVSRCCYSNHALADLP-ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEF 120
              +      +RC +++HALAD+P   G+VDVPLAQTGEGIAECELL+WFV+EGDE+EEF
Sbjct: 59  SVEVRNRYKENRCWFTSHALADVPIGGGVVDVPLAQTGEGIAECELLQWFVQEGDEVEEF 118

Query: 121 QPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES 180
           QPLC VQSDKATIEITSRYKGKVAQ+L+ PG+IVKVGETLLK+ V +S    P  D L+ 
Sbjct: 119 QPLCEVQSDKATIEITSRYKGKVAQILYVPGDIVKVGETLLKMAVEESLASIPRVDGLKD 178

Query: 181 VKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
            K      + D +  K  +GGVL TP VR+LAK YGI+L DV  TGKDG++LKED+L Y 
Sbjct: 179 TK------ALDLEQEKSQIGGVLCTPAVRHLAKQYGIDLNDVSGTGKDGKILKEDILNYG 232

Query: 241 VQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSM 300
           +QKG  +    AS +AD   QL   +E    T AEV    DDKTVPLRGFQRTMVKTMS+
Sbjct: 233 IQKGVIEDSPGAS-NADSGNQLKKGKEKSTCTSAEVGQLYDDKTVPLRGFQRTMVKTMSI 291

Query: 301 AAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360
           AAK+PHFHYVEEINC+ALV+LKASFQ+NN+DP IKHTFLP LIKSLSMA+SKYP+MNSCF
Sbjct: 292 AAKVPHFHYVEEINCNALVELKASFQSNNTDPGIKHTFLPLLIKSLSMALSKYPWMNSCF 351

Query: 361 NEESLEVILKG 371
           NEE++EV+LKG
Sbjct: 352 NEEAIEVLLKG 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477250|ref|XP_002270598.2| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Vitis vinifera]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/376 (58%), Positives = 270/376 (71%), Gaps = 18/376 (4%)

Query: 2   MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGF-----LSSYAASSF 56
           MISR IWQ++   +   +LR   +Q S  SPSP    +   S IGF     +S YA +SF
Sbjct: 1   MISRGIWQQKCRNAIRRWLRSCAAQTSPLSPSPV-VSLGNSSYIGFCSQPIVSRYAMASF 59

Query: 57  RSVY-KISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGD 115
             V  K+  L +P  + R C+S+HAL DLPASGIV +PLAQTGEGIAECELLKWFVKEGD
Sbjct: 60  SMVNDKLMDLNIPYSIKRSCFSSHALLDLPASGIVSIPLAQTGEGIAECELLKWFVKEGD 119

Query: 116 EIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSS 175
           ++EEFQPLC VQSDKATIEITSRYKG V+Q+++ PG+IVKVGE+LLK+VV +S     +S
Sbjct: 120 QVEEFQPLCEVQSDKATIEITSRYKGTVSQIIYVPGDIVKVGESLLKMVVEESQGSNLTS 179

Query: 176 DVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235
           +       P    S D  L     GGVLATP VRNLAK YG+++  +  TG+DGRVLKED
Sbjct: 180 NA------PDDMKSMD--LRHSNTGGVLATPAVRNLAKQYGVDINHILGTGQDGRVLKED 231

Query: 236 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMV 295
           VL +AVQKG    PS+ SV++   E   GEE+ Y  T A   W  +DKTVP+RGFQR M+
Sbjct: 232 VLTHAVQKGLCKEPSSLSVNS--VEHFQGEEK-YSHTLAADGWQYEDKTVPIRGFQRAMI 288

Query: 296 KTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPF 355
           K+M++AAKIPHFHYVEEINCDALVKLKASFQ  N DP +KHTFLP +IK+LSMA+SKYP 
Sbjct: 289 KSMTLAAKIPHFHYVEEINCDALVKLKASFQEENRDPEVKHTFLPFMIKTLSMALSKYPL 348

Query: 356 MNSCFNEESLEVILKG 371
           +NSCFNEE  E+ +KG
Sbjct: 349 LNSCFNEELQEITVKG 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083342|emb|CBI22978.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/315 (62%), Positives = 242/315 (76%), Gaps = 7/315 (2%)

Query: 61  KISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEF 120
           K+  L +P  + R C+S+HAL DLPASGIV +PLAQTGEGIAECELLKWFVKEGD++EEF
Sbjct: 10  KLMDLNIPYSIKRSCFSSHALLDLPASGIVSIPLAQTGEGIAECELLKWFVKEGDQVEEF 69

Query: 121 QPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES 180
           QPLC VQSDKATIEITSRYKG V+Q+++ PG+IVKVGE+LLK+VV +S     +S+  + 
Sbjct: 70  QPLCEVQSDKATIEITSRYKGTVSQIIYVPGDIVKVGESLLKMVVEESQGSNLTSNAPDD 129

Query: 181 VKPPGSE----NSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
           +K  G+E    +   S L     GGVLATP VRNLAK YG+++  +  TG+DGRVLKEDV
Sbjct: 130 MKSMGAEVCDSSIQSSDLRHSNTGGVLATPAVRNLAKQYGVDINHILGTGQDGRVLKEDV 189

Query: 237 LKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVK 296
           L +AVQKG    PS+ SV++   E   GEE+ Y  T A   W  +DKTVP+RGFQR M+K
Sbjct: 190 LTHAVQKGLCKEPSSLSVNS--VEHFQGEEK-YSHTLAADGWQYEDKTVPIRGFQRAMIK 246

Query: 297 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFM 356
           +M++AAKIPHFHYVEEINCDALVKLKASFQ  N DP +KHTFLP +IK+LSMA+SKYP +
Sbjct: 247 SMTLAAKIPHFHYVEEINCDALVKLKASFQEENRDPEVKHTFLPFMIKTLSMALSKYPLL 306

Query: 357 NSCFNEESLEVILKG 371
           NSCFNEE  E+ +KG
Sbjct: 307 NSCFNEELQEITVKG 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792119|emb|CAN68576.1| hypothetical protein VITISV_019281 [Vitis vinifera]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/313 (62%), Positives = 241/313 (76%), Gaps = 7/313 (2%)

Query: 63  SSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQP 122
           S L +P  + R C+S+HAL DLPASGIV +PLAQTGEGIAECELLKWFVKEGD++EEFQP
Sbjct: 84  SKLNIPYSIKRSCFSSHALLDLPASGIVSIPLAQTGEGIAECELLKWFVKEGDQVEEFQP 143

Query: 123 LCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVK 182
           LC VQSDKATIEITSRYKG V+Q+++ PG+IVKVGE+LLK+VV +S     +S+  + +K
Sbjct: 144 LCEVQSDKATIEITSRYKGTVSQIIYVPGDIVKVGESLLKMVVEESQGSNLTSNAPDDMK 203

Query: 183 PPGSE----NSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238
             G+E    +   S L     GGVLATP VRNLAK YG+++  +  TG+DGRVLKEDVL 
Sbjct: 204 SMGAEVCDSSIQSSDLRXSNTGGVLATPAVRNLAKQYGVDINHILGTGQDGRVLKEDVLT 263

Query: 239 YAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTM 298
           +AVQKG    PS+ SV++   E   GEE+ Y  T A   W  +DKTVP+RGFQR M+K+M
Sbjct: 264 HAVQKGLCKEPSSLSVNS--VEHFQGEEK-YSHTLAADGWQYEDKTVPIRGFQRAMIKSM 320

Query: 299 SMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNS 358
           ++AAKIPHFHYVEEINCDALVKLKASFQ  N DP +KHTFLP +IK+LSMA+SKYP +NS
Sbjct: 321 TLAAKIPHFHYVEEINCDALVKLKASFQEENRDPEVKHTFLPFMIKTLSMALSKYPLLNS 380

Query: 359 CFNEESLEVILKG 371
           CFNEE  E+ +KG
Sbjct: 381 CFNEELQEITVKG 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110406|ref|XP_002315510.1| predicted protein [Populus trichocarpa] gi|222864550|gb|EEF01681.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/372 (58%), Positives = 267/372 (71%), Gaps = 25/372 (6%)

Query: 1   MMISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVY 60
           M+I RR+W K   +S+  FL PY      P+P+  + P + P      + Y  +S     
Sbjct: 1   MLIVRRVWHKLVRSSTPRFLYPY------PAPALLKAP-KLP-----FTGYTNNSI---- 44

Query: 61  KISSLEMPSMVSRCCYSNHALADLPASG-IVDVPLAQTGEGIAECELLKWFVKEGDEIEE 119
              ++++ + V    +S+ ALAD   S  IVDVPLAQTGEGIAECELLKWFVKEGDE+E+
Sbjct: 45  ---NIKIETKVGWRLFSSQALADGGMSDRIVDVPLAQTGEGIAECELLKWFVKEGDEVED 101

Query: 120 FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLE 179
           FQPLC VQSDKATIEITSRYKGKVAQ  + PG+IVKVGETLLK+VV  + VP    DV E
Sbjct: 102 FQPLCEVQSDKATIEITSRYKGKVAQFQYVPGDIVKVGETLLKMVVEGAQVPPQKHDVTE 161

Query: 180 SVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
           ++    SE     ++NK    GVL+TP VR+L K Y INL DV  +GKDGRVLKED++K+
Sbjct: 162 NIISHCSE----GEVNKSKTCGVLSTPAVRHLGKQYDINLNDVHGSGKDGRVLKEDIIKH 217

Query: 240 AVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMS 299
           A+QKG     S+   +AD  +Q L  EE Y    AE+  +  DKT+PLRGFQRTMVKTMS
Sbjct: 218 AIQKGIIK-DSSGFENADSGDQFLRGEEDYSYVPAELGSHHGDKTIPLRGFQRTMVKTMS 276

Query: 300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359
           MAAK+PHFHYVEEINCDALV+LK SFQNNN++P +KHTFLPSLIKSLS+A+SKYP++NS 
Sbjct: 277 MAAKVPHFHYVEEINCDALVELKESFQNNNTEPGVKHTFLPSLIKSLSVAISKYPWINSR 336

Query: 360 FNEESLEVILKG 371
           FNE+S+EVILKG
Sbjct: 337 FNEDSMEVILKG 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521841|ref|XP_003529559.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/390 (52%), Positives = 262/390 (67%), Gaps = 37/390 (9%)

Query: 2   MISRRIWQKRPPTSSWIFLRPYTSQISVPSPS-PSRFPVQTPSLIGFLSSYAASSFRSVY 60
           M+S RIWQ+R   S+        S  S  SP+ P RF            + A+SS   ++
Sbjct: 1   MLSSRIWQRRALISARTLFSASASHSSSSSPAIPFRFS----------KANASSSSHLIF 50

Query: 61  KISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEF 120
             + + +        +S     +LPAS IVDVPLAQTGEGIAECELLKW+V+EGD +E+F
Sbjct: 51  NFARVNI------YWFSTQPALELPASKIVDVPLAQTGEGIAECELLKWYVQEGDYVEDF 104

Query: 121 QPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP--------- 171
           QPLC VQSDKATIEITSRYKGK++  L+ PG+IVKVGETLLK++V +SA P         
Sbjct: 105 QPLCEVQSDKATIEITSRYKGKISSFLYVPGDIVKVGETLLKILVDESAFPSGTPCDSEN 164

Query: 172 --TPSSD---VLESVKPPGSENSPDSKL-----NKDTVGGVLATPTVRNLAKLYGINLYD 221
             +P SD   V ESV     ++S ++KL      K    GVL+TP +R+LAK +GI++ +
Sbjct: 165 AKSPDSDQTLVNESVLTTVVDDSDNAKLIDSDPGKGRQTGVLSTPAIRSLAKQHGIDITE 224

Query: 222 VDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPD 281
           V  TGKDGRVLKEDVL +AV+KG    PST  + +D  EQL G E        +     +
Sbjct: 225 VCGTGKDGRVLKEDVLNFAVKKGIIKNPSTV-LHSDSGEQLQGAEGYNCNVATKFYRSSE 283

Query: 282 DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 341
           D+T+PLRGFQR MVK+MS+AAK+PHFHYV+EINCDALV+LK SFQ NN  P++K+TFLP 
Sbjct: 284 DRTLPLRGFQRAMVKSMSLAAKVPHFHYVDEINCDALVELKTSFQKNNPYPDVKYTFLPI 343

Query: 342 LIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           LIKSLSMA+SKYPFMNSCF E++LEV+LKG
Sbjct: 344 LIKSLSMALSKYPFMNSCFKEDALEVVLKG 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564223|ref|XP_003550355.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Glycine max]

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 203/390 (52%), Positives = 258/390 (66%), Gaps = 37/390 (9%)

Query: 2   MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYK 61
           M+S RIWQ+R   S+        S  S                + F  + A SS   ++ 
Sbjct: 1   MLSNRIWQRRALISARTLFSGSASHSSS---------SSHAISLRFAKANAPSSSHVIFN 51

Query: 62  ISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQ 121
            +       V R  +S     +LPAS IVDVPLAQTGEGIAECELLKW+V+EGD +E+FQ
Sbjct: 52  FAR------VDRYWFSTQPALELPASKIVDVPLAQTGEGIAECELLKWYVQEGDYVEDFQ 105

Query: 122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPT--------- 172
           PLC VQSDKATIEITSRYKGK++ +L+ PG+IVKVGETLLK++V +S  P+         
Sbjct: 106 PLCEVQSDKATIEITSRYKGKISNILYVPGDIVKVGETLLKILVDESTFPSGIPCDSENA 165

Query: 173 --PSSD---VLESVKPPGSENSPDSKL-----NKDTVGGVLATPTVRNLAKLYGINLYDV 222
             P +D   V ESV     ++S + KL      K    GV +TP VR+LAK +GI++ ++
Sbjct: 166 KSPDTDQTLVNESVFTTVIDDSDNGKLIDSDPGKGRQTGVSSTPAVRSLAKQHGIDITEI 225

Query: 223 DATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP-D 281
             TGKDGR+LKEDVL ++V+KG    PST  + +D  EQL G E  Y    A   + P +
Sbjct: 226 CGTGKDGRILKEDVLNFSVKKGIIKNPSTV-LQSDSGEQLQGAE-GYNCNVATKSYRPSE 283

Query: 282 DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 341
           D+T+PLRGFQR MVK+MS+AAK+PHFHYV+EINCDALV+LK SFQ NN  P++K+TFLP 
Sbjct: 284 DRTLPLRGFQRAMVKSMSLAAKVPHFHYVDEINCDALVELKTSFQKNNPYPDVKYTFLPI 343

Query: 342 LIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           LIKSLSMA+SKYPFMNSCF E++LEVILKG
Sbjct: 344 LIKSLSMALSKYPFMNSCFKEDALEVILKG 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193290668|gb|ACF17642.1| putative branched-chain alpha-keto acid dehydrogenase E2 subunit [Capsicum annuum]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/302 (59%), Positives = 225/302 (74%), Gaps = 17/302 (5%)

Query: 74  CCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATI 133
           C ++  A  DLPA G++D+PLAQTGEGIAECELLKWFV+EGD +EEFQPLC VQSDKATI
Sbjct: 75  CSFTTQAAIDLPAGGVIDIPLAQTGEGIAECELLKWFVQEGDLVEEFQPLCEVQSDKATI 134

Query: 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSK 193
           EITSRYKGK++Q+LH PG+IVKVGETLLK+ + +   P  +SD  E +    S+ S  S 
Sbjct: 135 EITSRYKGKISQILHVPGDIVKVGETLLKIGIDEIPDPIETSDASEKMTSLESDCSGSSD 194

Query: 194 LN----KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 249
           ++    K  +GGV +TP +RNLAK YG+++ DV ATGKDGR+LKEDV+ YA+QKG  + P
Sbjct: 195 ISSVPGKPKIGGVSSTPAIRNLAKQYGLDINDVPATGKDGRILKEDVINYAMQKGLIEAP 254

Query: 250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHY 309
           +       C  Q L E          +    +DKT+ LRG+QR MVK+M++AAKIPHF+Y
Sbjct: 255 A-------CALQKLSEVSPL------IGGGYEDKTLQLRGYQRAMVKSMTLAAKIPHFYY 301

Query: 310 VEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVIL 369
           VEE+NCDALV+LK SFQN NSDP IKHTFLP LIKSLSMA++ +P +NS FNEES EVIL
Sbjct: 302 VEEMNCDALVELKTSFQNENSDPEIKHTFLPVLIKSLSMALTTHPMLNSRFNEESYEVIL 361

Query: 370 KG 371
           KG
Sbjct: 362 KG 363

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515343|ref|XP_004164709.1| PREDICTED: LOW QUALITY PROTEIN: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/347 (57%), Positives = 240/347 (69%), Gaps = 21/347 (6%)

Query: 28  SVPSPSPSRFPVQTPSL-IGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPA 86
           S+P P P   P+ +PS    +L S+A      +  +S +        C +S+ AL  LP 
Sbjct: 47  SLPHPFP---PLGSPSSGRAWLHSHANRFEARIKGVSKI--------CRFSSQALDGLPL 95

Query: 87  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 146
             +VD+PLAQTGEGIAECELLKWFV+EGDE+EEFQPLC VQSDKATIEITSRYKGKV QL
Sbjct: 96  FRLVDIPLAQTGEGIAECELLKWFVQEGDEVEEFQPLCEVQSDKATIEITSRYKGKVGQL 155

Query: 147 LHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES--VKPPGSENSPDSKLNKDTVGGVLA 204
           L+ PG+IVKVGETLLK+ V         S + E    KP   E+  D   N     GVL+
Sbjct: 156 LYVPGDIVKVGETLLKVHVEGFEDEIQVSGLTEGHLAKPEVKESQQDKSKN----CGVLS 211

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
           TP VR+LAK YGI++ DV  +G DGRVLKEDVL+YAV+KG  +     S +A  R Q   
Sbjct: 212 TPPVRDLAKEYGIDINDVSGSGPDGRVLKEDVLQYAVKKGILE--DHVSSAASFRVQF-D 268

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKAS 324
           E ET+      V W  +DK V LRGFQR MVK+M++AAK+PHFHYVEEINCDAL++LKAS
Sbjct: 269 ESETHTHAPDGVMWTYEDKKVQLRGFQRAMVKSMAIAAKVPHFHYVEEINCDALLELKAS 328

Query: 325 FQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           FQ N ++PN+KHT LP LIKSLSMAMSKYP +NSCFNE+S EV LKG
Sbjct: 329 FQGNTTEPNVKHTSLPLLIKSLSMAMSKYPMLNSCFNEDSFEVTLKG 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432874|ref|XP_004134223.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/347 (57%), Positives = 240/347 (69%), Gaps = 21/347 (6%)

Query: 28  SVPSPSPSRFPVQTPSL-IGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPA 86
           S+P P P   P+ +PS    +L S+A      +  +S +        C +S+ AL  LP 
Sbjct: 47  SLPHPFP---PLGSPSSGRAWLHSHANRFEARIKGVSKI--------CRFSSQALDGLPL 95

Query: 87  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 146
             +VD+PLAQTGEGIAECELLKWFV+EGDE+EEFQPLC VQSDKATIEITSRYKGKV QL
Sbjct: 96  FRLVDIPLAQTGEGIAECELLKWFVQEGDEVEEFQPLCEVQSDKATIEITSRYKGKVGQL 155

Query: 147 LHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES--VKPPGSENSPDSKLNKDTVGGVLA 204
           L+ PG+IVKVGETLLK+ V         S + E    KP   E+  D   N     GVL+
Sbjct: 156 LYVPGDIVKVGETLLKVHVEGFEDEIQVSGLTEGHLAKPEVKESQQDKSKN----CGVLS 211

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 264
           TP VR+LAK YGI++ DV  +G DGRVLKEDVL+YAV+KG  +     S +A  R Q   
Sbjct: 212 TPPVRDLAKEYGIDINDVSGSGPDGRVLKEDVLQYAVKKGILE--DHVSSAASFRVQF-D 268

Query: 265 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKAS 324
           E ET+      V W  +DK V LRGFQR MVK+M++AAK+PHFHYVEEINCDAL++LKAS
Sbjct: 269 ESETHTHAPDGVMWTYEDKKVQLRGFQRAMVKSMAIAAKVPHFHYVEEINCDALLELKAS 328

Query: 325 FQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           FQ N ++PN+KHT LP LIKSLSMAMSKYP +NSCFNE+S EV LKG
Sbjct: 329 FQGNTTEPNVKHTSLPLLIKSLSMAMSKYPMLNSCFNEDSFEVTLKG 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2083358	483	BCE2 "AT3G06850" [Arabidopsis	0.916	0.706	0.537	2.5e-88
WB|WBGene00014054	448	ZK669.4 [Caenorhabditis elegan	0.736	0.611	0.394	5.6e-45
ZFIN|ZDB-GENE-050320-85	493	dbt "dihydrolipoamide branched	0.755	0.569	0.362	8.4e-42
MGI|MGI:105386	482	Dbt "dihydrolipoamide branched	0.733	0.566	0.371	4.6e-41
UNIPROTKB|P11182	482	DBT "Lipoamide acyltransferase	0.739	0.570	0.356	5.3e-40
UNIPROTKB|F1P1X9	493	DBT "Uncharacterized protein"	0.747	0.563	0.364	8.7e-40
FB|FBgn0030612	462	CG5599 [Drosophila melanogaste	0.733	0.590	0.382	1.1e-39
UNIPROTKB|E2RQG4	482	DBT "Uncharacterized protein"	0.771	0.595	0.362	1.4e-39
UNIPROTKB|F1S563	482	DBT "Uncharacterized protein"	0.733	0.566	0.361	2.3e-39
UNIPROTKB|P11181	482	DBT "Lipoamide acyltransferase	0.731	0.564	0.360	9.9e-39

TAIR|locus:2083358 BCE2 "AT3G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 199/370 (53%), Positives = 252/370 (68%)

Query:     2 MISRRIWQKRPPTSSWIFLRPYTSQIXXXXXXXXXXXXQTPSLIGFLSSYAASSFRSVYK 61
             MI+RRIW+      S  FLRP++S              + P  +   SS  AS    V+ 
Sbjct:     1 MIARRIWR------SHRFLRPFSSS------SVCSPPFRVPEYLSQSSSSPASRPFFVHP 48

Query:    62 ISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQ 121
              + ++     SR  +SN A+A    SG++DVPLAQTGEGIAECELLKWFVKEGD +EEFQ
Sbjct:    49 PTLMKWGGG-SRSWFSNEAMATDSNSGLIDVPLAQTGEGIAECELLKWFVKEGDSVEEFQ 107

Query:   122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESV 181
             PLC VQSDKATIEITSR+KGKVA + H+PG+I+KVGETL++L V DS     ++D  E V
Sbjct:   108 PLCEVQSDKATIEITSRFKGKVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIV 167

Query:   182 KPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241
                GS+   ++ L      G L+TP VRNLAK  GI++  +  TGKDGRVLKEDVL+++ 
Sbjct:   168 TLGGSKQGTENLL------GALSTPAVRNLAKDLGIDINVITGTGKDGRVLKEDVLRFSD 221

Query:   242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA 301
             QKG      T SVS++    ++G +     T A   +  +DKTVPLRGF R MVKTM+MA
Sbjct:   222 QKGFV----TDSVSSE--HAVIGGDSV--STKASSNF--EDKTVPLRGFSRAMVKTMTMA 271

Query:   302 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN 361
               +PHFH+VEEINCD+LV+LK  F+ NN+D  IKHTFLP+LIKSLSMA++KYPF+NSCFN
Sbjct:   272 TSVPHFHFVEEINCDSLVELKQFFKENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFN 331

Query:   362 EESLEVILKG 371
              ESLE+ILKG
Sbjct:   332 AESLEIILKG 341

GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016407 "acetyltransferase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0004147 "dihydrolipoamide branched chain acyltransferase activity" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

WB|WBGene00014054 ZK669.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 112/284 (39%), Positives = 165/284 (58%)

Query:    89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             +V   L+  GEGIAE ++ +W+VKEGD I +F  +C VQSDKA + I+ RY G V +L H
Sbjct:    30 VVQFKLSDIGEGIAEVQVKEWYVKEGDTISQFDKVCEVQSDKAAVTISCRYDGIVKKLYH 89

Query:   149 APGNIVKVGETLLKLVV-GDSAVPT-PSSDVLESVKPPGSENSPDSKLNKDTVGGVLATP 206
                 + +VG+ L+ + + G+   P  P  +   S       ++P +  +  + G VLATP
Sbjct:    90 EVDGMARVGQALIDVEIEGNVEEPEQPKKEAASSSPEAPKSSAPKAPESAHSEGKVLATP 149

Query:   207 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEE 266
              VR +A    I L +V  TGKDGRVLKEDVLK+  Q   AD  S  S +     Q     
Sbjct:   150 AVRRIAIENKIKLAEVRGTGKDGRVLKEDVLKFLGQV-PADHTS-GSTNIRTTHQA---P 204

Query:   267 ETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ 326
             +   +++  +K   +D  VP+RG+ R MVKTM+ A KIPHF Y +EIN D+LVK +A  +
Sbjct:   205 QPSSKSYEPLK---EDVAVPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVKYRAELK 261

Query:   327 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
                 + +IK +++P  IK+ S+A+ +YP +NS  +E+   VI K
Sbjct:   262 EFAKERHIKLSYMPFFIKAASLALLEYPSLNSTTDEKMENVIHK 305

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

ZFIN|ZDB-GENE-050320-85 dbt "dihydrolipoamide branched chain transacylase E2" [Danio rerio (taxid:7955)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 107/295 (36%), Positives = 155/295 (52%)

Query:    86 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ 145
             A  IV   L+  GEGI E  + +W+VKEGD++ +F  +C VQSDKA++ ITSRY G + +
Sbjct:    60 ARPIVQFKLSDIGEGIMEVTVKEWYVKEGDKVSQFDSICEVQSDKASVTITSRYDGVIRK 119

Query:   146 LLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLAT 205
             L +   +I  VG+ L+ +        +P  DV+E+      E+SP       T     AT
Sbjct:   120 LYYDVDSIALVGKPLVDIETDGGQAESPQEDVVETPAVSQEEHSPQEIKGHKTQ----AT 175

Query:   206 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPST-----ASVSADCR 259
             P VR LA    I L +V  TGKDGR+LKED+L + A Q GA   P+          A   
Sbjct:   176 PAVRRLAMENNIKLSEVVGTGKDGRILKEDILNFIAKQTGAILPPAPFQEIRPQPPAAAA 235

Query:   260 EQLLGEEETYPQTFAEVKWYP----DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINC 315
                   + T P     V   P     D T P++GFQ+ MVKTMS A KIPHF Y +E++ 
Sbjct:   236 PLTPSAKATPPSVPIPVIPKPVFTGKDHTEPIKGFQKAMVKTMSAALKIPHFGYKDEVDL 295

Query:   316 DALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
               LV+L++  +       +K +++P  IK+ S+A+  +P +NS  +E    +  K
Sbjct:   296 SQLVRLRSELKGLTESRGVKLSYMPFFIKAASLALLHFPILNSSLDENCTSITYK 350

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:105386 Dbt "dihydrolipoamide branched chain transacylase E2" [Mus musculus (taxid:10090)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 106/285 (37%), Positives = 158/285 (55%)

Query:    89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 VVQFKLSDIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKRLYY 123

Query:   149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGG-VLATPT 207
                +I  VG+ L+ +     A+     DV+E+   P    S D   +++  G   LATP 
Sbjct:   124 NLDDIAYVGKPLIDIET--EALKDSEEDVVET---PAV--SHDEHTHQEIKGQKTLATPA 176

Query:   208 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGPSTASVSADCREQLLGEE 266
             VR LA    I L +V  +GKDGR+LKED+L +   Q GA   PS  S       Q   ++
Sbjct:   177 VRRLAMENNIKLSEVVGSGKDGRILKEDILSFLEKQTGAILPPSPKSEITPPPPQ--PKD 234

Query:   267 ETYPQTFAEVKWYPD-DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASF 325
              T+P   A+   +   D+T P+ GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   
Sbjct:   235 RTFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCDEIDLTQLVKLREEL 294

Query:   326 QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
             +       IK +F+P  +K+ S+ + ++P +N+  +E    +  K
Sbjct:   295 KPVALARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 339

GO:0005739 "mitochondrion" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|P11182 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 101/283 (35%), Positives = 155/283 (54%)

Query:    89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query:   149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
                +I  VG+ L+ +     A+     DV+E+      E++      + T    LATP V
Sbjct:   124 NLDDIAYVGKPLVDIET--EALKDSEEDVVETPAVSHDEHTHQEIKGRKT----LATPAV 177

Query:   209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 268
             R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +  V          ++ T
Sbjct:   178 RRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEI-MPPPPKPKDMT 236

Query:   269 YPQTFAEVKWYPD-DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN 327
              P   ++   +   DKT P++GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   + 
Sbjct:   237 VPILVSKPPVFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKP 296

Query:   328 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
                   IK +F+P  +K+ S+ + ++P +N+  +E    +  K
Sbjct:   297 IAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 339

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0005947 "mitochondrial alpha-ketoglutarate dehydrogenase complex" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1P1X9 DBT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 106/291 (36%), Positives = 155/291 (53%)

Query:    89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             IV   L+  GEGI E  + +W++KEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 IVQFKLSDIGEGITEVTVKEWYIKEGDSVSQFDSICEVQSDKASVTITSRYDGIIRKLHY 123

Query:   149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
                 I  VG+ L+ + +  S    P  DV+E+      E++        T    LATP V
Sbjct:   124 NLDEIAYVGKPLVDIEIDASKGVAPEEDVVETPAMSHEEHTHQEIKGHKT----LATPAV 179

Query:   209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPST-ASVSADC-REQLL-- 263
             R LA    I L +V  TGKD R+LKED+L + A Q GA   PS  A + A   + + +  
Sbjct:   180 RRLAMENNIKLSEVIGTGKDNRILKEDILSFLAKQTGAILPPSPKAEIIAPLSKSETVPT 239

Query:   264 ---GEEETYPQTFAE-VKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALV 319
                 +    P   +  V +   DKT P+ GF + MVKTMS A KIPHF Y +EI+   LV
Sbjct:   240 APKDKARKIPIPISRPVVFSGKDKTEPITGFHKAMVKTMSAALKIPHFGYCDEIDLTHLV 299

Query:   320 KLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
             +L+   +       +K +F+P  IK+ S+ + +YP +N+  +E    V  K
Sbjct:   300 QLREELKPLAQSRGVKLSFMPFFIKAASLGLLQYPILNASLDEGCQNVTYK 350

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

FB|FBgn0030612 CG5599 [Drosophila melanogaster (taxid:7227)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 112/293 (38%), Positives = 162/293 (55%)

Query:    90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
             V   L+  GEGI E  + +WFVKEGD +E+F  LC VQSDKA++ ITSRY GK+ ++ H 
Sbjct:    39 VSFNLSDIGEGIREVTVKEWFVKEGDTVEQFDNLCEVQSDKASVTITSRYDGKITKIHHK 98

Query:   150 PGNIVKVGETLLKL-VVG-DSAVPTPSSDVLESVKPPGSENSPDSKLNKD-----TVGGV 202
                I  VG+ LL   VV  D   P  SS    S     S +  + K + +     T G V
Sbjct:    99 IDEIALVGKPLLDFDVVNEDEDEPEDSSSSSSSTSSDSSASENEEKQSAEASATPTEGRV 158

