Citrus Sinensis ID: 017424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccEEEEEEcccccccccHHHHHHHHHccEEEEcccccEEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEEEccccccccEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEcccccccHHHHHHHHHHccEEEEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccEEEEEEcccccccHHHHHHHHHHHccEEEEcEEEEEEEEccccccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEccccccHHHHcccccccHHHHHHHHccccccccccccccccccEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEEEccccEcccHHHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEccEEEcccccccEHHHHHHHHHHcccEEEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGILYDDVVIISqsdkegdpcvitvncpdktglgcdlCRIILFFGLSIVRGASVVLYYRaemqapkpsdvfLLKLscydrkgllYDVTAVLCELELTIEKVKisttpdgkvmdLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITacsqassflpSAIIDMLhldmpvelpsgsltcsnvsvtidnslspghtLVQIVCQDHKGLLYDIMRTLKDYNIqvsygrfsrrqrgnceidlfimqadgkkivdpskqnglssRLWMELLQPLRVTvvsrgpdtellvanpvelsgkgrplvFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDegdglsvprnkIEEGVWKLLMGWE
Flexible Loop (DISEMBL)
MGILYDDVVIisqsdkegdpcVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEmqapkpsdvfLLKLSCYDRKGLLYDVTAVLCELELTIEkvkisttpdgkvmdlFFVTDTrellhtrkrkedtyeHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSygrfsrrqrgnCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVAnpvelsgkgrpLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLdegdglsvprnkieegVWKLLMGWE
Low Complexity Region (SEG)
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered region (IsUnstruct)
**ILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD****NGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW*
Disordered Region (DISOPRED)
***LYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCD*****************************************SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV***********LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG******KIEEGVWKLLMGW*
Disordered Region (DISEMBL)
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered Region (DISPRO)
*GILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLD***********CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.513	0.203	0.245	2e-05
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.513	0.203	0.245	2e-05
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.448	0.175	0.224	4e-05
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.225	0.090	0.333	9e-05
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.408	0.162	0.247	9e-05
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.126	0.049	0.458	0.0008

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 41/232 (17%)

Query: 42  LFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV 101
           LF    + R A++     AE Q    S+   + ++  DR+GL  D+   +  L   +   
Sbjct: 707 LFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGA 766

Query: 102 KISTTPDGKVMDLFFVTDTR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVG 154
           ++ T+  G+ +D+F+V D        E     +R  D  E      G+A+    VE   G
Sbjct: 767 RVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRG 821

Query: 155 TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD 214
           +E T  + A +  PS                         VTIDN  S   T+V+   +D
Sbjct: 822 SEQTRAA-AFAIAPS-------------------------VTIDNDASNDATVVEASGRD 855

Query: 215 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 265
             GLL+ + +TL D  + +          G   +D F +Q  +G K+ D  K
Sbjct: 856 RPGLLHALAKTLADSALSIQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 41/232 (17%)

Query: 42  LFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV 101
           LF    + R A++     AE Q    S+   + ++  DR+GL  D+   +  L   +   
Sbjct: 707 LFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGA 766

Query: 102 KISTTPDGKVMDLFFVTDTR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVG 154
           ++ T+  G+ +D+F+V D        E     +R  D  E      G+A+    VE   G
Sbjct: 767 RVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRG 821

Query: 155 TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD 214
           +E T  + A +  PS                         VTIDN  S   T+V+   +D
Sbjct: 822 SEQTRAA-AFAIAPS-------------------------VTIDNDASNDATVVEASGRD 855

Query: 215 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 265
             GLL+ + +TL D  + +          G   +D F +Q  +G K+ D  K
Sbjct: 856 RPGLLHALAKTLADSALSIQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 29/196 (14%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 132
           L + C D  GL   +   L     +I   +I T  DG  +D F+V D          +  
Sbjct: 758 LTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLG 817

Query: 133 TYEHL--KTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTC 190
              HL  + + G   I   +E      T+    +  +P  ++                  
Sbjct: 818 RLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVV------------------ 859

Query: 191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL 250
                 IDN+ S  HT++++  +D  GLL+D+   L   ++Q+S    +    G   +D+
Sbjct: 860 ------IDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDV 911

Query: 251 F-IMQADGKKIVDPSK 265
           F +    G KI DP +
Sbjct: 912 FYVRDLLGMKITDPVR 927

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 254
           V IDN+ S  HT++++  +D  GLLYD+ R L +  +Q+S  + S    G   ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904

Query: 255 -ADGKKIVDPSKQNGLSSRLWMELLQP 280
              G K+   +K   +  RL   L  P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 46/198 (23%)

Query: 79  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 138
           D  GL   +   +    + I   KI+T  DG  +D+F V                    +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTV--------------------Q 774

Query: 139 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE---------LPSGSLT 189
           T+ G+A+                +  + L   + D+L  D+P+E         LP  +  
Sbjct: 775 TLEGHAI-------------EKEERIARLAKTVRDVLTGDLPLEKALRRQPPRLPERTRH 821

Query: 190 CS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 248
            +    V +DN  S  HT+++I  +D  G LY + R L D  +Q+S  R S    G   +
Sbjct: 822 LTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVV 879

Query: 249 DLFIMQ-ADGKKIVDPSK 265
           D F ++   G KIV  +K
Sbjct: 880 DSFYVKDVFGMKIVHRAK 897

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 72  LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
           ++++ C DR GLL ++TAVL +L L I+  +I+T  + KV+D F+VTD
Sbjct: 839 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVTD 885

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
356533259	411	PREDICTED: uncharacterized protein LOC10	1.0	0.905	0.695	1e-164
356572480	412	PREDICTED: uncharacterized protein LOC10	1.0	0.902	0.703	1e-164
224117840	412	predicted protein [Populus trichocarpa]	0.997	0.900	0.718	1e-163
356548347	412	PREDICTED: uncharacterized protein LOC10	1.0	0.902	0.691	1e-161
225441177	411	PREDICTED: uncharacterized protein LOC10	0.994	0.900	0.704	1e-161
147817636	465	hypothetical protein VITISV_004035 [Viti	0.994	0.795	0.684	1e-158
224105273	411	predicted protein [Populus trichocarpa]	0.994	0.900	0.703	1e-158
224056635	413	predicted protein [Populus trichocarpa]	0.997	0.898	0.704	1e-158
255556900	409	amino acid binding protein, putative [Ri	0.989	0.899	0.711	1e-158
449440141	411	PREDICTED: uncharacterized protein LOC10	0.997	0.902	0.658	1e-151

>gi|356533259|ref|XP_003535183.1| PREDICTED: uncharacterized protein LOC100789465 [Glycine max]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 286/411 (69%), Positives = 333/411 (81%), Gaps = 39/411 (9%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGILYDDVVII   +K+GDP ++TVNCPDKTGLGCDLCRI+LFFGL+I+RG         
Sbjct: 1   MGILYDDVVIIRPPEKDGDPTLLTVNCPDKTGLGCDLCRIMLFFGLNIIRGDVSTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS + YYR+++Q  KPSDVFLL  SC+DRK
Sbjct: 61  YIVFWVVGKQRTRWSLLKKRLIEACPSCSSASGISYYRSDLQPSKPSDVFLLNFSCHDRK 120

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELELTI+KVK+STTPDGKVMDLFF+TDTRELLHT+KRK++T EHL  I+
Sbjct: 121 GLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDTRELLHTKKRKDETIEHLTEIM 180

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSL 201
           G+A+IS D+E+VG EITACS+A  FLP+AI D+  L++P     G+L    VS+T+DN L
Sbjct: 181 GDAIISIDIELVGPEITACSKAPPFLPTAITDIFDLELPDLARGGTLRSDYVSITMDNLL 240

Query: 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIV 261
           SP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRF+ + RG CEIDLFIMQADGKKIV
Sbjct: 241 SPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTTKPRGKCEIDLFIMQADGKKIV 300

Query: 262 DPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKML 321
           DP+KQN LSSRL MELL+PLRV +VSRGPDTELLV+NPVELSGKGRPLVF+DITLALKML
Sbjct: 301 DPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGKGRPLVFYDITLALKML 360

Query: 322 DICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           D CIFSA+IGRH+IGDREWEVYR+LLDEG+GLSVPRNK+EEGVWK+LMGWE
Sbjct: 361 DTCIFSAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVWKMLMGWE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572480|ref|XP_003554396.1| PREDICTED: uncharacterized protein LOC100818216 [Glycine max]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/412 (70%), Positives = 331/412 (80%), Gaps = 40/412 (9%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGIL+DDVVII +++KEG   VITVNCPDKTGLGCDLCRIILFFGLSIVRG         
Sbjct: 1   MGILHDDVVIIGEAEKEGKATVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS + YYR+E+Q PKP DVFLLK  C+DRK
Sbjct: 61  YIVFWVVGKQRARWSLLKKRLIEACPSCSSASGISYYRSELQPPKPPDVFLLKFCCHDRK 120

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VL ELEL I KVK+STTPDGKV+DLFF+TDTRELLHT+KR++DT E L  IL
Sbjct: 121 GLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLSAIL 180

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 200
           G+ +I+ D+E+VG EI ACSQASSFLPSA+  DM  L++P  + SG+ T  +VS+T+DNS
Sbjct: 181 GDPLITIDIELVGPEIAACSQASSFLPSAMTEDMFDLELPGSIQSGTSTSDSVSITMDNS 240

Query: 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 260
           LSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRFS + RG CE+DLFIMQADGKKI
Sbjct: 241 LSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPRGKCELDLFIMQADGKKI 300

Query: 261 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 320
           V+PSKQ  LSSRL MELL+PLRVTVVSRGPDTELLVANPVELSGKGRPLVF+DIT ALKM
Sbjct: 301 VNPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELSGKGRPLVFYDITHALKM 360

Query: 321 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           L  CIFSAE+GRH++GDREWEVYR+LLDEGDGLSVPRNKIE+GVWK+LMGWE
Sbjct: 361 LGPCIFSAEVGRHVVGDREWEVYRILLDEGDGLSVPRNKIEKGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117840|ref|XP_002317681.1| predicted protein [Populus trichocarpa] gi|222860746|gb|EEE98293.1| predicted protein [Populus trichocarpa]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/412 (71%), Positives = 329/412 (79%), Gaps = 41/412 (9%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGILYDDVVII  S+KEGDP VITVNCPDKTGLGCDLCRIILFFGLSIVRG         
Sbjct: 1   MGILYDDVVIIRHSEKEGDPAVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS + YY AE+Q P+P DVFLLKL+C+DRK
Sbjct: 61  YIVFSVVGKSTTRWGLLKKRLVGACPSCSSASGISYYTAELQPPRPPDVFLLKLACHDRK 120

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFFVTDTRELLHT KRKEDTY+HL+ ++
Sbjct: 121 GLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTRELLHTNKRKEDTYDHLRAVM 180

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 200
           GN+MISCD+EMVG EITACS  SSFLP+AI  ++L L MP ELPS   + S   + +DN 
Sbjct: 181 GNSMISCDIEMVGPEITACSAESSFLPTAITENILPLQMPDELPSSLTSTSVSVI-MDNL 239

Query: 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 260
           LSP HTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRF  + R  CEIDLFIMQADGKKI
Sbjct: 240 LSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHRRTCEIDLFIMQADGKKI 299

Query: 261 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 320
           VDP+KQ  LSSRL MEL++PLRV VVSRGPDTEL+VANPVELSGKGRPLVFHDITLAL M
Sbjct: 300 VDPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELSGKGRPLVFHDITLALTM 359

Query: 321 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           L+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR KIEE VWK+LMGWE
Sbjct: 360 LNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIEEQVWKMLMGWE 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548347|ref|XP_003542564.1| PREDICTED: uncharacterized protein LOC100816138 [Glycine max]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 285/412 (69%), Positives = 332/412 (80%), Gaps = 40/412 (9%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGILYDDVVIIS  +K+GDP ++TVNCPDKTGLGCDLCRIILFFGL+I+RG         
Sbjct: 1   MGILYDDVVIISPPEKDGDPTLLTVNCPDKTGLGCDLCRIILFFGLNILRGDVSTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS + YYR+++Q  KPSDVFLL   C+DRK
Sbjct: 61  YIVFWVVGKQRTRWSLLKKRLIEACPSFSSASGISYYRSDLQPSKPSDVFLLNFCCHDRK 120

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELELTI+KVK+STTPDGKV+DLFF+TDTRELLHT+KRK++T E+L  I+
Sbjct: 121 GLLHDVTEVLCELELTIKKVKVSTTPDGKVIDLFFITDTRELLHTKKRKDETIEYLTEIM 180

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 200
           G+A+IS D+E+VG EITACSQA  FLP+AI  D+  L++P     G+L    VS+T+DN 
Sbjct: 181 GDAIISIDIELVGPEITACSQAPPFLPTAITEDVFDLELPDLARGGTLRSDYVSITMDNL 240

Query: 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 260
           LSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRF+ + RG CEIDLFIMQADGKKI
Sbjct: 241 LSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTAKPRGKCEIDLFIMQADGKKI 300

Query: 261 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 320
           VDP+KQN LSSRL MELL+PLRV +VSRGPDTELLV+NPVELSGKGRPLVF+DITLALKM
Sbjct: 301 VDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGKGRPLVFYDITLALKM 360

Query: 321 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           LD CIF A+IGRH+IGDREWEVYR+LLDEG+GLSVPRNK+EEGVWK+LMGWE
Sbjct: 361 LDTCIFLAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441177|ref|XP_002268949.1| PREDICTED: uncharacterized protein LOC100265834 [Vitis vinifera] gi|297739971|emb|CBI30153.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/413 (70%), Positives = 326/413 (78%), Gaps = 43/413 (10%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVR---------- 50
           MGILYDDVVII  S+KEG+P V+TVNCPDKTGLGCDLCRIILFFGLSIVR          
Sbjct: 1   MGILYDDVVIIRPSEKEGEPRVLTVNCPDKTGLGCDLCRIILFFGLSIVRVDVSTDGKWC 60

Query: 51  -----------------------------GASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS   Y+  ++Q PKP DVFLLK  CYDRK
Sbjct: 61  YIVFWIIGKSTTRWSLLQDRLSEACPSCSSASGFSYF--QLQPPKPPDVFLLKFCCYDRK 118

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFF+TDTRELLHT+KR+EDT+ HLKT+L
Sbjct: 119 GLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFFITDTRELLHTKKRQEDTHNHLKTVL 178