Query:   203 L--ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCRE 260
             +  ATP+VR LAK + ++L  V ATGK+GRVLK D+L++  Q      P   +V      
Sbjct:   159 IIPATPSVRRLAKEHQLDLAKVPATGKNGRVLKGDILEFLGQV-----PPGTNVP---HP 210

Query:   261 QLLGEEETY-PQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALV 319
              LL +  +  P   A V   P D+   L+G ++ M+K+M+ + KIPHF Y +EI+   L+
Sbjct:   211 TLLAKTPSAAPSGAASVS-VPADRVEVLKGVRKAMLKSMTESLKIPHFAYSDEIDMTQLM 269

Query:   320 KLKASFQNNNSDPNI-KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
             + +   Q    +  + K TF+P  IK+ S+A+SKYP +NS  +  S  ++ KG
Sbjct:   270 QFRNQLQLVAKENGVPKLTFMPFCIKAASIALSKYPIVNSSLDLASESLVFKG 322

GO:0004147 "dihydrolipoamide branched chain acyltransferase activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0009353 "mitochondrial oxoglutarate dehydrogenase complex" evidence=ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|E2RQG4 DBT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 109/301 (36%), Positives = 162/301 (53%)

Query:    76 YSN-HALADLPAS--G-IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131
             YS+ H L    A+  G IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA
Sbjct:    47 YSHPHQLLQTSAALQGQIVQFKLSDIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKA 106

Query:   132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPD 191
             ++ ITSRY G + +L +   +I  VG+ L+ +     A+     DV+E+   P    S D
Sbjct:   107 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET--EALKDSEEDVVET---PAV--SHD 159

Query:   192 SKLNKDTVGG-VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGP 249
                +++  G   LATP VR LA    I L +V  +GKDGR+LKED+L Y   Q GA   P
Sbjct:   160 EHTHQEIKGQKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPP 219

Query:   250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHY 309
             S  +          G+    P +     +   D+T P++GF + MVKTMS A KIPHF Y
Sbjct:   220 SPKAELVPPPPTPKGKVTPMPASKPPA-FTGRDRTEPIKGFHKAMVKTMSAALKIPHFGY 278

Query:   310 VEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVIL 369
              +E++   LVKL+   +       IK +F+P  +K+ S+ + ++P +N+  +E    +  
Sbjct:   279 CDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQHITY 338

Query:   370 K 370
             K
Sbjct:   339 K 339

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

UNIPROTKB|F1S563 DBT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 103/285 (36%), Positives = 156/285 (54%)

Query:    89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 IVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query:   149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGG-VLATPT 207
                +   VG+ L+ +     A+     DV+E+   P    S D   +++  G   LATP 
Sbjct:   124 NLDDTAYVGKPLVDIET--EALKDSEEDVVET---PAV--SHDEHTHQEIKGHKTLATPA 176

Query:   208 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGPSTASVSADCREQLLGEE 266
             VR LA    I L +V  +GKDGR+LKED+L Y   Q GA   PS  +       +   ++
Sbjct:   177 VRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKAEIIPPPPK--PKD 234

Query:   267 ETYPQTFAEVKWYPD-DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASF 325
              T P   ++   +   D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+   
Sbjct:   235 RTIPIPISKPPVFTGKDRTEPIKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREEL 294

Query:   326 QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
             +       IK TF+P  +K+ S+ + ++P +N+  +E    +  K
Sbjct:   295 KPIALARGIKLTFMPFFLKAASLGLLQFPILNASMDENCQSITYK 339

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

UNIPROTKB|P11181 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 103/286 (36%), Positives = 157/286 (54%)

Query:    89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 IVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query:   149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGG-VLATPT 207
                +   VG+ L+ +     A+     DV+E+   P    S D   +++  G   LATP 
Sbjct:   124 NLDDTAYVGKPLVDIET--EALKDSEEDVVET---PAV--SHDEHTHQEIKGQKTLATPA 176

Query:   208 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGPST-ASVSADCREQLLGE 265
             VR LA    I L +V  +GKDGR+LKED+L Y   Q GA   PS  A +     +    +
Sbjct:   177 VRRLAMENNIKLSEVIGSGKDGRILKEDILNYLEKQTGAILPPSPKAEIMPPPPKP---K 233

Query:   266 EETYPQTFAEVKWY-PDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKAS 324
             + T P   ++   +   D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+  
Sbjct:   234 DRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREE 293

Query:   325 FQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
              +       IK +F+P  +K+ S+ + ++P +N+  +E    +  K
Sbjct:   294 LKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 339

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	LOW CONFIDENCE prediction!
3rd Layer	2.3.1.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	1e-150
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-57
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-51
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	5e-49
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-27
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-27
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	2e-23
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-23
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	2e-21
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-18
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	8e-18
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-16
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-15
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	2e-14
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	1e-13
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	2e-13
pfam02817	39	pfam02817, E3_binding, e3 binding domain	6e-10
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	5e-08
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	7e-08
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	1e-07
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	1e-07
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-07
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	7e-06
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	2e-05
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	4e-05
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	5e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	1e-04
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	5e-04
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	7e-04
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	8e-04
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	0.004

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  430 bits (1107), Expect = e-150
 Identities = 177/280 (63%), Positives = 208/280 (74%), Gaps = 6/280 (2%)

Query: 92  VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 151
           VPLAQTGEGIAECELL+WFVKEGD++EEFQPLC VQSDKATIEITSRYKGKVAQ+  +PG
Sbjct: 1   VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPG 60

Query: 152 NIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNL 211
           +IVKVGETLLK++V DS      S +L +          +S      + GVL+TP VR+L
Sbjct: 61  DIVKVGETLLKIMVEDSQHLRSDSLLLPTDSSNIVS-LAESDERGSNLSGVLSTPAVRHL 119

Query: 212 AKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQ 271
           AK YGI+L D+  TGKDGRVLKEDVLKYA QKG     S+A  +    +     EE    
Sbjct: 120 AKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQ-----EEFSTS 174

Query: 272 TFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD 331
                +   +DKT+PLRGFQR MVKTM+ AAK+PHFHYVEEIN DALV+LKASFQ NN+D
Sbjct: 175 VSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD 234

Query: 332 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           P +KHTFLP LIKSLSMA+SKYP +NSCFNEE+ E+ LKG
Sbjct: 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKG 274

Length = 416

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  192 bits (490), Expect = 1e-57
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 32/281 (11%)

Query: 98  GEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVG 157
           GEG+ E E+++W VK GD ++E QPL  V++DKAT+EI S   G VA+LL   G++V VG
Sbjct: 11  GEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVG 70

Query: 158 ETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDT----------VGGVLATPT 207
             +  +     A    +++       P    +  +                     A+P 
Sbjct: 71  SVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPA 130

Query: 208 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEE 267
           VR LA+  G++L  V  +G  GR+ KEDV   A     A   + A+ +A       GEE 
Sbjct: 131 VRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEER 190

Query: 268 TYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ 326
                            VPL G ++ + K M  +  +IPHF   +E++  AL+ L+   +
Sbjct: 191 -----------------VPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLK 233

Query: 327 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEV 367
                  +K T    LIK++++A+ K+P +N+ ++++++ +
Sbjct: 234 AI----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVL 270

Length = 411

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  180 bits (458), Expect = 1e-51
 Identities = 82/301 (27%), Positives = 133/301 (44%), Gaps = 22/301 (7%)

Query: 85  PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 144
              G+V+V +   GE I E E+++W VK GD +EE Q L  V++DKAT+EI S   G V 
Sbjct: 115 AGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVK 173

Query: 145 QLLHAPGNIVKVGETLLKLVVGDSA---------VPTPSSDVLESVKPPGSENSPDSKLN 195
           ++    G+ V VG  L+ + V  +A             ++        P +  +P +   
Sbjct: 174 EIKVKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAP 233

Query: 196 KDTVGG---VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY--AVQKGAADGPS 250
                      A+P VR LA+  G++L  V  TGK GR+ KEDV  +       AA   +
Sbjct: 234 AAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAA 293

Query: 251 TASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHY 309
            A+ +      LL   +     F E+      +T PL   ++     +  +   IPH   
Sbjct: 294 AAAAAGGGGLGLLPWPKVDFSKFGEI------ETKPLSRIKKISAANLHRSWVTIPHVTQ 347

Query: 310 VEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVIL 369
            +E +   L  L+   +       +K T LP  IK++  A+ ++P  N+  +E+  E+  
Sbjct: 348 FDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTY 407

Query: 370 K 370
           K
Sbjct: 408 K 408

Length = 547

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  169 bits (431), Expect = 5e-49
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 23/285 (8%)

Query: 88  GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147
             +++ +   GE + E  +++W  K GD+++E   L  V++DKAT+E+ +   G +A++L
Sbjct: 1   MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 148 HAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVK-PPGSENSPDSKLNKDTVGGVLATP 206
              G+ V VG  + ++    +  P  +    E     P S  +  +       G VLA+P
Sbjct: 61  VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAA---AGRVLASP 117

Query: 207 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEE 266
            VR LA+  GI+L  V  TG  GR+ K+DV     +K AA   +  + +A       GEE
Sbjct: 118 AVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAA--AAAPAPAAAAPASAAGEE 175

Query: 267 ETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASF 325
           E                 VP+   ++ + + M  + + IPH     E++   L+ L+   
Sbjct: 176 E----------------RVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKL 219

Query: 326 QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
           +       +K TFL  L+K++  A+ K+P +N+  + +  E++  
Sbjct: 220 KEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYH 264

Length = 404

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  113 bits (285), Expect = 2e-27
 Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 29/309 (9%)

Query: 80  ALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRY 139
           A A   A+G+ DV +   G    E E+ +  VK GD++E  Q L  V+ DKA++E+ + +
Sbjct: 197 AAAPAAAAGVKDVNVPDIGGD--EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPF 254

Query: 140 KGKVAQLLHAPGNIVKVGETLLKLVVGDSA---------VPTPSSDVLESVKPPGSENSP 190
            G V ++    G+ VK G  +++  V  +A            P+    ++  P  +  + 
Sbjct: 255 AGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK 314

Query: 191 DSKLNKDTVGG--VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG 248
               ++       V ATP VR LA+ +G+NL  V  TG+ GR+LKEDV  Y   K A   
Sbjct: 315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYV--KDAVKR 372

Query: 249 PSTASVSADCREQLLGE---EETYPQTFAEVKWYPDDKTVPLRGFQ----RTMVKTMSMA 301
              A  +A       G     +     F E+      + V L   Q      + +   M 
Sbjct: 373 AEAAPAAAAAGGGGPGLLPWPKVDFSKFGEI------EEVELGRIQKISGANLHRNWVMI 426

Query: 302 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN 361
             +  F   +    +A  K + +         +K T L  ++K+++ A+ + P  NS  +
Sbjct: 427 PHVTQFDKADITELEAFRKQQNAEAEKR-KLGVKITPLVFIMKAVAAALEQMPRFNSSLS 485

Query: 362 EESLEVILK 370
           E+   + LK
Sbjct: 486 EDGQRLTLK 494

Length = 633

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  112 bits (281), Expect = 3e-27
 Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 26/307 (8%)

Query: 82  ADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKG 141
           A   +SG+ +V +   G  I +  +++  VK GD +   Q L  ++SDKA++E+ +   G
Sbjct: 109 AAGQSSGVQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASG 167

Query: 142 KVAQLLHAPGNIVKVGETLLKLVVGDSAVPT-------------PSSDVLESVKPPGSEN 188
            V  +    G+ V  G+ +L L V  S   T             P++   E    P +  
Sbjct: 168 VVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAK 227

Query: 189 S-PDSKLNKDTVGGVL---ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKG 244
           +   +     T        A P VR LA+ +G++L  V  TG  GR+L+EDV ++ V++ 
Sbjct: 228 AQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRF-VKEP 286

Query: 245 AADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK 303
           +    + A+ +A      L         F EV      + V +   ++     ++     
Sbjct: 287 SVRAQAAAASAAGGAPGALPWPNVDFSKFGEV------EEVDMSRIRKISGANLTRNWTM 340

Query: 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 363
           IPH  + ++ +   +   +           +K T L  L+K+++ A+ K+P  N+  +  
Sbjct: 341 IPHVTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLG 400

Query: 364 SLEVILK 370
             ++ILK
Sbjct: 401 GEQLILK 407

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 92.1 bits (230), Expect = 2e-23
 Identities = 25/74 (33%), Positives = 45/74 (60%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
            ++ +   GE + E  +++W VKEGD +EE   L  V++DKAT+E+ +   G +A++L  
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 150 PGNIVKVGETLLKL 163
            G+ V VG+ +  +
Sbjct: 61  EGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  100 bits (251), Expect = 2e-23
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 2/168 (1%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V++ +    E + E  +  W  K GD ++  + L  +++DK  +E+ +   G ++++L 
Sbjct: 2   MVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILA 61

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
             G+ V VG+ L ++  G +A    ++    +        +  +   + +      +P  
Sbjct: 62  EEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA--LSPAA 119

Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSA 256
           R LA   G++   V  TGK GRV KEDVL       AA     A+  A
Sbjct: 120 RKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPA 167

Length = 407

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 46/288 (15%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLV 164
           L KW  KEGD++     +  +++DKAT+E  +  +G +A++L   G   V V + +  LV
Sbjct: 16  LAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75

Query: 165 --------------VGDSAVPTPSSDVLESVKPPGSENSPDS-------------KLNKD 197
                         +  SA P P    +    PP +     +               +K+
Sbjct: 76  EEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKE 135

Query: 198 TVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGA-ADGPSTASVSA 256
           +   + A+P  + LAK  GI+L  V  +G +GR++K+D+  +  Q  A A+  + A+  A
Sbjct: 136 SGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANQQAAATTPA 195

Query: 257 DCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAK--IPHFHYVEEIN 314
                      +Y             + VPL   ++ + K + + +K  IPH++   E N
Sbjct: 196 TYPAAAPVSTGSY-------------EDVPLSNIRKIIAKRL-LESKQTIPHYYVSIECN 241

Query: 315 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE 362
            D L+ L+       S+   K +    +IK+ ++A+ + P  NS + +
Sbjct: 242 VDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTD 288

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 86.2 bits (213), Expect = 2e-18
 Identities = 75/318 (23%), Positives = 123/318 (38%), Gaps = 57/318 (17%)

Query: 91  DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150
           +V + + GE + E  +  W    GD +E  +PL  V +DK   EI S   G + ++    
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 151 GNIVKVGETLLKLVVGDSAV---------------------PTPSSDVLESVKPPGSENS 189
            + V+VG  L    +GD+                       P P++    +   P +   
Sbjct: 188 DDTVEVGTVLAI--IGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAP 245

Query: 190 PDSKLNK--------DTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241
             +K               G   TP VR LAK  G++L  V  TG  GR+ K+DVL  A 
Sbjct: 246 APAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAK 305

Query: 242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRG-----------F 290
               A   + A  +A             P   A      +  T  LRG            
Sbjct: 306 AAEEARAAAAAPAAA-----------AAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQIT 354

Query: 291 QRTMVKTMSMAAKIPHFHYVEEINCDAL-VKLKASFQNNNSDPNIKHTFLPSLIKSLSMA 349
               ++++  +A++   H V+     AL  + K  F   N    +  TFLP  +++++ A
Sbjct: 355 ADKTIESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNG---VNLTFLPFFVQAVTEA 411

Query: 350 MSKYPFMNSCFNEESLEV 367
           +  +P +N+ +N E+ EV
Sbjct: 412 LKAHPNVNASYNAETKEV 429

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 83.6 bits (207), Expect = 8e-18
 Identities = 60/269 (22%), Positives = 120/269 (44%), Gaps = 19/269 (7%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
           +++ + +  E I E  + +W  K GD ++  + +  +++DK  +E+ S   G + ++L  
Sbjct: 1   IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60

Query: 150 PGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVR 209
            G+ V+ G+ L  L  G+ A   P +   E  K      S  +          L +P  R
Sbjct: 61  EGDTVESGQVLAILEEGNDATAAPPAKSGEE-KEETPAASAAAAPTAAANRPSL-SPAAR 118

Query: 210 NLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETY 269
            LAK +GI+L  V  TG  GRV KED++K      +A  P+ A+ +             +
Sbjct: 119 RLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAK--------APANF 170

Query: 270 PQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN- 328
            +    VK     + +  R     + +  +  A +  F+   E++  A+++L+  ++   
Sbjct: 171 TRPEERVKMTRLRQRIAER-----LKEAQNSTAMLTTFN---EVDMSAVMELRKRYKEEF 222

Query: 329 NSDPNIKHTFLPSLIKSLSMAMSKYPFMN 357
                +K  F+   +K++  A+ ++P +N
Sbjct: 223 EKKHGVKLGFMSFFVKAVVAALKRFPEVN 251

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
            ++  +   GE + E E+++W VKEGD +EE QPL  V++DKAT+EI S   G V ++  
Sbjct: 2   AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKV 60

Query: 149 APGNIVKVGETLLKLVVGDSAVPTP 173
             G+ V VG  L  +    +A    
Sbjct: 61  KVGDTVSVGGLLAVIEAAGAAAAAA 85

Length = 547

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 58/324 (17%)

Query: 70  MVSRCCYSNHALADLPASGIVDVP-LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128
           M S   +S+ +  DLP    + +P L+ T   + E  + +W  KEGD++   + LC V++
Sbjct: 97  MQSARGFSSSS--DLPPHQEIGMPSLSPT---MTEGNIARWLKKEGDKVSPGEVLCEVET 151

Query: 129 DKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLV--------------------VGD 167
           DKAT+E+    +G +A+++   G   +KVGE +   V                       
Sbjct: 152 DKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAP 211

Query: 168 SAVPTPSSDVLESVKPPGSENSPD-SKLNKDTVGG--VLATPTVRNLAKLYGINLYDVDA 224
            A P+P     E V+ P S   P  SK +     G  + A+P  R LA+   + L  +  
Sbjct: 212 KAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKG 271

Query: 225 TGKDGRVLKEDVLKYAVQ--KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDD 282
           TG DGR++K D+  Y     KGA   PST S +                       Y D 
Sbjct: 272 TGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALD-------------------YTDI 312

Query: 283 KTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKA---SFQNNNSDPNIKHTFL 339
               +R  + T  + +     IPH++   +   D L+ L++   S Q  +    I    L
Sbjct: 313 PNTQIR--KVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDL 370

Query: 340 PSLIKSLSMAMSKYPFMNSCFNEE 363
             +IK+ ++A+ K P  NS + ++
Sbjct: 371 --VIKAAALALRKVPQCNSSWTDD 392

Length = 539

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
            ++     GE + E    +W VK GD+++  Q LC V++ K  +EI +   G V ++L  
Sbjct: 1   TEIKSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 150 PGNIVKVGETLLKL 163
            G+ V+VG+ L K+
Sbjct: 60  EGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPSTASVSADCRE 260
           +LATP  R LAK  GI++  +  +G+DG++L EDV  +    K A      ASVS+    
Sbjct: 2   ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSS---- 57

Query: 261 QLLGEEETYPQTFAEVKWYPD-DKTVPLR-GFQRTMVKTMSMAAKIPHFHYVEEINCDAL 318
                 +T     A  K     +K  P+R    R M  + S  A   + + V EI+   L
Sbjct: 58  -AQQAAKTAAPAAAPPKLEGKREKVAPIRKAIARAMTNSWSNVA---YVNLVNEIDMTKL 113

Query: 319 VKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVI 368
             L+ S ++       +K TFLP + K++ +A+ ++P   + ++E + E++
Sbjct: 114 WDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELV 164

Length = 306

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 303 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE 362
            IPHF   +E++  AL+ L+   + +     +K TFL  L+K++++A+ ++P +N+ ++ 
Sbjct: 7   TIPHFTLTDEVDVTALLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPELNASWDG 66

Query: 363 ESLEVILK 370
           ++ E++ K
Sbjct: 67  DA-EIVYK 73

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 53.6 bits (130), Expect = 6e-10
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 200 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238
           G V A+P  R LA   GI+L  V  TG  GR+ KEDVL 
Sbjct: 1   GRVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 22/105 (20%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           ++ VP    G+ I+E  +++W  K GD ++E + +C +++DK +++I +   G + ++  
Sbjct: 46  VIKVP--TMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFA 103

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSK 193
             G+ V+VG  L ++  G +      +    +     +   P + 
Sbjct: 104 EEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAA 148

Length = 418

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159
           G  E E+ +  VK GD +E  Q L  V+ DKA++E+ + + G V ++    G+ V  G  
Sbjct: 114 GSDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSL 173

Query: 160 LLKL-VVGDSAVPTPS 174
           ++   V G++    P+
Sbjct: 174 IMVFEVAGEAPAAAPA 189

Length = 633

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 36/58 (62%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
           ++K  VKEGD++E  QPL  +++ K   E+T+   G V ++L   G+ V+ G+ L+ +
Sbjct: 10  VVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
           + K FV+ GD ++  Q L  +++ K   EI +   G V ++L   G+ V+ G+ L  +
Sbjct: 81  VYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138

Length = 140

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159
           G  E E+ +  VK GD++E  Q L  V+ DKA++E+ S   G V ++    G+ V+ G  
Sbjct: 11  GADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGAL 70

Query: 160 LLKLVV---GDSAVPTPSSDVLESVKPPGS 186
           ++          A P  + +  E+      
Sbjct: 71  IMIFESADGAADAAPAQAEEKKEAAPAAAP 100

Length = 633

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 16/73 (21%), Positives = 38/73 (52%)

Query: 91  DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150
            + +    + + +  ++KW  K GD++++   L  +++ KAT ++ +   G V ++L   
Sbjct: 1   TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60

Query: 151 GNIVKVGETLLKL 163
           G  V+    L+K+
Sbjct: 61  GTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 98  GEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVG 157
           G  + E ++  W V+EGDE+E+   L  V++DK T E+ +   G + + +   G  + VG
Sbjct: 11  GLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVG 70

Query: 158 ETLLKLVVGDSAVP 171
             L   VV D+ V 
Sbjct: 71  ALL--AVVADAEVS 82

Length = 371

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162
           E E+++  VK GD++E  Q L  ++SDKA++E+ S   G + ++    G+ + VG  +  
Sbjct: 13  EGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIAT 72

Query: 163 LVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDV 222
           L VG  A     ++  +   P  +  +P             A P     + +  + + D+
Sbjct: 73  LEVGAGA--QAQAEAKKEAAPAPTAGAPAPAAQAQ------AAPAAGQSSGVQEVTVPDI 124

Query: 223 DATGK 227
               K
Sbjct: 125 GDIEK 129

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 22/40 (55%), Positives = 24/40 (60%)

Query: 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 243
           ATP  R LA   GINLYDV  +G +GRV KEDV  Y    
Sbjct: 8   ATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDTN 47

Length = 347

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLL 161
           E  L KW  KEGD+++    +  +++DKAT+E+ +  +G + ++L   G   VKV  T +
Sbjct: 16  EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVN-TPI 74

Query: 162 KLVVGD----SAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
            +++ +    S      +   E+     +  +  +           A P  
Sbjct: 75  AVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAA 125

Length = 464

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 82   ADLPASGI-VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYK 140
            ADLP     V+   A            K  V+ GD +E  QPL  +++ K  + +++   
Sbjct: 1126 ADLPEGAEQVESEYAGN--------FWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVA 1177

Query: 141  GKVAQLLHAPGNIVKVGETLLKL 163
            GKV ++L  PG++V  G+ +  L
Sbjct: 1178 GKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
           K  VK GD +EE Q +  ++S K  I I +   G V ++    G+ V  G+ LL++
Sbjct: 14  KIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEI 69

Length = 70

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
            V+  +   GE I +  L  +  K G+ ++  + +  +++DK TI+I S   G + + L 
Sbjct: 91  TVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150

Query: 149 APGNIVKVGETLLKLVVGDSAVP--TPSSDVLESVKPPGSENSPDSK 193
             G+ V+ G  +  +   + A    TPS  + E+  P  S  + D +
Sbjct: 151 KEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQ 197

Length = 463

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
           ++K  VKEGD+++    +  +++ K   EI +   G V ++L   G+ V  G+ L+++
Sbjct: 533 VVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590

Length = 592

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	99.79
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.77
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.76
PRK06748	83	hypothetical protein; Validated	99.65
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.63
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.56
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.55
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.51
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.45
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.45
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.44
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.43
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.39
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.36
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.33
PRK07051	80	hypothetical protein; Validated	99.32
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.31
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.3
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.28
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.24
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.21
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.2
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.16
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.15
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.03
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.98
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.95
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.89
PRK12999	1146	pyruvate carboxylase; Reviewed	98.76
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.76
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.57
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.3
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.24
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.99
PRK09783	409	copper/silver efflux system membrane fusion protei	97.97
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	97.96
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.94
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.93
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.92
PRK00624	114	glycine cleavage system protein H; Provisional	97.86
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.81
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.81
PRK13380	144	glycine cleavage system protein H; Provisional	97.78
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	97.69
PRK01202	127	glycine cleavage system protein H; Provisional	97.68
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.68
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.67
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.66
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.62
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.61
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.51
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.46
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.35
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.32
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.31
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.31
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.29
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.03
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.84
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.79
PRK12784	84	hypothetical protein; Provisional	96.72
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	96.52
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.49
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	96.48
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.35
PRK06748	83	hypothetical protein; Validated	96.14
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	96.05
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.01
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.84
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	95.78
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	95.58
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	95.47
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	95.42
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	95.26
PRK07051	80	hypothetical protein; Validated	95.08
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.07
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.01
COG3608	331	Predicted deacylase [General function prediction o	94.97
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	94.8
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	94.61
PF13437	105	HlyD_3: HlyD family secretion protein	94.53
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	94.44
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	93.93
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.85
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	93.84
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	93.33
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.11
PRK10476	346	multidrug resistance protein MdtN; Provisional	92.92
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	92.81
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	92.75
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	92.69
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	92.59
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	92.19
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	92.07
PRK13757	219	chloramphenicol acetyltransferase; Provisional	92.02
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	91.95
PRK09859	385	multidrug efflux system protein MdtE; Provisional	91.86
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	91.49
PRK11578	370	macrolide transporter subunit MacA; Provisional	91.42
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	91.35
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	91.34
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	91.09
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.07
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	90.89
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	90.79
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	90.69
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	90.5
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	90.48
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	90.33
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	90.07
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	90.04
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	90.02
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	89.98
PRK15136	390	multidrug efflux system protein EmrA; Provisional	89.9
PF13437	105	HlyD_3: HlyD family secretion protein	89.89
PRK05035	695	electron transport complex protein RnfC; Provision	89.85
PRK03598	331	putative efflux pump membrane fusion protein; Prov	89.77
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	89.76
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	89.53
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	89.23
COG4072	161	Uncharacterized protein conserved in archaea [Func	89.09
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	88.66
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	88.31
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	87.33
PRK14042	596	pyruvate carboxylase subunit B; Provisional	87.2
PRK09783	409	copper/silver efflux system membrane fusion protei	87.18
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	87.07
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	87.05
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	86.76
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	86.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	85.94
PRK09439	169	PTS system glucose-specific transporter subunit; P	85.71
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	85.56
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	85.39
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	85.22
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	85.18
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	85.01
COG2190	156	NagE Phosphotransferase system IIA components [Car	83.95
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	83.54
PRK09282	592	pyruvate carboxylase subunit B; Validated	83.34
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	83.3
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	82.99
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	82.83
PRK14040	593	oxaloacetate decarboxylase; Provisional	82.6
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	82.11
COG2190	156	NagE Phosphotransferase system IIA components [Car	81.49
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	81.1
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	80.74
PRK09439	169	PTS system glucose-specific transporter subunit; P	80.12

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.8e-59  Score=447.22  Aligned_cols=332  Identities=47%  Similarity=0.677  Sum_probs=263.3

Q ss_pred             ccccchhccCCCCCceeeeeecccccccCCCCCCCCCCCCCceeeeeeecccccccccccccccCCCccccccccccccc
Q 017418            2 MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHAL   81 (372)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   81 (372)
                      |+++|+||++      ++++   +. +.|          +|.|+...+...++.++.++   .+.|.. ..|.||+.++.
T Consensus         1 m~A~rllrt~------s~~~---~~-~~C----------v~~~~~~~~~~h~skp~~v~---l~~~~~-~~~s~~~~~~~   56 (474)
T KOG0558|consen    1 MMARRLLRTH------SRLS---SS-SVC----------VPEYFSLSSSLHVSKPFFVT---LMKWGG-GSRSWFSNEAM   56 (474)
T ss_pred             ChhHHhhhhc------cccc---cc-chh----------HHHHHhhccCccccCcceEE---EeccCC-ccccccchhhh
Confidence            8899999999      4431   11 223          35788887888888888874   678886 78899999998


Q ss_pred             cCCCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418           82 ADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL  161 (372)
Q Consensus        82 ~~~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la  161 (372)
                      +......++.|+|-++||++.|.+|.+|+|+|||+|++.|.||||++||++++|++.++|+|++|+...+|.+.||++|.
T Consensus        57 ~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lv  136 (474)
T KOG0558|consen   57 ATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLV  136 (474)
T ss_pred             hcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCccee
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHH
Q 017418          162 KLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV  241 (372)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~  241 (372)
                      .++.++.+.......+.+.....+.      ........+.++||++|+||+|+||||+.|+|||++|||+|+||++|+.
T Consensus       137 d~eve~~~ds~e~s~es~~vs~~~~------~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~  210 (474)
T KOG0558|consen  137 DLEVEDSQDSPEDSDESPAVSLGES------KQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLG  210 (474)
T ss_pred             eeeeccCcCCcccCCccccccCCCC------chhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhc
Confidence            9998775443222111110000000      0011122457899999999999999999999999999999999999997


Q ss_pred             hcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHH
Q 017418          242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKL  321 (372)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~l  321 (372)
                      +......+..+......+       .+.|...+ ......++.+|+.|++|+|.+.|+++..||||.+.+|||||.|++|
T Consensus       211 q~pg~~~~~~~~~~a~~~-------~~~ps~~a-~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLvkl  282 (474)
T KOG0558|consen  211 QVPGFVTDPSPSEHAVIP-------GPSPSTKA-SSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLVKL  282 (474)
T ss_pred             cCCCCccCCCCceeecCC-------CCCCcccc-cCcccccceeechhHHHHHHHHHHHHhcCCccccccccChHHHHHH
Confidence            642211111110000000       00111011 1112347889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          322 KASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       322 R~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      |+.||...++.|+|||||+|||||+++||.+||.+|+++|.+..+|++|+
T Consensus       283 r~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~  332 (474)
T KOG0558|consen  283 RQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKG  332 (474)
T ss_pred             HHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhc
Confidence            99999887888999999999999999999999999999999999999985

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=8.6e-53  Score=423.92  Aligned_cols=263  Identities=21%  Similarity=0.386  Sum_probs=199.9

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  169 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~  169 (372)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.+++.
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~   82 (407)
T PRK05704          3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA   82 (407)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999865432


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCC
Q 017418          170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~  249 (372)
                      ..........++..+...+..+..  ......+.+||+||+||+|+||||+.|+|||++|||+++||++|+......+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  160 (407)
T PRK05704         83 GAAAAAAAAAAAAAAAPAQAQAAA--AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA  160 (407)
T ss_pred             cccCCCCCCCCCCCCCCCCCCCCc--cCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence            111000000000000000000000  011123679999999999999999999999999999999999997421100000


Q ss_pred             CCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhcc
Q 017418          250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNN  328 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~  328 (372)
                      +..     .. .     ...+.    ......++.+||++|||+|+++|++| +++||||++.|||+++|+++|+++|+.
T Consensus       161 ~~~-----~~-~-----~~~~~----~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~  225 (407)
T PRK05704        161 PAA-----AA-P-----AAAPA----PLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDA  225 (407)
T ss_pred             CCC-----CC-C-----cCCCc----cccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhh
Confidence            000     00 0     00000    00011245689999999999999999 489999999999999999999999976


Q ss_pred             CC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          329 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       329 ~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      +. +.|+|+||++||+||+++||++||.||++|+++  +|++++
T Consensus       226 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~  267 (407)
T PRK05704        226 FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHN  267 (407)
T ss_pred             hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCC--eEEEcC
Confidence            64 458999999999999999999999999999864  687764

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=2.7e-52  Score=419.63  Aligned_cols=261  Identities=21%  Similarity=0.417  Sum_probs=199.5

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  169 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~  169 (372)
                      ++|+||++|++|++|+|++|+|++||.|++||+||+|||||+.++|+|+++|+|.++++++|+.|++|++|++|+.+++.
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA   80 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999865322


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCC
Q 017418          170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP  249 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~  249 (372)
                      .+........+.......+..+..  ....+.+.+||+||+||+|+||||+.|+|||++|||+++||++|+......+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  158 (403)
T TIGR01347        81 TAAPPAKSGEEKEETPAASAAAAP--TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAP  158 (403)
T ss_pred             cccccccccCCCCCCCCCCCCCCC--cCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCC
Confidence            110000000000000000000000  011234679999999999999999999999999999999999997421100000


Q ss_pred             CCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhcc
Q 017418          250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNN  328 (372)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~  328 (372)
                      ..      ..    .  .+.+.     .....++.+||++|||+||++|++|+ ++||||++.|+|+++|+++|+++|+.
T Consensus       159 ~~------~~----~--~~~~~-----~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~  221 (403)
T TIGR01347       159 AP------AA----A--AKAPA-----NFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE  221 (403)
T ss_pred             CC------Cc----c--cCCcc-----ccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhh
Confidence            00      00    0  00000     00112456899999999999999995 89999999999999999999999976


Q ss_pred             CC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          329 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       329 ~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      +. ++|+|+||++||+||++.||++||.||++|+++  +|++++
T Consensus       222 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~  263 (403)
T TIGR01347       222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGD--DIVYKD  263 (403)
T ss_pred             hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCC--EEEEcC
Confidence            64 458999999999999999999999999999864  688764

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=7.8e-52  Score=434.17  Aligned_cols=278  Identities=24%  Similarity=0.349  Sum_probs=203.5

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      .++|.||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|++|+.+++
T Consensus       135 ~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  214 (590)
T TIGR02927       135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGA  214 (590)
T ss_pred             ceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999975432


Q ss_pred             CCCC-----CCC-C------CCCC--CCCC--CCCC---C----CC----CCCCC-C-CCCCccCChHHHHHHHHhCCCC
Q 017418          169 AVPT-----PSS-D------VLES--VKPP--GSEN---S----PD----SKLNK-D-TVGGVLATPTVRNLAKLYGINL  219 (372)
Q Consensus       169 ~~~~-----~~~-~------~~~~--~~~~--~~~~---~----~~----~~~~~-~-~~~~~~asP~aR~lA~e~gIdl  219 (372)
                      ..+.     ... .      .+.+  ...+  ...+   .    ..    ..... . ...++++||+||+||+||||||
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl  294 (590)
T TIGR02927       215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL  294 (590)
T ss_pred             ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence            2110     000 0      0000  0000  0000   0    00    00000 0 1124689999999999999999


Q ss_pred             ccccCCCCCCceehhhHHHHHHhcCCC-CCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHH
Q 017418          220 YDVDATGKDGRVLKEDVLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTM  298 (372)
Q Consensus       220 ~~V~GTG~~GrI~~~DV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M  298 (372)
                      +.|+|||++|||+++||++|+...... ..+....... ..... ......+  .+ ......++.+||++|||+||++|
T Consensus       295 ~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~-~~~~~~~~~~pls~~rk~ia~~m  369 (590)
T TIGR02927       295 NSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAA-APAAA-AAASASP--AP-AKAHLRGTTQKANRIREITAKKT  369 (590)
T ss_pred             HHCCCCCCCCeEeHHHHHHHHhcccccccccccccccc-Ccccc-ccccCCC--cc-ccccccCceeeccHHHHHHHHHH
Confidence            999999999999999999997532110 1111000000 00000 0000000  00 00011245689999999999999


Q ss_pred             Hhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          299 SMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       299 ~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      ++|+ ++||||+++|||||+|++||+++|+.+. ++|+|||||+||+|||+.||++||.||++|++++++|+||+
T Consensus       370 ~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~  444 (590)
T TIGR02927       370 REALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHA  444 (590)
T ss_pred             HHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeC
Confidence            9995 7999999999999999999999997653 45899999999999999999999999999998777899875

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=1.2e-51  Score=425.02  Aligned_cols=277  Identities=22%  Similarity=0.368  Sum_probs=207.6

Q ss_pred             ccccccccccccccCCCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418           69 SMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH  148 (372)
Q Consensus        69 ~~~~r~~~~~~~~~~~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~  148 (372)
                      +.+.+++|++.+  ++|  ..++|.||+||++|+||+|++|+|++||.|++||+||+|||||++++++++++|+|.+|++
T Consensus        96 ~~~~~~~~~~~~--~~~--~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~  171 (539)
T PLN02744         96 QMQSARGFSSSS--DLP--PHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK  171 (539)
T ss_pred             cccccccccccc--cCC--CCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEe
Confidence            556667777765  333  3578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-eEecccEEEEEecCCCCCC------C-C--CCCCCC---CCC-CCCC---CCCC-CC--CCC----CCCCCCccC
Q 017418          149 APGN-IVKVGETLLKLVVGDSAVP------T-P--SSDVLE---SVK-PPGS---ENSP-DS--KLN----KDTVGGVLA  204 (372)
Q Consensus       149 ~eg~-~v~vG~~la~i~~~~~~~~------~-~--~~~~~~---~~~-~~~~---~~~~-~~--~~~----~~~~~~~~a  204 (372)
                      ++|+ .|++|++|+++..+++..+      + .  .+..+.   .+. +...   .+.. +.  ...    ......+++
T Consensus       172 ~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~A  251 (539)
T PLN02744        172 GDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFA  251 (539)
T ss_pred             cCCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccC
Confidence            9996 7999999999854322110      0 0  000000   000 0000   0000 00  000    001123679


Q ss_pred             ChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcc
Q 017418          205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKT  284 (372)
Q Consensus       205 sP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (372)
                      ||+||+||+|+||||+.|+|||++|||+++||++|+......  +..+ .   ..          +.    ......++.
T Consensus       252 SP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~--~~~~-~---~~----------~~----~~~~~~~~~  311 (539)
T PLN02744        252 SPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKG--ATAP-P---ST----------DS----KAPALDYTD  311 (539)
T ss_pred             CchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccc--cCCC-C---Cc----------cc----CCCCCcccc
Confidence            999999999999999999999999999999999997431110  0000 0   00          00    000012356


Q ss_pred             cccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeC
Q 017418          285 VPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE  362 (372)
Q Consensus       285 ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~  362 (372)
                      +||++|||+||++|++| +++||||++.|||+|+|+++|+++|+.++ ..|+||||++||+|||++||++||.||++|++
T Consensus       312 vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~  391 (539)
T PLN02744        312 IPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTD  391 (539)
T ss_pred             ccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeecc
Confidence            89999999999999999 58999999999999999999999997654 45899999999999999999999999999986


Q ss_pred             CCCEEEEcC
Q 017418          363 ESLEVILKG  371 (372)
Q Consensus       363 ~~~eIv~~~  371 (372)
                      +  +|++++
T Consensus       392 ~--~i~~~~  398 (539)
T PLN02744        392 D--YIRQYH  398 (539)
T ss_pred             C--cEEEeC
Confidence            4  687764

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=9.7e-52  Score=415.93  Aligned_cols=262  Identities=27%  Similarity=0.478  Sum_probs=205.9

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      .++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||++|+|.+|++++|++|++|++|++|+.+++
T Consensus         2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~   81 (404)
T COG0508           2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA   81 (404)
T ss_pred             CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCC
Q 017418          169 AVPTPSSDVLES-VKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD  247 (372)
Q Consensus       169 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~  247 (372)
                      ..++.....+.+ ...+...+.. ..  ........+||++|+||+|+||||+.+.|||++|||+++|++.+......  
T Consensus        82 ~~~a~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~--  156 (404)
T COG0508          82 DAPAAAEAPPEPAAAAPASAPAT-AA--SAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAA--  156 (404)
T ss_pred             cccccCcccCCccccCcCcccCc-cc--cccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccc--
Confidence            421111000000 0000000000 00  01114578999999999999999999999999999999999998754200  


Q ss_pred             CCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhh
Q 017418          248 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ  326 (372)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk  326 (372)
                       ++....   .         ..+   ........++++||++|||.|+++|.+| .++||+|++.++|++.|++||++++
T Consensus       157 -~~~~~~---~---------~~~---~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~  220 (404)
T COG0508         157 -AAAAPA---P---------AAA---APASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLK  220 (404)
T ss_pred             -cccccc---c---------ccC---CcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhh
Confidence             000000   0         000   0001234567899999999999999999 5899999999999999999999999


Q ss_pred             ccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          327 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       327 ~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      ..++..|+||||++||+||++.||++||.+|++|+++..+|+||+
T Consensus       221 ~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~  265 (404)
T COG0508         221 EEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHK  265 (404)
T ss_pred             hhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEec
Confidence            987655999999999999999999999999999986433788875

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=6.8e-51  Score=411.37  Aligned_cols=274  Identities=64%  Similarity=0.943  Sum_probs=201.8

Q ss_pred             EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCCCC
Q 017418           92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP  171 (372)
Q Consensus        92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~~~  171 (372)
                      |+||+||++|+||+|++|+|++||.|++||+||++||||+.++++|+.+|+|.++++++|+.|++|++|+.|+.+++...
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~   80 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL   80 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999975443211


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCC
Q 017418          172 TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST  251 (372)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~  251 (372)
                      .....+++....+...+..+... ......+++||+||+||++|||||+.|+|||++|||+++||++|+........+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~  159 (416)
T PLN02528         81 RSDSLLLPTDSSNIVSLAESDER-GSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSS  159 (416)
T ss_pred             cccCCCCCCCCccCCCCCCCCcc-ccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccc
Confidence            10000000000000000000000 11112357999999999999999999999999999999999999753211000100


Q ss_pred             cccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCCC
Q 017418          252 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD  331 (372)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~  331 (372)
                      .........  .   ...............++.+||++|||+||++|++|+++||||++.|||+++|+++|+++++..+.
T Consensus       160 ~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~  234 (416)
T PLN02528        160 AEEATIAEQ--E---EFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD  234 (416)
T ss_pred             cccccCCcc--c---cccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhh
Confidence            000000000  0   00000000000111246789999999999999999999999999999999999999999976556


Q ss_pred             CCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          332 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       332 ~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      +|+||||++||+||++.||++||.||++|++++.+|++++
T Consensus       235 ~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~  274 (416)
T PLN02528        235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKG  274 (416)
T ss_pred             cCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeC
Confidence            6899999999999999999999999999998777788864

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2.7e-50  Score=419.51  Aligned_cols=275  Identities=23%  Similarity=0.382  Sum_probs=202.7

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      .++|+||++|+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.+++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS  194 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999999999999975442


Q ss_pred             CCCCC---CCCC---CCCCC-CC--CCCCC--CCCCCC---C-C-CCCCc-cCChHHHHHHHHhCCCCccccCCCCCCce
Q 017418          169 AVPTP---SSDV---LESVK-PP--GSENS--PDSKLN---K-D-TVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRV  231 (372)
Q Consensus       169 ~~~~~---~~~~---~~~~~-~~--~~~~~--~~~~~~---~-~-~~~~~-~asP~aR~lA~e~gIdl~~V~GTG~~GrI  231 (372)
                      .....   ....   +.+.. .+  ...+.  .+....   . . ...++ ++||+||+||+||||||+.|+|||++|||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI  274 (546)
T TIGR01348       195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI  274 (546)
T ss_pred             CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence            21100   0000   00000 00  00000  000000   0 0 11134 69999999999999999999999999999


Q ss_pred             ehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEe
Q 017418          232 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYV  310 (372)
Q Consensus       232 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~  310 (372)
                      +++||++|+..... ..+..+... .....   .....+.  ........++.+||++|||.|+++|++| +++||||++
T Consensus       275 ~~~DV~~~~~~~~~-~~~~~~~~~-~~~~~---~~~~~~~--~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~  347 (546)
T TIGR01348       275 LREDVQRFVKEPSV-RAQAAAASA-AGGAP---GALPWPN--VDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF  347 (546)
T ss_pred             eHHHHHHHhhcccc-ccCcccccc-cCCcc---ccCCCcc--ccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence            99999999743211 011100000 00000   0000000  0000011246689999999999999999 589999999


Q ss_pred             eeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          311 EEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       311 ~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      .|+|||+|+++|+++|+.++.+|+||||++||+|||+.||++||.||++|++++++|++++
T Consensus       348 ~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~  408 (546)
T TIGR01348       348 DKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKK  408 (546)
T ss_pred             EEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeC
Confidence            9999999999999999876667899999999999999999999999999997767888874

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=2.2e-50  Score=399.43  Aligned_cols=268  Identities=23%  Similarity=0.353  Sum_probs=205.6

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCC-CeEecccEEEEEecC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLVVG  166 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg-~~v~vG~~la~i~~~  166 (372)
                      .++.|.||.|+.+|++|.|++|.++|||.+.+||+||||||||++++++++++|+|.+|+++|| ..|+||.+||+|.+.
T Consensus        37 ~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~  116 (470)
T KOG0557|consen   37 AHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVED  116 (470)
T ss_pred             cceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecc
Confidence            5688999999999999999999999999999999999999999999999999999999999999 799999999999876


Q ss_pred             CCCCCCC---------CC----CCCCCCCCCC---CCCCCC-----CCCCC-CCCCCccCChHHHHHHHHhCCCCccccC
Q 017418          167 DSAVPTP---------SS----DVLESVKPPG---SENSPD-----SKLNK-DTVGGVLATPTVRNLAKLYGINLYDVDA  224 (372)
Q Consensus       167 ~~~~~~~---------~~----~~~~~~~~~~---~~~~~~-----~~~~~-~~~~~~~asP~aR~lA~e~gIdl~~V~G  224 (372)
                      +++....         ..    .++.++.+..   ..|..+     +.+.. ...+++.+||++|+||.|+|+|++.|+|
T Consensus       117 e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i~g  196 (470)
T KOG0557|consen  117 EDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPG  196 (470)
T ss_pred             cccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccCcC
Confidence            5432110         00    0000000000   011000     00001 1124688999999999999999999999


Q ss_pred             CCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-cc
Q 017418          225 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK  303 (372)
Q Consensus       225 TG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~  303 (372)
                      |||+|||++.||++|+...+.+.+...++.   .+       +.++.  +.......++.+|++.||+.|++||.+| ++
T Consensus       197 tGP~Gri~k~Di~~~v~~~~~k~~~~~~~~---~~-------~~~~~--a~~~~~~~~~diP~s~mr~viakrl~eSk~~  264 (470)
T KOG0557|consen  197 TGPHGRILKGDIEKHVGSGKKKSAKAPKAS---AP-------PPAPA--APPVSLPGYEDIPVSNMRRVIAKRLLESKQT  264 (470)
T ss_pred             cCCCceeehhhHHHhhcccccccccCCCcc---CC-------CcCcc--CCcCCCCcccccccchhhhhhhhhhhhhhcC
Confidence            999999999999999865332111111000   00       00000  0011122367899999999999999999 69


Q ss_pred             ccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEc
Q 017418          304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK  370 (372)
Q Consensus       304 iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~  370 (372)
                      |||||++.+|+++.|+++|+++|  +++.+.++|++|||+||+++||+++|.+|++|.++ +.|.+.
T Consensus       265 IPh~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~  328 (470)
T KOG0557|consen  265 IPHYYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQL  328 (470)
T ss_pred             CCeEEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCC-cccccc
Confidence            99999999999999999999999  56778899999999999999999999999999986 556554

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=8.9e-49  Score=397.99  Aligned_cols=265  Identities=23%  Similarity=0.340  Sum_probs=196.9

Q ss_pred             EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe-EecccEEEEEecCCCCC
Q 017418           92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGDSAV  170 (372)
Q Consensus        92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~-v~vG~~la~i~~~~~~~  170 (372)
                      |.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+. |++|++|++|+.+++..
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~   81 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV   81 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence            78999999999999999999999999999999999999999999999999999999999999 99999999997543221


Q ss_pred             C-C--------C-CCCCCC--C-CCC---CCC--CCCCC--CCC--CC---C-CCCCccCChHHHHHHHHhCCCCccccC
Q 017418          171 P-T--------P-SSDVLE--S-VKP---PGS--ENSPD--SKL--NK---D-TVGGVLATPTVRNLAKLYGINLYDVDA  224 (372)
Q Consensus       171 ~-~--------~-~~~~~~--~-~~~---~~~--~~~~~--~~~--~~---~-~~~~~~asP~aR~lA~e~gIdl~~V~G  224 (372)
                      . .        . ....+.  . ...   +..  .+...  ...  ..   . ....+++||+||+||+||||||+.|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g  161 (435)
T TIGR01349        82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG  161 (435)
T ss_pred             ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence            1 0        0 000000  0 000   000  00000  000  00   0 111367999999999999999999999


Q ss_pred             CCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-cc
Q 017418          225 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK  303 (372)
Q Consensus       225 TG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~  303 (372)
                      ||++|||+++||++|+..... ..+.....   ..   .. ....+    .......++.+||++|||+|+++|++| ++
T Consensus       162 tG~~GrI~~~DV~~~~~~~~~-~~~~~~~~---~~---~~-~~~~~----~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~  229 (435)
T TIGR01349       162 SGPNGRIVKKDIESFVPQSPA-SANFQAAA---TT---PA-TKKAA----APVSTGSYEDVPLSNIRKIIAKRLLESKQT  229 (435)
T ss_pred             CCCCCceeHHHHHHHHhcccc-cCCCcccc---cc---cc-ccccC----CCccCCcceeecccHHHHHHHHHHHHHHhh
Confidence            999999999999999743111 01100000   00   00 00000    000111245689999999999999999 58


Q ss_pred             ccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       304 iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      +||||++.||||++|+++|+++++.+.. |+||||++||+||+++||++||.||++|++  ++|++++
T Consensus       230 ip~~~~~~evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~--~~i~~~~  294 (435)
T TIGR01349       230 IPHYYVSIECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTD--NFIRRYK  294 (435)
T ss_pred             CCeEEEEEEEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeC--CeEEEeC
Confidence            9999999999999999999999976544 889999999999999999999999999986  3688764

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=1.1e-47  Score=406.30  Aligned_cols=275  Identities=26%  Similarity=0.391  Sum_probs=200.7

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ..++|+||++|  |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+.++
T Consensus       205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~  282 (633)
T PRK11854        205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG  282 (633)
T ss_pred             CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            45799999999  9999999999999999999999999999999999999999999999999999999999999997543


Q ss_pred             CCCCCCC-C---CCCCCC--CCCCCCCCCCCCC-C----CCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhH
Q 017418          168 SAVPTPS-S---DVLESV--KPPGSENSPDSKL-N----KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV  236 (372)
Q Consensus       168 ~~~~~~~-~---~~~~~~--~~~~~~~~~~~~~-~----~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV  236 (372)
                      +...... +   ..+.+.  ..+...+...... .    .....++++||+||+||++|||||+.|+|||++|||+++||
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV  362 (633)
T PRK11854        283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDV  362 (633)
T ss_pred             CCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHH
Confidence            3211000 0   000000  0000000000000 0    01112467999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCC--CCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeee
Q 017418          237 LKYAVQKGAAD--GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEI  313 (372)
Q Consensus       237 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~ev  313 (372)
                      ++|+.......  .+.+...   ... .+ .....+.  ........++.+||++|||+|+++|++|+ ++||||++.++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~~~~--~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~ev  435 (633)
T PRK11854        363 QAYVKDAVKRAEAAPAAAAA---GGG-GP-GLLPWPK--VDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKA  435 (633)
T ss_pred             HHHhhccccccccCCccccc---ccc-cc-ccccccc--ccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEE
Confidence            99974321100  0100000   000 00 0000000  00000112356899999999999999994 89999999999


Q ss_pred             echHHHHHHHHhhccC-C-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          314 NCDALVKLKASFQNNN-S-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       314 Dvt~L~~lR~~lk~~~-~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      |+|+|+++|+++++.. . ..|+|+||++||+||+++||++||.||++|++++++|++++
T Consensus       436 D~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~  495 (633)
T PRK11854        436 DITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKK  495 (633)
T ss_pred             EcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEec
Confidence            9999999999998643 2 35899999999999999999999999999987667888874

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.6e-47  Score=399.57  Aligned_cols=278  Identities=29%  Similarity=0.471  Sum_probs=202.6

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      .+.+|+||+||+ |++|+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|++|++|++|...+
T Consensus       118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~  196 (547)
T PRK11855        118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA  196 (547)
T ss_pred             CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            357999999999 9999999999999999999999999999999999999999999999999999999999999997653


Q ss_pred             CCC-CC--CCCCCCC-C-CCCCCCCCCC----CCCC-C-CCCCCCc-cCChHHHHHHHHhCCCCccccCCCCCCceehhh
Q 017418          168 SAV-PT--PSSDVLE-S-VKPPGSENSP----DSKL-N-KDTVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRVLKED  235 (372)
Q Consensus       168 ~~~-~~--~~~~~~~-~-~~~~~~~~~~----~~~~-~-~~~~~~~-~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~D  235 (372)
                      +.. ..  .....+. . .......+..    .... . ....++. ++||+||+||++|||||+.|+|||++|||+++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D  276 (547)
T PRK11855        197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKED  276 (547)
T ss_pred             CccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHH
Confidence            211 00  0000000 0 0000000000    0000 0 0011234 799999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC-CCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeee
Q 017418          236 VLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEI  313 (372)
Q Consensus       236 V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~ev  313 (372)
                      |++|+...... ..+..... ....    ....+.+...........++.+||++|||+||++|++|+ ++||||++.++
T Consensus       277 V~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~ev  351 (547)
T PRK11855        277 VQAFVKGAMSAAAAAAAAAA-AAGG----GGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEA  351 (547)
T ss_pred             HHHHhhcccccccccccccc-cccc----ccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence            99997432110 01100000 0000    000000000000000112457899999999999999995 89999999999


Q ss_pred             echHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          314 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       314 Dvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      |+++|+++|+++++.+++.|+|+||++||+||+++||++||.||++|++++++|+|++
T Consensus       352 d~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~  409 (547)
T PRK11855        352 DITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKK  409 (547)
T ss_pred             EChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeC
Confidence            9999999999999876666899999999999999999999999999987666788854

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=2.1e-44  Score=364.44  Aligned_cols=259  Identities=30%  Similarity=0.529  Sum_probs=195.5

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC-
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS-  168 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~-  168 (372)
                      ++|+||++|++|++|+|++|+|++||.|++||+||+||+||+.++++||++|+|.++++++|+.|++|++|+.|...++ 
T Consensus         3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~   82 (411)
T PRK11856          3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA   82 (411)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999986543 


Q ss_pred             CCCCCC---CCCCCCCCCCCCCC---CCCCC---CCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHH
Q 017418          169 AVPTPS---SDVLESVKPPGSEN---SPDSK---LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY  239 (372)
Q Consensus       169 ~~~~~~---~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~  239 (372)
                      ..+...   ...+.........+   ..+..   ..........+||++|+||++|||||+.|+|||++|||+++||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~~  162 (411)
T PRK11856         83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAA  162 (411)
T ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHHH
Confidence            211100   00000000000000   00000   0000111246899999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHH
Q 017418          240 AVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDAL  318 (372)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L  318 (372)
                      +......+.+...     .+    .   ..+.     .....++.+||++|||.|+++|.+| +++|||+++.+||+++|
T Consensus       163 ~~~~~~~~~~~~~-----~~----~---~~~~-----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l  225 (411)
T PRK11856        163 AAAAAPAAAAAAA-----AA----A---APPA-----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL  225 (411)
T ss_pred             HhcccccCCCCCC-----CC----C---CCCc-----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence            7432110000000     00    0   0000     0011356789999999999999999 59999999999999999


Q ss_pred             HHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          319 VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       319 ~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      +++|+++++.    ++|+||++||+||+++||++||.||++|+++  +|++++
T Consensus       226 ~~~~k~~~~~----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~--~i~~~~  272 (411)
T PRK11856        226 LALRKQLKAI----GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKK  272 (411)
T ss_pred             HHHHHHHHhh----ccCccHHHHHHHHHHHHHHhCcHhheEEeCC--EEEEcC
Confidence            9999999753    3799999999999999999999999999865  577654

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=4.5e-42  Score=347.78  Aligned_cols=243  Identities=16%  Similarity=0.305  Sum_probs=171.8

Q ss_pred             cccccccccCCCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe
Q 017418           74 CCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI  153 (372)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~  153 (372)
                      +|++..+.   ....+++|+||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++||.
T Consensus        79 ~~~~~~~~---~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~  155 (463)
T PLN02226         79 RWVRPFSS---ESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT  155 (463)
T ss_pred             hccccccc---ccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE
Confidence            45555432   233457999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceeh
Q 017418          154 VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLK  233 (372)
Q Consensus       154 v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~  233 (372)
                      |++|++|++|+.+++..+.... ....+......+..+ .. .....++.++|++|+.+          .++|+.+.   
T Consensus       156 V~vG~~L~~I~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~v~asp~~r~~~----------~~~~~~~~---  219 (463)
T PLN02226        156 VEPGTKVAIISKSEDAASQVTP-SQKIPETTDPKPSPP-AE-DKQKPKVESAPVAEKPK----------APSSPPPP---  219 (463)
T ss_pred             ecCCCEEEEeccCCccccccCc-cCCCCCCCCCCCCCc-cc-cccccCCCcchhhcccc----------CCCCCCCC---
Confidence            9999999999754321110000 000000000000000 00 00011344555554321          11221110   


Q ss_pred             hhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeee
Q 017418          234 EDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEE  312 (372)
Q Consensus       234 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~e  312 (372)
                                      ....           .   .+.    ......++.+||++|||+||++|++| +++||||++.|
T Consensus       220 ----------------~~~~-----------~---~~~----~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~e  265 (463)
T PLN02226        220 ----------------KQSA-----------K---EPQ----LPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNE  265 (463)
T ss_pred             ----------------cccc-----------c---Ccc----cccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence                            0000           0   000    00011245689999999999999999 58999999999


Q ss_pred             eechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          313 INCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       313 vDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      ||+|+|+++|+++|+.++ ++|+|+||++||+||+++||++||.+|++|+++  +|++++
T Consensus       266 vDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~  323 (463)
T PLN02226        266 VDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRD  323 (463)
T ss_pred             EEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCC--EEEEeC
Confidence            999999999999998664 458999999999999999999999999999864  688764

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=5.3e-41  Score=337.55  Aligned_cols=234  Identities=18%  Similarity=0.378  Sum_probs=171.7

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      .+.+|+||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+..+
T Consensus        43 ~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~  122 (418)
T PTZ00144         43 SIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG  122 (418)
T ss_pred             cceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999997654


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCC
Q 017418          168 SAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD  247 (372)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~  247 (372)
                      +......  .......+..  ..+.   .    .....|.+++++.++++++..+..               . .  .  
T Consensus       123 ~~~~~~~--~~~~~~~~~~--~~~~---~----~~~~~p~~~~~a~~~~~a~p~vr~---------------~-~--~--  171 (418)
T PTZ00144        123 APPAAAP--AAAAAAKAEK--TTPE---K----PKAAAPTPEPPAASKPTPPAAAKP---------------P-E--P--  171 (418)
T ss_pred             ccccccc--cccCCCCCcc--CCCC---C----CCCCCCccccccccccCCchhhhc---------------c-c--c--
Confidence            3211000  0000000000  0000   0    001135566666666666555521               0 0  0  


Q ss_pred             CCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhh
Q 017418          248 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ  326 (372)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk  326 (372)
                      ++.....   .          .+.    ......++.+||++|||+||++|++| ++|||||++.|||+++|+++|++++
T Consensus       172 ~~~~~~~---~----------~~~----~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~  234 (418)
T PTZ00144        172 APAAKPP---P----------TPV----ARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYK  234 (418)
T ss_pred             CCCCCCC---C----------CCc----cccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHH
Confidence            0000000   0          000    00001234589999999999999999 4899999999999999999999999


Q ss_pred             ccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          327 NNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       327 ~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      +.+. ++|+|+||++||+||++.||++||.+|++|+++  +|++++
T Consensus       235 ~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~--~i~~~~  278 (418)
T PTZ00144        235 DDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD--EIVYRN  278 (418)
T ss_pred             hhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC--EEEEec
Confidence            7664 458999999999999999999999999999865  687764

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=4.2e-40  Score=315.95  Aligned_cols=247  Identities=17%  Similarity=0.326  Sum_probs=171.3

Q ss_pred             CCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           85 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        85 ~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .+.+++++..|.++|+++||.|.+|++++||.|+++|.||+|||||.+++|.||.+|+|.++++++||+|.+|+.|+.|.
T Consensus        68 ~~ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~  147 (457)
T KOG0559|consen   68 RSTSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKIS  147 (457)
T ss_pred             eccceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEec
Confidence            33478899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhc
Q 017418          165 VGDSAVPTP-SSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK  243 (372)
Q Consensus       165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~  243 (372)
                      ......... ..++..+++.+...++++.+  ........+.|.++                                  
T Consensus       148 ~gaApa~~~~~apa~~~pk~~~a~~a~p~~--~s~~~p~~~apv~e----------------------------------  191 (457)
T KOG0559|consen  148 PGAAPAKGGASAPAKAEPKTAPAAAAPPKP--SSKPPPKEAAPVAE----------------------------------  191 (457)
T ss_pred             CCCCCccccccCCCccCCCCCCCCCCCCCc--cCCCCccccCCCCC----------------------------------
Confidence            753322111 11111111111111111100  00000000111000                                  


Q ss_pred             CCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHH
Q 017418          244 GAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLK  322 (372)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR  322 (372)
                       ..++|.+..+............+..++... ......+++++|++||+.||.||.+|+ +...+|.|+||||++|++||
T Consensus       192 -~p~~p~~~~P~~~~a~k~~v~~~~~~p~~~-~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mR  269 (457)
T KOG0559|consen  192 -SPPAPSSPEPVPASAKKPSVAQPKPPPSEG-ATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMR  269 (457)
T ss_pred             -CCCCCCCCCCCCccccCccccCCCCCcccc-cCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence             000000000000000000000000000000 011345789999999999999999996 79999999999999999999


Q ss_pred             HHhhccC-CCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          323 ASFQNNN-SDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       323 ~~lk~~~-~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      ++||+.| +++|+||+||.+|+|||+.||++.|.+|+.+|++  +|||++
T Consensus       270 k~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~--~iVYRD  317 (457)
T KOG0559|consen  270 KQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGD--DIVYRD  317 (457)
T ss_pred             HHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCC--eeEEee
Confidence            9999987 7999999999999999999999999999999877  899986