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCS-NVSVTIDN 199
           G+AMISCD+ MVG+EITACSQ S+ LPSAI  ++       E PSG    S N+SVT+DN
Sbjct: 179 GDAMISCDISMVGSEITACSQTSTLLPSAITREIFGSKFEDEPPSGLPQVSGNISVTMDN 238

Query: 200 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 259
           SLSP HTLVQIVCQDHKGLLYD+MRTLKDYNI++SYGR + + R NCE+DLFIMQADGKK
Sbjct: 239 SLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKISYGRLTTKPRRNCEVDLFIMQADGKK 298

Query: 260 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 319
           +VDP KQN L SRL MELL+PLRV VVSRGPDTELLVANPVELSGKGRPLVF DIT ALK
Sbjct: 299 VVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTELLVANPVELSGKGRPLVFFDITHALK 358

Query: 320 MLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           ML++CIFSAEIGR MI DREWEVYR+LLDEGDGL VPRNKIEEGVWK+LMGWE
Sbjct: 359 MLNVCIFSAEIGRQMIADREWEVYRILLDEGDGLLVPRNKIEEGVWKMLMGWE 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817636|emb|CAN64495.1| hypothetical protein VITISV_004035 [Vitis vinifera]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/425 (68%), Positives = 326/425 (76%), Gaps = 55/425 (12%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVR---------- 50
           MGILYDDVVII  S+KEG+P V+TVNCPDKTGLGCDLCRIILFFGLSIVR          
Sbjct: 43  MGILYDDVVIIRPSEKEGEPRVLTVNCPDKTGLGCDLCRIILFFGLSIVRVDVSTDGKWC 102

Query: 51  -----------------------------GASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS   Y+  ++Q PKP DVFLLK  CYDRK
Sbjct: 103 YIVFWIIGKSTTRWSLLQDRLSEACPSCSSASGFSYF--QLQPPKPPDVFLLKFCCYDRK 160

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFF+TDTRELLHT+KR+EDT+ HLKT+L
Sbjct: 161 GLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFFITDTRELLHTKKRQEDTHNHLKTVL 220

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCS-NVSVTIDN 199
           G+AMISCD+ MVG+EITACSQ S+ LPSAI  ++       E PSG    S N+SVT+DN
Sbjct: 221 GDAMISCDISMVGSEITACSQTSTLLPSAITREIFGSKFEDEPPSGLPQVSGNISVTMDN 280

Query: 200 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 259
           SLSP HTLVQIVCQDHKGLLYD+MRTLKDYNI++SYGR + + R NCE+DLFIMQADGKK
Sbjct: 281 SLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKISYGRLTTKPRRNCEVDLFIMQADGKK 340

Query: 260 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 319
           +VDP KQN L SRL MELL+PLRV VVSRGPDTELLVANPVELSGKGRPLVF DIT ALK
Sbjct: 341 VVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTELLVANPVELSGKGRPLVFFDITHALK 400

Query: 320 MLDICIFS------------AEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL 367
           ML++CIFS            AEIGR MI DREWEVYR+LLDEGDGL VPRNKIEEGVWK+
Sbjct: 401 MLNVCIFSVLLYAPIIRVRWAEIGRQMIADREWEVYRILLDEGDGLLVPRNKIEEGVWKM 460

Query: 368 LMGWE 372
           LMGWE
Sbjct: 461 LMGWE 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105273|ref|XP_002333837.1| predicted protein [Populus trichocarpa] gi|222838705|gb|EEE77070.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/412 (70%), Positives = 324/412 (78%), Gaps = 42/412 (10%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGILYDDVVII  S+KEGDP VITVNCPDKTGLGCDLCRIILFFGLSIVRG         
Sbjct: 1   MGILYDDVVIIRHSEKEGDPAVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS + YY AE+Q P+P DVFLLKL+C+DRK
Sbjct: 61  YIVFSVVGKSTTRWGLLKKRLVGACPSCSSASGISYYTAELQPPRPPDVFLLKLACHDRK 120

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFFVTDT   +   KRKEDTY+HL+ ++
Sbjct: 121 GLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTSSCI-XNKRKEDTYDHLRAVM 179

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 200
           GN+MISCD+EMVG EITACS  SSFLP+AI  ++L L MP ELPS   + S   + +DN 
Sbjct: 180 GNSMISCDIEMVGPEITACSAESSFLPTAITENILPLQMPDELPSSLTSTSVSVI-MDNL 238

Query: 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 260
           LSP HTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRF  + R  CEIDLFIMQADGKKI
Sbjct: 239 LSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHRRTCEIDLFIMQADGKKI 298

Query: 261 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 320
           VDP+KQ  LSSRL MEL++PLRV VVSRGPDTEL+VANPVELSGKGRPLVFHDITLAL M
Sbjct: 299 VDPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELSGKGRPLVFHDITLALTM 358

Query: 321 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           L+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR KIEE VWK+LMGWE
Sbjct: 359 LNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIEEQVWKMLMGWE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056635|ref|XP_002298947.1| predicted protein [Populus trichocarpa] gi|222846205|gb|EEE83752.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/413 (70%), Positives = 332/413 (80%), Gaps = 42/413 (10%)

Query: 1   MGILYDD-VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG-------- 51
           MGILYDD VV+I QS+KEGDP VITVNCPDKTGLGCDLCRIILFFGLSIVRG        
Sbjct: 1   MGILYDDDVVVIRQSEKEGDPTVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKW 60

Query: 52  -------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDR 80
                                          AS + +YR+E+Q P+P DVFLLKLSC DR
Sbjct: 61  CYLVFWVVGKSTTRWGLLKKRLVEACPSCSSASGLSFYRSELQPPRPPDVFLLKLSCQDR 120

Query: 81  KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140
           +GLL+DVT+VLCELELTI+KVK+STTPDG+V+DLFF+TD RELLHT KRKEDT +HLK +
Sbjct: 121 RGLLHDVTSVLCELELTIKKVKVSTTPDGRVIDLFFITDNRELLHTNKRKEDTCDHLKAV 180

Query: 141 LGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDN 199
            GN+MISCD+E+VG EITACS  SSFLP+AI  ++L L+MP ELPS   + ++VSV +DN
Sbjct: 181 TGNSMISCDIEIVGPEITACSAESSFLPTAITENILPLEMPDELPSSLTS-TSVSVNMDN 239

Query: 200 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 259
           SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRFS      C+IDLF++Q DGKK
Sbjct: 240 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFSMNHGRACDIDLFLVQTDGKK 299

Query: 260 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 319
           IVDP KQ  LSSRL MEL++PLRV  VSRGPDTELLVANPVELSGKGRPLVFHDITLALK
Sbjct: 300 IVDPRKQKALSSRLEMELVRPLRVATVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 359

Query: 320 MLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           ML+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR+KIE+ VWK+LMGWE
Sbjct: 360 MLNTCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRSKIEKQVWKMLMGWE 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556900|ref|XP_002519483.1| amino acid binding protein, putative [Ricinus communis] gi|223541346|gb|EEF42897.1| amino acid binding protein, putative [Ricinus communis]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/413 (71%), Positives = 325/413 (78%), Gaps = 45/413 (10%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGILYDDVVII QS+KE D  VITVNCPDKTGLGCDLCRIILFFGLSIVRG         
Sbjct: 1   MGILYDDVVIIRQSEKESDLSVITVNCPDKTGLGCDLCRIILFFGLSIVRGDFSTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEM-QAPKPSDVFLLKLSCYDR 80
                                         AS + YYR E+ Q P+P DVFLLKL C+DR
Sbjct: 61  YIVFWVAGNSSTRWGLLKKRLLGVCPSCSSASGIPYYRDELLQPPRPPDVFLLKLCCHDR 120

Query: 81  KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140
           +GLL++VT VLCELELTI KVK+STTPDG+VMDLFFVTDTRELLHT KRKE+TY  LK++
Sbjct: 121 RGLLHNVTEVLCELELTIRKVKVSTTPDGRVMDLFFVTDTRELLHTNKRKEETYGQLKSV 180

Query: 141 LGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDN 199
           +G+ MISCD+EMVG EITACS  SS LP+ I  DMLH     E+P GSLT  +VSVT+DN
Sbjct: 181 IGDGMISCDIEMVGPEITACSLESSSLPTTITEDMLHW----EVPPGSLTSISVSVTMDN 236

Query: 200 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 259
           SLSPGHTLVQI CQDHKGLLYDIMRTLKDYNI++SYGRFS +QR NCEIDLFI+QADGKK
Sbjct: 237 SLSPGHTLVQIACQDHKGLLYDIMRTLKDYNIKISYGRFSIKQRRNCEIDLFIVQADGKK 296

Query: 260 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 319
           IVDPSKQ  L SRL MELL+PLRV VVSRGPD ELLVANPVELSG GRPLVFHDITLALK
Sbjct: 297 IVDPSKQGALCSRLEMELLRPLRVAVVSRGPDIELLVANPVELSGNGRPLVFHDITLALK 356

Query: 320 MLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 372
           ML   IFSAEI R MIGDRE+EVYRVLLDEG+GLSVPR+KI+E VW +LMGW+
Sbjct: 357 MLSTGIFSAEIRRCMIGDREYEVYRVLLDEGEGLSVPRSKIQERVWNMLMGWD 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440141|ref|XP_004137843.1| PREDICTED: uncharacterized protein LOC101221909 [Cucumis sativus] gi|449517335|ref|XP_004165701.1| PREDICTED: uncharacterized LOC101221909 [Cucumis sativus]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/410 (65%), Positives = 320/410 (78%), Gaps = 39/410 (9%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG--------- 51
           MGIL DDVV++  S+K+ +P VITVNCPDKTGLGCDLCRIILFFGL+IVRG         
Sbjct: 1   MGILQDDVVLVRPSEKDDEPTVITVNCPDKTGLGCDLCRIILFFGLNIVRGDVTTDGKWC 60

Query: 52  ------------------------------ASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 81
                                         AS++ Y+R E Q+ KP D+FLLK  C+DR+
Sbjct: 61  YIVFWVTGNSSTRWGLLKQRLMEVCPSCSSASMLSYFRPEPQSSKPPDMFLLKFCCHDRR 120

Query: 82  GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141
           GLL+DVT VLCELEL IEKVK+STTPDGKVMDLFF+ DTREL+HT KR+ DT EHLK +L
Sbjct: 121 GLLHDVTWVLCELELLIEKVKVSTTPDGKVMDLFFIIDTRELMHTAKRQRDTCEHLKHVL 180

Query: 142 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSL 201
           G+A+ISC++EM+ TE+  CSQASS  P  + +   L++  + PS SL   +VSVT+DNSL
Sbjct: 181 GDAVISCEIEMIDTEVMLCSQASSLPPEIVEESCSLELNEKSPSRSLASKDVSVTLDNSL 240

Query: 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIV 261
           SP HTLVQIVCQDHKGL+YDIMRTLKDYNIQ+SYGRF+++Q+  CEIDLFIMQADGKKI+
Sbjct: 241 SPSHTLVQIVCQDHKGLIYDIMRTLKDYNIQISYGRFNKKQKKICEIDLFIMQADGKKIL 300

Query: 262 DPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKML 321
           D SKQN LS+RL +EL++PLRV V+SRGPDTELLVANP ELSGKGRPLVF+DITLALK+L
Sbjct: 301 DQSKQNALSTRLQIELIRPLRVAVLSRGPDTELLVANPTELSGKGRPLVFYDITLALKLL 360

Query: 322 DICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW 371
           DI IF AEI RH+IGDREWEVYRV+LDEG G SVPR+KIEEGV K+LMGW
Sbjct: 361 DIGIFLAEIRRHLIGDREWEVYRVMLDEGAGSSVPRSKIEEGVRKMLMGW 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.830	0.753	0.667	8.7e-132
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.836	0.756	0.525	4.7e-99
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.478	0.392	0.229	1.5e-05
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.642	0.532	0.223	0.00015
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.577	0.487	0.243	0.00032
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.454	0.371	0.255	0.00033
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.357	0.307	0.272	0.00052

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
 Identities = 209/313 (66%), Positives = 249/313 (79%)

Query:    60 AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
             +E Q PK  D+FLLKL+C DR GLLYDVT VL +LE+ IEKVKISTTPDGKVMDLFFVTD
Sbjct:   102 SESQPPKLPDLFLLKLACSDRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTD 161

Query:   120 TRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDM 179
             TRELL T KR+ + YE+L+  +G++MIS D+E+VG EITACS +SS   +    +   D+
Sbjct:   162 TRELLGTVKRRNEVYEYLRDAIGDSMISYDIELVGPEITACSTSSSVAET----LFSSDV 217

Query:   180 PVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239
               E  SG  T SNVS+ +DNSLS  HTL+ I CQDHKGLLYDIMRT KD+NIQ+SYGRF+
Sbjct:   218 SGEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFT 277

Query:   240 RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANP 299
              +   NCEIDLFI+Q+DG+KI+D SK N L +RL  EL QPLRV +++RGPDTELLV NP
Sbjct:   278 IKLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNP 337

Query:   300 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNK 359
             VELSGKGRP VFHDI LALK +D CIFSAEIGRH+ GDREWEVY+VL++E D L +PR+K
Sbjct:   338 VELSGKGRPQVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIPRSK 397

Query:   360 IEEGVWKLLMGWE 372
             IEE VWK LMGWE
Sbjct:   398 IEEEVWKTLMGWE 410

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
 Identities = 168/320 (52%), Positives = 223/320 (69%)

Query:    57 YYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFF 116
             Y+  +    KP  ++LLK  C DRKGLL+DVT VL ELE TI++VK+ TTPDG+V+D+FF
Sbjct:    96 YFCLQSNVSKPPSLYLLKFFCRDRKGLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFF 155

Query:   117 VTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLH 176
             +TD  +LLHT++R+  T +HL  +LG   +SC++E+ G E+ +  + SS  P A  ++  
Sbjct:   156 ITDAMDLLHTKQRQTKTCDHLTAVLGEHGVSCELELAGPELESVQRFSSLPPLAADELFG 215

Query:   177 LDMPVELPSGSLTCSNVSV-TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSY 235
              D   ++ SGS   SN +V T+DN LSP HTL+QI C D KGL YDI+RT KD ++ ++Y
Sbjct:   216 PD-GFDI-SGS--SSNKAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAY 271

Query:   236 GRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELL 295
             GRFS + +G   ++LF+   DG KI+DP  Q    +RL  E++ PLRV +V+RGPDTELL
Sbjct:   272 GRFSSKVKGYRNLELFVRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELL 331