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=2.8e-33  Score=272.57  Aligned_cols=164  Identities=24%  Similarity=0.423  Sum_probs=123.9

Q ss_pred             ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCC
Q 017418          202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPD  281 (372)
Q Consensus       202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (372)
                      +++||+||+||+|+||||+.|+|||++|||+++||++|+......+.+..+.... ...  .....+.+.  + ......
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~--~-~~~~~~   75 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVS-SAQ--QAAKTAAPA--A-APPKLE   75 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccc-ccc--ccccccCCc--c-cccCCC
Confidence            4689999999999999999999999999999999999974321101110000000 000  000000000  0 000112


Q ss_pred             CcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418          282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC  359 (372)
Q Consensus       282 ~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~  359 (372)
                      ++.+||++||++|+++|++|+ ++||||++.|||+++|+++|+++++.+. ++|+|+||++||+||++.||++||.+|++
T Consensus        76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~  155 (306)
T PRK11857         76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK  155 (306)
T ss_pred             ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence            456899999999999999995 8999999999999999999999998654 45899999999999999999999999999


Q ss_pred             EeCCCCEEEEcC
Q 017418          360 FNEESLEVILKG  371 (372)
Q Consensus       360 ~~~~~~eIv~~~  371 (372)
                      |++++++|++++
T Consensus       156 ~~~~~~~i~~~~  167 (306)
T PRK11857        156 YDEATSELVYPD  167 (306)
T ss_pred             EeCCCCEEEEcC
Confidence            998777898874

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=7.1e-33  Score=273.95  Aligned_cols=160  Identities=19%  Similarity=0.309  Sum_probs=123.6

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCC
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP  280 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (372)
                      .+.+||+||+||+|+||||+.|+|||++|||+++||++|+......+....+..   ..    +. ...+..   .....
T Consensus        48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~---~~----~~-~~~~~~---~~~~~  116 (347)
T PRK14843         48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQ---IE----KV-EEVPDN---VTPYG  116 (347)
T ss_pred             cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCC---Cc----cc-cCCCcc---cccCC
Confidence            456999999999999999999999999999999999999743211000000000   00    00 000000   00111


Q ss_pred             CCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccce
Q 017418          281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS  358 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa  358 (372)
                      .++.+||++|||+||++|++| +++||||++.|||+++|+++|+++++.+. .+|+||||++||+||++.||++||.||+
T Consensus       117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na  196 (347)
T PRK14843        117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA  196 (347)
T ss_pred             cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence            245689999999999999999 59999999999999999999999987653 4589999999999999999999999999


Q ss_pred             EEeCCCCEEEEcC
Q 017418          359 CFNEESLEVILKG  371 (372)
Q Consensus       359 ~~~~~~~eIv~~~  371 (372)
                      +|++++++|++++
T Consensus       197 ~~~~~~~~i~~~~  209 (347)
T PRK14843        197 SLTEDGKTIITHN  209 (347)
T ss_pred             EEecCCCeEEEec
Confidence            9997766788874

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=99.79  E-value=1.3e-19  Score=170.46  Aligned_cols=90  Identities=27%  Similarity=0.563  Sum_probs=79.8

Q ss_pred             CCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418          281 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  359 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~  359 (372)
                      +++++|++++||+||++|++|+ ++||||++.|||+++|+++|+++|+.....|.|+|+++||+||++.||++||.||++
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~   82 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS   82 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence            4678999999999999999996 999999999999999999999999876555669999999999999999999999999


Q ss_pred             EeCCCCEEEEcC
Q 017418          360 FNEESLEVILKG  371 (372)
Q Consensus       360 ~~~~~~eIv~~~  371 (372)
                      |++++ +|++++
T Consensus        83 ~~~~~-~i~~~~   93 (231)
T PF00198_consen   83 WDGDG-EIVLYE   93 (231)
T ss_dssp             EETTS-EEEEES
T ss_pred             ccccc-ceeeee
Confidence            99876 788764

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.77  E-value=1.8e-18  Score=170.03  Aligned_cols=119  Identities=24%  Similarity=0.363  Sum_probs=99.2

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  169 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~  169 (372)
                      .+|+||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.++.....
T Consensus         3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~   82 (371)
T PRK14875          3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVS   82 (371)
T ss_pred             eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999653211


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhH
Q 017418          170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV  236 (372)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV  236 (372)
                      .                 +          .....++|.+++++++ ++++..+.+++..+.+...++
T Consensus        83 ~-----------------~----------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  121 (371)
T PRK14875         83 D-----------------A----------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV  121 (371)
T ss_pred             c-----------------c----------cccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence            0                 0          0123467788888777 788877777777666654444

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.76  E-value=3.6e-18  Score=133.12  Aligned_cols=74  Identities=27%  Similarity=0.555  Sum_probs=72.0

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      .+|++|.+|..+.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06748 hypothetical protein; Validated

Probab=99.65  E-value=1.1e-15  Score=121.47  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=61.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe-CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet-dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++|+.|++|++|+.|+.
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            69999999999999999999999999 9999999999999999999999999999999999964

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.63  E-value=9.3e-16  Score=164.18  Aligned_cols=91  Identities=21%  Similarity=0.331  Sum_probs=83.2

Q ss_pred             CCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418          281 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC  359 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~  359 (372)
                      +++.+||+|++++|+++|..|+++|++|...+|+++.|+++|..+|++++ .+|.|+||++||+||+++||++||.||++
T Consensus       114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas  193 (1228)
T PRK12270        114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH  193 (1228)
T ss_pred             CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence            45789999999999999999999999999999999999999999998875 78999999999999999999999999999


Q ss_pred             EeC--CCCEEEEcC
Q 017418          360 FNE--ESLEVILKG  371 (372)
Q Consensus       360 ~~~--~~~eIv~~~  371 (372)
                      |++  ++..|++++
T Consensus       194 y~~~DGKp~iv~~~  207 (1228)
T PRK12270        194 YAEVDGKPTLVTPA  207 (1228)
T ss_pred             eeccCCCceeeccC
Confidence            984  444588764

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.56  E-value=1.7e-14  Score=111.48  Aligned_cols=62  Identities=23%  Similarity=0.396  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|.+|++++||.|++||+|+++|+||++++|.||.+|+|.++++.+|+.|..|++|+.|+
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            69999999999999999999999999999999999999999999999999999999999884

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.55  E-value=3.2e-14  Score=146.13  Aligned_cols=79  Identities=25%  Similarity=0.463  Sum_probs=74.9

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGDS  168 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~~  168 (372)
                      ++|+||++|++|++|+|.+|+|++||.|++||+|++|||||++++++|+.+|+|.++++++|+ .|++|++|++|+.+++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            479999999999999999999999999999999999999999999999999999999999995 7999999999976543

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.51  E-value=1e-13  Score=107.04  Aligned_cols=72  Identities=22%  Similarity=0.430  Sum_probs=69.4

Q ss_pred             EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418           92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus        92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      |.+|+++.++.+|++.+|++++||.|++||+|+.+|++|+.++|+||++|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.45  E-value=3.2e-13  Score=103.81  Aligned_cols=62  Identities=31%  Similarity=0.411  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|.+|++++||.|++||+|+++|+||+.+++.++.+|+|.++++++|+.|..|++|+.|+
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            69999999999999999999999999999999999999999999999999999999999985

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.45  E-value=2.8e-13  Score=144.44  Aligned_cols=74  Identities=28%  Similarity=0.453  Sum_probs=72.3

Q ss_pred             EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +|.||+||  |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|++|+.+
T Consensus         4 ~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          4 EIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             eEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            69999999  999999999999999999999999999999999999999999999999999999999999999875

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.44  E-value=2.1e-13  Score=119.02  Aligned_cols=62  Identities=27%  Similarity=0.352  Sum_probs=60.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      -|++.+.+|++||+|++||+||+||.||+.++|.||.+|+|.+|++++|+.|..|++|+.|+
T Consensus        78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            59999999999999999999999999999999999999999999999999999999999985

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.43  E-value=5.2e-13  Score=141.19  Aligned_cols=77  Identities=26%  Similarity=0.446  Sum_probs=74.3

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ++|.||++|++|.+|+|++|+|++||.|+.||+||++||||+++++.|+.+|+|.++++++|+.|++|++|+.|+..
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~   79 (590)
T TIGR02927         3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA   79 (590)
T ss_pred             eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999753

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.39  E-value=2.9e-13  Score=92.54  Aligned_cols=38  Identities=47%  Similarity=0.713  Sum_probs=33.9

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHH
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK  238 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~  238 (372)
                      ++.+||+||+||+|+|||++.|+|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            46789999999999999999999999999999999984

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.36  E-value=4.4e-12  Score=109.11  Aligned_cols=70  Identities=30%  Similarity=0.482  Sum_probs=64.9

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      +...|.-|-      .|+|.+|++++||.|++||+|+++|+||+..+|.||++|+|.++++++||.|..|++|+.|
T Consensus        60 ~~~~v~Ap~------~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         60 GADAMPSPM------PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCcEEECCC------CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            344566665      7999999999999999999999999999999999999999999999999999999999987

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.33  E-value=5.6e-12  Score=132.46  Aligned_cols=77  Identities=39%  Similarity=0.646  Sum_probs=73.5

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ++|+||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus         3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~   79 (547)
T PRK11855          3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG   79 (547)
T ss_pred             ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence            3689999999 9999999999999999999999999999999999999999999999999999999999999997543

>PRK07051 hypothetical protein; Validated

Probab=99.32  E-value=1.1e-11  Score=98.00  Aligned_cols=69  Identities=17%  Similarity=0.287  Sum_probs=64.7

Q ss_pred             EEEEccCCCCCcceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418           90 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK  162 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~  162 (372)
                      .+|..|.      .|++.+       |++++||.|++||+|+.+|+||+.++|+||.+|+|.++++++|+.|..|++|+.
T Consensus         4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~   77 (80)
T PRK07051          4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR   77 (80)
T ss_pred             cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence            4567776      688888       999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 017418          163 LV  164 (372)
Q Consensus       163 i~  164 (372)
                      ++
T Consensus        78 i~   79 (80)
T PRK07051         78 IE   79 (80)
T ss_pred             Ee
Confidence            85

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.31  E-value=8.7e-12  Score=110.29  Aligned_cols=70  Identities=26%  Similarity=0.340  Sum_probs=65.0

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ...|.-|-      .|+|.+|++++||.|++||+|+++|+||++.+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus        84 ~~~v~ap~------~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~  153 (153)
T PRK05641         84 ENVVTAPM------PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG  153 (153)
T ss_pred             CCEEECCC------CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence            34566665      69999999999999999999999999999999999999999999999999999999999873

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.30  E-value=8.1e-12  Score=131.12  Aligned_cols=75  Identities=31%  Similarity=0.527  Sum_probs=72.1

Q ss_pred             EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|++|+..
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~   76 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG   76 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence            5899999987 89999999999999999999999999999999999999999999999999999999999999753

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.28  E-value=2.1e-11  Score=91.40  Aligned_cols=61  Identities=33%  Similarity=0.497  Sum_probs=59.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      +|+|.+|++++||.|++||+|++++++|...+|+||.+|+|.++++..|+.|..|++|+.|
T Consensus         7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            7999999999999999999999999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.24  E-value=2.2e-11  Score=115.03  Aligned_cols=62  Identities=26%  Similarity=0.421  Sum_probs=58.5

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|++.+       |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++|+.|.+|++|++|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            456665       99999999999999999999999999999999999999999999999999999985

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.21  E-value=1.9e-10  Score=85.91  Aligned_cols=73  Identities=34%  Similarity=0.651  Sum_probs=70.1

Q ss_pred             EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418           91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      ++.+|+++.+..+|+|.+|+++.|+.|..|++|+.++++|....+.++.+|++.+.++.+|+.+..|++|+++
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999875

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.20  E-value=4.4e-11  Score=106.30  Aligned_cols=62  Identities=29%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      -|++..       |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus        88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            588875       99999999999999999999999999999999999999999999999999999874

The gene name is accB or fabE.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.16  E-value=1.2e-10  Score=122.73  Aligned_cols=70  Identities=27%  Similarity=0.414  Sum_probs=65.0

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .+|.-|-      .|+|++|+|++||.|++||+|++||+||++.+|+||++|+|.++++++|+.|.+|++|+.|+.
T Consensus       526 ~~v~apm------~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        526 GDITVAI------PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             CeEecCc------ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            3555554      699999999999999999999999999999999999999999999999999999999999964

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.15  E-value=1.3e-10  Score=103.27  Aligned_cols=69  Identities=28%  Similarity=0.384  Sum_probs=62.6

Q ss_pred             EEEEccCCCCCcceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418           90 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK  162 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~  162 (372)
                      ..|.-|-      -|++..       |+|++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+.|..|++|+.
T Consensus        80 ~~v~sp~------~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~  153 (155)
T PRK06302         80 HVVTSPM------VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFV  153 (155)
T ss_pred             CEEeCCc------CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEE
Confidence            3466565      477765       999999999999999999999999999999999999999999999999999998


Q ss_pred             Ee
Q 017418          163 LV  164 (372)
Q Consensus       163 i~  164 (372)
                      |+
T Consensus       154 i~  155 (155)
T PRK06302        154 IE  155 (155)
T ss_pred             eC
Confidence            74

>TIGR02712 urea_carbox urea carboxylase

Probab=99.03  E-value=5.5e-10  Score=126.54  Aligned_cols=62  Identities=29%  Similarity=0.510  Sum_probs=60.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            79999999999999999999999999999999999999999999999999999999999884

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.00  E-value=1.4e-09  Score=115.08  Aligned_cols=70  Identities=29%  Similarity=0.339  Sum_probs=64.9

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ..+|.-|-      .|+|++|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|..|++|++|.
T Consensus       524 ~~~V~Ap~------~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        524 GEPVTAPL------AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             CceEECCc------cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            44566665      79999999999999999999999999999999999999999999999999999999999873

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.98  E-value=1e-09  Score=115.85  Aligned_cols=67  Identities=27%  Similarity=0.318  Sum_probs=61.5

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEE
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL  160 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~l  160 (372)
                      +...|.-|-      .|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus       516 ~~~~v~ap~------~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       516 AGTPVTAPI------AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             CCCeEeCCc------cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            344566665      7999999999999999999999999999999999999999999999999999999875

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.95  E-value=1.9e-09  Score=121.31  Aligned_cols=62  Identities=19%  Similarity=0.319  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            69999999999999999999999999999999999999999999999999999999999884

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.89  E-value=5.6e-09  Score=110.65  Aligned_cols=71  Identities=24%  Similarity=0.317  Sum_probs=65.9

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      +...|.-|-      .|+|++|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       521 ~~~~V~Ap~------~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        521 APGAVTSPM------PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             CCceEeCCC------cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            445566665      79999999999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.76  E-value=2.6e-08  Score=112.61  Aligned_cols=62  Identities=31%  Similarity=0.498  Sum_probs=60.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            69999999999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.76  E-value=1.3e-08  Score=104.55  Aligned_cols=62  Identities=27%  Similarity=0.339  Sum_probs=60.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|+.+.|++|+.|.+||+|+.+|.|||+..|+||.+|+|.++.+.+|+.|..|++|+.++
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            59999999999999999999999999999999999999999999999999999999999986

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.57  E-value=7.6e-08  Score=102.11  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=60.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|.|+++.|+.||.|++||+|+.+|.|||+..|.||+||+|..++|..|+.|..|+.|.+++
T Consensus      1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            59999999999999999999999999999999999999999999999999999999999875

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.30  E-value=8.5e-07  Score=92.73  Aligned_cols=62  Identities=26%  Similarity=0.375  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|+++.|++|+.|++||+||.+..|||++-|.||.+|+|+++.+..|+.+..|+.|++++
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            59999999999999999999999999999999999999999999999999999999999886

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.24  E-value=2.3e-06  Score=69.87  Aligned_cols=62  Identities=19%  Similarity=0.253  Sum_probs=48.2

Q ss_pred             EEEEccCCCCCcceEEEEE-EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC
Q 017418           90 VDVPLAQTGEGIAECELLK-WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN  152 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~-w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~  152 (372)
                      ..|-|=+.+..+ =|.|.. |++++|+.|++||.|++||++|+..+|.||.+|+|.++.....+
T Consensus        16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~   78 (96)
T cd06848          16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD   78 (96)
T ss_pred             EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence            334444433322 467777 56777999999999999999999999999999999999866554

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.99  E-value=2.2e-05  Score=77.12  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  238 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA  238 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence            4699999999999999999999999999999754

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.97  E-value=2.9e-05  Score=79.20  Aligned_cols=64  Identities=13%  Similarity=0.173  Sum_probs=57.0

Q ss_pred             eEEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------ceee
Q 017418          103 ECELLKWF-VKEGDEIEEFQPLCAVQSD------------------------------------------------KATI  133 (372)
Q Consensus       103 eG~I~~w~-v~eGd~V~~Gd~l~~vetd------------------------------------------------K~~~  133 (372)
                      .|.|.+++ +++||.|++||+|++|++.                                                ....
T Consensus       131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~  210 (409)
T PRK09783        131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF  210 (409)
T ss_pred             CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence            79999998 9999999999999999831                                                0135


Q ss_pred             EEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .|+||++|+|.+..+.+|+.|..|++|+.|...
T Consensus       211 ~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~  243 (409)
T PRK09783        211 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM  243 (409)
T ss_pred             EEECCCCeEEEEEECCCCCEECCCCeEEEEEcC
Confidence            799999999999999999999999999999654

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.96  E-value=5.8e-06  Score=84.47  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=59.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      -|.|.+++|++||.|++||.|+.++.|||...++||.+|+|..+.++.|++|..|.+|..++
T Consensus       609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            47899999999999999999999999999999999999999999999999999999998763

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.94  E-value=2.1e-05  Score=66.05  Aligned_cols=46  Identities=26%  Similarity=0.271  Sum_probs=38.7

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418          104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA  149 (372)
Q Consensus       104 G~I~~w~-v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~  149 (372)
                      |.|+.+. .++|+.|++||+|++||++|+..+|.||.+|+|.+++-.
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~   76 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIA   76 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence            4444442 366999999999999999999999999999999998644

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.93  E-value=2.5e-05  Score=76.76  Aligned_cols=64  Identities=19%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|.|.+++|++||.|++||+|+++++...                                                   
T Consensus        55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a  134 (310)
T PRK10559         55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV  134 (310)
T ss_pred             ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence            79999999999999999999999986210                                                   


Q ss_pred             -------------------eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 -------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 -------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                                         ...|+||++|+|..+.+++|+.|..|++|+.|...
T Consensus       135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                               24599999999999999999999999999988643

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.92  E-value=2.5e-05  Score=75.68  Aligned_cols=72  Identities=25%  Similarity=0.338  Sum_probs=61.0

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCce-------------------------------------
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------  131 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~-------------------------------------  131 (372)
                      ...|..|.      +|+|.++++++||.|++||+|+.+++...                                     
T Consensus        26 ~~~v~a~~------~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~   99 (322)
T TIGR01730        26 EADLAAEV------AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV   99 (322)
T ss_pred             EEEEEccc------cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            34555554      79999999999999999999999975311                                     


Q ss_pred             ----------------------------------eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 ----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ----------------------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                                                        ...|+||++|+|..+.+.+|+.+..|++|+.|...
T Consensus       100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730       100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence                                              24699999999999999999999999999999753

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.86  E-value=3.3e-05  Score=65.24  Aligned_cols=44  Identities=25%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus        32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            44544433 669999999999999999999999999999999885

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.81  E-value=4.6e-05  Score=75.71  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~  242 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT  242 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence            3589999999999999999999999999999754

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.81  E-value=3.1e-05  Score=86.81  Aligned_cols=65  Identities=26%  Similarity=0.569  Sum_probs=60.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ..|++++|+|+.|+.|..||+-++||.|||.+.+.+..+|+| +...++|+.+..|++|+.++-++
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD  756 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence            379999999999999999999999999999999999999998 56689999999999999998654

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.78  E-value=4.1e-05  Score=67.24  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             eEEEEEEEcC-CCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418          103 ECELLKWFVK-EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA  149 (372)
Q Consensus       103 eG~I~~w~v~-eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~  149 (372)
                      =|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++...
T Consensus        43 lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~   90 (144)
T PRK13380         43 AGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEA   90 (144)
T ss_pred             cCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHh
Confidence            4778888776 8999999999999999999999999999999998744

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=97.69  E-value=3e-05  Score=77.42  Aligned_cols=42  Identities=52%  Similarity=0.752  Sum_probs=38.4

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  242 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~  242 (372)
                      +..+||.+|++|+++|||++.|+|||++|||+++||++|...
T Consensus         5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~   46 (347)
T PRK14843          5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT   46 (347)
T ss_pred             cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence            345799999999999999999999999999999999999753

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.68  E-value=0.00012  Score=63.07  Aligned_cols=63  Identities=24%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc---CCCCeEe---ccc-EEEEEecC
Q 017418          104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH---APGNIVK---VGE-TLLKLVVG  166 (372)
Q Consensus       104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~---~eg~~v~---vG~-~la~i~~~  166 (372)
                      |.|+.+ +.+.|+.|++||+++.||++|...+|.||.+|+|.++..   ...+.+.   -|+ -|+.|...
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~  107 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS  107 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence            445444 346799999999999999999999999999999999953   3333433   343 67777643

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.68  E-value=9.5e-05  Score=74.99  Aligned_cols=63  Identities=24%  Similarity=0.313  Sum_probs=54.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.++++++||.|++||+|++|+....                                                   
T Consensus        73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~  152 (397)
T PRK15030         73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  152 (397)
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            79999999999999999999999985210                                                   


Q ss_pred             --------------------eeEEecCCCeEEEEEccCCCCeEecccE--EEEEec
Q 017418          132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGET--LLKLVV  165 (372)
Q Consensus       132 --------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~--la~i~~  165 (372)
                                          ...|+||++|+|.+.+++.|+.|..|++  |+.|..
T Consensus       153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  208 (397)
T PRK15030        153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ  208 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence                                2359999999999999999999999985  666643

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.67  E-value=0.0001  Score=74.65  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ..|+||++|+|..+.+++|+.|..|++|+.|...+
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~  250 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT  250 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence            46999999999999999999999999999986543

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.66  E-value=0.00011  Score=74.21  Aligned_cols=63  Identities=16%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.++++++||.|++||+|+.+++...                                                   
T Consensus        71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~  150 (385)
T PRK09578         71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ  150 (385)
T ss_pred             cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            79999999999999999999999976311                                                   


Q ss_pred             --------------------eeEEecCCCeEEEEEccCCCCeEecc--cEEEEEec
Q 017418          132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV  165 (372)
Q Consensus       132 --------------------~~ei~ap~~G~v~~i~~~eg~~v~vG--~~la~i~~  165 (372)
                                          ...|+||++|+|.+.++++|+.|..|  ++|+.|..
T Consensus       151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~  206 (385)
T PRK09578        151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ  206 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence                                23699999999999999999999985  58888864

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.62  E-value=0.00011  Score=72.60  Aligned_cols=33  Identities=21%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      ..|+||++|+|..+.+.+|+.|..|++|+.|..
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~  236 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSL  236 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEec
Confidence            479999999999999999999999999999964

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.61  E-value=0.00012  Score=73.78  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=54.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDK----------------------------------------------------  130 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK----------------------------------------------------  130 (372)
                      .|.|.++++++||.|++||+|++|+...                                                    
T Consensus        69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~  148 (385)
T PRK09859         69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE  148 (385)
T ss_pred             cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            7999999999999999999999998531                                                    


Q ss_pred             -------------------eeeEEecCCCeEEEEEccCCCCeEeccc--EEEEEec
Q 017418          131 -------------------ATIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV  165 (372)
Q Consensus       131 -------------------~~~ei~ap~~G~v~~i~~~eg~~v~vG~--~la~i~~  165 (372)
                                         ....|+||++|+|.+.++..|+.|..|+  +|+.|..
T Consensus       149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  204 (385)
T PRK09859        149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR  204 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence                               0246999999999999999999999985  5777754

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.51  E-value=0.00018  Score=51.73  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=26.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~  131 (372)
                      .|+|.+|+|++||.|++||+|+++++...
T Consensus        10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~~   38 (50)
T PF13533_consen   10 SGRVESVYVKEGQQVKKGDVLLVLDSPDL   38 (50)
T ss_pred             CEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence            79999999999999999999999987543

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.46  E-value=0.00026  Score=72.30  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=53.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.++++++||.|++||+|++|+....                                                   
T Consensus        95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~  174 (415)
T PRK11556         95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE  174 (415)
T ss_pred             cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            79999999999999999999999975210                                                   


Q ss_pred             --------------------eeEEecCCCeEEEEEccCCCCeEeccc--EEEEEec
Q 017418          132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV  165 (372)
Q Consensus       132 --------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~--~la~i~~  165 (372)
                                          ...|+||++|+|..+.+..|+.|..|+  +|+.|..
T Consensus       175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~  230 (415)
T PRK11556        175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence                                236999999999999999999999984  6776643

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.35  E-value=0.00053  Score=68.70  Aligned_cols=63  Identities=22%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDK----------------------------------------------------  130 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK----------------------------------------------------  130 (372)
                      .|.|.+|++++||.|++||+|+.++...                                                    
T Consensus        69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~  148 (370)
T PRK11578         69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT  148 (370)
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            6999999999999999999999998631                                                    


Q ss_pred             ---------------------------------eeeEEecCCCeEEEEEccCCCCeEecc---cEEEEEec
Q 017418          131 ---------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVG---ETLLKLVV  165 (372)
Q Consensus       131 ---------------------------------~~~ei~ap~~G~v~~i~~~eg~~v~vG---~~la~i~~  165 (372)
                                                       ....|+||++|+|..+.+..|+.|..|   ++|+.|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~  219 (370)
T PRK11578        149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD  219 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEec
Confidence                                             013699999999999999999999765   46887754

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.32  E-value=0.00031  Score=50.48  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +..|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            46799999999999999999999999999999754

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.31  E-value=0.00074  Score=66.33  Aligned_cols=31  Identities=16%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             EEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+||++|+|..+.+..|+.|.. ++|+.|..
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~  236 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGD  236 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEec
Confidence            57899999999999999999986 78888764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.31  E-value=0.00036  Score=60.07  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=38.8

Q ss_pred             EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418          104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA  149 (372)
Q Consensus       104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~  149 (372)
                      |.|..+ +.++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~   82 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA   82 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence            444444 3467999999999999999999999999999999988633

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.29  E-value=0.0003  Score=68.37  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      .|.| +|+|++||.|++||+|+++++
T Consensus        29 ~G~v-~~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   29 SGRV-SVNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             -EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred             CEEE-EEEeCCcCEECCCCEEEEEEC
Confidence            7999 999999999999999999986

...

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.03  E-value=0.0014  Score=55.90  Aligned_cols=44  Identities=20%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+.+ +.++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            555555 34569999999999999999999999999999998885

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.84  E-value=0.0017  Score=55.96  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+-+ +.+.|+.|++|+.++.||+-|...+|.||.+|.|..+.
T Consensus        39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            555554 45778999999999999999999999999999997775

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.79  E-value=0.0036  Score=59.76  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=51.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      +|.+.. .++.||.|++||+|+.|+.    .+|+||.+|+|..+ +++|-.|+.|.-|+.|+.-.
T Consensus       172 ~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       172 DGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG  230 (256)
T ss_pred             CeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence            566655 9999999999999999975    69999999999665 79999999999999997644

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK12784 hypothetical protein; Provisional

Probab=96.72  E-value=0.0084  Score=46.80  Aligned_cols=63  Identities=16%  Similarity=0.276  Sum_probs=57.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCcee-eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKAT-IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~-~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+|.++++.+++.|-+-+.|+-|+++.-. ..|.--.+|.|..+.+.+|+.|..+..|+.++.
T Consensus        13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed   76 (84)
T PRK12784         13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED   76 (84)
T ss_pred             ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence            799999999999999999999999985544 558889999999999999999999999999975

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=96.52  E-value=0.0046  Score=58.43  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=30.2

Q ss_pred             EEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus        90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~  122 (265)
T TIGR00999        90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADL  122 (265)
T ss_pred             EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence            479999999999999999999999999998643

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.49  E-value=0.01  Score=59.79  Aligned_cols=32  Identities=38%  Similarity=0.510  Sum_probs=28.9

Q ss_pred             EEecCCCeEEEEEcc-CCCCeEecccEEEEEec
Q 017418          134 EITSRYKGKVAQLLH-APGNIVKVGETLLKLVV  165 (372)
Q Consensus       134 ei~ap~~G~v~~i~~-~eg~~v~vG~~la~i~~  165 (372)
                      .|+||++|+|..+.+ ..|+.|..|++|+.|..
T Consensus       273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~  305 (423)
T TIGR01843       273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVP  305 (423)
T ss_pred             EEECCCCcEEEEEEEEccCceecCCCeeEEEec
Confidence            499999999999876 79999999999999964

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=96.48  E-value=0.007  Score=60.66  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|+||.+|+|.+..+..|+.|..|.+|+.+-..
T Consensus       209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~  242 (352)
T COG1566         209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPL  242 (352)
T ss_pred             CEEECCCCceEEeecccCCCeecCCCceEEEecc
Confidence            3389999999999999999999999999988653

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.35  E-value=0.0059  Score=46.80  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             EEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      .|+||++|+|.++++++|+.|..|++|+.++...
T Consensus         4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889          4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            5899999999999999999999999999998644

>PRK06748 hypothetical protein; Validated

Probab=96.14  E-value=0.012  Score=46.89  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      .+|..|.      .|+|.++++++||.|..|++|+.|+.|
T Consensus        43 ~ei~Ap~------~G~v~~i~v~~Gd~V~vG~~la~I~~~   76 (83)
T PRK06748         43 VEIKVGI------SGYIESLEVVEGQAIADQKLLITVRDD   76 (83)
T ss_pred             EEEecCC------CEEEEEEEeCCCCEECCCCEEEEEECC
Confidence            4555555      899999999999999999999999876

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.05  E-value=0.021  Score=56.02  Aligned_cols=59  Identities=10%  Similarity=0.083  Sum_probs=48.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet---dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      .+=+...+++.||.|++||+|++|=.   +....+|.||.+|+|.  .....-.|..|+.|+.|
T Consensus       236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~--~~~~~p~v~~G~~l~~i  297 (298)
T cd06253         236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILF--TLREYPLVYEGSLVARI  297 (298)
T ss_pred             CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEE--EeecCCeecCCceEEEe
Confidence            35567788999999999999999843   4567889999999994  45666788888888865

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.01  E-value=0.017  Score=47.77  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=38.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      -|.-.+-.|++||.|++||.|++.+ +-....|.|+.+|+|..|.
T Consensus        38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence            4555678999999999999999996 4668899999999999885

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.84  E-value=0.012  Score=44.83  Aligned_cols=26  Identities=27%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      .+|+|.+|++++||.|..||+|++||
T Consensus        45 ~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         45 EAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CCEEEEEEEecCCCEECCCCEEEEEC
Confidence            48999999999999999999999986

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=95.78  E-value=0.026  Score=56.82  Aligned_cols=59  Identities=20%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      .|-+...+++.||.|++||+|++|-.    +....+|.||.+|+|  +.....-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCccccCCCeEEEe
Confidence            46677889999999999999999843    333455799999999  455677788888888866

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.58  E-value=0.039  Score=53.66  Aligned_cols=58  Identities=24%  Similarity=0.383  Sum_probs=44.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vet--dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      +-+.+..++.||.|++||+|+.|-.  .....+|+||.+|+|.  .....-.|..|+.|+.|
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI  286 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence            3345679999999999999999953  2234789999999994  44555667778887765

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=95.47  E-value=0.052  Score=50.51  Aligned_cols=60  Identities=17%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          302 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       302 ~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      ..-|+|.++.++|+|.|.+..++-         +++|...++-++.+|+-++|.+.-.+++++ ++++++
T Consensus        23 ~~~p~~svT~~lDvT~l~~~~K~~---------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g-~v~~~d   82 (206)
T PF00302_consen   23 FDNPYFSVTVNLDVTNLYKYAKEK---------GLSFFPAYLYAIMKAANEIPEFRYRIVDDG-EVVYYD   82 (206)
T ss_dssp             TSBEEEEEEEEEE-HHHHHHHHHT---------T--HHHHHHHHHHHHHTTSGGGCEEEETTS-CEEEES
T ss_pred             CCCceEecceeEEhHHHHHHHHHc---------CCCcHHHHHHHHHHHHhcCHHHheeeeCCC-cEEEEC
Confidence            357999999999999999876542         689999999999999999999999998763 566654

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.42  E-value=0.052  Score=53.56  Aligned_cols=60  Identities=25%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .+-+....++.||.|++||+|++|-.    .....+|.||.+|+|.-  ....-.|..|+.|+.|.
T Consensus       251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~  314 (316)
T cd06252         251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA  314 (316)
T ss_pred             CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence            35567789999999999999999853    24567899999999954  34445677888888764

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=95.26  E-value=0.05  Score=54.02  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=46.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      +=+....++.||.|++||+|++|-.    .....+|.||.+|+|..  ....-.|..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence            4456788999999999999999853    23567899999999955  4556778888888765

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PRK07051 hypothetical protein; Validated

Probab=95.08  E-value=0.054  Score=42.54  Aligned_cols=25  Identities=20%  Similarity=0.481  Sum_probs=24.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      +|+|.+|++++||.|+.||+|++++
T Consensus        55 ~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         55 AGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEe
Confidence            8999999999999999999999985

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.07  E-value=0.032  Score=41.07  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=29.3

Q ss_pred             EecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       135 i~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      ++||++|+|..+++++|+.|..|++|+.++.
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~   32 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA   32 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            6899999999999999999999999999975

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.01  E-value=0.031  Score=48.80  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      ...|+||..|++.++++++||.|..||+|+.|+.
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA  103 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA  103 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence            4679999999999999999999999999999984

>COG3608 Predicted deacylase [General function prediction only]

Probab=94.97  E-value=0.053  Score=53.78  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=46.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet---dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ++-+++.+|+.||.|++||+|+.|-.   .+...||+|+.+|+|..+.  ---.++.|+.+..+.
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~  325 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVG  325 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeec
Confidence            57788999999999999999998865   4788999999999997663  223344455555554

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=94.80  E-value=0.058  Score=51.75  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=37.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN  152 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~  152 (372)
                      .|..-+.+|+|||.|+.||+|++-- .-..+-+.||.+|+|.+|.-.+.-
T Consensus        37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~rR   85 (257)
T PF05896_consen   37 PGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGERR   85 (257)
T ss_pred             CCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCCCc
Confidence            3455688999999999999999531 224577999999999999764443

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.61  E-value=0.068  Score=51.99  Aligned_cols=56  Identities=25%  Similarity=0.257  Sum_probs=40.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEecCCCeEEEEEccCCCCeEecccEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETL  160 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet--dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~l  160 (372)
                      .+-+.+.+++.||.|++||+|++|=.  .....+|.||++|+|.-+.  ..-.|..|+.|
T Consensus       230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l  287 (288)
T cd06254         230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL  287 (288)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence            45567788999999999999999832  2446789999999995543  33455555544

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.53  E-value=0.053  Score=44.06  Aligned_cols=31  Identities=29%  Similarity=0.574  Sum_probs=22.7

Q ss_pred             EecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       135 i~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      |+||++|+|..+.+.+|+.|..|++|+.|..
T Consensus         2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~   32 (105)
T PF13437_consen    2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVD   32 (105)
T ss_pred             EECCCCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence            6677777777777777777777777777654

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=94.44  E-value=0.07  Score=41.23  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEE
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV  126 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~v  126 (372)
                      -.++|.-|.      +|+|.++++++||.|..||+|+.|
T Consensus        42 ~~~~v~a~~------~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen   42 MEMEVEAPV------SGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEEEBSS------SEEEEEESSTTTEEEETTSEEEEE
T ss_pred             cceEEECCC------CEEEEEEEECCCCEECCCCEEEEC
Confidence            345566665      899999999999999999999976

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=93.93  E-value=0.076  Score=46.96  Aligned_cols=45  Identities=27%  Similarity=0.300  Sum_probs=35.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceee-EEecCCCeEEEEEc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLL  147 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~-ei~ap~~G~v~~i~  147 (372)
                      +|..+-..+.+||.|.+||.|+-+.|-|-++ -++||.+|+|.-+.
T Consensus        88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            7888899999999999999999999999865 59999999997664

; PDB: 3D4R_D.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.85  E-value=0.043  Score=52.63  Aligned_cols=26  Identities=35%  Similarity=0.470  Sum_probs=10.8

Q ss_pred             CCeEEEEEccCCCCeEecccEEEEEe
Q 017418          139 YKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       139 ~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ..|+|.+|+|++|+.|+.|++|+.|+
T Consensus         8 ~~G~V~~i~V~eG~~VkkGq~L~~LD   33 (305)
T PF00529_consen    8 VGGIVTEILVKEGQRVKKGQVLARLD   33 (305)
T ss_dssp             S-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred             CCeEEEEEEccCcCEEeCCCEEEEEE
Confidence            44555555555555555555555554

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.84  E-value=0.096  Score=45.30  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=32.5

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.||.+|+|.++++.+|+.|..|++|+.++..
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam   95 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM   95 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            56799999999999999999999999999999854

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=93.33  E-value=0.24  Score=56.99  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      |...++.++.|+.+..++.....+.. -...|.||..|+|.++++++||.|+.|++|++++..
T Consensus      1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235      1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAM 1108 (1143)
T ss_pred             CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEec
Confidence            46667778888887777665544322 235799999999999999999999999999999864

This enzyme plays a role in gluconeogensis but not glycolysis.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.11  E-value=0.082  Score=50.66  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             cceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          101 IAECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       101 ~~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      ...|.|.+++|++||.|++||+|++++
T Consensus         7 ~~~G~V~~i~V~eG~~VkkGq~L~~LD   33 (305)
T PF00529_consen    7 LVGGIVTEILVKEGQRVKKGQVLARLD   33 (305)
T ss_dssp             SS-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred             CCCeEEEEEEccCcCEEeCCCEEEEEE
Confidence            468999999999999999999999986

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=92.92  E-value=0.17  Score=50.27  Aligned_cols=40  Identities=20%  Similarity=0.412  Sum_probs=34.4

Q ss_pred             EEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       125 ~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .|+.+  .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         43 YIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             EEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence            44443  57899999999999999999999999999999753

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=92.81  E-value=0.16  Score=49.76  Aligned_cols=42  Identities=19%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             EEEeCceeeEEecCCC---eEEEEEccCCCCeEecccEEEEEecC
Q 017418          125 AVQSDKATIEITSRYK---GKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       125 ~vetdK~~~ei~ap~~---G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .|+...-...|.++.+   |+|.++++++|+.|+.|++|+.|+..
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence            3444545567889999   99999999999999999999999864

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=92.75  E-value=0.17  Score=44.93  Aligned_cols=34  Identities=35%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|.||..|+|.++++++||.|..|+.|+.++..
T Consensus        85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam  118 (153)
T PRK05641         85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEAM  118 (153)
T ss_pred             CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence            5699999999999999999999999999999754

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=92.69  E-value=0.13  Score=53.37  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=38.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH  148 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~  148 (372)
                      .|.--+.+|++||+|++||+|++-.. -....+.||.+|+|..|..
T Consensus        37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        37 VGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence            46667889999999999999997642 3678999999999999954

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=92.59  E-value=0.13  Score=50.38  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~   76 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT   76 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence            57899999999999999999999999999999754

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=92.19  E-value=0.26  Score=51.13  Aligned_cols=45  Identities=29%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH  148 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~  148 (372)
                      -|.--+.+|++||+|++||.|++-... ....+.||.+|+|..|..
T Consensus        38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            466667899999999999999965432 578899999999999953

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=92.07  E-value=0.18  Score=48.88  Aligned_cols=40  Identities=23%  Similarity=0.368  Sum_probs=27.6

Q ss_pred             EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +.|+.  -+..|.++.+|+| ++++++|+.|+.|++|+.++..
T Consensus        15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~   54 (328)
T PF12700_consen   15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS   54 (328)
T ss_dssp             EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred             EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence            34444  4567999999999 9999999999999999999853

...

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=92.02  E-value=0.41  Score=44.97  Aligned_cols=55  Identities=20%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             cEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEc
Q 017418          305 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK  370 (372)
Q Consensus       305 Ph~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~  370 (372)
                      |.|.++.++|+|+|++.-++         -+++|.+.++-|+..|+-++|.+--.+.++  +++++
T Consensus        31 ~~fsiT~~iDiT~l~~~~K~---------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~--~v~~~   85 (219)
T PRK13757         31 CTYNQTVQLDITAFLKTVKK---------NKHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIW   85 (219)
T ss_pred             CceEEEEEEEHHHHHHHHHH---------cCCChHHHHHHHHHHHHhcCHhHheEEECC--eEEEE
Confidence            34999999999999976543         257888999999999999999999999644  56544

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=91.95  E-value=0.31  Score=49.84  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             eEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       122 ~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ....|+. .-.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        78 ~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~  121 (415)
T PRK11556         78 GLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR  121 (415)
T ss_pred             EEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence            4455665 3567899999999999999999999999999999754

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=91.86  E-value=0.36  Score=48.72  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ++.|+....-+....|+.. -..+|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        41 v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         41 LSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             eEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            3444444444455666654 367899999999999999999999999999999753

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=91.49  E-value=0.28  Score=50.11  Aligned_cols=29  Identities=14%  Similarity=0.157  Sum_probs=26.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~  131 (372)
                      .|.|.+++|++||.|++||+|+.|++...
T Consensus        66 ~G~V~~i~V~eG~~V~kGq~L~~l~~~~~   94 (421)
T TIGR03794        66 SGVVIDLDVEVGDQVKKGQVVARLFQPEL   94 (421)
T ss_pred             CeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence            79999999999999999999999987543

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=91.42  E-value=0.41  Score=47.95  Aligned_cols=41  Identities=17%  Similarity=0.194  Sum_probs=34.7

Q ss_pred             EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      +.|+.. -...|.++.+|.|.++++++|+.|+.|++|+.|+.
T Consensus        54 G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         54 GKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            344433 34589999999999999999999999999999975

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=91.35  E-value=0.32  Score=46.90  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +..|.++.+|+|.++++++|+.|+.|++|+.++..
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~   60 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD   60 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence            46899999999999999999999999999999753

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=91.34  E-value=0.26  Score=49.16  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=35.3

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe
Q 017418          108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI  153 (372)
Q Consensus       108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~  153 (372)
                      ...|++||.|++||+|+|-. --..+-++||.+|+|..|.-.+-..
T Consensus        42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~KRv   86 (447)
T COG1726          42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGEKRV   86 (447)
T ss_pred             cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeeccccee
Confidence            56899999999999999742 1145779999999999987554433

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=91.09  E-value=0.33  Score=50.14  Aligned_cols=43  Identities=19%  Similarity=0.160  Sum_probs=36.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.--+..|++||+|+.||+|++.+ ......+.||.+|+|..|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            444567999999999999999883 3468899999999998885

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.07  E-value=0.34  Score=48.75  Aligned_cols=43  Identities=26%  Similarity=0.310  Sum_probs=34.9

Q ss_pred             EEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       125 ~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      .|........|.++.+|+|.+++|.+|+.|+.|++|+.++...
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD   78 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence            3445666667889999999999999999999999999997643

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=90.89  E-value=0.42  Score=49.49  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          129 DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       129 dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +.-...|.++..|+|.+|+|++||.|+.|++|+.++..
T Consensus        56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence            33445788999999999999999999999999999754

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=90.79  E-value=0.39  Score=42.66  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             cceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          101 IAECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       101 ~~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      -.+|+|++|+++.||.|..||+|++|+
T Consensus       129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        129 DKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            348999999999999999999999884

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=90.69  E-value=0.58  Score=47.16  Aligned_cols=56  Identities=18%  Similarity=0.162  Sum_probs=42.2

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       110 ~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .++.|+.-..-.....|+.+ -..+|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            34444433333444566654 457899999999999999999999999999999754

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=90.50  E-value=0.4  Score=42.64  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             CcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          100 GIAECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      +-.+|+|.+|+++.||.|..||+|++|+
T Consensus       129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       129 AEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            3458999999999999999999999885

The gene name is accB or fabE.

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.48  E-value=0.9  Score=44.37  Aligned_cols=43  Identities=28%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEecCCCeEEEEE
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQL  146 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vet--dK~~~ei~ap~~G~v~~i  146 (372)
                      +=|.+..++.||.|++||.|++|-.  .....++.||.+|+|.-+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            4556677888888888888888742  122456788888888554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=90.33  E-value=0.44  Score=48.68  Aligned_cols=35  Identities=29%  Similarity=0.254  Sum_probs=32.3

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            44899999999999999999999999999999864

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=90.07  E-value=0.39  Score=47.21  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +.|.++.+|.|.++++++|+.|+.|++|+.|+..
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~   81 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP   81 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence            5699999999999999999999999999999864

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=90.04  E-value=0.28  Score=38.26  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      +.=+.++++.||.|++||+||+|=++.
T Consensus        31 ~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   31 AVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             T-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             CcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            334678999999999999999986543

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=90.02  E-value=0.5  Score=45.54  Aligned_cols=28  Identities=11%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             CcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          100 GIAECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      .-.+|+|++|++++||.|..||+|++||
T Consensus       246 AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        246 ADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             cCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            3348999999999999999999999985

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=89.98  E-value=0.48  Score=49.31  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=26.4

Q ss_pred             cceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          101 IAECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      ..+|+|.+|++++||.|..|++|+.|+.+
T Consensus       140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        140 PASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            35899999999999999999999999754

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=89.90  E-value=0.41  Score=48.56  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~   95 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT   95 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence            67899999999999999999999999999999864

>PF13437 HlyD_3: HlyD family secretion protein

Probab=89.89  E-value=0.77  Score=37.13  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=24.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      .|.|..+.+++|+.|..|++|++|..
T Consensus         7 ~G~V~~~~~~~G~~v~~g~~l~~i~~   32 (105)
T PF13437_consen    7 DGVVVSINVQPGEVVSAGQPLAEIVD   32 (105)
T ss_pred             CEEEEEEeCCCCCEECCCCEEEEEEc
Confidence            79999999999999999999999974

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=89.85  E-value=0.45  Score=51.95  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=35.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.--+.+|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            455568999999999999999653 3357899999999998874

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=89.77  E-value=0.42  Score=47.08  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            56899999999999999999999999999999753

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=89.76  E-value=1  Score=43.40  Aligned_cols=60  Identities=23%  Similarity=0.297  Sum_probs=48.2

Q ss_pred             EEEEEEEcCCCCeecCCCeE--EEEE-e-CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          104 CELLKWFVKEGDEIEEFQPL--CAVQ-S-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l--~~ve-t-dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      +-+....++.||.|++||+|  ..+- . +....++.||.+|+|  +...+.-.|..|+.|+.+..
T Consensus       228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~  291 (292)
T PF04952_consen  228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK  291 (292)
T ss_dssp             SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred             cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence            44568899999999999999  5442 2 234568999999999  77788889999999998753

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=89.53  E-value=0.32  Score=50.30  Aligned_cols=29  Identities=10%  Similarity=0.161  Sum_probs=26.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      +.|.|.+++|++||.|++||+|+.++...
T Consensus        66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        66 SNNAIKENYLKENKFVKKGDLLVVYDNGN   94 (457)
T ss_pred             CCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence            36999999999999999999999997643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=89.23  E-value=0.68  Score=45.30  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=30.3

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      .+|..|.      .|+|.++++++||.|..|++|+.|+.+.
T Consensus        46 ~~~~a~~------~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         46 NEVEAPA------AGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             EEEecCC------CeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            4566665      8999999999999999999999998754

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.09  E-value=1  Score=39.11  Aligned_cols=49  Identities=16%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EecCCCeEEEEE
Q 017418           92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQL  146 (372)
Q Consensus        92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~e-i~ap~~G~v~~i  146 (372)
                      ..+|-      ||-++.-.+..|+.|.+||+++-+.|-|..+- +++|.+|+|.-+
T Consensus        94 l~iPv------EGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          94 LLIPV------EGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             EEEec------CcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            45665      89999999999999999999999999998765 899999999655

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=88.66  E-value=0.89  Score=45.52  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=25.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      .|+|.+++|++||+|+.|+.|+.|++.
T Consensus       123 sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  123 SGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             cceeeEEecCCCCcccCCceeEEecCC
Confidence            799999999999999999999999865

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=88.31  E-value=0.63  Score=47.22  Aligned_cols=42  Identities=12%  Similarity=0.177  Sum_probs=35.6

Q ss_pred             EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|+. .-..+|.+..+|+|.++++++|+.|+.|++|+.|+..
T Consensus        58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~   99 (397)
T PRK15030         58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence            34443 3467899999999999999999999999999999754

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=87.33  E-value=1.4  Score=38.15  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             eEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418          103 ECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL--------------------------------  146 (372)
Q Consensus       103 eG~I~~w~v~eGd~V----~~Gd~l~~vetdK~~~ei~ap~~G~v~~i--------------------------------  146 (372)
                      +|+++.+ -+.-|.|    --|+-++..=++.   .|.||++|+|..+                                
T Consensus        10 ~G~vi~l-~~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~g   85 (132)
T PF00358_consen   10 SGKVIPL-EEVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEG   85 (132)
T ss_dssp             SEEEEEG-GGSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTT
T ss_pred             CcEEEEh-hhCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcc
Confidence            5666653 2444444    3367777554442   6778888888776                                


Q ss_pred             ---ccCCCCeEecccEEEEEec
Q 017418          147 ---LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ---~~~eg~~v~vG~~la~i~~  165 (372)
                         ++++|+.|+.|++|+.++.
T Consensus        86 F~~~v~~G~~V~~G~~L~~~D~  107 (132)
T PF00358_consen   86 FETLVKEGDKVKAGQPLIEFDL  107 (132)
T ss_dssp             EEESS-TTSEE-TTEEEEEE-H
T ss_pred             eEEEEeCCCEEECCCEEEEEcH
Confidence               5779999999999999874

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=87.20  E-value=1.9  Score=46.46  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      -+|.||..|+|.++++++||.|..|++|++++...
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK  560 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK  560 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence            36999999999999999999999999999998643

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=87.18  E-value=1.1  Score=45.79  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=41.0

Q ss_pred             cCCCCeecCCCeEEEEEeCc-eeeEEecCCCeEEEEEc-cCCCCeEecccEEEEEecC
Q 017418          111 VKEGDEIEEFQPLCAVQSDK-ATIEITSRYKGKVAQLL-HAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       111 v~eGd~V~~Gd~l~~vetdK-~~~ei~ap~~G~v~~i~-~~eg~~v~vG~~la~i~~~  166 (372)
                      ++.++.-..-+..+.|+.|. -...|.++++|+|.+++ +.+||.|+.|++|+.|...
T Consensus       101 v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp  158 (409)
T PRK09783        101 VTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  158 (409)
T ss_pred             EEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence            33344333333445565443 35689999999999998 9999999999999999753

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=87.07  E-value=1.4  Score=33.27  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=27.0

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEE
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV  126 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~v  126 (372)
                      ..+|.-|.      +|+|++++++.|+.|..|+.|+.|
T Consensus        42 ~~~i~ap~------~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          42 TSDVEAPK------SGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             EEEEEcCC------CEEEEEEEeCCCCEECCCCEEEEC
Confidence            44565555      899999999999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=87.05  E-value=0.48  Score=42.22  Aligned_cols=39  Identities=31%  Similarity=0.354  Sum_probs=35.9

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418          110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH  148 (372)
Q Consensus       110 ~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~  148 (372)
                      +-+.|-.|.+||.++-+|+-|+.-+|.+|.+|.|.+|.-
T Consensus        87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe  125 (172)
T KOG3373|consen   87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINE  125 (172)
T ss_pred             cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecc
Confidence            347899999999999999999999999999999999863

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=86.76  E-value=2.2  Score=36.61  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.0

Q ss_pred             ccCCCCeEecccEEEEEec
Q 017418          147 LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ~~~eg~~v~vG~~la~i~~  165 (372)
                      ++++||.|..|++|+.++.
T Consensus        85 ~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          85 HVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             EecCCCEEcCCCEEEEEcH
Confidence            5779999999999998874

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=86.00  E-value=1.7  Score=31.30  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEE
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV  126 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~v  126 (372)
                      ...+..|.      .|++.++++++|+.|..|++|++|
T Consensus        43 ~~~i~a~~------~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          43 TVEVEAPA------AGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEEEECCC------CEEEEEEeeCCcCEeCCCCEEEEC
Confidence            34555555      789999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=85.94  E-value=1.1  Score=45.88  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=27.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA  131 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~  131 (372)
                      .+|+|.++++++||.|..|++|+.|++...
T Consensus        52 ~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~   81 (404)
T COG0508          52 DAGVLAKILVEEGDTVPVGAVIARIEEEGA   81 (404)
T ss_pred             CCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence            389999999999999999999999997644

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=85.71  E-value=1.8  Score=39.08  Aligned_cols=66  Identities=12%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------  146 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------  146 (372)
                      ..|.-|-      +|+++.+ -+.-|.|=.    ||-++..=++   ..|.||++|+|..+                   
T Consensus        21 ~~i~aP~------~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLI   90 (169)
T PRK09439         21 IEIIAPL------SGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   90 (169)
T ss_pred             eEEEecC------CeEEEEh-HHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            3455554      6777775 344454433    7777766554   56778888887765                   


Q ss_pred             ----------------ccCCCCeEecccEEEEEec
Q 017418          147 ----------------LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ----------------~~~eg~~v~vG~~la~i~~  165 (372)
                                      ++++||.|..|++|+.++-
T Consensus        91 HiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439         91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             EEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence                            5779999999999999874

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=85.56  E-value=0.76  Score=36.69  Aligned_cols=23  Identities=26%  Similarity=0.638  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe
Q 017418          106 LLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       106 I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      =++|++++||.|++||+|++++-
T Consensus        46 ~v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   46 EVEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEEeCCCCCccCCcEEEEEEe
Confidence            35799999999999999999974

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=85.39  E-value=0.74  Score=48.20  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       107 ~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      ...+|++||.|.+||+|.+-+-  ...-+.||.+|+|.+|.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            5678999999999999997764  88899999999999997

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=85.22  E-value=2.3  Score=40.77  Aligned_cols=41  Identities=32%  Similarity=0.460  Sum_probs=34.1

Q ss_pred             EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      ..++. ....++.++..|.|.++++++|+.|+.|++|+.++.
T Consensus        59 G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          59 GRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            34443 333478888999999999999999999999999986

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=85.18  E-value=0.82  Score=43.92  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      ..|.|.+++|++||.|++||+|+.++.
T Consensus        73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          73 VAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             cccEEEEEEccCCCeecCCCEEEEECC
Confidence            479999999999999999999999987

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=85.01  E-value=1.4  Score=45.25  Aligned_cols=28  Identities=32%  Similarity=0.494  Sum_probs=25.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      .+|+|.++++++||.|..|++|+.|+..
T Consensus        94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~  121 (418)
T PTZ00144         94 ASGVITKIFAEEGDTVEVGAPLSEIDTG  121 (418)
T ss_pred             CCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence            4899999999999999999999999754

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=83.95  E-value=1.9  Score=38.44  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~  131 (372)
                      +|+--+-++++||.|++||+|+++.-|..
T Consensus        85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I  113 (156)
T COG2190          85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI  113 (156)
T ss_pred             CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence            46677889999999999999999987653

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=83.54  E-value=2.1  Score=43.98  Aligned_cols=30  Identities=23%  Similarity=0.195  Sum_probs=27.1

Q ss_pred             cceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      -.+|+|.++++++||.|..|++|++|+.+.
T Consensus        51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            348999999999999999999999998654

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=83.34  E-value=3.2  Score=44.69  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.||.+|+|.++.+++|+.|..|++|+.++..
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam  556 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM  556 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            36799999999999999999999999999999754

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=83.30  E-value=1.4  Score=45.06  Aligned_cols=29  Identities=31%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             cceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          101 IAECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      ..+|+|.+|++++||.|..|++|+.|+.+
T Consensus        49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        49 PADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            34899999999999999999999999865

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=82.99  E-value=2.9  Score=35.69  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=18.0

Q ss_pred             EEccCCCCeEecccEEEEEec
Q 017418          145 QLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       145 ~i~~~eg~~v~vG~~la~i~~  165 (372)
                      +.++++||.|+.|++|+.++.
T Consensus        83 ~~~v~~Gd~V~~G~~l~~~D~  103 (121)
T TIGR00830        83 TSHVEEGQRVKKGDPLLEFDL  103 (121)
T ss_pred             EEEecCCCEEcCCCEEEEEcH
Confidence            457889999999999999874

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=82.83  E-value=1.5  Score=47.06  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ..|.||..|.|.++++++||.|..|++|+.++...
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK  552 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK  552 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            47999999999999999999999999999998643

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=82.60  E-value=2.5  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.||..|+|.++++++|+.|..|++|+.++..
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEam  558 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAM  558 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            45799999999999999999999999999999754

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=82.11  E-value=3.7  Score=37.53  Aligned_cols=53  Identities=25%  Similarity=0.356  Sum_probs=40.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL  161 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la  161 (372)
                      +.|.. ++++|+.|++||-+..++-. .++++--|.+   .++.+++|+.|..|+.|.
T Consensus       130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            44444 45899999999999999865 5566666665   267899999999999654

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=81.49  E-value=2.9  Score=37.30  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=17.4

Q ss_pred             EccCCCCeEecccEEEEEec
Q 017418          146 LLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       146 i~~~eg~~v~vG~~la~i~~  165 (372)
                      .++++||.|+.||+|..++-
T Consensus        91 ~~v~~Gd~Vk~Gd~Li~fDl  110 (156)
T COG2190          91 SLVKEGDKVKAGDPLLEFDL  110 (156)
T ss_pred             EEeeCCCEEccCCEEEEECH
Confidence            36889999999999999874

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=81.10  E-value=3.4  Score=38.05  Aligned_cols=58  Identities=22%  Similarity=0.207  Sum_probs=43.6

Q ss_pred             eEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418          103 ECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK  162 (372)
Q Consensus       103 eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~  162 (372)
                      -|.|+-+.. ++|+.|++||-+..++- -.++.+--|.+-+. ++.+++|+.|..|+.|++
T Consensus       144 v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~  202 (202)
T PF02666_consen  144 VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY  202 (202)
T ss_pred             eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence            466666554 69999999999999986 44455444444433 788999999999999873

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=80.74  E-value=3  Score=42.89  Aligned_cols=31  Identities=10%  Similarity=0.079  Sum_probs=27.6

Q ss_pred             CcceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      +..+|+|.+|++++||.|..|++|++|+.++
T Consensus        46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~   76 (416)
T PLN02528         46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED   76 (416)
T ss_pred             cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence            3458999999999999999999999998654

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=80.12  E-value=2.7  Score=37.96  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=24.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      +|+--+++|++||+|++||+|+++.-+.
T Consensus       100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~  127 (169)
T PRK09439        100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL  127 (169)
T ss_pred             CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence            4666799999999999999999998644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		5e-29
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		9e-14
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		2e-13
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		9e-13
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		1e-11
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		2e-07
3rnm_E	58	The Crystal Structure Of The Subunit Binding Of Hum		6e-06
2coo_A	70	Solution Structure Of The E3_binding Domain Of Dihy		7e-06
1zwv_A	58	Solution Structure Of The Subunit Binding Domain (H		3e-05
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		4e-04
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		5e-04
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		6e-04
1w4f_A	47	Peripheral-Subunit Binding Domains From Mesophilic,		7e-04
1w85_I	49	The Crystal Structure Of Pyruvate Dehydrogenase E1		7e-04
2pdd_A	43	The High Resolution Structure Of The Peripheral Sub		7e-04
1w3d_A	55	Nmr Structure Of The Peripheral-Subunit Binding Dom		7e-04
1w4g_A	47	Peripheral-Subunit Binding Domains From Mesophilic,		8e-04

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 141/310 (45%), Gaps = 62/310 (20%)
Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 154 VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSEN--------------------SPDSK 193
             VG+TL+ L                    PG EN                    S + K
Sbjct: 67  ATVGQTLITL------------------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEK 108
Query: 194 LNKDTVGG------------VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241
           ++                  V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +  
Sbjct: 109 VDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 168
Query: 242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA 301
                   +    +A    +    E  +P+T  +           + G +R + K M  +
Sbjct: 169 GGAKPAPAAAEEKAAPAAAKPATTEGEFPETREK-----------MSGIRRAIAKAMVHS 217
Query: 302 AKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360
               PH   ++E +   LV  +  F+   ++  IK TFLP ++K+L  A+ +YP +N+  
Sbjct: 218 KHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI 277
Query: 361 NEESLEVILK 370
           ++E+ E+I K
Sbjct: 278 DDETEEIIQK 287

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L   G +
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 154 VKVGETLLKL 163
             VG+TL+ L
Sbjct: 66  ATVGQTLITL 75

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 54/89 (60%)
Query: 282 DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 341
           D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+   +       IK +F+P 
Sbjct: 31  DRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPF 90
Query: 342 LIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            +K+ S+ + ++P +N+  +E    +  K
Sbjct: 91  FLKAASLGLLQFPILNASVDENCQNITYK 119

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 4   VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 63
Query: 149 APGNIVKVGETLLKL 163
              +I  VG+ L+ +
Sbjct: 64  NLDDIAYVGKPLVDI 78

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEG+ E E+++W VKEGD +E+ Q L  V +DK T++I S  +GK+ ++L+  G +
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 154 VKVGETLLKL 163
           V VG TLL++
Sbjct: 66  VPVGSTLLQI 75

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 287 LRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKS 345
           + G +R + K M  +    PH   ++E +   LV  +  F+   ++  IK TFLP ++K+
Sbjct: 19  MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKA 78
Query: 346 LSMAMSKYPFMNSCFNEESLEVILK 370
           L  A+ +YP +N+  ++E+ E+I K
Sbjct: 79  LVSALREYPVLNTSIDDETEEIIQK 103

>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 58

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
           LATP VRNLA    I L +V  +GKDGR+LKED+L Y
Sbjct: 9   LATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNY 45

>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of Dihydrolipoamide Branched Chaintransacylase Length = 70

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA----DGPSTA 252
            LATP VR LA    I L +V  +GKDGR+LKED+L Y  ++  A     GPS+ 
Sbjct: 16  TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGPSSG 70

>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd) Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
           LATP VR LA    I L +V  +GKDGR+LKED+L Y
Sbjct: 9   LATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNY 45