Query:   296 VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355
             VANPVELSGKGRP VF+D+TLALK L ICIFSAEIGRH   DR+WEVYR LLDE     +
Sbjct:   332 VANPVELSGKGRPRVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPL 391

Query:   356 P----RNKIEEGVWKLLMGW 371
                  RN++ + V K LMGW
Sbjct:   392 ASLRARNQVVDRVTKTLMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 44/192 (22%), Positives = 87/192 (45%)

Query:    73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 132
             +++   DR GLL +V+AVL +L + +   + + T + ++  + +V D     +   R  D
Sbjct:   131 IEIIARDRPGLLSEVSAVLADLNINVVAAE-AWTHNRRIACVLYVND-----NATSRAVD 184

Query:   133 TYEHLKTI---LGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPS---G 186
               E L ++   L N +  C+ +      T+ S  S+ +   +  M   D   E  +    
Sbjct:   185 DPERLSSMEEQLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDD 244

Query:   187 SLTCS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN 245
             S +C     +T+++    G++++ + C+D   L++DI+ TL D    V +   S     +
Sbjct:   245 SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISS-SGSH 303

Query:   246 CEIDLFIMQADG 257
                + FI   DG
Sbjct:   304 ASQEYFIRHKDG 315

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
 Identities = 58/259 (22%), Positives = 112/259 (43%)

Query:    73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 132
             L+L+  DR GLL +V AVL +LE  + + K + T +G++  + +V D            D
Sbjct:   116 LELTGTDRVGLLSEVFAVLADLECDVVEAK-AWTHNGRIASMIYVKDGNSGTPI-DGDSD 173

Query:   133 TYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSN 192
               + ++  L N + + D     T        ++ +   +   + +D   E     +  S 
Sbjct:   174 RVQRVEGQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYE-KKFDIEKSP 232

Query:   193 VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI 252
             + V++ N    G+++V + C+D   LL+D++ TL D    V +    R       ++ ++
Sbjct:   233 I-VSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAI-RTVGETAFLEFYV 290

Query:   253 MQADGKKIV-DPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVF 311
               +DG  +  +P +Q          L+Q L+  +  R      +    +EL    RP + 
Sbjct:   291 RHSDGHPVSSEPERQR---------LIQCLQAAIERR-----TVKGVRLELCTADRPGLL 336

Query:   312 HDITLALKMLDICIFSAEI 330
              ++T  L+   + I  AEI
Sbjct:   337 AEVTRILRENGLNIARAEI 355

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
 Identities = 57/234 (24%), Positives = 103/234 (44%)

Query:    73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT---RELLHTRKR 129
             L+L+  DR GLL ++ AVL +L   +   K+  T +G+V  + ++ D      +L +  R
Sbjct:   116 LELTGTDRIGLLSEMFAVLSDLNCDVVDAKL-WTHNGRVASVIYLKDCISGAPILDSH-R 173

Query:   130 KEDTYEHLKTILGNAMISCDVEMVG-TEITACSQASSFLPSAIIDMLHLDMPVELPSGSL 188
                    LK +L       DV     T +T  S     +   +  ++  D   E  S   
Sbjct:   174 ISKIEGRLKNVLNG---DNDVNSAAKTCVTVDSMMH--IERRLHQLMFEDRDYERRSKKH 228

Query:   189 TCSN-VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 247
               S  V VT+ N    G+++V + C+D   LL+D++ TL D    V +   +  +     
Sbjct:   229 ERSPMVVVTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAE-DQAH 287

Query:   248 IDLFIMQADGKKIVDPSKQNG----LSSRLWMELLQPLRVTVVSRGPDTELLVA 297
             ++ +I   DG  I   +++      L + +    L+ +R+ +  R PD + L+A
Sbjct:   288 LEFYIRHKDGSPISSEAERQRVIQCLEAAVERRALEGVRLEL--RHPDKQGLLA 339

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
 Identities = 46/180 (25%), Positives = 82/180 (45%)

Query:   195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 253
             V IDN      T++++   +  G+L ++++ L D N+ ++    S    G   +D+F + 
Sbjct:    27 VVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYIS--SDGGWFMDVFNVT 84

Query:   254 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHD 313
               DG K+ D    + +   L  E      +  V   P T+  V   +EL+G  RP +  +
Sbjct:    85 DQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTV---IELTGCDRPGLLSE 141

Query:   314 ITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD-EGDGLSVPR--NKIEEGVWKLLMG 370
             ++  L  L   + +AEI  H    R   V +V  D  G G+S P   ++I+  +  +L G
Sbjct:   142 LSAVLTHLKCSVLNAEIWTH--NTRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNVLKG 199

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00052, P = 0.00052
 Identities = 39/143 (27%), Positives = 67/143 (46%)

Query:   195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 253
             V IDN+ S   T++Q+   +  G L ++++ L D N+ +     S    G   +D+F ++
Sbjct:    18 VVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS--SDGGWFMDVFKVI 75

Query:   254 QADGKKIVDPSKQNGLSSRLWME---LLQPLRVTVVSRGPDTELLVANPVELSGKGRPLV 310
               DG KI D    + +  R+       + PLR +V    P  E      +EL+G  RP +
Sbjct:    76 DQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVM-PTDEY---TSIELAGTDRPGL 131

Query:   311 FHDITLALKMLDICIFSAEIGRH 333
               +++  L  L   + +AEI  H
Sbjct:   132 LSEVSAVLTDLHCNVVNAEIWTH 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      372       372   0.00087  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  249 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.18u 0.11s 30.29t   Elapsed:  00:00:01
  Total cpu time:  30.18u 0.11s 30.29t   Elapsed:  00:00:01
  Start:  Sat May 11 11:19:56 2013   End:  Sat May 11 11:19:57 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	2e-38
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	2e-38
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	5e-38
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-15
cd04894	69	cd04894, ACT_ACR-like_1, ACT domain-containing pro	9e-15
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	6e-09
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-08
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	1e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	6e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	8e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	7e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	0.002
pfam01842	66	pfam01842, ACT, ACT domain	0.002
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.003
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (332), Expect = 2e-38
 Identities = 54/77 (70%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 298 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL---S 354
           NPVELSGKGRP VF+DITLALK L ICIFSAEIGRH  GDR+WEVYRVLL E D L    
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGG 60

Query: 355 VPRNKIEEGVWKLLMGW 371
             R+K+ + V K LMGW
Sbjct: 61  RQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (332), Expect = 2e-38
 Identities = 55/76 (72%), Positives = 70/76 (92%)

Query: 71  FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 130
           FLLKL C DRKGLL+DVT VL ELELTIE+VK+STTPDG+V+DLFF+TD RELLHT+KR+
Sbjct: 1   FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRR 60

Query: 131 EDTYEHLKTILGNAMI 146
           E+TY++L+ +LG++MI
Sbjct: 61  EETYDYLRAVLGDSMI 76

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (330), Expect = 5e-38
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query: 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 265
           TL+QI C D KGLLYDI+RT KD NIQ+SYGRFS + +G  E+DLFI+Q+DGKKI+DP K
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 266 QNGLSSRLWMELLQP 280
           Q  L +RL  E++ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 71  FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 130
            +L+L+  DR GLL DVT VL EL L I   KI+T  + +  D+F+VTD        +R+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTDADGQPLDPERQ 59

Query: 131 EDTYEHLKTILGNAM 145
               E L+  LG A+
Sbjct: 60  ----EALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153166 cd04894, ACT_ACR-like_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 68.3 bits (167), Expect = 9e-15
 Identities = 26/31 (83%), Positives = 28/31 (90%)

Query: 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGA 52
          VIT+NCPDKTGLGCDLCRIIL FGL+I RG 
Sbjct: 2  VITINCPDKTGLGCDLCRIILEFGLNITRGD 32

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 69

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 72  LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKE 131
           ++++   DR GLL D+T VL +L L I   +ISTT + + +D+F+VTD+       +R  
Sbjct: 2   VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIA 60

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 51/207 (24%), Positives = 75/207 (36%), Gaps = 49/207 (23%)

Query: 79  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 138
           D  GL   +          I   +I TT DG+ +D F++ D         R ED    L 
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG------RDEDEPRRLA 794

Query: 139 TILGNAMISCDV---EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSV 195
            +     I  D    E+   E  A          A          V  P          V
Sbjct: 795 RL--AKAIE-DALSGEVRLPEALAKRTKPKKRARAFH--------VP-PR---------V 833

Query: 196 TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS------YGRFSRRQRGNCE-- 247
           TIDN  S   T++++  +D  GLLYD+ R L D N+ ++      YG          E  
Sbjct: 834 TIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYG----------ERA 883

Query: 248 IDLFIMQ-ADGKKIVDPSKQNGLSSRL 273
           +D+F +    G KI + ++Q  +   L
Sbjct: 884 VDVFYVTDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 51.4 bits (124), Expect = 7e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 265
           T+V++   D  GLL DI R L D  + +   R S    G   +D+F +     + +DP +
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRPLDPER 58

Query: 266 QNGLSSRLWMEL 277
              L   L   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 77  CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH 136
             DR  L   V A L    L+I   +I TT DG  +D F V +         R+      
Sbjct: 691 APDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGE 750

Query: 137 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 196
           L   L +             I    +     P                          VT
Sbjct: 751 LIEALLSGKAQPPRR---RRIPRKLRHFPIPPR-------------------------VT 782

Query: 197 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-A 255
           I  + S   T++++   D  GLL  +     D  + +   + +    G    D+FI+  A
Sbjct: 783 ILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDA 840

Query: 256 DGKKIVDPSKQNGLSSRL 273
           DG+ +    +Q+ L   L
Sbjct: 841 DGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 300 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR-N 358
           VE+    RP +  DIT  L  L + I  A I     G+R  +V+ V   +G  L   R  
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIA 60

Query: 359 KIEEGVWKLL 368
           ++EE +   L
Sbjct: 61  RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 32/201 (15%)

Query: 69  DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD-TRELLHTR 127
           +VF+      D+ GL   V   L  L L++   +++TT DG  +D F V D         
Sbjct: 670 EVFIY---APDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAE 726

Query: 128 KRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 187
           +  ++  + L  +L       D            Q  +  P                   
Sbjct: 727 RVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPR------------------ 768

Query: 188 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 247
                  VTI N+ S   T++++   D  GLL  + RTL++  + +   + +    G   
Sbjct: 769 -------VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT--TFGEKA 819

Query: 248 IDLFIMQ-ADGKKIVDPSKQN 267
            D+F +    G K+ D  +Q 
Sbjct: 820 EDVFYVTDLFGLKLTDEEEQR 840

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 130
           L +S  DR GLL  V +VL E  + I  ++  T+ DG   D+F V D    L      
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEA 58

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 79  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
           DR GL   +   L +L L I   +I TT DG  +D F V D
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD 50

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
           L+L   DR GLL DVT V  E  LT+ + +IST      +++F+VTD
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 69  DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 128
           D  +L++   DR GLL  +  V  +L L++   KI TT   +V D+F VTD        +
Sbjct: 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADGQALNAE 848

Query: 129 RKE 131
            ++
Sbjct: 849 LRQ 851

Length = 867

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 79  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 138
           DR GLL  V+ V  EL L +   KI+T  + K  D F +T+ +      + ++     L 
Sbjct: 792 DRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLL 850

Query: 139 TILG 142
           + L 
Sbjct: 851 SNLS 854

Length = 854

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 68  SDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVTD 119
           S+ F +++++  DR GLLYD+T  L +L L I    I+T   G + +D+F+VTD
Sbjct: 840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTD 891

Length = 931

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDL-FFVTDTREL 123
           +++   DR GLL D+T V+ E ++ I  V   T  DG   + L   V D   L
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHL 53

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 59  RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
           R +++  +    ++L +S  DR GLLY +  VL E  +++   KI+T  + +V D F + 
Sbjct: 775 RVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGE-RVEDTFLID 833

Query: 119 DTR 121
            + 
Sbjct: 834 GSG 836

Length = 856

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKR 129
           L++   DR GLL +V   L +  + IE +  ST+ D   ++ +  V D  +L    + 
Sbjct: 3   LEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 72  LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDLFFVTD 119
           L+K+    + G+L +   VL +L+L I K  IS+  DG   MD+F VTD
Sbjct: 3   LVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGWFMDVFHVTD 49

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 36/210 (17%)

Query: 79  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT--RELLHTRKRKEDTYEH 136
           D+        A + +L L I   +I T+     +D + V D     +     R E   E 
Sbjct: 713 DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREG 772

Query: 137 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 196
           L   L N                        P     ++   +P +L   +       VT
Sbjct: 773 LTEALRN------------------------PDDYPTIIQRRVPRQLKHFAFP---TQVT 805

Query: 197 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR-QRGNCEIDLFIMQA 255
           I N      T+++I+  D  GLL  I R   ++++ +   + +   +R   E   FI  A
Sbjct: 806 ISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGER--VEDVFFITDA 863

Query: 256 DGKKIVDPSKQNGLSSRLWMELLQPLRVTV 285
           D + + DP     L SRL   + + L    
Sbjct: 864 DNQPLSDP----QLCSRLQDAICEQLDARN 889

Length = 895

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFF---VTDTREL 123
           L++   DR GLL D+T V+   +  I  V    + D  +  +     V D   L
Sbjct: 7   LEIEAIDRPGLLADITTVISNEKANILSVNAE-SKDNGIATINLTLEVKDLEHL 59