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 276 VKWYPDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNN-NSDPN 333
           V+    DK +P+ G ++ + K MS++ + IPH   + E++   LV+ + + +++   +  
Sbjct: 12  VRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEG 71
Query: 334 IKHTFLPSLIKSLSMAMSKYPFMNSCF 360
              T+    IK+++ A+ ++P +NS +
Sbjct: 72  YSLTYFAFFIKAVAQALKEFPQLNSTW 98

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 282 DKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 340
           ++ + + G +R +   M+ A +I PHF  +EE++  ++V +  S +  N    +   FL 
Sbjct: 6   EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVT-GFLA 64
Query: 341 SLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            ++ S+   + +YP++N+ ++E     ILK
Sbjct: 65  RIVPSI---LKQYPYLNAIYDETRRVYILK 91

>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 49

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
           V+A P+VR  A+  G+++  V  TGK+GRVLKED+
Sbjct: 7   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 41

>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit- Binding Domain Of Dihydrolipoamide Acetyltransferase From The Pyruvate Dehydrogenase Multienzyme Complex Of Bacillus Stearothermophilus Length = 43

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
           V+A P+VR  A+  G+++  V  TGK+GRVLKED+
Sbjct: 1   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	4e-57
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	3e-34
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	7e-29
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	4e-26
2ii3_A	262	Lipoamide acyltransferase component of branched-C	4e-26
2coo_A	70	Lipoamide acyltransferase component of branched- c	7e-16
3rnm_E	58	Lipoamide acyltransferase component of branched-C	2e-14
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	4e-13
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	6e-13
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	2e-12
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	2e-11
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	2e-11
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	5e-11
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	6e-11
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	2e-10
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	3e-10
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	4e-10
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	5e-10
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	5e-10
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	6e-10
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	9e-10
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	1e-09
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	2e-09
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	6e-09
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	8e-09
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	1e-08
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	3e-08
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	6e-08
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	2e-07
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	4e-07
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	3e-06
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	2e-05
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	4e-05
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	6e-05
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	8e-05
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	8e-05
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	2e-04
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	2e-04
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	3e-04

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  190 bits (486), Expect = 4e-57
 Identities = 90/298 (30%), Positives = 141/298 (47%), Gaps = 26/298 (8%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             +  L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L 
Sbjct: 2   AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 61

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVK--------------PPGSENSPDSKL 194
             G +  VG+TL+ L        T      E  K                 + N+P ++ 
Sbjct: 62  PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121

Query: 195 NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASV 254
                  V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +          +    
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181

Query: 255 SADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEI 313
           +A    +    E  +P+T              + G +R + K M  +    PH   ++E 
Sbjct: 182 AAPAAAKPATTEGEFPET-----------REKMSGIRRAIAKAMVHSKHTAPHVTLMDEA 230

Query: 314 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           +   LV  +  F+   ++  IK TFLP ++K+L  A+ +YP +N+  ++E+ E+I K 
Sbjct: 231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKH 288

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score =  121 bits (305), Expect = 3e-34
 Identities = 32/90 (35%), Positives = 49/90 (54%)

Query: 87  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 146
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 147 LHAPGNIVKVGETLLKLVVGDSAVPTPSSD 176
            +   +I  VG+ L+ +             
Sbjct: 62  YYNLDDIAYVGKPLVDIETEALKDLEHHHH 91

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 98.8 bits (247), Expect = 4e-26
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           + +  L   GEG+ E E+++W VKEGD +E+ Q L  V +DK T++I S  +GK+ ++L+
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILY 60

Query: 149 APGNIVKVGETLLKL 163
             G +V VG TLL++
Sbjct: 61  REGQVVPVGSTLLQI 75

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  104 bits (261), Expect = 4e-26
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query: 281 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 340
            D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+   +       IK +F+P
Sbjct: 30  KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMP 89

Query: 341 SLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
             +K+ S+ + ++P +N+  +E    +  K 
Sbjct: 90  FFLKAASLGLLQFPILNASVDENCQNITYKA 120

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 70.6 bits (173), Expect = 7e-16
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query: 189 SPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG 248
           S  S   +      LATP VR LA    I L +V  +GKDGR+LKED+L Y  ++  A  
Sbjct: 3   SGSSGHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAIL 62

Query: 249 PSTASVSA 256
           P +   S 
Sbjct: 63  PPSGPSSG 70

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 246
            LATP VRNLA    I L +V  +GKDGR+LKED+L Y  ++   
Sbjct: 8   TLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 284 TVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSL 342
            VP+    +     +  +   +PH    E  +   L   + + +       +K T LP L
Sbjct: 17  EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLL 76

Query: 343 IKSLSMAMSKYPFMNSCFNEESLEVILK 370
           +K+ +  + + P  NS        +I K
Sbjct: 77  LKACAYLLKELPDFNSSLAPSGQALIRK 104

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 62.4 bits (152), Expect = 6e-13
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 200 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSA 256
             V A P  R LAK  GI+L  V  TG  G +  EDV +YA +   A  P+ A  + 
Sbjct: 3   REVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKATAPAPAPKAV 59

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
           LA P    L +  G++  +V  TG  GR+LKEDV+++
Sbjct: 1   LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRH 37

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 246
           V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +    G A
Sbjct: 7   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL--AGGA 49

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 280 PDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTF 338
                 P+ G    M + M+++ K IP      E+ C  L++L+  F         + T 
Sbjct: 12  AGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV----SAAPEITP 67

Query: 339 LPSLIKSLSMAMSKYPFMNSCFNE--ESLEVILKG 371
               ++ L +A+     +NS + +  E  +V +  
Sbjct: 68  FALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHR 102

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41

 Score = 56.3 bits (137), Expect = 5e-11
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242
           +LA P  R LA+  GI + +V  +G  GRV  EDV  YA +
Sbjct: 1   MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAER 41

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 105 ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164
           E+ +  VK GD++   Q L  V+ DKA++E+ + + G V +L    G+ VK G  ++   
Sbjct: 12  EVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 71

Query: 165 VGDSAVPTPSS 175
           V  +A     +
Sbjct: 72  VEGAAPAAAPA 82

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query: 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159
           G  E E+ +  VK GD++   Q L  V+ DKA++E+ + + G V +L    G+ VK G  
Sbjct: 11  GGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSL 70

Query: 160 LLKLVVGDSA 169
           ++   V  +A
Sbjct: 71  IMIFEVEGAA 80

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 200 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
                +P +R L   + ++   +  TG  GR+ +EDV K+
Sbjct: 8   NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKH 47

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
            +L ++ V++G  +E       ++  K  + +  + +G+V + +  PG +++ G  + +L
Sbjct: 14  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARL 72

Query: 164 VVGD 167
            + D
Sbjct: 73  ELDD 76

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40

 Score = 53.2 bits (129), Expect = 5e-10
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
           A P++R LA+  G++L  +  TG  GR+ +EDV + A
Sbjct: 2   AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
            +L ++ V++G  +E       ++  K  + +  + +G+V + +  PG +++ G  + +L
Sbjct: 26  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARL 84

Query: 164 VVGDSAVPTPSSD 176
            + D +   PS  
Sbjct: 85  ELDDPSKVHPSGP 97

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169
           VK GD IE  Q L  ++S KA++E+ S   G V  +    G+ +K G+ +++L     A
Sbjct: 20  VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 53.8 bits (130), Expect = 9e-10
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
            VD+ +    E +A+  +  W  K GD +   + L  +++DK  +E+ +   G +  +L 
Sbjct: 2   SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLE 61

Query: 149 APGNIVKVGETLLKLVVGD 167
             G  V   + L +L  G+
Sbjct: 62  DEGTTVTSRQILGRLREGN 80

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169
           V  GD I     L  +++DKAT+++ +   G V ++    G+ +  G  ++ +    +A
Sbjct: 23  VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA 81

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
           +  P     E IA+  +  W  K G+ ++  + +  +++DK  +E+ +   G +A+++  
Sbjct: 4   IKAP--TFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 150 PGNIVKVGETL 160
            G+ V  GE L
Sbjct: 62  EGDTVLSGELL 72

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 164
           + +W  KEGD+I E   +  V++DKAT+   S  +  +A++L A G   V +G  ++ + 
Sbjct: 24  IARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIG-AIICIT 82

Query: 165 VGD----SAVPTPSSDVLESVKPP 184
           VG      A    + D   +  P 
Sbjct: 83  VGKPEDIEAFKNYTLDSSAASGPS 106

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 164
           ++KW  KEG+ +     LC +++DKA + + +   G +A+++   G+  +++G +L+ L+
Sbjct: 24  IVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-SLIGLI 82

Query: 165 VGD----SAVPTPSS 175
           V +      V  PSS
Sbjct: 83  VEEGEDWKHVSGPSS 97

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 164
           + +W  K G+++ E   L  +++DKATI    + +G +A++L   G   V +G T L ++
Sbjct: 44  VQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLG-TPLCII 102

Query: 165 VGD----SAVPTPSSDVLESVKPP 184
           V      SA        +  +KP 
Sbjct: 103 VEKEADISAFADYRPTEVTDLKPQ 126

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 280 PDDKTVPLRGFQRTMVKTMSMAAK--IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHT 337
                +P+   +R + + +   +K  IPH++   ++N   ++ ++    N   +   K +
Sbjct: 10  GVFTDIPISNIRRVIAQRLM-QSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRSKIS 67

Query: 338 FLPSLIKSLSMAMSKYPFMNSCFNEESL 365
               +IK+ ++A  K P  NS + +  +
Sbjct: 68  VNDFIIKASALACLKVPEANSSWMDTVI 95

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 283 KTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 341
           + + + G +R +   M+ A   +PHF  +EE++  ++V +  S +      N K T    
Sbjct: 7   EILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK----ARNRKVTVTGF 62

Query: 342 LIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
           L + +   + +YP++N+ ++E     ILK 
Sbjct: 63  LARIVPSILKQYPYLNAIYDETRRVYILKK 92

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 108  KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164
            K     GD +E    +  +++ K  + + +   GKV ++LH  G++V+ G+ +  +V
Sbjct: 1180 KPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 164
           + +W  K G+++ E   L  +++D ATI    + +G +A++L   G   V +G  L  +V
Sbjct: 22  VQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
            K  VK GD+IE+ Q +  ++S K  I I +   G V ++    G+ V  G+ LL+L
Sbjct: 11  WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 246
           +P  RN+ + + ++     ATG  G   KED LK    K   
Sbjct: 13  SPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTG 54

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
            K  VKEGD ++  Q +  +++ K   EI +   GKV ++L    + V+ G+ L+K+
Sbjct: 20  SKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
           VK GD + E Q +C +++ K    +T+   G V  +    G+ V  G+ L++L
Sbjct: 41  VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 79  HALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSR 138
           H  A     G +  P+          +++   V  G ++ + QPLC + + K    +TS 
Sbjct: 641 HPKALKDVKGQIGAPMP--------GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSP 692

Query: 139 YKGKVAQLLHAPGNIVKVGETLLKL 163
            +G V ++       ++  + +L++
Sbjct: 693 MEGTVRKVHVTKDMTLEGDDLILEI 717

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
           L+  V+ GD +   Q L  +++ K   EI S   G V ++L   G  V  G+ L++L
Sbjct: 17  LRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166
            K FVK GD+++    L  + + K    I S   G V ++ +  G        L++    
Sbjct: 26  EKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85

Query: 167 DSA 169
           +S 
Sbjct: 86  ESD 88

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
            V+ G E++E Q LC +++ K    + +  KG VA++  + GN + V + +++ 
Sbjct: 627 DVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.97
2ii3_A	262	Lipoamide acyltransferase component of branched-C	99.83
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	99.81
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	99.81
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	99.8
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	99.8
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	99.79
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.78
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.77
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.77
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.76
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.74
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	99.74
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.73
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.68
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.66
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.66
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.64
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.61
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.46
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.42
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.37
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.36
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.35
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.34
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.32
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.31
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.3
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	99.3
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.28
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	99.27
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.26
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.24
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	99.24
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.22
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	99.22
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.16
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	99.15
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	99.14
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	99.11
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.09
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.08
2coo_A	70	Lipoamide acyltransferase component of branched- c	99.07
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.05
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	99.04
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.89
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.82
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.76
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.72
1hpc_A	131	H protein of the glycine cleavage system; transit	98.29
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.27
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.21
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.05
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.05
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.03
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.99
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.75
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.71
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.59
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.52
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.31
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.29
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.81
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	96.7
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.64
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.6
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	95.93
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	95.85
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.81
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.55
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	95.47
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.45
2qj8_A	332	MLR6093 protein; structural genomics, joint center	95.36
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.01
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	94.98
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	94.26
2xha_A	193	NUSG, transcription antitermination protein NUSG;	93.93
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	93.87
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	93.77
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	93.52
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	93.51
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	93.33
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	93.26
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	93.06
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	92.94
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	92.65
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	92.33
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	92.16
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	91.63
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	91.6
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	91.52
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	91.1
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	90.87
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	90.45
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	90.41
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	90.22
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	90.17
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	89.82
2xha_A	193	NUSG, transcription antitermination protein NUSG;	88.68
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	87.1
3our_B	183	EIIA, phosphotransferase system IIA component; exh	86.55
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	85.79
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	82.82
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	81.21
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	80.68
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	80.48
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	80.22
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	80.08

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=6.5e-56  Score=448.50  Aligned_cols=271  Identities=32%  Similarity=0.493  Sum_probs=39.3

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  169 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~  169 (372)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|++|+.+++.
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~   82 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE   82 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999875443


Q ss_pred             CCCCC--C--CC---CCCCCCCCCCC---CCCC--C--CCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhh
Q 017418          170 VPTPS--S--DV---LESVKPPGSEN---SPDS--K--LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED  235 (372)
Q Consensus       170 ~~~~~--~--~~---~~~~~~~~~~~---~~~~--~--~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~D  235 (372)
                      .....  .  .+   +.+...+...+   ..+.  .  .......++++||+||+||+|+||||+.|+|||++|||+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~D  162 (428)
T 3dva_I           83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED  162 (428)
T ss_dssp             ---------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTT
T ss_pred             ccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHH
Confidence            21110  0  00   00000000000   0000  0  001112357899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeeee
Q 017418          236 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN  314 (372)
Q Consensus       236 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evD  314 (372)
                      |++|+....... +..... ....         .+...........++++||++|||+||++|++|+ ++||||++.+||
T Consensus       163 V~~~~~~~~~~~-~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evD  231 (428)
T 3dva_I          163 IDAFLAGGAKPA-PAAAEE-KAAP---------AAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD  231 (428)
T ss_dssp             TTTTSCC-------------------------------------------------------------------------
T ss_pred             HHHHhhcccccc-cccccc-cccc---------CCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEe
Confidence            999974321110 000000 0000         0000000011123578999999999999999995 899999999999


Q ss_pred             chHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          315 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       315 vt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      ||+|+++|+++|+.++++|+||||++||+||+++||++||.||++|++++++|++++
T Consensus       232 vt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~  288 (428)
T 3dva_I          232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKH  288 (428)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcC
Confidence            999999999999877778999999999999999999999999999998666898875

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=99.83  E-value=8.6e-21  Score=180.25  Aligned_cols=91  Identities=36%  Similarity=0.688  Sum_probs=83.8

Q ss_pred             CCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEE
Q 017418          281 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF  360 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~  360 (372)
                      .++++||++|||+||++|++|+++||||++.|||+|+|+++|+++|+..++.|.|+||++||+||++.||++||.||++|
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~  109 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV  109 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred             CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence            46789999999999999999988999999999999999999999987544568999999999999999999999999999


Q ss_pred             eCCCCEEEEcC
Q 017418          361 NEESLEVILKG  371 (372)
Q Consensus       361 ~~~~~eIv~~~  371 (372)
                      ++++++|++++
T Consensus       110 ~~~~~~i~~~~  120 (262)
T 2ii3_A          110 DENCQNITYKA  120 (262)
T ss_dssp             CTTSCEEEECS
T ss_pred             eCCCCEEEEec
Confidence            97767898875

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=99.81  E-value=2.7e-20  Score=175.00  Aligned_cols=90  Identities=19%  Similarity=0.294  Sum_probs=82.3

Q ss_pred             CcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEE
Q 017418          282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF  360 (372)
Q Consensus       282 ~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~  360 (372)
                      .+++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.+++.|.|+||++||+||++.||++||.||++|
T Consensus        15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~   94 (243)
T 1dpb_A           15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSL   94 (243)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEE
T ss_pred             ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEEE
Confidence            467899999999999999995 8999999999999999999999987555568999999999999999999999999999


Q ss_pred             eCCCCEEEEcC
Q 017418          361 NEESLEVILKG  371 (372)
Q Consensus       361 ~~~~~eIv~~~  371 (372)
                      ++++++|++++
T Consensus        95 ~~~~~~i~~~~  105 (243)
T 1dpb_A           95 APSGQALIRKK  105 (243)
T ss_dssp             CTTSSCEEECS
T ss_pred             ecCCCeEEEeC
Confidence            97656898875

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=99.81  E-value=2.8e-20  Score=176.12  Aligned_cols=90  Identities=23%  Similarity=0.535  Sum_probs=81.7

Q ss_pred             CCCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccc
Q 017418          280 PDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMN  357 (372)
Q Consensus       280 ~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lN  357 (372)
                      .+++++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.++ ++|+|+||++||+||++.||++||.||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            34678999999999999999995 8999999999999999999999997653 358899999999999999999999999


Q ss_pred             eEEeCCCCEEEEcC
Q 017418          358 SCFNEESLEVILKG  371 (372)
Q Consensus       358 a~~~~~~~eIv~~~  371 (372)
                      ++|+++  +|++++
T Consensus        96 a~~~~~--~i~~~~  107 (256)
T 3mae_A           96 STWAGD--KIIEHA  107 (256)
T ss_dssp             EEEETT--EEEECS
T ss_pred             hEEecC--EEEEcC
Confidence            999865  788875

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=99.80  E-value=2.9e-20  Score=172.86  Aligned_cols=87  Identities=25%  Similarity=0.481  Sum_probs=79.6

Q ss_pred             CCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418          281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  359 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~  359 (372)
                      +++++||++|||+||++|++| +++||||++.|||+|+|+++|+++|+.    |.|+||++||+||++.||++||.||++
T Consensus         5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~----g~kls~~~~~ikA~~~Al~~~P~~N~~   80 (224)
T 3rqc_A            5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR----NRKVTVTGFLARIVPSILKQYPYLNAI   80 (224)
T ss_dssp             -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT----TCCCCHHHHHHHHHHHHHHHSGGGSBB
T ss_pred             CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHhCHHhheE
Confidence            356899999999999999999 589999999999999999999999863    889999999999999999999999999


Q ss_pred             EeCCCCEEEEcC
Q 017418          360 FNEESLEVILKG  371 (372)
Q Consensus       360 ~~~~~~eIv~~~  371 (372)
                      |++++++|++++
T Consensus        81 ~~~~~~~i~~~~   92 (224)
T 3rqc_A           81 YDETRRVYILKK   92 (224)
T ss_dssp             CCSSTTCCCEEC
T ss_pred             EeCCCCEEEEeC
Confidence            988766788764

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=99.80  E-value=1.6e-19  Score=170.44  Aligned_cols=84  Identities=20%  Similarity=0.372  Sum_probs=77.4

Q ss_pred             cccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEe
Q 017418          283 KTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN  361 (372)
Q Consensus       283 ~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~  361 (372)
                      ++ ||++|||+||++|++|+ ++||||++.|||||+|+++|+++|+    .|.|+||++||+||++.||++||.||++|+
T Consensus        16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~~kls~~~~iikAva~AL~~~P~~Na~~~   90 (250)
T 3l60_A           16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AAPEITPFALTLRLLVIALKHNVILNSTWV   90 (250)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEE
T ss_pred             CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEe
Confidence            45 99999999999999996 8999999999999999999999974    478999999999999999999999999998


Q ss_pred             CC--CCEEEEcC
Q 017418          362 EE--SLEVILKG  371 (372)
Q Consensus       362 ~~--~~eIv~~~  371 (372)
                      ++  +++|++++
T Consensus        91 ~~~~~~~i~~~~  102 (250)
T 3l60_A           91 DSGEGPQVHVHR  102 (250)
T ss_dssp             CTTTSCEEEECS
T ss_pred             ccCCCCeEEEcC
Confidence            75  45898875

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=99.79  E-value=7.4e-20  Score=171.04  Aligned_cols=88  Identities=17%  Similarity=0.411  Sum_probs=79.5

Q ss_pred             CcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418          282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC  359 (372)
Q Consensus       282 ~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~  359 (372)
                      ++++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.+. +.|.|+||++||+||++.||++||.+|++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            456899999999999999995 7999999999999999999999987542 45889999999999999999999999999


Q ss_pred             EeCCCCEEEEcC
Q 017418          360 FNEESLEVILKG  371 (372)
Q Consensus       360 ~~~~~~eIv~~~  371 (372)
                      |+++  +|++++
T Consensus        84 ~~~~--~i~~~~   93 (233)
T 1scz_A           84 IDGD--DVVYHN   93 (233)
T ss_dssp             EETT--EEECCS
T ss_pred             EeCC--EEEEeC
Confidence            9854  788774

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.78  E-value=2.5e-18  Score=136.67  Aligned_cols=79  Identities=24%  Similarity=0.355  Sum_probs=75.8

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD  167 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~  167 (372)
                      .++|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...+
T Consensus         5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~   84 (87)
T 3crk_C            5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE   84 (87)
T ss_dssp             EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred             ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999 899999999998644

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.77  E-value=1.7e-18  Score=139.65  Aligned_cols=81  Identities=40%  Similarity=0.728  Sum_probs=77.2

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      .+++|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+.|..|++|+.|+..+
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~   82 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             C
Q 017418          168 S  168 (372)
Q Consensus       168 ~  168 (372)
                      .
T Consensus        83 ~   83 (93)
T 1k8m_A           83 L   83 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.77  E-value=2.3e-18  Score=146.71  Aligned_cols=79  Identities=25%  Similarity=0.371  Sum_probs=76.1

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD  167 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~  167 (372)
                      .++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++|+..+
T Consensus        27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~  106 (128)
T 1y8o_B           27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE  106 (128)
T ss_dssp             EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred             ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence            5889999999999999999999999999999999999999999999999999999999999998 899999999998654

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3.6e-18  Score=139.02  Aligned_cols=81  Identities=20%  Similarity=0.437  Sum_probs=76.8

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeE-ecccEEEEEecC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV-KVGETLLKLVVG  166 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v-~vG~~la~i~~~  166 (372)
                      ..++|+||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|+.|...
T Consensus         6 ~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~   85 (98)
T 2dnc_A            6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE   85 (98)
T ss_dssp             CCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred             ccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence            3568999999999999999999999999999999999999999999999999999999999999998 999999999865


Q ss_pred             CC
Q 017418          167 DS  168 (372)
Q Consensus       167 ~~  168 (372)
                      ++
T Consensus        86 ~~   87 (98)
T 2dnc_A           86 GE   87 (98)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.74  E-value=8.5e-18  Score=139.23  Aligned_cols=82  Identities=28%  Similarity=0.338  Sum_probs=77.1

Q ss_pred             CCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEE
Q 017418           84 LPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLK  162 (372)
Q Consensus        84 ~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~  162 (372)
                      +||  .++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++
T Consensus         4 ~p~--~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~   81 (108)
T 2dne_A            4 GSS--GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICI   81 (108)
T ss_dssp             CCC--CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEE
T ss_pred             Ccc--ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEE
Confidence            455  4789999999999999999999999999999999999999999999999999999999999999 8999999999


Q ss_pred             EecCC
Q 017418          163 LVVGD  167 (372)
Q Consensus       163 i~~~~  167 (372)
                      |...+
T Consensus        82 i~~~~   86 (108)
T 2dne_A           82 TVGKP   86 (108)
T ss_dssp             EESCH
T ss_pred             EecCc
Confidence            98643

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=99.74  E-value=4.6e-19  Score=166.24  Aligned_cols=87  Identities=16%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             CcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEE
Q 017418          282 DKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF  360 (372)
Q Consensus       282 ~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~  360 (372)
                      .+++||++|||+||++|++| +++||||++.|||+|+|+++|+++|+.++.. .|+||++||+||++.||++||.||++|
T Consensus        12 ~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~-~kls~~~~~ikAv~~Al~~~P~~Na~~   90 (239)
T 3b8k_A           12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSSW   90 (239)
T ss_dssp             CCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTS-SCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred             ceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence            46789999999999999999 5899999999999999999999998755433 699999999999999999999999999


Q ss_pred             eCCCCEEEEcC
Q 017418          361 NEESLEVILKG  371 (372)
Q Consensus       361 ~~~~~eIv~~~  371 (372)
                      +++  +|++++
T Consensus        91 ~~~--~i~~~~   99 (239)
T 3b8k_A           91 MDT--VIRQNH   99 (239)
T ss_dssp             CCC--SSSCSC
T ss_pred             ECC--EEEEeC
Confidence            864  576653

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.73  E-value=1.3e-17  Score=129.77  Aligned_cols=76  Identities=25%  Similarity=0.460  Sum_probs=73.8

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      ++|.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.68  E-value=7.4e-17  Score=124.78  Aligned_cols=75  Identities=41%  Similarity=0.695  Sum_probs=73.1

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ++|.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999985

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.66  E-value=5e-18  Score=132.64  Aligned_cols=76  Identities=24%  Similarity=0.420  Sum_probs=73.2

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      ++|.||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999864

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.66  E-value=2.1e-16  Score=122.97  Aligned_cols=76  Identities=30%  Similarity=0.469  Sum_probs=72.8

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ++|.||++|++  +|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   78 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence            57999999998  99999999999999999999999999999999999999999999999999999999999998643

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.64  E-value=1.2e-15  Score=118.69  Aligned_cols=75  Identities=28%  Similarity=0.390  Sum_probs=71.0

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ++|.||++|++  + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            46899999996  7 999999999999999999999999999999999999999999999999999999999997543

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.61  E-value=3.8e-16  Score=121.90  Aligned_cols=77  Identities=21%  Similarity=0.379  Sum_probs=73.1

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .++|.||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            4578999999 7899999999999999999999999999999999999999999999999999999999999999753

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.46  E-value=5.7e-15  Score=116.59  Aligned_cols=71  Identities=30%  Similarity=0.465  Sum_probs=67.5

Q ss_pred             EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      +|.+|.+      |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++.+|+.|..|++|+.|...+
T Consensus         4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            5788887      9999999999999999999999999999999999999999999999999999999999998654

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.42  E-value=8.5e-13  Score=100.10  Aligned_cols=63  Identities=33%  Similarity=0.431  Sum_probs=61.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+|.+|++++||.|++||+|++++++|...+|+||++|+|.++++.+|+.|..|++|+.|..
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            799999999999999999999999999999999999999999999999999999999999865

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.37  E-value=5.1e-13  Score=105.24  Aligned_cols=64  Identities=19%  Similarity=0.398  Sum_probs=61.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      .|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.+++ .+|+.|..|++|+.|...+
T Consensus        13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            799999999999999999999999999999999999999999999 9999999999999997543

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3e-12  Score=104.01  Aligned_cols=63  Identities=17%  Similarity=0.402  Sum_probs=60.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|. +++++|+.|..|++|+.|...
T Consensus        25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~   87 (100)
T 2dn8_A           25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD   87 (100)
T ss_dssp             CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence            799999999999999999999999999999999999999999 999999999999999999754

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.35  E-value=3.9e-12  Score=97.72  Aligned_cols=71  Identities=28%  Similarity=0.390  Sum_probs=65.2

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      +...|.-|.      .|+|.+|++++||.|++||+|++++++|+..+|+||++|+|.++++.+|+.|..|++|+.|+
T Consensus         7 ~~~~v~a~~------~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A            7 GEGEIPAPL------AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             CSSEEEBSS------SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCeEEECCC------CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            444566554      79999999999999999999999999999999999999999999999999999999999874

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.34  E-value=2.8e-13  Score=109.03  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             eEEEEccCCCCCc----ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           89 IVDVPLAQTGEGI----AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        89 ~~~i~~P~lg~~~----~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ...|.+|...+..    ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++.+|+.|..|++|+.|+
T Consensus        15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            3467888887654    589999999999999999999999999999999999999999999999999999999998874

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.32  E-value=6.9e-12  Score=95.29  Aligned_cols=62  Identities=29%  Similarity=0.391  Sum_probs=60.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|.+|++++||.|++||+|++++++|...+|+||++|+|.++++.+|+.|..|++|+.|+
T Consensus        13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            79999999999999999999999999999999999999999999999999999999999874

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.31  E-value=6.9e-12  Score=97.32  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=58.7

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|.+       |++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus        12 ~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           12 VGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            577777       59999999999999999999999999999999999999999999999999999874

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.30  E-value=1.5e-12  Score=144.67  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=61.8

Q ss_pred             HHHhcccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCC--CEEEEcC
Q 017418          297 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES--LEVILKG  371 (372)
Q Consensus       297 ~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~--~eIv~~~  371 (372)
                      +|++|+++||||++.+||||+|+++|+++|+.++ +.|+||||++||+||++.||++||.||++|++++  .+|++++
T Consensus         1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~   78 (1113)
T 2xt6_A            1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPA   78 (1113)
T ss_dssp             ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCS
T ss_pred             ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeC
Confidence            6888989999999999999999999999997553 5689999999999999999999999999998653  2688764

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=99.30  E-value=3.6e-12  Score=117.86  Aligned_cols=62  Identities=18%  Similarity=0.296  Sum_probs=55.6

Q ss_pred             HhcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          299 SMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       299 ~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      -.+.++||||++.|||||+|+++|++         .|+||++||+|||+.||++||.+|++|+++  +|++++
T Consensus        25 f~~~~~P~~t~~~evDvt~l~~~rk~---------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~   86 (219)
T 1q23_A           25 FQSVAQCTYNQTVQLDITAFLKTVKK---------NKHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWD   86 (219)
T ss_dssp             HTTTTCEEEEEEEEEECHHHHHHHHH---------TTCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEES
T ss_pred             hcCCCCcEEEEEEEEEhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEec
Confidence            35568999999999999999999975         279999999999999999999999999854  788875

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-11  Score=100.16  Aligned_cols=66  Identities=23%  Similarity=0.268  Sum_probs=62.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      .|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++.+|+.|..|++|+.|...+.
T Consensus        22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~   87 (99)
T 2ejm_A           22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES   87 (99)
T ss_dssp             SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence            799999999999999999999999999999999999999999999999999999999999976443

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=99.27  E-value=5.7e-12  Score=116.01  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             hcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       300 ~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      .+.++||||++.|||||+|+++|++         .|+||++||+|||+.||++||.+|++|+++  +|++++
T Consensus        21 ~~~~~P~~~~~~evDvt~l~~~rk~---------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~   81 (213)
T 3cla_A           21 RHRLPCGFSLTSKIDITTLKKSLDD---------SAYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWD   81 (213)
T ss_dssp             HHTSCCEEEEEEEEECHHHHHHHHT---------SSCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEES
T ss_pred             hCCCCceEEEEEEEEHHHHHHHHHH---------hCCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEe
Confidence            4467999999999999999999963         379999999999999999999999999854  788875

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.26  E-value=3.5e-12  Score=87.13  Aligned_cols=38  Identities=47%  Similarity=0.665  Sum_probs=36.5

Q ss_pred             cCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418          203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  240 (372)
Q Consensus       203 ~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~  240 (372)
                      .+||++|+||+++|||++.|.|||++|||+++||++|+
T Consensus         2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   39 (41)
T 2eq9_C            2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA   39 (41)
T ss_dssp             CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHH
T ss_pred             CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHh
Confidence            57999999999999999999999999999999999986

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.24  E-value=4.8e-12  Score=86.03  Aligned_cols=37  Identities=41%  Similarity=0.681  Sum_probs=35.8

Q ss_pred             CChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418          204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  240 (372)
Q Consensus       204 asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~  240 (372)
                      +||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence            6999999999999999999999999999999999886

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=1.1e-11  Score=114.52  Aligned_cols=62  Identities=13%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             hcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418          300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG  371 (372)
Q Consensus       300 ~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~  371 (372)
                      .+.++||||++.|||||+|+++|++.         |+||++||+|||+.||++||.+|++|++ +++|++++
T Consensus        23 ~~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~n~~~~~-~~~i~~~~   84 (217)
T 2i9d_A           23 RHFQNPQLSITSEVECGGARQRAKAA---------GQSFFLHYLYAVLRAANEIPEFRYRIDP-DGRVVLYD   84 (217)
T ss_dssp             TTCSBCEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHSGGGGEEECT-TSCEEEES
T ss_pred             hCCCCceEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCHHhheEEcC-CCEEEEec
Confidence            44689999999999999999999752         7999999999999999999999999983 34788875

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.22  E-value=5.3e-12  Score=92.75  Aligned_cols=42  Identities=55%  Similarity=0.791  Sum_probs=38.9

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  242 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~  242 (372)
                      .+.+||+||+||+++||||+.|+|||++|||+++||++|+..
T Consensus         7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~   48 (58)
T 3rnm_E            7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   48 (58)
T ss_dssp             -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred             CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence            577999999999999999999999999999999999999753

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=99.22  E-value=4.3e-12  Score=86.25  Aligned_cols=37  Identities=38%  Similarity=0.602  Sum_probs=34.9

Q ss_pred             CChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418          204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  240 (372)
Q Consensus       204 asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~  240 (372)
                      +||++|+||+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL   38 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence            6999999999999999999999999999999999875

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.16  E-value=5.1e-11  Score=126.79  Aligned_cols=62  Identities=26%  Similarity=0.389  Sum_probs=60.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus       620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            69999999999999999999999999999999999999999999999999999999999884

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=99.15  E-value=2.1e-11  Score=86.54  Aligned_cols=40  Identities=45%  Similarity=0.718  Sum_probs=37.9

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  240 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~  240 (372)
                      .+.+||++|+||+++||||+.|.|||++|||+++||++|+
T Consensus         6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~   45 (49)
T 1w85_I            6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL   45 (49)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHH
T ss_pred             cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHH
Confidence            4568999999999999999999999999999999999997

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=99.14  E-value=3.7e-11  Score=89.53  Aligned_cols=42  Identities=45%  Similarity=0.632  Sum_probs=39.2

Q ss_pred             ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhc
Q 017418          202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK  243 (372)
Q Consensus       202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~  243 (372)
                      +.+||++|+||+++||||+.|.|||++|||+++||++|+...
T Consensus         5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~   46 (62)
T 1w4i_A            5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET   46 (62)
T ss_dssp             SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhcc
Confidence            568999999999999999999999999999999999998644

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=99.11  E-value=2e-11  Score=87.41  Aligned_cols=40  Identities=28%  Similarity=0.394  Sum_probs=37.5

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  240 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~  240 (372)
                      .+.+||++|+||+++||||+.|.|||++|||+++||++|+
T Consensus         9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~   48 (51)
T 1bal_A            9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL   48 (51)
T ss_dssp             SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred             CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence            4678999999999999999999999999999999999875

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.09  E-value=2.5e-10  Score=128.28  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=59.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      .|+|.+|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|++|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            5999999999999999999999999999999999999999999999999999999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.08  E-value=2.2e-10  Score=128.05  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +...|.-|-      .|+|++|+|++||.|++||+|++||+||++++|+||++|+|.++++++|+.|.+|++|+.|+.+
T Consensus      1076 ~~~~v~ap~------~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1076 NPSHIGAQM------PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             CSSEEECSS------SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             CCceeecCc------eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            344566554      7999999999999999999999999999999999999999999999999999999999999753

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=99.07  E-value=1.9e-10  Score=87.66  Aligned_cols=42  Identities=52%  Similarity=0.763  Sum_probs=39.2

Q ss_pred             CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418          201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  242 (372)
Q Consensus       201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~  242 (372)
                      .+.++|+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus        15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            456899999999999999999999999999999999999864

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=99.04  E-value=7.9e-11  Score=88.22  Aligned_cols=41  Identities=29%  Similarity=0.349  Sum_probs=38.5

Q ss_pred             ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418          202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  242 (372)
Q Consensus       202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~  242 (372)
                      +.+||+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus        10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   50 (64)
T 2f60_K           10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL   50 (64)
T ss_dssp             HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            56899999999999999999999999999999999999854

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.89  E-value=1.8e-09  Score=89.30  Aligned_cols=65  Identities=22%  Similarity=0.393  Sum_probs=59.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCcee-----------------------------eEEecCCCeEEEEEccCCCCe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKAT-----------------------------IEITSRYKGKVAQLLHAPGNI  153 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~-----------------------------~ei~ap~~G~v~~i~~~eg~~  153 (372)
                      .|+|.+|+|++||.|++||+|+++++.++.                             ..|+||++|+|..+.+.+|+.
T Consensus         9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~   88 (116)
T 2k32_A            9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY   88 (116)
T ss_dssp             CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred             CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence            799999999999999999999999988654                             489999999999999999999


Q ss_pred             Eecc-cEEEEEecCC
Q 017418          154 VKVG-ETLLKLVVGD  167 (372)
Q Consensus       154 v~vG-~~la~i~~~~  167 (372)
                      |..| ++|+.|...+
T Consensus        89 v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           89 VSASTTELVRVTNLN  103 (116)
T ss_dssp             ECTTTSCCEEEECSC
T ss_pred             EcCCCcEEEEEECCC
Confidence            9999 9999997543

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.82  E-value=1.2e-09  Score=116.46  Aligned_cols=62  Identities=19%  Similarity=0.309  Sum_probs=60.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|+|++|+|++||.|++||+|++||+||++.+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            79999999999999999999999999999999999999999999999999999999999873

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.76  E-value=5e-09  Score=117.34  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=57.7

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      ..|.-|-      .|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1096 ~~v~ap~------~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1096 AHVGAPM------PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             TEEECSS------CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             ceeeCCC------CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            4455554      79999999999999999999999999999999999999999999999999999999999875

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.72  E-value=1.4e-08  Score=86.96  Aligned_cols=71  Identities=21%  Similarity=0.388  Sum_probs=59.9

Q ss_pred             EEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEE---ccCCCCeEe---ccc-EEEE
Q 017418           91 DVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-TLLK  162 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i---~~~eg~~v~---vG~-~la~  162 (372)
                      .+.+|.+|+      |+.+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++   ++..++.|.   .|+ .|+.
T Consensus        38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~  111 (136)
T 1zko_A           38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK  111 (136)
T ss_dssp             HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred             hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence            345666543      555544 99999999999999999999999999999999999   888999988   888 8999


Q ss_pred             EecCC
Q 017418          163 LVVGD  167 (372)
Q Consensus       163 i~~~~  167 (372)
                      |...+
T Consensus       112 i~~~~  116 (136)
T 1zko_A          112 MEISD  116 (136)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            88543

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.29  E-value=3.9e-07  Score=77.51  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=53.6

Q ss_pred             EEEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCC---CeEe---ccc-EEE
Q 017418           90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLL  161 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg---~~v~---vG~-~la  161 (372)
                      .++.+|.+|      .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++...+   +.|.   -|+ -|+
T Consensus        28 td~a~~~lG------~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (131)
T 1hpc_A           28 TDHAQDHLG------EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI  101 (131)
T ss_dssp             CHHHHHHHC------SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehhhcccCC------CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence            334556654      4666655 9999999999999999999999999999999999975543   3442   344 677


Q ss_pred             EEecC
Q 017418          162 KLVVG  166 (372)
Q Consensus       162 ~i~~~  166 (372)
                      .|...
T Consensus       102 ~i~~~  106 (131)
T 1hpc_A          102 KIKPT  106 (131)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            66643

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.27  E-value=1e-06  Score=74.68  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=53.1

Q ss_pred             EEEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCC---CeEe---ccc-EEE
Q 017418           90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLL  161 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg---~~v~---vG~-~la  161 (372)
                      .++.+|.+|      .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++...+   +.|.   -|+ -|+
T Consensus        29 td~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~  102 (128)
T 3a7l_A           29 TEHAQELLG------DMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF  102 (128)
T ss_dssp             CHHHHHHHC------SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred             ehHHhccCC------ceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence            344566664      3555544 9999999999999999999999999999999999976443   3333   344 666


Q ss_pred             EEecC
Q 017418          162 KLVVG  166 (372)
Q Consensus       162 ~i~~~  166 (372)
                      .|...
T Consensus       103 ~i~~~  107 (128)
T 3a7l_A          103 KIKAS  107 (128)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            66643

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.21  E-value=1.9e-06  Score=73.06  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             EEEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC---CCCeE---eccc-EEE
Q 017418           90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA---PGNIV---KVGE-TLL  161 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~---eg~~v---~vG~-~la  161 (372)
                      .++..|.+|      .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++..   ..+.|   +-|+ -|+
T Consensus        28 t~~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (128)
T 1onl_A           28 TDYAQDALG------DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF  101 (128)
T ss_dssp             CHHHHHHHC------SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehHHhhcCC------CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence            334456654      3555544 99999999999999999999999999999999999754   34444   4555 677


Q ss_pred             EEecC
Q 017418          162 KLVVG  166 (372)
Q Consensus       162 ~i~~~  166 (372)
                      .|...
T Consensus       102 ~i~~~  106 (128)
T 1onl_A          102 RLKPR  106 (128)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            77643

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.05  E-value=5.5e-06  Score=80.51  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.+++|++||.|++||+|+++++...                                                   
T Consensus        65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~  144 (359)
T 3lnn_A           65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE  144 (359)
T ss_dssp             CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999997532                                                   


Q ss_pred             -------------------------eeEEecCCCeEEEEEccCCCCeEec-ccEEEEEecC
Q 017418          132 -------------------------TIEITSRYKGKVAQLLHAPGNIVKV-GETLLKLVVG  166 (372)
Q Consensus       132 -------------------------~~ei~ap~~G~v~~i~~~eg~~v~v-G~~la~i~~~  166 (372)
                                               ...|+||++|+|..+.+..|+.|.. |++|+.|...
T Consensus       145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~  205 (359)
T 3lnn_A          145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL  205 (359)
T ss_dssp             HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred             HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence                                     2579999999999999999999999 9999988753

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.05  E-value=6.6e-06  Score=82.24  Aligned_cols=63  Identities=13%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             eEEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------ceee
Q 017418          103 ECELLKWFV-KEGDEIEEFQPLCAVQSD------------------------------------------------KATI  133 (372)
Q Consensus       103 eG~I~~w~v-~eGd~V~~Gd~l~~vetd------------------------------------------------K~~~  133 (372)
                      .|.|.+++| ++||.|++||+|+++++.                                                ....
T Consensus       129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  208 (413)
T 3ne5_B          129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF  208 (413)
T ss_dssp             CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred             CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence            799999998 999999999999999952                                                1246


Q ss_pred             EEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+||++|+|.++.+.+|+.|..|++|+.|..
T Consensus       209 ~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~  240 (413)
T 3ne5_B          209 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG  240 (413)
T ss_dssp             EEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred             EEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence            89999999999999999999999999999864

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.03  E-value=1.8e-06  Score=81.05  Aligned_cols=64  Identities=25%  Similarity=0.300  Sum_probs=56.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDK----------------------------------------------------  130 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK----------------------------------------------------  130 (372)
                      .|+|.+|+|++||.|++||+|+++++..                                                    
T Consensus        30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~  109 (277)
T 2f1m_A           30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  109 (277)
T ss_dssp             CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence            7999999999999999999999998642                                                    


Q ss_pred             -------------------eeeEEecCCCeEEEEEccCCCCeEecc--cEEEEEecC
Q 017418          131 -------------------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG  166 (372)
Q Consensus       131 -------------------~~~ei~ap~~G~v~~i~~~eg~~v~vG--~~la~i~~~  166 (372)
                                         ....|+||++|+|..+.+.+|+.|..|  ++|+.|...
T Consensus       110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~  166 (277)
T 2f1m_A          110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  166 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence                               124799999999999999999999999  589988653

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.99  E-value=6.5e-06  Score=79.45  Aligned_cols=63  Identities=24%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.+++|++||.|++||+|+++++...                                                   
T Consensus        39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  118 (341)
T 3fpp_A           39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN  118 (341)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred             CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence            79999999999999999999999987410                                                   


Q ss_pred             ----------------------------------eeEEecCCCeEEEEEccCCCCeEecccE---EEEEec
Q 017418          132 ----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLVV  165 (372)
Q Consensus       132 ----------------------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~---la~i~~  165 (372)
                                                        ...|+||++|+|..+.+..|+.|..|++   |+.|..
T Consensus       119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~  189 (341)
T 3fpp_A          119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD  189 (341)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence                                              1459999999999999999999999987   887764

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.75  E-value=1e-05  Score=79.35  Aligned_cols=63  Identities=19%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.+++|++||.|++||+|++|++...                                                   
T Consensus        51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~  130 (369)
T 1vf7_A           51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  130 (369)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999986321                                                   


Q ss_pred             ------eeEEecCCCeEEEEEccCCCCeEecc--cEEEEEec
Q 017418          132 ------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV  165 (372)
Q Consensus       132 ------~~ei~ap~~G~v~~i~~~eg~~v~vG--~~la~i~~  165 (372)
                            ...|+||++|+|..+.+.+|+.|..|  ++|+.|..
T Consensus       131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~  172 (369)
T 1vf7_A          131 ARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ  172 (369)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred             HHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence                  25799999999999999999999995  88998864

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.71  E-value=5.2e-05  Score=63.85  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=40.3

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418          104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA  149 (372)
Q Consensus       104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~  149 (372)
                      |.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++...
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~   78 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA   78 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence            55666644 78999999999999999999999999999999998643

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.59  E-value=9.2e-05  Score=63.59  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=39.4

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418          104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH  148 (372)
Q Consensus       104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~  148 (372)
                      |.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.-
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~   99 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINA   99 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECG
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            55555533 7899999999999999999999999999999998863

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.52  E-value=9.7e-05  Score=63.09  Aligned_cols=44  Identities=14%  Similarity=0.222  Sum_probs=39.0

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            55655533 789999999999999999999999999999999985

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.31  E-value=1.1e-05  Score=78.69  Aligned_cols=62  Identities=24%  Similarity=0.362  Sum_probs=53.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|+|.+++|++||.|++||+|+++++...                                                   
T Consensus        40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  119 (369)
T 4dk0_A           40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT  119 (369)
T ss_dssp             CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred             CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence            69999999999999999999999986421                                                   


Q ss_pred             ----------------------------------eeEEecCCCeEEEEEccCCCCeEecccE---EEEEe
Q 017418          132 ----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLV  164 (372)
Q Consensus       132 ----------------------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~---la~i~  164 (372)
                                                        ...|+||++|+|..+.+.+|+.|..|++   |+.|.
T Consensus       120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA  189 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence                                              1349999999999999999999999998   65554

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.29  E-value=0.00036  Score=60.61  Aligned_cols=44  Identities=16%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~-v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+-+. -++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            5555553 3789999999999999999999999999999998886

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.81  E-value=0.0025  Score=61.81  Aligned_cols=61  Identities=20%  Similarity=0.262  Sum_probs=50.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .| +...+++.||.|++||+|++|..    .....+|+||.+|+|...  ...-.|..|+.|+.|...
T Consensus       265 ~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          265 DG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             CE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred             Ce-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence            45 66778999999999999999986    356789999999999554  456788899999998753

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=96.70  E-value=0.0031  Score=61.71  Aligned_cols=61  Identities=20%  Similarity=0.126  Sum_probs=52.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .| +++..++.||.|++||+|+.|..    .+...+|.||.+|+|...  .....|..|+.|+.|...
T Consensus       275 ~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          275 TG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED  339 (354)
T ss_dssp             CE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred             CE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence            45 77888999999999999999987    478899999999999655  577889999999999754

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.64  E-value=0.004  Score=61.32  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=50.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe------CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQS------DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vet------dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      +=|...+++.||.|++||+|++|-.      .....+|+||.+|+|.  .....-.|..|+.|+.|..
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASASVHQGTELYKVMT  363 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSSEECTTCEEEEEEE
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCCccCCCCEEEEEee
Confidence            4455689999999999999999987      4577899999999994  4456678999999988864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.60  E-value=0.00098  Score=53.34  Aligned_cols=46  Identities=20%  Similarity=0.316  Sum_probs=42.0

Q ss_pred             CCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          120 FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       120 Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      |..+|.++.++....|.||.+|+|.++++++|+.|..|++|+.++.
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~   50 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   50 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            5566888888888899999999999999999999999999999985

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=95.93  E-value=0.0087  Score=44.16  Aligned_cols=33  Identities=12%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             EEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            378999999999999999999999999999864

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=95.85  E-value=0.012  Score=43.58  Aligned_cols=34  Identities=32%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|.|+.+|+|.++++++|+.|+.|++|+.++..
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   39 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM   39 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence            4689999999999999999999999999999863

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.81  E-value=0.01  Score=44.45  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=32.1

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~   42 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence            35789999999999999999999999999999863

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.55  E-value=0.014  Score=47.36  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +.|.|+.+|+|.++++++|+.|+.|++|+.|+..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            5789999999999999999999999999999854

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=95.47  E-value=0.016  Score=50.21  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------  146 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------  146 (372)
                      ..|.-|-      .|+|+.+. +..|.|-.    |+.++...++   ..+.||++|+|..+                   
T Consensus         8 ~~i~aP~------~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi   77 (154)
T 2gpr_A            8 LKVLAPC------DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL   77 (154)
T ss_dssp             EEEECSS------SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred             CEEEecC------CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence            4566665      89999974 88888766    8999988776   48999999999874                   


Q ss_pred             ----------------ccCCCCeEecccEEEEEec
Q 017418          147 ----------------LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ----------------~~~eg~~v~vG~~la~i~~  165 (372)
                                      ++++||.|..|++|+.++.
T Consensus        78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence                            8899999999999999873

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.45  E-value=0.021  Score=49.83  Aligned_cols=66  Identities=14%  Similarity=0.257  Sum_probs=55.5

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------  146 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------  146 (372)
                      ..|.-|-      .|+|+.+. +..|.|-.    |+.++..-++   ..++||++|+|..+                   
T Consensus        13 ~~i~aP~------~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLi   82 (161)
T 1f3z_A           13 IEIIAPL------SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   82 (161)
T ss_dssp             EEEECSS------CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cEEEecC------CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEE
Confidence            3466665      89999975 78888766    8999987776   47899999999988                   


Q ss_pred             ----------------ccCCCCeEecccEEEEEec
Q 017418          147 ----------------LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ----------------~~~eg~~v~vG~~la~i~~  165 (372)
                                      ++++||.|..|++|+.++.
T Consensus        83 HiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           83 HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             EECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence                            8899999999999999973

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=95.36  E-value=0.027  Score=54.28  Aligned_cols=60  Identities=18%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      +-+...+++.|+.|++||+|+++-.    .+...+|.||.+|+|.-.  ...-.|..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEee
Confidence            3355577999999999999999954    467789999999999544  45667888888888764

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.01  E-value=0.013  Score=45.08  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|.||.+|+|.++++++|+.|..|++|+.|+..
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   39 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM   39 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEECS
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEEec
Confidence            4799999999999999999999999999999853

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=94.98  E-value=0.019  Score=50.15  Aligned_cols=59  Identities=19%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418          103 ECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL--------------------------------  146 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i--------------------------------  146 (372)
                      .|+|+.+ .+..|.|-.    |+.++..-++   ..++||++|+|..+                                
T Consensus        20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g   95 (162)
T 1ax3_A           20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   95 (162)
T ss_dssp             SEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred             ceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence            7999997 778888766    8999977764   47899999999988                                


Q ss_pred             ---ccCCCCeEecccEEEEEec
Q 017418          147 ---LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ---~~~eg~~v~vG~~la~i~~  165 (372)
                         ++++||.|..|++|+.++.
T Consensus        96 F~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           96 FTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             EEESCCCCSEECSEEEEEEECH
T ss_pred             cEEEEeCCCEEcCCCEEEEECH
Confidence               8889999999999999974

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=94.26  E-value=0.046  Score=50.66  Aligned_cols=52  Identities=10%  Similarity=0.045  Sum_probs=38.7

Q ss_pred             CCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          113 EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       113 eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+.
T Consensus         4 ~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~   55 (277)
T 2f1m_A            4 TEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   55 (277)
T ss_dssp             ------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred             eeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence            33333334445667664 46789999999999999999999999999999975

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=93.93  E-value=0.05  Score=48.78  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEE
Q 017418          108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA  144 (372)
Q Consensus       108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~  144 (372)
                      .++|++|+.|++||.||+-.      .|-+.++|+|.
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~   52 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   52 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence            67899999999999999865      77788888774

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=93.87  E-value=0.045  Score=43.42  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=32.4

Q ss_pred             eeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       131 ~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      -...|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus        13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   48 (99)
T 2ejm_A           13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM   48 (99)
T ss_dssp             CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred             CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence            345689999999999999999999999999999853

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=93.77  E-value=0.049  Score=41.10  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             eEEecCCCeEEEEE-------ccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQL-------LHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i-------~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|.||..|+|.++       ++++|+.|..|++|+.|+..
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~   45 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM   45 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence            46899999999998       89999999999999999864

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=93.52  E-value=0.031  Score=44.00  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=31.6

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   59 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM   59 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence            45689999999999999999999999999999853

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=93.51  E-value=0.053  Score=52.12  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=43.5

Q ss_pred             CCCCeecCCCeEEEEEeC-ceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          112 KEGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       112 ~eGd~V~~Gd~l~~vetd-K~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      +.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   91 (359)
T 3lnn_A           36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA   91 (359)
T ss_dssp             EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred             eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            333333333455677765 5678999999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=93.33  E-value=0.086  Score=39.38  Aligned_cols=26  Identities=15%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      .|+|.++++++||.|..|++|+.|++
T Consensus        52 ~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (77)
T 2l5t_A           52 RGKIVKILYREGQVVPVGSTLLQIDT   77 (77)
T ss_dssp             CEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred             CEEEEEEEeCCcCEECCCCEEEEEEC
Confidence            89999999999999999999999874

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=93.26  E-value=0.091  Score=50.09  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            4444444443445566655 467899999999999999999999999999999754

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=93.06  E-value=0.16  Score=38.06  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=29.4

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      ..+|.-|.      .|+|.++++++||.|..|++|+.|+.
T Consensus        44 ~~~i~Ap~------~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           44 VMEVLAEA------DGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEEECSS------CEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eEEEEcCC------CEEEEEEEcCCcCEECCCCEEEEEec
Confidence            45566665      89999999999999999999999875

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=92.94  E-value=0.17  Score=38.98  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=29.9

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGD-EIEEFQPLCAVQSD  129 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd-~V~~Gd~l~~vetd  129 (372)
                      ..+|.-|.      .|+|.++++++|| .|..|++|+.|+..
T Consensus        48 ~~~i~Ap~------~G~v~~~~v~~G~~~V~~G~~l~~i~~~   83 (87)
T 3crk_C           48 TIGFEVQE------EGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (87)
T ss_dssp             EEEEECCS------CEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred             cceeecCc------CcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence            45566665      8999999999999 89999999999864

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=92.65  E-value=0.11  Score=38.96  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      ..+|.-|.      .|+|.++++++||.|..|++|+.|+..
T Consensus        43 ~~~i~Ap~------~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A           43 SMEVPAPF------AGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEEBSS------CEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             eEEEeCCC------CEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            45677776      899999999999999999999999853

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=92.33  E-value=0.14  Score=44.63  Aligned_cols=45  Identities=18%  Similarity=0.094  Sum_probs=40.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceee-EEecCCCeEEEEEc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLL  147 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~-ei~ap~~G~v~~i~  147 (372)
                      ||.-+-..+.+||.|.+||.|+-|.|.|-++ -++||.+|+|.-+.
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~  153 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN  153 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence            7778888999999999999999999999875 49999999997665

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=92.16  E-value=0.19  Score=39.33  Aligned_cols=27  Identities=15%  Similarity=0.215  Sum_probs=25.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      .|+|.++++++||.|..|++|+.|+..
T Consensus        55 ~G~V~~i~v~~G~~V~~G~~l~~i~~~   81 (93)
T 1k8m_A           55 DGVIKKLYYNLDDIAYVGKPLVDIETE   81 (93)
T ss_dssp             CEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            899999999999999999999999853

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=91.63  E-value=0.24  Score=44.24  Aligned_cols=47  Identities=13%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEec
Q 017418          108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKV  156 (372)
Q Consensus       108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~v  156 (372)
                      .++|++||.|++||.||+.  |..+..|-+.++|+|.--.+.+|.++..
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~e  109 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTITR  109 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEEE
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceEE
Confidence            6799999999999999977  7999999999999998777788766553

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=91.60  E-value=0.16  Score=49.64  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEE
Q 017418          108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA  144 (372)
Q Consensus       108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~  144 (372)
                      .++|++||.|++||.||+-+      .|-+..+|+|.
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~   92 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   92 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence            78999999999999999865      56666666663

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=91.52  E-value=0.24  Score=37.12  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      ..+|.-|.      .|+|.++++++||.|..|++|+.|+..
T Consensus        41 ~~~i~Ap~------~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           41 SMEVPSPK------AGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEEECSS------SSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEECCC------CEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            34566665      799999999999999999999999753

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=91.10  E-value=0.3  Score=40.79  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=25.2

Q ss_pred             eEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418          103 ECELLKWFVKEGD-EIEEFQPLCAVQSD  129 (372)
Q Consensus       103 eG~I~~w~v~eGd-~V~~Gd~l~~vetd  129 (372)
                      .|+|.++++++|| .|..|++|++|+..
T Consensus        78 ~G~V~~i~v~~Gd~~V~~G~~L~~i~~~  105 (128)
T 1y8o_B           78 EGYLAKILVPEGTRDVPLGTPLCIIVEK  105 (128)
T ss_dssp             CEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred             CeEEEEEEeCCCCeeecCCCEEEEEecC
Confidence            8999999999998 89999999999854

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.87  E-value=0.28  Score=38.84  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=30.3

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCee-cCCCeEEEEEeCc
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEI-EEFQPLCAVQSDK  130 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V-~~Gd~l~~vetdK  130 (372)
                      ..+|.-|.      .|+|.++++++||.| ..|++|+.|+.+.
T Consensus        50 ~~~i~Ap~------~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~   86 (98)
T 2dnc_A           50 VVTLDASD------DGILAKIVVEEGSKNIRLGSLIGLIVEEG   86 (98)
T ss_dssp             EEEEECSS------CEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred             eeEEeCCC------CEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence            44566655      899999999999999 9999999998653

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=90.45  E-value=0.18  Score=48.93  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=36.6

Q ss_pred             eEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       122 ~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      .-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~   77 (369)
T 1vf7_A           34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   77 (369)
T ss_dssp             EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            34455543 356899999999999999999999999999999753

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=90.41  E-value=0.24  Score=49.03  Aligned_cols=54  Identities=19%  Similarity=0.192  Sum_probs=40.5

Q ss_pred             CCCeecCCCeEEEEEeC-ceeeEEecCCCeEEEEEcc-CCCCeEecccEEEEEecC
Q 017418          113 EGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG  166 (372)
Q Consensus       113 eGd~V~~Gd~l~~vetd-K~~~ei~ap~~G~v~~i~~-~eg~~v~vG~~la~i~~~  166 (372)
                      .|+.-..=.....|+.| .-...|.++.+|+|.++++ ++|+.|+.|++|+.|+..
T Consensus       101 ~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~  156 (413)
T 3ne5_B          101 RGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  156 (413)
T ss_dssp             EECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred             EeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence            33333333344455543 4467899999999999998 999999999999999853

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=90.22  E-value=0.17  Score=38.16  Aligned_cols=31  Identities=16%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             ecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          136 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       136 ~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      -++..|.|.++++++|+.|..|++|+.++..
T Consensus        11 g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~   41 (81)
T 1gjx_A           11 GGHENVDIIAVEVNVGDTIAVDDTLITLETD   41 (81)
T ss_dssp             SSCSSEEEEEECCCSSCBCCSSCCCEEEECS
T ss_pred             CCCCcEEEEEEEcCCCCEECCCCEEEEEEeC
Confidence            3578999999999999999999999999864

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=90.17  E-value=0.22  Score=37.98  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418           88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus        88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      ....|.-|.      .|+|.++++++||.|..|++|+.|+.+
T Consensus        38 ~~~~i~Ap~------~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           38 ASMEVPAPF------AGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             SEEEEECSS------CBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             cEEEEECCC------CEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            356677776      899999999999999999999999864

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=89.82  E-value=0.37  Score=38.89  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGD-EIEEFQPLCAVQSD  129 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd-~V~~Gd~l~~vetd  129 (372)
                      ..+|.-|.      .|+|.++++++|| .|..|++|++|+..
T Consensus        50 ~~~i~Ap~------~G~V~~i~v~~G~~~V~~G~~l~~i~~~   85 (108)
T 2dne_A           50 TVGFESLE------ECYMAKILVAEGTRDVPIGAIICITVGK   85 (108)
T ss_dssp             EEEEECSS------SEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred             eeEEeCCC------CEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence            44555554      8999999999999 89999999999854

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=88.68  E-value=0.2  Score=44.82  Aligned_cols=46  Identities=26%  Similarity=0.385  Sum_probs=34.6

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEE--------------------------E--ccCCCCeEecccEEEE
Q 017418          111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ--------------------------L--LHAPGNIVKVGETLLK  162 (372)
Q Consensus       111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~--------------------------i--~~~eg~~v~vG~~la~  162 (372)
                      |++|+.|+.||+|+   -|   ..|-|..+|+|.-                          +  +|++||.|..|+.|+.
T Consensus        85 V~dG~~V~~GdvLA---Kd---~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D  158 (193)
T 2xha_A           85 LRVGTKVKQGLPLS---KN---EEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE  158 (193)
T ss_dssp             CCTTCEECTTSBSS---TT---SCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred             cCCCCEEcCCCEEe---cC---CeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence            89999999999998   22   3345666666531                          3  7889999999998874

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=87.10  E-value=0.15  Score=49.06  Aligned_cols=55  Identities=24%  Similarity=0.355  Sum_probs=42.0

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence            3444444444455566643 456899999999999999999999999999999754

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=86.55  E-value=1.1  Score=39.58  Aligned_cols=67  Identities=12%  Similarity=0.268  Sum_probs=50.6

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEecCCCeEEEEE------------------
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL------------------  146 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V----~~Gd~l~~vetdK~~~ei~ap~~G~v~~i------------------  146 (372)
                      ...|.-|-      +|+++.+ -+.-|.|    --|+-++..=++.   .|.||++|+|..+                  
T Consensus        34 ~~~i~aPv------~G~vi~L-~eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL  103 (183)
T 3our_B           34 AIEIIAPL------SGEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELF  103 (183)
T ss_dssp             CEEEECSS------CEEEEEG-GGSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceEEEeec------ceEEEEc-hhCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence            34566665      7999875 4556655    2388888765553   7899999999887                  