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.97
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.94
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.93
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK05007	884	PII uridylyl-transferase; Provisional	99.88
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.88
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.87
PRK04374	869	PII uridylyl-transferase; Provisional	99.87
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.86
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.85
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.85
PRK03059	856	PII uridylyl-transferase; Provisional	99.83
PRK03381	774	PII uridylyl-transferase; Provisional	99.82
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.81
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.79
PRK05092	931	PII uridylyl-transferase; Provisional	99.79
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.79
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.71
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.7
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.68
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.66
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.63
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.62
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.56
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.53
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.49
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.48
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.46
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.46
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.36
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.29
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.26
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.16
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.16
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.12
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.11
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.03
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.85
PRK00227	693	glnD PII uridylyl-transferase; Provisional	98.76
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.72
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.63
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.62
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.57
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.42
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.41
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.34
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.34
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.33
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.31
COG4747	142	ACT domain-containing protein [General function pr	98.29
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.06
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.04
PRK07431	587	aspartate kinase; Provisional	97.96
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.95
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.93
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.88
PRK00194	90	hypothetical protein; Validated	97.82
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.81
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.81
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.79
PRK00194	90	hypothetical protein; Validated	97.77
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.72
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.72
COG4747	142	ACT domain-containing protein [General function pr	97.63
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.52
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.48
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.43
COG3830	90	ACT domain-containing protein [Signal transduction	97.41
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.39
COG3830	90	ACT domain-containing protein [Signal transduction	97.38
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.36
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.34
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.33
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.29
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.25
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.23
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.23
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.22
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.18
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.14
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.11
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.11
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.02
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.99
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.95
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.93
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.92
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.92
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.88
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.85
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.83
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.8
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.79
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.75
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.75
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.75
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.75
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.72
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.72
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.71
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.66
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.66
PRK08577	136	hypothetical protein; Provisional	96.65
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.61
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.61
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.58
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.53
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.5
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.49
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.47
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.45
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.43
cd02116	60	ACT ACT domains are commonly involved in specifica	96.43
PRK08577	136	hypothetical protein; Provisional	96.39
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.39
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.38
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.36
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.36
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.3
PRK07431	587	aspartate kinase; Provisional	96.29
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.28
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.27
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.23
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.22
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.21
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.16
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.1
PRK04435	147	hypothetical protein; Provisional	96.01
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.92
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	95.9
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.86
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.85
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.83
cd02116	60	ACT ACT domains are commonly involved in specifica	95.8
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.8
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.79
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.67
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.67
PRK04435	147	hypothetical protein; Provisional	95.64
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.64
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.55
PRK07334	403	threonine dehydratase; Provisional	95.53
PRK07334	403	threonine dehydratase; Provisional	95.41
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.28
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.2
PRK06635	404	aspartate kinase; Reviewed	95.19
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.68
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.62
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.35
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.23
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.18
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.15
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	94.14
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.13
PRK06291	465	aspartate kinase; Provisional	93.89
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.8
PRK06635	404	aspartate kinase; Reviewed	93.75
PRK11899	279	prephenate dehydratase; Provisional	93.73
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.71
PLN02551	521	aspartokinase	93.57
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.53
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.28
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.19
PRK11899	279	prephenate dehydratase; Provisional	93.12
PRK06291	465	aspartate kinase; Provisional	92.96
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.8
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.76
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.64
PRK08210	403	aspartate kinase I; Reviewed	92.54
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	92.48
PRK08210	403	aspartate kinase I; Reviewed	92.25
COG1707	218	ACT domain-containing protein [General function pr	92.14
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	91.84
COG1707	218	ACT domain-containing protein [General function pr	91.7
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	91.65
PLN02551	521	aspartokinase	91.51
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.17
PRK06382	406	threonine dehydratase; Provisional	91.12
PRK09034	454	aspartate kinase; Reviewed	90.59
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.62
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	89.58
PRK09181	475	aspartate kinase; Validated	89.56
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.43
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	89.27
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.9
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	88.88
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	88.78
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	88.58
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	87.96
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	87.94
PRK09181	475	aspartate kinase; Validated	87.72
PRK06382	406	threonine dehydratase; Provisional	87.67
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	87.34
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.33
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.84
PRK09084	448	aspartate kinase III; Validated	86.78
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.54
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.53
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	86.5
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	86.42
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	86.17
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	85.73
PRK11898	283	prephenate dehydratase; Provisional	85.59
PRK09034	454	aspartate kinase; Reviewed	85.48
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	85.11
PRK08198	404	threonine dehydratase; Provisional	84.93
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	84.63
PRK08198	404	threonine dehydratase; Provisional	83.79
PRK06545	359	prephenate dehydrogenase; Validated	83.78
PRK06349	426	homoserine dehydrogenase; Provisional	83.75
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	83.59
PRK12483	521	threonine dehydratase; Reviewed	83.55
PRK08818	370	prephenate dehydrogenase; Provisional	82.62
PRK06349	426	homoserine dehydrogenase; Provisional	81.84
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	81.68
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	81.64
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	81.62
PLN02317	382	arogenate dehydratase	81.59
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	81.56
PRK09224	504	threonine dehydratase; Reviewed	81.25
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	81.13
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	81.06
PLN02317	382	arogenate dehydratase	81.05
PRK08818	370	prephenate dehydrogenase; Provisional	80.74
PRK09084	448	aspartate kinase III; Validated	80.49
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	80.15

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=3.1e-29  Score=271.04  Aligned_cols=179  Identities=21%  Similarity=0.308  Sum_probs=154.2

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccc
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  146 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~  146 (372)
                      ..+.+.|+|+++||||||++|+++|+.+|+||++|+|.|+.+|+++|+|+|++.+|.+++++++++|++.|.++|.+...
T Consensus       674 ~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~~  753 (854)
T PRK01759        674 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNKL  753 (854)
T ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            44789999999999999999999999999999999999989999999999999999877778899999999999976420


Q ss_pred             ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHH
Q 017424          147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL  226 (372)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L  226 (372)
                      .        ..      ....++               ....+..||+|.|+|+.+..+|+|+|.+.|||||||+|+++|
T Consensus       754 ~--------~~------~~~~~~---------------~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l  804 (854)
T PRK01759        754 K--------KL------NLEENH---------------KLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVF  804 (854)
T ss_pred             c--------ch------hccccc---------------cccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHH
Confidence            0        00      000011               111235689999999999999999999999999999999999


Q ss_pred             HhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424          227 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       227 ~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      .++|++|+.|||+  |.|++++|+|||+ .+|+|++++++ ++|+++|.+++
T Consensus       805 ~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        805 SELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            9999999999999  9999999999997 68999987655 99999998776

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=4.1e-29  Score=270.90  Aligned_cols=182  Identities=22%  Similarity=0.230  Sum_probs=156.9

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccc
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  146 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~  146 (372)
                      ..+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.++++++++++++.|.++|.+...
T Consensus       698 ~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~~  777 (884)
T PRK05007        698 TRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSSP  777 (884)
T ss_pred             CCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            34689999999999999999999999999999999999999999999999999998877778899999999999976421


Q ss_pred             ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHH
Q 017424          147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL  226 (372)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L  226 (372)
                      ..      + ..      ...++               ....+..+|+|.|+|+.++.+|+|+|.+.|||||||+|+++|
T Consensus       778 ~~------~-~~------~~~~~---------------~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l  829 (884)
T PRK05007        778 QP------P-KP------RRLPA---------------KLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIF  829 (884)
T ss_pred             Cc------c-cc------ccccc---------------ccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHH
Confidence            00      0 00      00111               112245689999999999999999999999999999999999


Q ss_pred             HhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          227 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       227 ~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      .++|++|++|||+  |.|++++|+|||+ .+|.|++ +++++.|+++|.+++..
T Consensus       830 ~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        830 ADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999  9999999999997 6799997 77899999999998864

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.1e-26  Score=249.92  Aligned_cols=184  Identities=22%  Similarity=0.254  Sum_probs=156.8

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC--CHhHHHHHHHHHHHHHcccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~--~~~~~~~l~~~L~~~L~~~~  145 (372)
                      ++.+.|.|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.++  +++++++|++.|.++|.+..
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~  781 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD  781 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999999999999999999999999999999999999998763  35789999999999997643


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT  225 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~  225 (372)
                      ...      ...      ..+.+++               ...+..+|.|.|++..+.++|+|+|.+.||||||++|+++
T Consensus       782 ~~~------~~~------~~~~~~~---------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~  834 (895)
T PRK00275        782 DYP------TII------QRRVPRQ---------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRI  834 (895)
T ss_pred             ccc------hhh------hhhhhhh---------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHH
Confidence            100      000      0011111               1123457899999999999999999999999999999999


Q ss_pred             HHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424          226 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  280 (372)
Q Consensus       226 L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~~  280 (372)
                      |+++|+||..|+|+  |.|+++.|+|||+ .+|.++.+++++++|+++|.+++..+
T Consensus       835 L~~~~l~I~~AkI~--T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        835 FLEFDLSLQNAKIA--TLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHCCCEEEEeEEE--ecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999  7799999999997 68999988889999999999999754

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.95  E-value=2.8e-26  Score=249.06  Aligned_cols=183  Identities=22%  Similarity=0.269  Sum_probs=153.5

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCC-HhHHHHHHHHHHHHHcccc
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHT-RKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~-~~~~~~l~~~L~~~L~~~~  145 (372)
                      +.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.+++ +++++++++.|.++|.+..
T Consensus       665 ~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~  744 (850)
T TIGR01693       665 PSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA  744 (850)
T ss_pred             CCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence            357899999999999999999999999999999999998999999999999999887654 5678999999999997642


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT  225 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~  225 (372)
                      ...      +... .   ....++               +...+..+|+|.|+|+.++.+|+|+|.|.||||||++|+++
T Consensus       745 ~~~------~~~~-~---~~~~~~---------------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~  799 (850)
T TIGR01693       745 KDP------DTIS-A---RRARRR---------------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRT  799 (850)
T ss_pred             ccc------cccc-c---ccCCcc---------------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHH
Confidence            100      0000 0   000111               11123568999999999999999999999999999999999


Q ss_pred             HHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424          226 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       226 L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      |+++|++|++|+|+  |.|+++.|+||++ ..|.|+++ ++++.|+++|.+++
T Consensus       800 l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       800 LEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999  8999999999998 57999986 78899999998776

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.9e-25  Score=241.16  Aligned_cols=179  Identities=18%  Similarity=0.256  Sum_probs=151.0

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  147 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~  147 (372)
                      .+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|++++|..  .++++++++.|.++|.++...
T Consensus       688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~~~  765 (869)
T PRK04374        688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDLQK  765 (869)
T ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCCCc
Confidence            468899999999999999999999999999999999999999999999999988763  456888999999999874210


Q ss_pred             cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424          148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  227 (372)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~  227 (372)
                      .       ...     ....++               ....+.++|+|.|++..++++|+|+|.+.||||||++|+.+|+
T Consensus       766 ~-------~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~  818 (869)
T PRK04374        766 V-------RPA-----RRAVPR---------------QLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLR  818 (869)
T ss_pred             c-------ccc-----cccCcc---------------cccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHH
Confidence            0       000     000111               1123456899999999999999999999999999999999999


Q ss_pred             hCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhc
Q 017424          228 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       228 ~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ++|+||..|+|+  |.|+++.|+|||+ .+|.++.++++ ++|+++|.+++.
T Consensus       819 ~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        819 MQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999999  7899999999997 67888876655 999999998874

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=8.4e-25  Score=239.16  Aligned_cols=186  Identities=23%  Similarity=0.327  Sum_probs=156.5

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHccccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNAMI  146 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~~~~~  146 (372)
                      ++.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.+. +++++++|++.|.+++.+...
T Consensus       730 ~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  809 (931)
T PRK05092        730 RGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVR  809 (931)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999999999999999999999999888753 568899999999998865321


Q ss_pred             ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHH
Q 017424          147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL  226 (372)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L  226 (372)
                      ..       ..         ..++. +.        ..+...+..+|+|.|+|..+..+|+|+|.+.||||||++|+++|
T Consensus       810 ~~-------~~---------~~~r~-~~--------~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l  864 (931)
T PRK05092        810 LP-------EA---------LAKRT-KP--------KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL  864 (931)
T ss_pred             Cc-------cc---------ccccc-Cc--------cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHH
Confidence            00       00         00000 00        00111235678999999999999999999999999999999999


Q ss_pred             HhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424          227 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  280 (372)
Q Consensus       227 ~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~~  280 (372)
                      +++|+||.+|+|.  |.|+++.|+|||+ .+|.++.+++++++|+++|.+++..+
T Consensus       865 ~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        865 SDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             HHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            9999999999999  8899999999997 68999999989999999999999754

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=5.4e-25  Score=237.97  Aligned_cols=180  Identities=20%  Similarity=0.220  Sum_probs=150.6

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  147 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~  147 (372)
                      .+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+++|...++++++++++.|.++|.++...
T Consensus       676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~  755 (856)
T PRK03059        676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQAPL  755 (856)
T ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCCCc
Confidence            46889999999999999999999999999999999999999999999999998887545678999999999999764310


Q ss_pred             cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424          148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  227 (372)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~  227 (372)
                      .       ...     ....++               +...+..+++|.+++..++++|+|+|.++||||||++|+.+|+
T Consensus       756 ~-------~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~  808 (856)
T PRK03059        756 P-------EPS-----KGRLSR---------------QVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLA  808 (856)
T ss_pred             c-------hhh-----cccccc---------------cccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHH
Confidence            0       000     000111               1122456789999999999999999999999999999999999


Q ss_pred             hCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          228 DYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       228 ~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .+|+||..|+|+  |.|+++.|+|||+  +.++.+++++++|++.|.+++.
T Consensus       809 ~~~l~I~~AkI~--T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        809 EHRVSVHTAKIN--TLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HCCCeEEEEEEe--ecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999  7799999999994  3446678899999999988764

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.2e-25  Score=226.70  Aligned_cols=179  Identities=23%  Similarity=0.246  Sum_probs=152.1

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  148 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~  148 (372)
                      +.+.|.|+++|+|.||+.+++++...|+||++|+|+|+.+|+++|+|+|++++|.++++.+...++..|.+++.....  
T Consensus       683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~--  760 (867)
T COG2844         683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKA--  760 (867)
T ss_pred             CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCC--
Confidence            678999999999999999999999999999999999999999999999999999888888888888888888865310  


Q ss_pred             ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424          149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  228 (372)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~  228 (372)
                           .+..      ....++               +..++.++|+|.|.|..+..+|+|||.+.||||||++++++|++
T Consensus       761 -----~~~~------~~r~~r---------------~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~d  814 (867)
T COG2844         761 -----QPPR------RRRIPR---------------KLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFAD  814 (867)
T ss_pred             -----CCcc------ccccCc---------------ccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHh
Confidence                 0100      011111               22345678999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhc
Q 017424          229 YNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       229 ~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ++++|++|||+  |.|++++|+|||+ ..|.+++ ++.++.+.+.|.+.+.
T Consensus       815 l~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         815 LGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             cccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence            99999999999  9999999999998 6899994 5666777777776654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=5.3e-24  Score=228.30  Aligned_cols=176  Identities=19%  Similarity=0.269  Sum_probs=142.8

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  147 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~  147 (372)
                      .+.+.|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|....   ++++++.|+++|.+....
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~~---~~~l~~~L~~~L~~~~~~  672 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPPD---AALLRQDLRRALDGDLDV  672 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcch---HHHHHHHHHHHHcCCCch
Confidence            57899999999999999999999999999999999987 79999999999998886432   588999999998764210