Q ss_pred             -----------------ccCCCCeEecccEEEEEec
Q 017418          147 -----------------LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 -----------------~~~eg~~v~vG~~la~i~~  165 (372)
                                       ++++||.|+.|++|+.++.
T Consensus       104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             EEecccccccCCccceEEEeCcCEEcCCCEEEEECH
Confidence                             5779999999999999874

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=85.79  E-value=0.68  Score=48.96  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.||..|+|.++++++||.|..|++|++++..
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam  646 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM  646 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence            45699999999999999999999999999999853

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=82.82  E-value=0.17  Score=38.20  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             CCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          138 RYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       138 p~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..+|+|.++++++|+.|..|++|+.++..
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   42 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIETD   42 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence            46899999999999999999999999754

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=81.21  E-value=0.58  Score=40.34  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=36.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce--------e-eEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------T-IEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------~-~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      +|+=-+.+|++||+|++||+|+++.-++.        + +-+.- .+  +..+....+..|..|+.|..+
T Consensus        87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~  153 (154)
T 2gpr_A           87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTCEEEEE
T ss_pred             CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCCEEEEe
Confidence            34445689999999999999999975432        1 22222 11  112333345667888887765

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=80.68  E-value=1.4  Score=49.62  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=28.3

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEE
Q 017418          108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA  144 (372)
Q Consensus       108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~  144 (372)
                      .++|++||.|++||.||+.  |--+..|-+.++|+|.
T Consensus      1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D         1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp             EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred             EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence            6789999999999999987  5566677777777664

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=80.48  E-value=1  Score=43.67  Aligned_cols=49  Identities=10%  Similarity=0.057  Sum_probs=39.4

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       110 ~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .++.|+.|++||+|+++- |   .+|.+|++|++.-  .. .-.|..|+.++.+..
T Consensus       280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~  328 (350)
T 2bco_A          280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVC  328 (350)
T ss_dssp             TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEE
T ss_pred             cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEE
Confidence            478999999999999984 4   6889999998743  44 678888988877754

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=80.22  E-value=1.4  Score=49.40  Aligned_cols=34  Identities=24%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ..|.||..|+|.++++++||.|..|++|++|+..
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAM 1111 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEESS
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence            4799999999999999999999999999999854

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=80.08  E-value=1.5  Score=49.54  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418          132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus       132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ...|.||..|+|.++++++||.|+.|++|++|+..
T Consensus      1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 1201 (1236)
T 3va7_A         1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAM 1201 (1236)
T ss_dssp             CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEET
T ss_pred             CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEec
Confidence            45699999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	3e-18
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	8e-18
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	8e-18
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-17
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	2e-15
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	8e-15
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-14
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-13
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	3e-12
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	1e-11
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	9e-11
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	6e-10
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	3e-08
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	8e-08
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	6e-05
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	6e-04

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 76.3 bits (188), Expect = 3e-18
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
           VD+ +    E +A+  +  W  K GD +   + L  +++DK  +E+ +   G +  +L  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62

Query: 150 PGNIVKVGETLLKLVVGD 167
            G  V   + L +L  G+
Sbjct: 63  EGTTVTSRQILGRLREGN 80

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 75.2 bits (185), Expect = 8e-18
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
           +D+      E IA+  +  W  K G+ ++  + +  +++DK  +E+ +   G +A+++  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 150 PGNIVKVGETLLKLVVG 166
            G+ V  GE L KL  G
Sbjct: 62  EGDTVLSGELLGKLTEG 78

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (186), Expect = 8e-18
 Identities = 32/82 (39%), Positives = 49/82 (59%)

Query: 87  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 146
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 147 LHAPGNIVKVGETLLKLVVGDS 168
            +   +I  VG+ L+ +     
Sbjct: 62  YYNLDDIAYVGKPLVDIETEAL 83

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 37/74 (50%), Positives = 48/74 (64%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
            +  L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L  
Sbjct: 2   FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 61

Query: 150 PGNIVKVGETLLKL 163
            G +  VG+TL+ L
Sbjct: 62  EGTVATVGQTLITL 75

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 90  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
           + V L      +    + +W  K G+++ E   L  +++DKATI    + +G +A++L  
Sbjct: 6   MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 65

Query: 150 PGN-IVKVGETLLKLVVGDSAVPTPSS 175
            G   V +G  L  +V  ++ +   + 
Sbjct: 66  EGTRDVPLGTPLCIIVEKEADISAFAD 92

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 66.7 bits (163), Expect = 8e-15
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V++ +   G      +++   V  GD I     L  +++DKAT+++ +   G V ++  
Sbjct: 2   LVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV 60

Query: 149 APGNIVKVGETLLKLVVGDSA 169
             G+ +  G  ++ +    +A
Sbjct: 61  KVGDKISEGGLIVVVEAEGTA 81

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 87  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 146
           S I+ VP    G    + E+++  VK GD IE  Q L  ++S KA++E+ S   G V  +
Sbjct: 1   SEIIRVP--DIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSV 55

Query: 147 LHAPGNIVKVGETLLKLVVGDSA 169
               G+ +K G+ +++L     A
Sbjct: 56  SVKLGDKLKEGDAIIELEPAAGA 78

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           + +V +   G    E E+ +  VK GD++   Q L  V+ DKA++E+ + + G V +L  
Sbjct: 2   VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59

Query: 149 APGNIVKVGETLLKLVVGDSA 169
             G+ VK G  ++   V  +A
Sbjct: 60  NVGDKVKTGSLIMIFEVEGAA 80

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 282 DKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKL-KASFQNNNSDPNIKHTFL 339
           +K VP+   ++ + + +  A           E+N   ++ L K   +       I+  F+
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63

Query: 340 PSLIKSLSMAMSKYPFMNSCFNEESL 365
              +K++  A+ +YP +N+  + + +
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGDDV 89

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 56.4 bits (137), Expect = 1e-11
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
           V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +
Sbjct: 2   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAF 39

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 80  ALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRY 139
           A A     G +  PLA T        + K  VKEGD ++  Q +  +++ K   EI +  
Sbjct: 1   AGAGKAGEGEIPAPLAGT--------VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPT 52

Query: 140 KGKVAQLLHAPGNIVKVGETLLKL 163
            GKV ++L    + V+ G+ L+K+
Sbjct: 53  DGKVEKVLVKERDAVQGGQGLIKI 76

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 51.8 bits (125), Expect = 6e-10
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242
           +P +R L   + ++   +  TG  GR+ +EDV K+  +
Sbjct: 2   SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 39

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 51.8 bits (123), Expect = 3e-08
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 279 YPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHT 337
           Y + + VP+    +     +  +   +PH    E  +   L   + + +       +K T
Sbjct: 12  YGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLT 71

Query: 338 FLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            LP L+K+ +  + + P  NS        +I K
Sbjct: 72  VLPLLLKACAYLLKELPDFNSSLAPSGQALIRK 104

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.2 bits (119), Expect = 8e-08
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 282 DKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 340
           +    + G +R + K M  +    PH   ++E +   LV  +  F+   ++  IK TFLP
Sbjct: 14  ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLP 73

Query: 341 SLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
            ++K+L  A+ +YP +N+  ++E+ E+I K
Sbjct: 74  YVVKALVSALREYPVLNTSIDDETEEIIQK 103

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 305 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 364
             F    +I+   L K            +  + F P +I  ++ A++++  +     ++ 
Sbjct: 26  CGFSLTSKIDITTLKKSL---------DDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDE 76

Query: 365 L 365
           L
Sbjct: 77  L 77

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 305 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 364
             ++   +++  A +K              KH F P+ I  L+  M+ +P       +  
Sbjct: 27  CTYNQTVQLDITAFLKTV---------KKNKHKFYPAFIHILARLMNAHPEFRMAMKDGE 77

Query: 365 LEV 367
           L +
Sbjct: 78  LVI 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.88
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.88
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.87
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.85
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	99.85
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.84
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	99.84
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	99.84
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.8
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.61
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.52
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.48
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.44
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	98.92
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	98.9
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	97.16
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.15
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.08
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.33
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	96.05
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.0
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.84
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	95.76
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.27
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	94.45
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	94.44
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	93.62
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.24
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	91.97
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	89.76
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	89.02
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	86.72
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	86.23
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	84.9
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	84.28
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	82.27
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	82.26
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	82.2
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	81.63
d1o4ua2	103	Quinolinic acid phosphoribosyltransferase (Nicotin	81.17

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=164.74  Aligned_cols=80  Identities=25%  Similarity=0.371  Sum_probs=75.9

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD  167 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~  167 (372)
                      .++|.||+||++|++|+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+ .|++|++|++|...+
T Consensus         5 ~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~~   84 (102)
T d1y8ob1           5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE   84 (102)
T ss_dssp             EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred             CEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEecCC
Confidence            4889999999999999999999999999999999999999999999999999999999999997 699999999997654


Q ss_pred             C
Q 017418          168 S  168 (372)
Q Consensus       168 ~  168 (372)
                      +
T Consensus        85 ~   85 (102)
T d1y8ob1          85 A   85 (102)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-22  Score=160.46  Aligned_cols=83  Identities=39%  Similarity=0.709  Sum_probs=79.2

Q ss_pred             CCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418           86 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus        86 ~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      |.++++|+||+||++|++|+|++|++++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|++|++|+.|+.
T Consensus         1 M~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~   80 (87)
T d1k8ma_           1 MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (87)
T ss_dssp             CCCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             CCccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCC
Q 017418          166 GDS  168 (372)
Q Consensus       166 ~~~  168 (372)
                      ++.
T Consensus        81 ~~~   83 (87)
T d1k8ma_          81 EAL   83 (87)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.87  E-value=7.9e-23  Score=158.45  Aligned_cols=77  Identities=26%  Similarity=0.482  Sum_probs=75.1

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.+
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999864

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=6.8e-23  Score=159.14  Aligned_cols=78  Identities=47%  Similarity=0.773  Sum_probs=74.7

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.++
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~G   79 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   79 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCSC
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999997643

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=2.6e-22  Score=186.45  Aligned_cols=90  Identities=29%  Similarity=0.552  Sum_probs=82.9

Q ss_pred             CCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418          281 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  359 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~  359 (372)
                      .++++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+..+++|+|+||++||+||++.||++||.+|++
T Consensus        13 ~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~   92 (242)
T d1b5sa_          13 PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTS   92 (242)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCC
T ss_pred             CceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheE
Confidence            3567899999999999999995 899999999999999999999999776678999999999999999999999999999


Q ss_pred             EeCCCCEEEEc
Q 017418          360 FNEESLEVILK  370 (372)
Q Consensus       360 ~~~~~~eIv~~  370 (372)
                      |+++++.|.++
T Consensus        93 ~~~~~~~i~~~  103 (242)
T d1b5sa_          93 IDDETEEIIQK  103 (242)
T ss_dssp             BCTTSSCBCCC
T ss_pred             EcCCCCEEEEe
Confidence            99887777665

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.9e-23  Score=159.47  Aligned_cols=77  Identities=25%  Similarity=0.443  Sum_probs=74.6

Q ss_pred             EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  166 (372)
Q Consensus        90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~  166 (372)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.+
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~eg   79 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREG   79 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999753

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-21  Score=180.85  Aligned_cols=89  Identities=17%  Similarity=0.408  Sum_probs=81.2

Q ss_pred             CCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccC-CCCCCccchhHHHHHHHHHHHhhcCccce
Q 017418          281 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNN-SDPNIKHTFLPSLIKSLSMAMSKYPFMNS  358 (372)
Q Consensus       281 ~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~-~~~gvklS~~~fiiKAva~ALk~~P~lNa  358 (372)
                      +++++||++|||+||++|++|+ ++||||++.|||+++|+++|+++++.+ ++.|+|+||++||+||++.||++||.+|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            4678999999999999999995 899999999999999999999998765 35689999999999999999999999999


Q ss_pred             EEeCCCCEEEEcC
Q 017418          359 CFNEESLEVILKG  371 (372)
Q Consensus       359 ~~~~~~~eIv~~~  371 (372)
                      +|+++  +|++++
T Consensus        83 ~~~~~--~i~~~~   93 (233)
T d1scza_          83 SIDGD--DVVYHN   93 (233)
T ss_dssp             EEETT--EEECCS
T ss_pred             EEcCC--eEEEec
Confidence            99865  687764

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.84  E-value=1.6e-21  Score=181.07  Aligned_cols=92  Identities=18%  Similarity=0.300  Sum_probs=84.6

Q ss_pred             CCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccce
Q 017418          280 PDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNS  358 (372)
Q Consensus       280 ~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa  358 (372)
                      ++.+++||++|||+||++|++| +++||||++.|+|+|+|+++|+++++..+++|+|+||++||+|||+.||++||.+|+
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns   92 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhh
Confidence            3557899999999999999999 489999999999999999999999876667899999999999999999999999999


Q ss_pred             EEeCCCCEEEEcC
Q 017418          359 CFNEESLEVILKG  371 (372)
Q Consensus       359 ~~~~~~~eIv~~~  371 (372)
                      +|++++.+|++++
T Consensus        93 ~~~~~~~~~~~~~  105 (243)
T d1dpba_          93 SLAPSGQALIRKK  105 (243)
T ss_dssp             EECTTSSCEEECS
T ss_pred             ccccccccceeec
Confidence            9998888887763

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.81  E-value=3.9e-21  Score=149.51  Aligned_cols=79  Identities=20%  Similarity=0.376  Sum_probs=75.1

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      +++|+||+|| ++.+++|++|++++||.|++||+||+|||||++++++||.+|+|.++++++|+.|++|++|+.|+.+++
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g~   80 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT   80 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSCC
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecccC
Confidence            5789999999 589999999999999999999999999999999999999999999999999999999999999986553

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.9e-20  Score=142.43  Aligned_cols=78  Identities=29%  Similarity=0.475  Sum_probs=73.5

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      +++|+||++|++  +++|++|++++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus         2 ~~ei~~P~lG~~--~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg~   79 (80)
T d1qjoa_           2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA   79 (80)
T ss_dssp             EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCCC
T ss_pred             CeEEECCCCCCC--eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCcC
Confidence            468999999875  899999999999999999999999999999999999999999999999999999999999986553

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=2.7e-19  Score=138.30  Aligned_cols=75  Identities=28%  Similarity=0.406  Sum_probs=71.2

Q ss_pred             EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418           91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  168 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~  168 (372)
                      -|+||++|.   +|+|++|+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+.|.+|++|+.|+..+.
T Consensus         3 ~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~   77 (79)
T d1iyua_           3 IIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG   77 (79)
T ss_dssp             EEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCS
T ss_pred             EEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCcc
Confidence            489999984   899999999999999999999999999999999999999999999999999999999999987553

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.61  E-value=1.3e-15  Score=116.78  Aligned_cols=68  Identities=28%  Similarity=0.404  Sum_probs=63.5

Q ss_pred             EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418           91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus        91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .|.-|-      .|+|++|+|++||.|++||+||.+|+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus        10 ~v~ap~------~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~ig   77 (77)
T d1dcza_          10 EIPAPL------AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             EEEBSS------SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             EEECCC------CcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEeC
Confidence            466664      49999999999999999999999999999999999999999999999999999999999873

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.52  E-value=2.2e-15  Score=101.59  Aligned_cols=39  Identities=46%  Similarity=0.745  Sum_probs=37.8

Q ss_pred             ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418          202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  240 (372)
Q Consensus       202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~  240 (372)
                      +++||+||+||+|+||||++|+|||++|||+++||++|+
T Consensus         2 v~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i   40 (42)
T d1w85i_           2 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL   40 (42)
T ss_dssp             CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHH
T ss_pred             cccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHh
Confidence            679999999999999999999999999999999999997

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=5e-15  Score=98.41  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHH
Q 017418          204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV  241 (372)
Q Consensus       204 asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~  241 (372)
                      .||+||+||+|+|||++.|+|||++|||+++||++|+.
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            48999999999999999999999999999999999973

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=9.6e-14  Score=106.87  Aligned_cols=58  Identities=26%  Similarity=0.396  Sum_probs=55.9

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418          107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV  164 (372)
Q Consensus       107 ~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~  164 (372)
                      .+++|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            3789999999999999999999999999999999999999999999999999999885

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.2e-09  Score=98.31  Aligned_cols=77  Identities=17%  Similarity=0.322  Sum_probs=61.2

Q ss_pred             cccccChh-HHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEe
Q 017418          283 KTVPLRGF-QRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN  361 (372)
Q Consensus       283 ~~ipls~~-Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~  361 (372)
                      +.|.++.- ||..-.-- .+...|||+++.+||+|+|+++||+-         ++||+++|+||++.||++||.||++|+
T Consensus         5 k~ID~~~W~R~~~f~~f-~~~~~P~f~it~~vDvT~l~~~~K~~---------~~sf~~~~~~av~~Al~~~P~~n~~~~   74 (214)
T d1q23a_           5 TTVDISQWHRKEHFEAF-QSVAQCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMK   74 (214)
T ss_dssp             EECCGGGCTTHHHHHHH-TTTTCEEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHTTCGGGSEEEE
T ss_pred             eEeccccCcCHHHHHHH-hCCCCCeEEEEEEEcHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHhChHhheEEc
Confidence            44555553 54444432 23568999999999999999998762         689999999999999999999999998


Q ss_pred             CCCCEEEEcC
Q 017418          362 EESLEVILKG  371 (372)
Q Consensus       362 ~~~~eIv~~~  371 (372)
                      ++  +|++++
T Consensus        75 ~~--~i~~~~   82 (214)
T d1q23a_          75 DG--ELVIWD   82 (214)
T ss_dssp             TT--EEEEES
T ss_pred             CC--ceeEcC
Confidence            65  788775

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=9.5e-10  Score=98.76  Aligned_cols=69  Identities=16%  Similarity=0.230  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEc
Q 017418          291 QRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK  370 (372)
Q Consensus       291 Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~  370 (372)
                      ||...+... ..+.|||+++.+||+|+|++.|++         -++||+++++||++.||++||.+|++|+++  +|+++
T Consensus        13 Rk~~f~~f~-~~~~P~~~~t~~vDvT~l~~~~K~---------~~~sf~~~~~~a~~~Al~~~P~~n~~~~~~--~i~~~   80 (213)
T d3claa_          13 RREHFEFYR-HRLPCGFSLTSKIDITTLKKSLDD---------SAYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVW   80 (213)
T ss_dssp             THHHHHHHH-HTSCCEEEEEEEEECHHHHHHHHT---------SSCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEE
T ss_pred             cHHHHHHHh-CCCCCEEEEEEEEeHHHHHHHHHH---------cCCCeeHHHHHHHHHHHHhChHhhhEeccC--eEEEe
Confidence            666655542 357899999999999999998864         268999999999999999999999999864  78876


Q ss_pred             C
Q 017418          371 G  371 (372)
Q Consensus       371 ~  371 (372)
                      +
T Consensus        81 ~   81 (213)
T d3claa_          81 D   81 (213)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.16  E-value=7.1e-05  Score=65.54  Aligned_cols=59  Identities=20%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------------------------------------  131 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------------------------------------------------  131 (372)
                      .|.|.+|+|++||.|++||+|++|++...                                                   
T Consensus        23 ~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~~  102 (237)
T d1vf7a_          23 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  102 (237)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHHH
Confidence            79999999999999999999999976432                                                   


Q ss_pred             ------eeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418          132 ------TIEITSRYKGKVAQLLHAPGNIVKVGETLL  161 (372)
Q Consensus       132 ------~~ei~ap~~G~v~~i~~~eg~~v~vG~~la  161 (372)
                            ...+.||++|+|.++.+.+|+.+..|....
T Consensus       103 a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~  138 (237)
T d1vf7a_         103 ARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANA  138 (237)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSC
T ss_pred             HhhhhcccccccchhceeeeEEeccCcEEcCCccee
Confidence                  345999999999999999999988876544

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00031  Score=57.19  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~-v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+.+. .++|+.|++|+.++.||+.|...+|.||.+|+|.++.
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN   79 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN   79 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEh
Confidence            4555553 4899999999999999999999999999999998886

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.08  E-value=0.00038  Score=56.93  Aligned_cols=44  Identities=25%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418          104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL  147 (372)
Q Consensus       104 G~I~~w~-v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~  147 (372)
                      |.|+.+. .++|+.|++||.++.||+.|+..++.||.+|+|..+.
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            4454443 4799999999999999999999999999999998885

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.33  E-value=0.0019  Score=47.66  Aligned_cols=35  Identities=34%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418          133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~  167 (372)
                      -.|+||..|+|.++++++||.|..|++|+.++...
T Consensus         9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K   43 (77)
T d1dcza_           9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccC
Confidence            47999999999999999999999999999998643

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.004  Score=46.33  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      ..+|.-|.      .|+|.+|++++||.|+.||+|++||
T Consensus        48 ~~~i~a~~------~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          48 MNQIEADK------SGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEEECSS------CEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             cEEEEcCC------CeEEEEEEeCCCCEECCCCEEEEEC
Confidence            34455554      8999999999999999999999986

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.00  E-value=0.0036  Score=46.32  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=30.2

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      ..+|.-|.      .|+|.+|++++||.|..||+|++||...
T Consensus        41 ~~~i~a~~------~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          41 SMEVPSPK------AGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEEECSS------SSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             EEEEEecc------ccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            44555554      8999999999999999999999998654

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0042  Score=46.06  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=26.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      +|+|.++++++||.|+.|++||.||++-
T Consensus        51 ~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_          51 AGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            8999999999999999999999999753

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0059  Score=46.08  Aligned_cols=30  Identities=13%  Similarity=0.152  Sum_probs=27.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA  131 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~  131 (372)
                      .+|+|.++++++||.|+.|++|+.|+++..
T Consensus        54 ~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~   83 (87)
T d1k8ma_          54 YDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (87)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            389999999999999999999999998754

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.27  E-value=0.012  Score=43.33  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=24.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      +|+|.++++++||.|..|++|+.|+.
T Consensus        52 ~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          52 DGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             CEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            89999999999999999999999974

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.45  E-value=0.0036  Score=46.51  Aligned_cols=28  Identities=21%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      .+|+|.++++++||.|+.|++|+.||++
T Consensus        51 ~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_          51 VKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             SCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            3899999999999999999999999875

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.44  E-value=0.012  Score=50.59  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=34.5

Q ss_pred             EEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418          125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       125 ~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~  165 (372)
                      .|+..+ ..+|.|+.+|+|.+++|++|+.|+.|++|+.|+.
T Consensus         9 ~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~   48 (237)
T d1vf7a_           9 RTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   48 (237)
T ss_dssp             ECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEeh
Confidence            455433 4679999999999999999999999999999964

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.62  E-value=0.0063  Score=45.15  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      ..|+|.+|++++||.|+.|++||++|++
T Consensus        51 ~~G~i~~i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_          51 VAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            3799999999999999999999999865

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.085  Score=40.53  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=24.3

Q ss_pred             eEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418          103 ECELLKWFVKEGD-EIEEFQPLCAVQSD  129 (372)
Q Consensus       103 eG~I~~w~v~eGd-~V~~Gd~l~~vetd  129 (372)
                      +|.|.++++++|| .|..|++||.|..+
T Consensus        56 ~G~l~~i~v~eGd~~v~vG~~ia~i~~~   83 (102)
T d1y8ob1          56 EGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (102)
T ss_dssp             CEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred             cEEEEEEEEccCCEEEcCCCEEEEEecC
Confidence            8999999999998 59999999999544

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.0097  Score=44.09  Aligned_cols=26  Identities=23%  Similarity=0.167  Sum_probs=24.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418          102 AECELLKWFVKEGDEIEEFQPLCAVQ  127 (372)
Q Consensus       102 ~eG~I~~w~v~eGd~V~~Gd~l~~ve  127 (372)
                      .+|+|.++++++||.|+.|++|+.|+
T Consensus        52 ~~G~l~~i~v~~Gd~v~~G~~l~~i~   77 (80)
T d1pmra_          52 ADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             SBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            38999999999999999999999987

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=89.76  E-value=0.091  Score=43.39  Aligned_cols=58  Identities=21%  Similarity=0.174  Sum_probs=38.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------eeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKL  163 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~---------~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i  163 (372)
                      +|+--+++|++||+|++||+|+++.-+..         -+-+.-....   .+.......|..|++|+.+
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd~i~~i  153 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTCEEEEE
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCCEEEEe
Confidence            56667999999999999999999975332         1222222221   1223344578999999876

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=89.02  E-value=0.5  Score=38.69  Aligned_cols=67  Identities=12%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             eEEEEccCCCCCcceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEecCCCeEEEEE------------------
Q 017418           89 IVDVPLAQTGEGIAECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL------------------  146 (372)
Q Consensus        89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V----~~Gd~l~~vetdK~~~ei~ap~~G~v~~i------------------  146 (372)
                      .++|.-|-      +|+++.+ -+.-|.|    --|+-++..=++   -.|.||++|+|..+                  
T Consensus         7 ~~~i~aP~------~G~vi~l-~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~eiL   76 (154)
T d2gpra_           7 NLKVLAPC------DGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL   76 (154)
T ss_dssp             CEEEECSS------SEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred             ceEEEecC------CceEEEc-ccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCCEEE
Confidence            35666665      7888874 5566655    457888877655   36889999988876                  


Q ss_pred             -----------------ccCCCCeEecccEEEEEec
Q 017418          147 -----------------LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 -----------------~~~eg~~v~vG~~la~i~~  165 (372)
                                       ++++||.|..|++|+.++-
T Consensus        77 IHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EEEcccccccCCceeEEEecCCCEEcCCCEEEEEcH
Confidence                             6779999999999999873

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=86.72  E-value=0.54  Score=38.31  Aligned_cols=59  Identities=15%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418          103 ECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL--------------------------------  146 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i--------------------------------  146 (372)
                      +|+++.+ -+.-|.|=.    |+-++.+=++.   .|.||++|+|..+                                
T Consensus         9 ~G~vi~L-~~v~D~vFs~~~mG~GvAI~P~~~---~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLIHiGidTV~L~G~g   84 (150)
T d2f3ga_           9 SGEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN---KMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEG   84 (150)
T ss_dssp             SEEEECG-GGSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTT
T ss_pred             CceEEEc-ccCCChHHhcCCccCeEEEEeCCC---eEEeecCEEEEEECCCCCEEEEEeCCceEEEEEEccchhhcCCcc
Confidence            5666663 344444432    67777665543   5778888877766                                


Q ss_pred             ---ccCCCCeEecccEEEEEec
Q 017418          147 ---LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ---~~~eg~~v~vG~~la~i~~  165 (372)
                         ++++||.|..|++|+.++.
T Consensus        85 F~~~v~~Gd~V~~G~~L~~~D~  106 (150)
T d2f3ga_          85 FKRIAEEGQRVKVGDTVIEFDL  106 (150)
T ss_dssp             EEECSCTTCEECTTCEEEEECH
T ss_pred             eEEEecCCCEECCCCEEEEEcH
Confidence               6778999999999999864

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=86.23  E-value=0.58  Score=38.47  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             eEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418          103 ECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL--------------------------------  146 (372)
Q Consensus       103 eG~I~~w~v~eGd~V----~~Gd~l~~vetdK~~~ei~ap~~G~v~~i--------------------------------  146 (372)
                      .|+++. +-+..|.|    --|+-++..=++   -.|.||++|+|..+                                
T Consensus        17 ~G~vi~-L~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~g   92 (158)
T d1gpra_          17 TGEIHP-ITDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   92 (158)
T ss_dssp             SEEEEE-GGGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTTT
T ss_pred             CcEEEE-hhhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCcc
Confidence            677777 44666665    347888866555   36888888888776                                


Q ss_pred             ---ccCCCCeEecccEEEEEec
Q 017418          147 ---LHAPGNIVKVGETLLKLVV  165 (372)
Q Consensus       147 ---~~~eg~~v~vG~~la~i~~  165 (372)
                         ++++||.|+.|++|+.++.
T Consensus        93 F~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          93 FTSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             EEECCCTTCEECTTCEEEEECH
T ss_pred             eEEEEcCCCEEcCCCEEEEeCH
Confidence               6779999999999999874

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.90  E-value=0.34  Score=37.61  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=22.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe
Q 017418          104 CELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       104 G~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      +.-+.|++++||.|++||.|++|+-
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G   94 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEA   94 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEec
Confidence            4557899999999999999999974

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=84.28  E-value=0.19  Score=41.48  Aligned_cols=27  Identities=41%  Similarity=0.439  Sum_probs=23.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      +|+--+++|++||.|++||+|+++.-+
T Consensus        89 ~G~gF~~~v~~Gd~Vk~G~~L~~~D~~  115 (158)
T d1gpra_          89 KGEGFTSFVSEGDRVEPGQKLLEVDLD  115 (158)
T ss_dssp             TTTTEEECCCTTCEECTTCEEEEECHH
T ss_pred             CCcceEEEEcCCCEEcCCCEEEEeCHH
Confidence            455578999999999999999999754

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.27  E-value=1.2  Score=33.63  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             ceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecCC
Q 017418          130 KATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD  167 (372)
Q Consensus       130 K~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~~  167 (372)
                      +-..+|.|+.+|+|..+                               +.+.||.|..|++|++|-..+
T Consensus         3 ~~~~~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3           3 AYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             SEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             CeEEEEECCCCEEEEEEeHHHHHHHHHHhCCCcccccCccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            34578888999988887                               567899999999999998543

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.26  E-value=0.42  Score=37.43  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEe
Q 017418          105 ELLKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       105 ~I~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      .-++|++++||.|++|++|++|+-
T Consensus        78 i~~~~~~~DG~~v~~G~~i~~i~G  101 (122)
T d1qapa2          78 VRLTWHVDDGDAIHANQTVFELQG  101 (122)
T ss_dssp             SEEEESCCTTCEECTTCEEEEEEE
T ss_pred             eEEEecccCccEEecCceEEEEEE
Confidence            446899999999999999999974

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.42  Score=36.61  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSD  129 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetd  129 (372)
                      -+.=+.++++.||.|++||+||.|=++
T Consensus        42 ~~vGi~l~~k~Gd~V~~G~~l~~ih~~   68 (105)
T d1uoua3          42 LGVGAELLVDVGQRLRRGTPWLRVHRD   68 (105)
T ss_dssp             SSCEEEECSCTTCEECTTCEEEEEEES
T ss_pred             ccccEEEeecCCCEEcCCCeEEEEECC
Confidence            344468899999999999999998554

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.63  E-value=0.55  Score=35.72  Aligned_cols=28  Identities=18%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418          103 ECELLKWFVKEGDEIEEFQPLCAVQSDK  130 (372)
Q Consensus       103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK  130 (372)
                      -+.=+.++++.||.|++||+|+.|=+++
T Consensus        44 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          44 LAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             TTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             cccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            3444688999999999999999987654

>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.17  E-value=0.39  Score=36.30  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEcCCCCeecCCCeEEEEEe
Q 017418          107 LKWFVKEGDEIEEFQPLCAVQS  128 (372)
Q Consensus       107 ~~w~v~eGd~V~~Gd~l~~vet  128 (372)
                      ++|++++||.|++|++|++++-
T Consensus        61 v~~~~~dG~~v~~g~~I~~i~G   82 (103)
T d1o4ua2          61 SKFNVEDGEYLEGTGVIGEIEG   82 (103)
T ss_dssp             EEESCCTTCEEESCEEEEEEEE
T ss_pred             eeeecCCCCEEEcCceEEEEec
Confidence            6899999999999999999974