Q ss_pred             cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424          148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  227 (372)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~  227 (372)
                      .      .......  ....++               +...+..++.|.+++..+.++|+|+|.+.||||||++|+++|+
T Consensus       673 ~------~~~~~~~--~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~  729 (774)
T PRK03381        673 L------ARLAARE--AAAAAV---------------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALE  729 (774)
T ss_pred             h------hhhhccc--cccccc---------------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHH
Confidence            0      0000000  000001               1112345789999999999999999999999999999999999


Q ss_pred             hCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424          228 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       228 ~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ++|+||..|+|.  |.|+++.|+|||+ .+|.+++++  ++.|+++|.
T Consensus       730 ~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        730 RAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            999999999999  7899999999997 679999865  788888875

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.88  E-value=3.2e-21  Score=209.54  Aligned_cols=172  Identities=20%  Similarity=0.232  Sum_probs=140.0

Q ss_pred             CCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHH
Q 017424          191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  269 (372)
Q Consensus       191 ~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l  269 (372)
                      .+|.|.+++.++.++|.|+|.++||||||++|+.+|+.+|+||.+|+|.| +.++.+.|+|||. .+|.+++ ++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T-~~dg~alD~F~V~d~~g~~~~-~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFT-SRDGMAMDTFIVLEPDGSPLS-QDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEE-cCCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence            46788899999999999999999999999999999999999999999984 3345999999997 6789884 6788999


Q ss_pred             HHHHHHHhcCCceEEEeec-----C----CCcceee-------eeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeee
Q 017424          270 SSRLWMELLQPLRVTVVSR-----G----PDTELLV-------ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  333 (372)
Q Consensus       270 ~~~L~~~l~~~~~v~i~~~-----g----~~~~~~~-------~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~  333 (372)
                      +++|.+++..+.......+     .    ..+.+.+       .+.+||.+.||||||++|+++|.++|++|.+|.|.+ 
T Consensus       765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T-  843 (884)
T PRK05007        765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT-  843 (884)
T ss_pred             HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-
Confidence            9999999976531110010     0    0122211       357999999999999999999999999999999998 


Q ss_pred             ccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHh
Q 017424          334 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  369 (372)
Q Consensus       334 ~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~  369 (372)
                       .|++  ++++|||.|.+|.|++ .+-.+.+++.|+
T Consensus       844 -~ger--a~DvFyV~~~~g~~l~-~~~~~~l~~~L~  875 (884)
T PRK05007        844 -IGER--VEDLFILATADRRALN-EELQQELRQRLT  875 (884)
T ss_pred             -cCce--EEEEEEEEcCCCCcCC-HHHHHHHHHHHH
Confidence             6667  9999999999999998 334566666554

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.88  E-value=2.5e-23  Score=154.67  Aligned_cols=73  Identities=74%  Similarity=1.132  Sum_probs=69.4

Q ss_pred             eeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC----hhhHHHHHHHHHhcc
Q 017424          298 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW  371 (372)
Q Consensus       298 ~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~----~~~~~~~vr~~~~~~  371 (372)
                      +|+|++|+.||.+++|||-+||.+|++||+|+|+||..++++||+|+|++.|..+. +.    |++|+|+||+.||||
T Consensus         1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999999999999999999999999999999888766 66    899999999999999

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.87  E-value=9.4e-21  Score=205.24  Aligned_cols=172  Identities=19%  Similarity=0.296  Sum_probs=141.7

Q ss_pred             CCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHH
Q 017424          191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  269 (372)
Q Consensus       191 ~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l  269 (372)
                      .+|.|.+++.++.++|.|+|.++||||||++|+.+|..+|+||.+|+|.| +.++.+.|+|||. .+|.++. +++++.|
T Consensus       663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T-~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT-SQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE-ccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            46788899999999999999999999999999999999999999999983 4889999999997 6899984 6788999


Q ss_pred             HHHHHHHhcCCceEEE---ee-c----CCCccee-------eeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeec
Q 017424          270 SSRLWMELLQPLRVTV---VS-R----GPDTELL-------VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM  334 (372)
Q Consensus       270 ~~~L~~~l~~~~~v~i---~~-~----g~~~~~~-------~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~  334 (372)
                      ++.|..++..+.....   .+ .    ...+.+.       ..+.++|.+.||||||++|+++|.++|++|.+|.|.+  
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T--  818 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT--  818 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc--
Confidence            9999999976542111   00 0    0112222       1357999999999999999999999999999999998  


Q ss_pred             cCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHh
Q 017424          335 IGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  369 (372)
Q Consensus       335 ~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~  369 (372)
                      .|++  ++++|||.|.+|+|++.++. +.+++.|+
T Consensus       819 ~ger--v~D~Fyv~~~~g~~l~~~~~-~~l~~~L~  850 (854)
T PRK01759        819 IGEK--AEDFFILTNQQGQALDEEER-KALKSRLL  850 (854)
T ss_pred             cCce--EEEEEEEECCCCCcCChHHH-HHHHHHHH
Confidence            6667  99999999999999984323 66666554

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.87  E-value=8.4e-21  Score=205.29  Aligned_cols=136  Identities=21%  Similarity=0.229  Sum_probs=117.9

Q ss_pred             CcEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec----------------
Q 017424            6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE----------------   61 (372)
Q Consensus         6 ~~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d----------------   61 (372)
                      +++++.+...+..+.++|+|+++|+||||++||++|+.+|+||++|+|+|+        |+|.+                
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l  755 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAAL  755 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHH
Confidence            567777766777899999999999999999999999999999999999996        88864                


Q ss_pred             ---------------c-------CCCC----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC
Q 017424           62 ---------------M-------QAPK----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG  109 (372)
Q Consensus        62 ---------------~-------~~~~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~  109 (372)
                                     +       +|+.          .++.|+|+|++.||||||++|+++|+.+|+||++|+|+|. +|
T Consensus       756 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~  834 (869)
T PRK04374        756 RQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GE  834 (869)
T ss_pred             HHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CC
Confidence                           0       1111          2467899999999999999999999999999999999887 89


Q ss_pred             eEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424          110 KVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus       110 ~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      +++|+|||++++|.+++++..++|+++|.++|.
T Consensus       835 ~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        835 RAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             EEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            999999999998887655545999999988874

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.86  E-value=1.5e-20  Score=204.37  Aligned_cols=136  Identities=20%  Similarity=0.280  Sum_probs=116.3

Q ss_pred             CcEEEEEeccCC---CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec-------------
Q 017424            6 DDVVIISQSDKE---GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE-------------   61 (372)
Q Consensus         6 ~~~v~~~~~~~~---~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d-------------   61 (372)
                      ++++++ .+.+.   .+.++|+|+++||||||+++|++|+.+|+||++|+|+|+        |+|.|             
T Consensus       688 ~~~v~~-~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        688 GPLVLI-KETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCeEEE-EecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            456664 34443   589999999999999999999999999999999999886        88864             


Q ss_pred             -----------------------------cCCCC----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEE
Q 017424           62 -----------------------------MQAPK----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVK  102 (372)
Q Consensus        62 -----------------------------~~~~~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~  102 (372)
                                                   ++++.          ..+.|+|+|+++||||||++|+++|+.+|+||++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence                                         01111          236789999999999999999999999999999999


Q ss_pred             EEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHcc
Q 017424          103 ISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGN  143 (372)
Q Consensus       103 I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~~  143 (372)
                      |+|+ +|+++|+|||++.+|.++ +++++++|++.|.++|.+
T Consensus       847 I~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        847 IATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             EEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9887 899999999999988865 457889999999999965

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.85  E-value=9.2e-20  Score=198.31  Aligned_cols=172  Identities=20%  Similarity=0.239  Sum_probs=140.5

Q ss_pred             CcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHH
Q 017424          192 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  270 (372)
Q Consensus       192 ~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~  270 (372)
                      .+.|.+++.....+|.|+|.++||||||++|+.+|+.+|+||.+|+|.| |.++.+.|+|||+ .+|.++.+++++++|+
T Consensus       655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~t-t~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNT-TKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-ecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            4678888877789999999999999999999999999999999999986 6789999999998 6799998888899999


Q ss_pred             HHHHHHhcCCceEE--Eeec----------CCCcceee-------eeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424          271 SRLWMELLQPLRVT--VVSR----------GPDTELLV-------ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  331 (372)
Q Consensus       271 ~~L~~~l~~~~~v~--i~~~----------g~~~~~~~-------~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~  331 (372)
                      +.|.+++.......  +...          ...+.+.+       .+.++|.|.||||||++|+++|.++|++|.+|.|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            99999997643210  0000          01122222       35799999999999999999999999999999999


Q ss_pred             eeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHh
Q 017424          332 RHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  369 (372)
Q Consensus       332 ~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~  369 (372)
                      +  .|++  +++.||+.+..|.|++- +-.+.+++.|+
T Consensus       814 t--~~~~--~~d~F~v~~~~g~~~~~-~~~~~l~~~L~  846 (850)
T TIGR01693       814 T--FGEK--AEDVFYVTDLFGLKLTD-EEEQRLLEVLA  846 (850)
T ss_pred             e--cCcc--ceeEEEEECCCCCCCCH-HHHHHHHHHHH
Confidence            8  4444  89999999999999984 34556665554

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.85  E-value=1.1e-20  Score=144.32  Aligned_cols=73  Identities=19%  Similarity=0.367  Sum_probs=70.1

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      +|+|+|.|+|||||||+|+++|+++|++|++|+|+  |+|+++.|+|||+ .+|.|+.+++++++|+++|.+++.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            69999999999999999999999999999999999  9999999999997 6899999999999999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.83  E-value=1.3e-19  Score=196.40  Aligned_cols=133  Identities=23%  Similarity=0.366  Sum_probs=112.6

Q ss_pred             CcEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec----------------
Q 017424            6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE----------------   61 (372)
Q Consensus         6 ~~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d----------------   61 (372)
                      +++|+ .+..+..+.++|+|+++||||||+++|++|+.+|+||++|+|+|+        |+|.|                
T Consensus       665 ~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~  743 (856)
T PRK03059        665 TPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEH  743 (856)
T ss_pred             CCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHH
Confidence            45666 556667789999999999999999999999999999999999986        88853                


Q ss_pred             -----------------c-------CCCC----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC
Q 017424           62 -----------------M-------QAPK----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP  107 (372)
Q Consensus        62 -----------------~-------~~~~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~  107 (372)
                                       +       +|..          .++.|.|+|+++||||||++|+++|+.+|+||++|+|+|+ 
T Consensus       744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-  822 (856)
T PRK03059        744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-  822 (856)
T ss_pred             HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-
Confidence                             0       0111          2467899999999999999999999999999999999887 


Q ss_pred             CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424          108 DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus       108 ~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      +|+++|+|||+++.  ..+++++++|++.|.++|.
T Consensus       823 ~~~v~DvF~V~~~~--~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        823 GERVEDTFLIDGSG--LSDNRLQIQLETELLDALA  855 (856)
T ss_pred             CCEEEEEEEEcCCC--CCCHHHHHHHHHHHHHHhc
Confidence            89999999996533  2357889999999988764

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.82  E-value=4e-19  Score=190.87  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=106.7

Q ss_pred             EEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEEec-------------------
Q 017424            8 VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYRAE-------------------   61 (372)
Q Consensus         8 ~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v~d-------------------   61 (372)
                      +++...+++ .+.++|+|+|+||||||++||++|+.+||||++|+|+|.       |+|.+                   
T Consensus       588 ~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L  666 (774)
T PRK03381        588 VHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL  666 (774)
T ss_pred             CEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence            344455566 789999999999999999999999999999999999984       88764                   


Q ss_pred             --c--------CCC------------C----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC
Q 017424           62 --M--------QAP------------K----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG  109 (372)
Q Consensus        62 --~--------~~~------------~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~  109 (372)
                        .        ..+            .          ..+.++|+|+++||||||++|+++|+++|+||++|+|+|. +|
T Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~  745 (774)
T PRK03381        667 DGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GA  745 (774)
T ss_pred             cCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CC
Confidence              0        000            0          1246899999999999999999999999999999999876 89


Q ss_pred             eEEEEEEEEcCCCCCCCHhHHHHHHHHH
Q 017424          110 KVMDLFFVTDTRELLHTRKRKEDTYEHL  137 (372)
Q Consensus       110 ~~~DvF~V~~~~g~~~~~~~~~~l~~~L  137 (372)
                      +++|+|||++++|.+++++ ++.|+++|
T Consensus       746 ~a~D~F~V~d~~g~~~~~~-~~~l~~~L  772 (774)
T PRK03381        746 DVVDVFYVTGAAGGPLADA-RAAVEQAV  772 (774)
T ss_pred             eEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence            9999999999999877655 66666665

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=2.5e-19  Score=136.76  Aligned_cols=75  Identities=63%  Similarity=1.006  Sum_probs=70.9

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  280 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~  280 (372)
                      |+|+|.+.|||||||+|+++|+++|++|++|||++.|.|+++.|+|||+.+|+|++++++++.|+++|.+++.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999877889999999999778999999999999999999998865

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.6e-18  Score=180.02  Aligned_cols=134  Identities=28%  Similarity=0.383  Sum_probs=111.7

Q ss_pred             cEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec-----------------
Q 017424            7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE-----------------   61 (372)
Q Consensus         7 ~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d-----------------   61 (372)
                      ++|... ..+.++.++|+||+||+|.||+.+|+.+...|+||++|+|+|+        |+|+|                 
T Consensus       672 ~Lv~~~-~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~  750 (867)
T COG2844         672 PLVLIS-VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGE  750 (867)
T ss_pred             cceeee-ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHH
Confidence            455544 3455689999999999999999999999999999999999996        77763                 


Q ss_pred             ----------------------cCCCCC----------CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC
Q 017424           62 ----------------------MQAPKP----------SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG  109 (372)
Q Consensus        62 ----------------------~~~~~~----------~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~  109 (372)
                                            ++|+.+          ...++++|.+.||||||++++++|++++++|++|+| ||.|+
T Consensus       751 l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI-tT~GE  829 (867)
T COG2844         751 LIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI-TTFGE  829 (867)
T ss_pred             HHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeee-ccccc
Confidence                                  023332          247799999999999999999999999999999999 55789


Q ss_pred             eEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424          110 KVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus       110 ~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      +++|+|+|++..|.+++++..+.+.+.|.+++.
T Consensus       830 rveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~  862 (867)
T COG2844         830 RVEDVFIVTDADGQALNAELRQSLLQRLLEALL  862 (867)
T ss_pred             cceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence            999999999999988777666666666665554

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.79  E-value=1.1e-17  Score=183.53  Aligned_cols=175  Identities=23%  Similarity=0.312  Sum_probs=139.2

Q ss_pred             CCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHH
Q 017424          191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  269 (372)
Q Consensus       191 ~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l  269 (372)
                      .++.|.+.+...+++|.|.|.++||||||++|+.+|+.+|+||..|+|.| +.++.+.|+|+|. .+|.++.++++++.|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t-~~dg~alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT-TTDGRALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE-ecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence            35678788888889999999999999999999999999999999999984 4678899999997 678888788899999


Q ss_pred             HHHHHHHhcCCce--EEEeec-CC---------Cccee-------eeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEE
Q 017424          270 SSRLWMELLQPLR--VTVVSR-GP---------DTELL-------VANPVELSGKGRPLVFHDITLALKMLDICIFSAEI  330 (372)
Q Consensus       270 ~~~L~~~l~~~~~--v~i~~~-g~---------~~~~~-------~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i  330 (372)
                      ++.|..++.....  ..+..+ .+         .|.+.       ..+.++|.+.||||||++|+++|.++|++|.+|.|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            9999988854321  111000 00         11111       12579999999999999999999999999999999


Q ss_pred             eeeccCceeeeEEEEEEeCCCCCCCCh----hhHHHHHHHHHhc
Q 017424          331 GRHMIGDREWEVYRVLLDEGDGLSVPR----NKIEEGVWKLLMG  370 (372)
Q Consensus       331 ~~~~~~~~~~~~~~f~~~~~~g~~~~~----~~~~~~vr~~~~~  370 (372)
                      .+  .|++  ++++||+.|.+|.++..    +++.+.+...|.+
T Consensus       877 ~T--~~~~--~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        877 AT--YGER--AVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             EE--cCCE--EEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            97  3555  99999999999999873    3355555555543

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=7e-19  Score=133.35  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=65.0

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~  274 (372)
                      +|+|+|.+.|||||||+|+++|+++|++|++|+|+  |.|+++.|+|||+ .+|+|+.+++++++|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999  9999999999998 68999999999999999885

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=1.3e-16  Score=121.76  Aligned_cols=73  Identities=16%  Similarity=0.350  Sum_probs=66.5

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHcc
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGN  143 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~~  143 (372)
                      +++|+|.|+||||||++|+++|+++|++|.+|+|.| .++++.|+|||++.+|.++ ++++.++|++.|.++|..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            479999999999999999999999999999999966 6899999999999999875 577889999999998753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.70  E-value=1.6e-16  Score=120.50  Aligned_cols=68  Identities=29%  Similarity=0.352  Sum_probs=60.9

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLK  138 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~  138 (372)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.| .|++++|+|||++.+|.++ +++++++|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            479999999999999999999999999999999955 6899999999999999876 5677788877764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=4.1e-16  Score=120.17  Aligned_cols=72  Identities=72%  Similarity=1.152  Sum_probs=66.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcc
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  143 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~  143 (372)
                      +++|+++||||||++++++|+++|+||++|+|+|+.+|+++|+|+|++++|...++++++++++.|.++|++
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence            689999999999999999999999999999999888999999999999877755678899999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.66  E-value=8.1e-16  Score=117.53  Aligned_cols=71  Identities=31%  Similarity=0.339  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L  141 (372)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|++++|.++ ++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            5799999999999999999999999999999999998899999999999888765 5778899999888754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.63  E-value=2.2e-15  Score=115.04  Aligned_cols=71  Identities=25%  Similarity=0.396  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE-eeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHc
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS-TTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILG  142 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~-T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~  142 (372)
                      |+++|.++|||||||+|+++|+++|++|+.|+|. .|.|++++|+||| +.+|.++ ++++++.|++.|.++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999995 0468999999999 7777664 67888999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.62  E-value=4.5e-15  Score=113.77  Aligned_cols=71  Identities=25%  Similarity=0.365  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCC-CCCC-CHhHHHHHHHHHHHHHc
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLH-TRKRKEDTYEHLKTILG  142 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~-g~~~-~~~~~~~l~~~L~~~L~  142 (372)
                      |+|+|+++||||||++|+++|+++||||++|+|+|. +|+++|+|+|++++ |.+. ++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999876 89999999999987 6644 66889999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.56  E-value=8.3e-14  Score=125.38  Aligned_cols=159  Identities=9%  Similarity=0.084  Sum_probs=105.4

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  147 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~  147 (372)
                      ...++|++.|+|||||+++|+++|+++||||.+.+.. ..+|.+.-++.|..   .   +...++|+..|...-.. .  
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t-~lgg~Fa~i~lvs~---~---~~~~~~le~~L~~l~~~-~--   75 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA-MLGEEFTFIMLLSG---S---WNAITLIESTLPLKGAE-L--   75 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH-hhCCceEEEEEEeC---C---hhHHHHHHHHHHhhhhh-c--
Confidence            3678999999999999999999999999999999994 45677666676633   2   34567777777663211 1  


Q ss_pred             cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424          148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  227 (372)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~  227 (372)
                            +-..         .-++...                  .     .....+..+.++|.|.|||||+++++++|+
T Consensus        76 ------~L~i---------~v~~~~~------------------~-----~~~~~~~~~~v~v~G~DrPGIV~~vT~~la  117 (190)
T PRK11589         76 ------DLLI---------VMKRTTA------------------R-----PRPAMPATVWVQVEVADSPHLIERFTALFD  117 (190)
T ss_pred             ------CeEE---------EEEeccc------------------c-----ccccCCceEEEEEEECCCCCHHHHHHHHHH
Confidence                  0000         0000000                  0     001111258999999999999999999999


Q ss_pred             hCCceEEEEEEeeeecCC--eEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          228 DYNIQVSYGRFSRRQRGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       228 ~~~~~I~~a~i~~~t~g~--~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ++|+||.+  ++|.+++.  ...+.|.+..+- .+......+.|++.|.+..
T Consensus       118 ~~~iNI~~--L~T~~~~a~~~~~~lf~~~~~v-~lP~~~~~~~L~~~l~~l~  166 (190)
T PRK11589        118 SHHMNIAE--LVSRTQPAEGERPAQLHIQITA-HSPASQDAANIEQAFKALC  166 (190)
T ss_pred             HcCCChhh--eEEeeecCCCCCcccEEEEEEE-EcCCCCCHHHHHHHHHHHH
Confidence            99999997  55557774  677788654210 1111223567777765444

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.53  E-value=9.6e-14  Score=106.38  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cC-CCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~-g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      |+|+|.++||||||++|+++|+++|+||..|++.  |.|+.+.|.|||+ .+ |.++.++++++++++.|.+++.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  7799999999997 55 8888888899999999988774

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.49  E-value=2.9e-13  Score=101.36  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=57.6

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      +.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.-     -+.+++.|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            578999999999999999999999999999999999999999999999987751     245666666654

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.48  E-value=4.5e-13  Score=103.22  Aligned_cols=72  Identities=22%  Similarity=0.368  Sum_probs=64.0

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  280 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~~  280 (372)
                      ++||.++||||||++++++|+++|+||.+|+|.| |.++++.|+|||. .+|. ..++++++++++.|.+++++.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~   74 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDS   74 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchh
Confidence            6899999999999999999999999999999984 4889999999997 4455 557788999999999998764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.46  E-value=5.9e-13  Score=101.64  Aligned_cols=70  Identities=23%  Similarity=0.311  Sum_probs=62.8

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      +.|+|.++||||||++++++|+.+|+||.+|+|.  |. ++++.|.|||+ .+|.++.++++++++++.|.+++
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~--T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIF--TTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEE--EeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            6789999999999999999999999999999998  55 68999999997 67888878888999999987653

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.46  E-value=8.6e-13  Score=118.82  Aligned_cols=122  Identities=12%  Similarity=0.119  Sum_probs=91.6

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC-C
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-P  280 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~-~  280 (372)
                      ...+.+|++.|+|||||++.++++|+++|+||...+.+  ..|+...-.+.+.  |.    +...+.|+..|...-+. .
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~   76 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELD   76 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcC
Confidence            34689999999999999999999999999999999988  7788555555553  22    23678888888766533 5


Q ss_pred             ceEEEeecCC--CcceeeeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424          281 LRVTVVSRGP--DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  331 (372)
Q Consensus       281 ~~v~i~~~g~--~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~  331 (372)
                      +.+.+.....  .........+++.|.|||||++++|++|.+.|+||..=.-.
T Consensus        77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~  129 (190)
T PRK11589         77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR  129 (190)
T ss_pred             eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence            6666543221  11111135789999999999999999999999999554443

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.36  E-value=8.1e-12  Score=95.13  Aligned_cols=66  Identities=35%  Similarity=0.434  Sum_probs=57.2

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHL  137 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L  137 (372)
                      +.|+|.++||||+|++|+++|+++|+||.+|+++|. +++++|+|+|+++++.+.++++++++++.|
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l   67 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEI   67 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence            578999999999999999999999999999999775 679999999999887755666676665554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.29  E-value=3.2e-11  Score=90.67  Aligned_cols=70  Identities=40%  Similarity=0.526  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      |.|.|.++|+||+|++|+++|+++|+||.++++.+. +++++|+|++.+++|.+.+.++++++++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            478999999999999999999999999999999775 4699999999998887667778899999887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.26  E-value=1.1e-10  Score=123.58  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=114.8

Q ss_pred             EEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccccc
Q 017424           71 FLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCD  149 (372)
Q Consensus        71 ~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~  149 (372)
                      ..++|.. +|++|+|.+++++|+.++++|++|++.+  +|.+...|.|....|.++++   ..+++.+..++.++.+   
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~---  618 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDP---QEFLQAYKSGVYSELP---  618 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCCh---HHHHHHHHHhhcCCCC---
Confidence            4788888 9999999999999999999999999965  68888999999988887665   5677777777765421   


Q ss_pred             cccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhC
Q 017424          150 VEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDY  229 (372)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~  229 (372)
                             .          ..                    ..+|++.+..      +++||++.||||+|+.++++|.  
T Consensus       619 -------~----------~~--------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~--  653 (693)
T PRK00227        619 -------D----------PA--------------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP--  653 (693)
T ss_pred             -------c----------cc--------------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh--
Confidence                   0          00                    1245666643      8999999999999999999999  


Q ss_pred             CceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          230 NIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       230 ~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                        .|.+|+++  |.|..+.|.||+..       ...+.+++..+.+++.
T Consensus       654 --~~~~~~~~--~~g~~~~~~~~~~~-------~~~r~~~~~~~~~~~~  691 (693)
T PRK00227        654 --DLLWITAS--TPGATMIVQAALKP-------GFDRATVERDVTRVLA  691 (693)
T ss_pred             --hhhhHhhc--CCCcceEEEEEecC-------cccHHHHHHHHHHHHh
Confidence              77888898  99999999999972       1135677777776654

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.16  E-value=3.5e-10  Score=84.94  Aligned_cols=69  Identities=29%  Similarity=0.546  Sum_probs=61.1

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      |.|+|.+.||||+|++|+++|+++|++|.++++.  +.++.+.|.|++. .+|.+. +++++++|+++|..++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhhC
Confidence            6799999999999999999999999999999998  7777999999997 677774 6678899999987653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.16  E-value=1.9e-10  Score=99.87  Aligned_cols=160  Identities=10%  Similarity=0.103  Sum_probs=108.0

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  148 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~  148 (372)
                      ++.+|++++.||||+...++++..++||||.++++... ++.+.-+..+.-      +++...+|+..|.. +..+.   
T Consensus         4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~-g~~~a~i~lisg------s~dav~~le~~l~~-l~~~~---   72 (176)
T COG2716           4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAML-GEEFAGIMLISG------SWDAVTLLEATLPL-LGAEL---   72 (176)
T ss_pred             cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHh-hcceeEEEEEee------CHHHHHHHHHHhhc-ccccC---
Confidence            45899999999999999999999999999999999654 555544444432      35666777777655 33211   


Q ss_pred             ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424          149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  228 (372)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~  228 (372)
                             +..       ....|.                    .++   .....+..+.++|.+.||||++.++++.|.+
T Consensus        73 -------~L~-------v~m~rt--------------------~~~---~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~  115 (176)
T COG2716          73 -------DLL-------VVMKRT--------------------GAH---PTPANPAPVWVYVDANDRPGIVEEFTALFDG  115 (176)
T ss_pred             -------CeE-------EEEeec--------------------CCC---ccCCCCceEEEEEEecCCccHHHHHHHHHHh
Confidence                   010       000000                    011   1134556799999999999999999999999


Q ss_pred             CCceEEEEEEeeeecCCeEEEEEEEec-CCCCCCChhHHHHHHHHHHHHhc
Q 017424          229 YNIQVSYGRFSRRQRGNCEIDLFIMQA-DGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       229 ~~~~I~~a~i~~~t~g~~~~d~F~v~~-~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      +|+||.+-.-.+....+.....|.++. -+-|..  -....|++++.+...
T Consensus       116 ~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~al~~  164 (176)
T COG2716         116 HGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFEALCD  164 (176)
T ss_pred             cCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHHHHHH
Confidence            999998743332222345677898763 345543  346778888765543

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.12  E-value=2.9e-10  Score=98.67  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-CCc
Q 017424          203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPL  281 (372)
Q Consensus       203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~~~  281 (372)
                      ..|.+|+..|.||||++..++++..+.|+||..+|++  ..|+...-+..+.  |    +.+....|++.|...-. +.+
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lis--g----s~dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLIS--G----SWDAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEe--e----CHHHHHHHHHHhhcccccCCe
Confidence            3579999999999999999999999999999999998  8888443333333  3    23567889988865544 566


Q ss_pred             eEEEeecCCCcce--eeeeeEEEEeCCCCchHHHHHHHHHhCCeEEE
Q 017424          282 RVTVVSRGPDTEL--LVANPVELSGKGRPLVFHDITLALKMLDICIF  326 (372)
Q Consensus       282 ~v~i~~~g~~~~~--~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~  326 (372)
                      .+.+.+.++.+..  .....+.|.++|||||+.++|..|..+|+||-
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie  121 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIE  121 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchh
Confidence            7777776664311  22236899999999999999999999999983

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.11  E-value=8e-10  Score=84.10  Aligned_cols=66  Identities=21%  Similarity=0.505  Sum_probs=57.6

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~  274 (372)
                      +-|+|.++||||+|++|+.+|+++|+||.+|++.  |.++.+.|.|++. .+|.++ ++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~--t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIS--TQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEe--cCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            5688999999999999999999999999999998  6677999999997 678887 6777787777764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.03  E-value=3.2e-09  Score=79.29  Aligned_cols=68  Identities=35%  Similarity=0.520  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      .|.|.++|+||+|++++++|+++|++|.++++.+..+ +..++|++.++++...++++++++++.|.++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            6889999999999999999999999999999987654 9999999999876656667888888888764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.85  E-value=3.7e-08  Score=73.46  Aligned_cols=68  Identities=32%  Similarity=0.561  Sum_probs=57.9

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      +.|.|.+.|+||+|++++++|+++|++|.++++.  +.+++..+.|++. .++.+. ++++++.|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            3688999999999999999999999999999987  6666899999997 566663 567888999988754

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=98.76  E-value=1.6e-07  Score=99.70  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=110.9

Q ss_pred             eEEEEEE-CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecC-CCCCCChhHHHHHHHHHHHHhcCCceE
Q 017424          206 TLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD-GKKIVDPSKQNGLSSRLWMELLQPLRV  283 (372)
Q Consensus       206 tvi~v~~-~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~-g~~l~~~~~~~~l~~~L~~~l~~~~~v  283 (372)
                      ..++|.. +|+||+|..++.+|+.++.+|.+|++.  + ++.+...|.|.+. |.+. ++   ..+++.+...+...+.+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~-~~~~~~~~~v~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--A-NGPWSAEFDVRANGPQDF-DP---QEFLQAYKSGVYSELPD  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--c-CCceEEEEEEecCCCCCC-Ch---HHHHHHHHHhhcCCCCc
Confidence            5778888 999999999999999999999999998  6 6778899999854 6654 44   66788888777765532


Q ss_pred             EEeecCCCcceeeeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHH
Q 017424          284 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG  363 (372)
Q Consensus       284 ~i~~~g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~  363 (372)
                      -  ..+|......-+.+||...||||+|+.++++|-    .|-.|.+.+  .|..  .|..||+.  .|  .+|..+...
T Consensus       620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~--~g~~--~~~~~~~~--~~--~~r~~~~~~  685 (693)
T PRK00227        620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST--PGAT--MIVQAALK--PG--FDRATVERD  685 (693)
T ss_pred             c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC--CCcc--eEEEEEec--Cc--ccHHHHHHH
Confidence            2  234444444457899999999999999999999    445555554  4455  89999997  22  358888888


Q ss_pred             HHHHHhc
Q 017424          364 VWKLLMG  370 (372)
Q Consensus       364 vr~~~~~  370 (372)
                      |.+.|.|
T Consensus       686 ~~~~~~~  692 (693)
T PRK00227        686 VTRVLAG  692 (693)
T ss_pred             HHHHHhc
Confidence            8887765

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.72  E-value=1.3e-07  Score=70.97  Aligned_cols=65  Identities=15%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      +-|.|.++|||||++.++.+|..+|+||..|+|.+ +..+.+.|.|+|. .+|+.      -+.|+++|.+++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~t-t~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEE-cCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence            45788999999999999999999999999999985 5567899999997 33433      356667766554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.63  E-value=3.4e-07  Score=70.32  Aligned_cols=66  Identities=21%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      ..+|++.|+||||++++++++|+++|+||.+.+..+. ++++.-.+.|.-+      ++..++++++|.+...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~-~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL-GGRFTLIMLVSIP------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE-TTEEEEEEEEEES------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE-cCeEEEEEEEEeC------cccHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999765 6777777777553      5567888888887533

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.62  E-value=5.7e-07  Score=69.07  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      +.+|++.|+||||++++++++|+++|+||...+..  +.+++..-.+.++.      +++..++|+++|.+...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~------~~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSI------PEDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEE------SHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEe------CcccHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999998  88998777777763      14577889999886643

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.57  E-value=9.4e-07  Score=64.95  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      |.|.|.++||||+|++++++|+++|+||..+.+.+..+ .+...++...+       ....+++.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999988765 34444454444       3445666666665

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.42  E-value=9.3e-07  Score=63.97  Aligned_cols=67  Identities=21%  Similarity=0.292  Sum_probs=56.6

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ++|+|.+||+.||=.++++++.+.|++|..+.++| +|.|..-+|+|.......  +-+|+.|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence            47999999999999999999999999999999955 678999999998744331  34688999888763

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.41  E-value=3.1e-06  Score=62.14  Aligned_cols=64  Identities=23%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      |.|.+.++||||+|++++++|+++|+||.++...  +.+......|.+..     .+....+.+.++|+++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQS--SDKDGVGIVFIVIV-----VDEEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEE--EESSTTEEEEEEEE-----EEGHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEE--ecCCCceEEEEEEE-----CCCCCHHHHHHHHHcc
Confidence            5789999999999999999999999999998887  44442222332221     1345567777777654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.34  E-value=3.7e-06  Score=64.70  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ++|++.|+||||++++|+++|+++|+||.+++.+. .++++.-...+..+      +...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHH
Confidence            68999999999999999999999999999999977 45665443434322      1235677777776

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.34  E-value=2.9e-06  Score=64.84  Aligned_cols=65  Identities=14%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ++++.|+||||++++++++|+++|+||...+-.  +.++...-.|.++.   +  +....+.|++.|....+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~---p--~~~~~~~l~~~l~~l~~   65 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQI---P--DSADSEALLKDLLFKAH   65 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEc---C--CCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999987655  66665555555552   1  11235777777766553

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.33  E-value=5.6e-06  Score=63.72  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=46.9

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHhc
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      +.+|.+.|+||||+++.|++.|+++|+||...+..  ..++    .|+..  .+...    ...+.|++.|...-+
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~--~~~~----~F~m~~~~~~~~----~~~~~l~~~l~~~~~   66 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMA--ILGT----EFALTMLVEGSW----DAIAKLEAALPGLAR   66 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceee--EEcC----EEEEEEEEEecc----ccHHHHHHHHHHHHH
Confidence            36899999999999999999999999999998877  4455    44332  22222    135778887766443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.31  E-value=3.3e-06  Score=64.54  Aligned_cols=64  Identities=22%  Similarity=0.202  Sum_probs=49.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      +++|.|+||||++++++++|+++|+||.+.+..+. ++.+.-.|.+.-+.+     ...+.+++.|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~-~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI-HGRLSLGILVQIPDS-----ADSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE-cCeeEEEEEEEcCCC-----CCHHHHHHHHHHHH
Confidence            47899999999999999999999999999987554 566666677765433     12567777777743

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.29  E-value=2.4e-05  Score=64.09  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEEec----------cCCCCCCceEEEEEEeCCCCcHH
Q 017424           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYRAE----------MQAPKPSDVFLLKLSCYDRKGLL   84 (372)
Q Consensus        22 ~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v~d----------~~~~~~~~~~~i~v~~~DrpGLL   84 (372)
                      +|.|+..+|||-++..+..|...|+||..-.|.-+       ..|.+          +.|-.. ..-++-|...|+||=|
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr-~~dVlaVEmeD~PG~l   83 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVR-ETDVLAVEMEDVPGGL   83 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEE-eeeEEEEEecCCCCcH
Confidence            68899999999999999999999999987666543       22222          112111 1236777889999999


Q ss_pred             HHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           85 YDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        85 ~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      ++|+.+|.++++|+..++.+++...+++-+|.+.|
T Consensus        84 ~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          84 SRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             HHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            99999999999999999999998888876666543

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.06  E-value=1.2e-05  Score=61.05  Aligned_cols=65  Identities=11%  Similarity=0.133  Sum_probs=44.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec--CCCCCCChhHHHHHHHHHHHHh
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA--DGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~--~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      +|++.|+||||++++|+++|+++|+||.+.+..+...+    ..|++..  +..+  .+-..+.|++.|.+..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~----~~f~~~~~~~~~~--~~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS----GRFFMRVEFELEG--FDLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC----CeEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999998776632222    3576642  2111  0013577777776543

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.04  E-value=4.5e-05  Score=57.93  Aligned_cols=65  Identities=25%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcC-CCCCCCHhHHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT-RELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~-~g~~~~~~~~~~l~~~L~~~  140 (372)
                      +|++.|+||||++++|+++|+++|+||.+.+..+..++.   .|++.-. +.+. .+-..+.+++.|+..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~---~f~~~~~~~~~~-~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG---RFFMRVEFELEG-FDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC---eEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence            478999999999999999999999999999986533332   2333211 1110 001256777777763

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.96  E-value=0.016  Score=61.30  Aligned_cols=271  Identities=18%  Similarity=0.169  Sum_probs=150.7

Q ss_pred             EEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEE-------EE-EEEecc--------------CCC-----CCCceEEE
Q 017424           22 VITVN-CPDKTGLGCDLCRIILFFGLSIVRGASV-------VL-YYRAEM--------------QAP-----KPSDVFLL   73 (372)
Q Consensus        22 ~v~v~-~~Dr~GL~~~i~~~l~~~~lnI~~a~i~-------t~-f~v~d~--------------~~~-----~~~~~~~i   73 (372)
                      .+++. .++++|+++++...|.++|.||.--..+       +. |.+.+.              ...     ...+...|
T Consensus       272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~~i~~~~~~a~I  351 (587)
T PRK07431        272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKL  351 (587)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCCcEEEeCCeEEE
Confidence            44444 4789999999999999999999855331       12 555430              011     12467789


Q ss_pred             EEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccccc
Q 017424           74 KLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDV  150 (372)
Q Consensus        74 ~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~~  150 (372)
                      .+.+.   +.+|+++++.++|++.|++|....  ++  +..  +..+.+       ++..++..+.|.+.+.-.....  
T Consensus       352 svvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~--Is~vv~-------~~d~~~av~~Lh~~f~~~~~~~--  416 (587)
T PRK07431        352 SISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVK--VSCVID-------AEDGDKALRAVCEAFELEDSQI--  416 (587)
T ss_pred             EEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCE--EEEEEc-------HHHHHHHHHHHHHHhccCCccc--
Confidence            99985   799999999999999999997544  32  322  222322       2234455556666663321110  


Q ss_pred             ccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEE-ECCcchHHHHHHHHHHhC
Q 017424          151 EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDHKGLLYDIMRTLKDY  229 (372)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~-~~DRpGLL~~i~~~L~~~  229 (372)
                           +.         .|-+. .               ...++--.|  ....+...|++. ..++||+++++...|+++
T Consensus       417 -----~~---------~~~~~-~---------------~~~~~v~gI--a~~~~~~~i~l~~~~~~~g~~a~if~~l~~~  464 (587)
T PRK07431        417 -----EI---------NPTAS-G---------------QDEPEVRGV--ALDRNQAQLAIRNVPDRPGMAASIFGALAEA  464 (587)
T ss_pred             -----cc---------Ccccc-C---------------CCCCcEEEE--EccCCEEEEEECCCCCCccHHHHHHHHHHHc
Confidence                 00         01100 0               000110111  122345666664 458899999999999999


Q ss_pred             CceEEEEEEeeee-cCCeEEEE--EEEecCCCCCCChhHHHHHHHHHHHHhcCCceEEEeecCCCcceeeeeeEEEEeC-
Q 017424          230 NIQVSYGRFSRRQ-RGNCEIDL--FIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGK-  305 (372)
Q Consensus       230 ~~~I~~a~i~~~t-~g~~~~d~--F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~~v~i~~~g~~~~~~~~~~~~v~~~-  305 (372)
                      |++|..  +++.. .++...+-  |.+..     .+-.+..++.+.|...+.. .++.+ ..+       ...+.+.|. 
T Consensus       465 ~i~id~--i~~~~~~~~~~~~~isf~v~~-----~~~~~~~~~l~~l~~~~~~-~~i~~-~~~-------va~VSvVG~g  528 (587)
T PRK07431        465 NISVDM--IVQSQRCRSDGTRDISFTVPK-----EDREAAQKVLRELAKQLPG-AEVED-GPA-------IAKVSIVGAG  528 (587)
T ss_pred             CCeEEE--EEecCCCCCCCceeEEEEEcH-----HHHHHHHHHHHHHHHhcCC-ceEEE-eCC-------eEEEEEECCC
Confidence            999996  54210 12111222  33331     1111222232233322211 11111 111       235788885 


Q ss_pred             --CCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHH
Q 017424          306 --GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL  368 (372)
Q Consensus       306 --DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~  368 (372)
                        .+||++..+..+|.+.|++|....-       .  ++...++.+.+.    .+.++..+-+.+
T Consensus       529 m~~~~gv~~ri~~aL~~~~I~v~~i~~-------S--~~~Is~vV~~~~----~~~av~~Lh~~f  580 (587)
T PRK07431        529 MPGTPGVAARMFRALADAGINIEMIAT-------S--EIRTSCVVAEDD----GVKALQAVHQAF  580 (587)
T ss_pred             ccCCcCHHHHHHHHHHHCCCcEEEeec-------c--ceEEEEEEeHHH----HHHHHHHHHHHh
Confidence              8999999999999999999943331       1  566655534332    223455555544

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.95  E-value=2.6e-05  Score=61.42  Aligned_cols=67  Identities=12%  Similarity=0.072  Sum_probs=46.7

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .++++.|+||||++++|+++|+++|+||...+-.  +.+++..-.+.++  ....  ....+.|++.|.....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f~~~~~v~--~~~~--~~~~~~L~~~l~~l~~   68 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYFTMIMIVD--ISES--NLDFAELQEELEELGK   68 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCccEEEEEEE--eCCC--CCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999999986655  5555333333333  2110  1235778887766543

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.93  E-value=4.3e-05  Score=60.17  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ++|++.|+||||++++|+++|+++|+||.+....+ .++.+.-.+.+.-+. .   ....+.|++.|...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l   66 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-S---NLDFAELQEELEEL   66 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-C---CCCHHHHHHHHHHH
Confidence            57999999999999999999999999999999876 456654445554331 0   11256777777773

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.88  E-value=0.00013  Score=56.17  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=45.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-----CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-----GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-----~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +|++.|+|+||++++|+++|+++|+||.+.+..+...     +.+.-.+.+.-+.+  .   ..+++++.|+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~---~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--T---DLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--C---CHHHHHHHHHH
Confidence            3789999999999999999999999999999977541     33333344433321  1   25677777776

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.82  E-value=0.00014  Score=57.34  Aligned_cols=65  Identities=14%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ++++++.|+||||++++++++|+++|+||....-.  +.++    .|++.  .+....  +...+.|++.|.+.-
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~----~~~~~~~v~~~~~--~~~~~~l~~~l~~l~   69 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDG----YFTMIMLVDISES--KKDFAELKEELEELG   69 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCC----eeEEEEEEEecCC--CCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999985544  5555    55542  222221  112467777776544

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.81  E-value=0.00014  Score=55.96  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ..+-|+|.+.||||+|.+|++++++.|+||.+..+.....++.+.-.|.+.     +.+.++++.|.+.|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L~   70 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHHH
Confidence            357899999999999999999999999999998877311245555556554     346778888887775

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.81  E-value=0.00015  Score=55.70  Aligned_cols=66  Identities=18%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCC--eEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN--CEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~--~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      +|++.|+||||++++|+++|+++|+||.+.+..  +.+.  .....|++.  .+..+   ....+++++.|.+.-
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~--~~~~~~~~~~~~~~~~~v~~p~---~~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTE--TYSAPMSGTPLFKAQATLALPA---GTDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEee--eecCCCCCcceEEEEEEEecCC---CCCHHHHHHHHHHHH
Confidence            478999999999999999999999999987776  5442  233466543  22222   123567777776544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.79  E-value=0.0002  Score=55.17  Aligned_cols=65  Identities=25%  Similarity=0.335  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.+.-.     +.++++.+.+.|++
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence            35799999999999999999999999999999997764 6777666666542     24445555444433

>PRK00194 hypothetical protein; Validated

Probab=97.77  E-value=0.00018  Score=56.74  Aligned_cols=65  Identities=22%  Similarity=0.296  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+++++.|+||||++++++++|+++|+||.+..-.+ .++.+.-.+.+.-+ +...+   .+.+++.|.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~-~~~~~---~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDIS-ESKKD---FAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEec-CCCCC---HHHHHHHHHH
Confidence            578999999999999999999999999999999865 45655444444322 11112   3667776666

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.72  E-value=0.00014  Score=52.78  Aligned_cols=67  Identities=22%  Similarity=0.375  Sum_probs=56.0

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      ++|+|.|+|+.||=.|+++++.+.|++|..+-++  |.|....-+|.|......+  +-+.+.|+++|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  8999999999886433332  34678888888643

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.72  E-value=0.00043  Score=52.14  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=46.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      |.+.+.||||+|++|+.++++.|.||.+....+..++.+.-.|.+.-.     +.++++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            678999999999999999999999999988866555666555665432     24455666666554

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.63  E-value=0.007  Score=49.86  Aligned_cols=101  Identities=20%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccccc
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDV  150 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~~  150 (372)
                      -.|++...++||=|+.++..|.++|+||..-.|.-+ +++-+--..|..       +   +.-.+    +|....     
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt-~dFGIiRmvV~~-------~---d~A~~----~Lee~g-----   63 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADT-GDFGIIRMVVDR-------P---DEAHS----VLEEAG-----   63 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccc-cCcceEEEEcCC-------h---HHHHH----HHHHCC-----
Confidence            368899999999999999999999999999888543 444332233322       1   11112    222110     


Q ss_pred             ccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCC
Q 017424          151 EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN  230 (372)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~  230 (372)
                                              |                  .|.+       .-++-|.-.|+||=|+.|+.+|.+.+
T Consensus        64 ------------------------F------------------~Vr~-------~dVlaVEmeD~PG~l~~I~~vl~d~d   94 (142)
T COG4747          64 ------------------------F------------------TVRE-------TDVLAVEMEDVPGGLSRIAEVLGDAD   94 (142)
T ss_pred             ------------------------c------------------EEEe-------eeEEEEEecCCCCcHHHHHHHHhhcC
Confidence                                    1                  2222       24677888999999999999999999


Q ss_pred             ceEEEEEEee
Q 017424          231 IQVSYGRFSR  240 (372)
Q Consensus       231 ~~I~~a~i~~  240 (372)
                      +|+.+...-+
T Consensus        95 iNldYiYAFv  104 (142)
T COG4747          95 INLDYIYAFV  104 (142)
T ss_pred             cCceeeeeee
Confidence            9999877663

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.52  E-value=0.00096  Score=50.20  Aligned_cols=60  Identities=3%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      |.+.+.||||+|.+|+.++++.|.||.+....  +. .+.+.-.|.+.     +.+.++++.+.++|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~--~~~~~~~~~~~~ve-----v~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLV--EQGRDYTVRDITVD-----APSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEE--EecCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence            67899999999999999999999999976655  33 34444445443     446778888888875

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.48  E-value=0.00072  Score=65.03  Aligned_cols=68  Identities=12%  Similarity=0.119  Sum_probs=49.1

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      .+++|++.|+|||||+++|+++|+++|+||...+..+...++    .|.+.  .+..+  .+...+.|+++|.+.-
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~--~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDG--LIFNLETLRADFAALA   74 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999999998776311454    57654  22212  1223677887776444

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.43  E-value=0.0018  Score=62.31  Aligned_cols=68  Identities=9%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecC-CCCCCChhHHHHHHHHHHHHhc
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD-GKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~-g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .++|+|.|+||||++++|+++|+++|+||...+-.    .....+.|++..+ .-+  .....+.|+++|.+.-.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~----~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~   75 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF----DDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAA   75 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee----ecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999974433    2234456765421 111  11125677777765433

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.41  E-value=0.00022  Score=55.92  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=49.9

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      ..+|+|.|.||||+.+.++++|+++|+||.+-.- |--+|++--.+.|.-+.    .......+++.|.....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQ-tvm~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQ-TVMDGFFTMIMLVDISK----EVVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHH-HHHhhhceeeeEEcCCh----HhccHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999887 55577765455553321    12234667777766544

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.39  E-value=0.00089  Score=50.80  Aligned_cols=58  Identities=16%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      -|+|.+.||+|+|++|+.++++.|+||.+..+.  +. +.    .+++.   .+.+.++++.|..+|+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~-~~----i~l~i---~v~~~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PK-GR----IYLNF---PTIEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cC-Ce----EEEEe---EecCHHHHHHHHHHHh
Confidence            378999999999999999999999999987765  43 22    33332   2335667777777775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.38  E-value=0.00025  Score=55.65  Aligned_cols=76  Identities=14%  Similarity=0.203  Sum_probs=46.8

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-CCceE
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPLRV  283 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~~~~v  283 (372)
                      ..+|+|.|+||||+.+.++++|+++|+||..  |+=.-..+...-.+.+.. + +  ......+++..|.+..+ .++.|
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~-~-~--~~~d~~~lr~~l~~~~~~lgv~V   76 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDI-S-K--EVVDFAALRDELAAEGKKLGVDV   76 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcC-C-h--HhccHHHHHHHHHHHHHhcCcEE
Confidence            5799999999999999999999999999996  541011222222333331 1 1  12234667776665544 23344


Q ss_pred             EEe
Q 017424          284 TVV  286 (372)
Q Consensus       284 ~i~  286 (372)
                      .+.
T Consensus        77 ~vq   79 (90)
T COG3830          77 RVQ   79 (90)
T ss_pred             EEe
Confidence            443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.36  E-value=0.001  Score=64.05  Aligned_cols=68  Identities=21%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ...++|++.|+||||++++|+++|+++|+||.+.+..+. .+|.+.-.+.+.- +..   +...+.|++.|++
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~---~~~~~~L~~~L~~   72 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGL---IFNLETLRADFAA   72 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCC---CCCHHHHHHHHHH
Confidence            356899999999999999999999999999999999651 2444332333322 111   1226778887776

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.34  E-value=0.0015  Score=62.95  Aligned_cols=65  Identities=9%  Similarity=0.106  Sum_probs=44.8

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cC--C-CCCCChhHHHHHHHHHHHHh
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--AD--G-KKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~--g-~~l~~~~~~~~l~~~L~~~l  277 (372)
                      .++|+|.|+|||||++.|+.+|+++|+||....-.    .+...+.|+..  ..  + ..+    ..++|+++|.+.-
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~----~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~   78 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF----DDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVA   78 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc----cccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHH
Confidence            57999999999999999999999999999974432    23334456543  11  1 122    2466777765543

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.33  E-value=0.00034  Score=52.75  Aligned_cols=71  Identities=15%  Similarity=0.280  Sum_probs=55.8

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      -+|++|+-||-.+||++-+|+.+++.|++|.|.....+++...+|.+-  ..++.++.+...+.+.+++.+.+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999998666678888887543  33445655656677777766543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.29  E-value=0.0014  Score=62.76  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=47.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      +|++.|+||||+.+.|+++|+++|+||.+.+.+... ++++.-.+.+.-+ +...   ..+++++.|..++
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~---~~~~l~~~l~~~~   68 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL---EESSLLAAFKSAL   68 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC---CHHHHHHHHHHHH
Confidence            689999999999999999999999999999986542 3555434444322 1112   2467777777633

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.25  E-value=0.0012  Score=47.00  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      +.+..+|+||.|+++++.|.++|+||.+..+....++..+-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999997765577777777754

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.23  E-value=0.0021  Score=47.41  Aligned_cols=62  Identities=6%  Similarity=0.029  Sum_probs=41.1

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC---CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG---NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g---~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      +.|..+|+||+|++|+.+|++.|+||.+....  ...   ......++++.+   +.+.++++.+.++|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~--~~~~~~~~~~~~~~i~v~---~~~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHD--RAFKTLPLGEVEVELTLE---TRGAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEE--eccCCCCCceEEEEEEEE---eCCHHHHHHHHHHHH
Confidence            35788999999999999999999999865443  221   112223334321   224556777777765

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.23  E-value=0.0035  Score=46.13  Aligned_cols=62  Identities=23%  Similarity=0.223  Sum_probs=41.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC----CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~----~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +.|..+|+||+|++|+.+|+++|+||.+.......    .+...-.|.+...     +.+.++.+.+.|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            35778999999999999999999999988765432    3444434444331     23445555555543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.22  E-value=0.0025  Score=61.28  Aligned_cols=67  Identities=21%  Similarity=0.279  Sum_probs=48.3

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      +.+.|+|.|+||||++++++++|+++|+||.+...++.. ++.+.-.+.+..+.+  .   ..+.|+++|.+.
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~--~---~~~~L~~~L~~l   73 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG--L---DEDALRAGFAPI   73 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC--C---CHHHHHHHHHHH
Confidence            467899999999999999999999999999999986433 333333344432222  1   156777777773

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.18  E-value=0.0024  Score=61.45  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS  104 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~  104 (372)
                      ..++|+|.|+|||||.+.|+++|+++|+||.+..-+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            457899999999999999999999999999999986

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.14  E-value=0.0047  Score=45.81  Aligned_cols=48  Identities=19%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC-eEEEEEEEE
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVT  118 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~-~~~DvF~V~  118 (372)
                      +.+.+..+|+||.|+++++.|+++|+||.+.......++ ...-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            568889999999999999999999999998887654322 233345553

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.11  E-value=0.0033  Score=60.27  Aligned_cols=63  Identities=16%  Similarity=0.216  Sum_probs=43.4

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      +|++.|+||||+++.|+..|+++|+||....-.+.    ...+.|++.  .+....  ....+.|++.|.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~----~~~~~F~mr~~v~~~~~--~~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD----PETGRFFMRVEFQLEGF--RLEESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc----CCCCeEEEEEEEEeCCC--CCCHHHHHHHHHH
Confidence            68999999999999999999999999998665522    222366543  222221  1124667777666

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.11  E-value=0.0028  Score=48.02  Aligned_cols=34  Identities=26%  Similarity=0.555  Sum_probs=31.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  105 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T  105 (372)
                      .|.|.+.||+|+|++|+.++++.|+||.+..+.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~   35 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP   35 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence            4789999999999999999999999999999855

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.02  E-value=0.0049  Score=47.26  Aligned_cols=65  Identities=11%  Similarity=0.168  Sum_probs=45.5

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ..+.+...|+||.|++|+++|+..|.||.+-.+.-+.+....-+..+..  |   ++...+++.+.|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999998886444332222222222  2   245567777777663

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.99  E-value=0.007  Score=45.55  Aligned_cols=63  Identities=14%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHh-HHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK-RKEDTYEHLKT  139 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~-~~~~l~~~L~~  139 (372)
                      .+.+.+.|+||+|++|+++|+++|+||......+..++.+.-.|.+...+     .+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-----~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-----MNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-----hHHHHHHHHHHHhc
Confidence            47889999999999999999999999999876443345444445554321     22 44555555544

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.0021  Score=60.23  Aligned_cols=64  Identities=17%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec----CCCCCCChhHHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA----DGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~----~g~~l~~~~~~~~l~~~L~~  275 (372)
                      ..+++.+.|+|+|||++.|+..|.++|+||.++.    ...+...-.|+.+.    ++.+.    ..+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~----qf~D~~~g~FFmR~~f~~~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSD----QFDDPETGRFFMRVEFEGEGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecc----cccccccCeEEEEEEEecCCCcc----cHHHHHHHHHH
Confidence            5689999999999999999999999999999754    34555566787752    34442    34667777765

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.93  E-value=0.0046  Score=57.94  Aligned_cols=68  Identities=19%  Similarity=0.279  Sum_probs=47.4

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +..+++++.|+|++||.+.|++.|+++||||.++.-++.. .|++.---.... .+.+   ...+.+++.+..
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~---~~~~~l~~~f~~   73 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGP---LDREALRAAFAP   73 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCc---ccHHHHHHHHHH
Confidence            4568999999999999999999999999999999997543 344321111111 2221   224667777666

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.92  E-value=0.007  Score=45.22  Aligned_cols=61  Identities=11%  Similarity=0.148  Sum_probs=42.8

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC--CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG--NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g--~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      .|.+.+.||||+|.+++++|+++|+||......  +..  +.+.=.|.+.     ..+.++++++.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~--~~~~~~~~~~~i~~~-----~~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQK--EADGGETAPVVIVTH-----ETSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc--ccCCCCceeEEEEEc-----cCCHHHHHHHHHHHH
Confidence            578899999999999999999999999976554  322  2222222222     225667777777775

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.92  E-value=0.0075  Score=45.07  Aligned_cols=35  Identities=31%  Similarity=0.517  Sum_probs=31.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT  106 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~  106 (372)
                      .|.+.+.|+||+|++++.+|+++|+||.+....+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~   36 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA   36 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence            47889999999999999999999999999887443

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.88  E-value=0.006  Score=47.53  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeE-EEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV-MDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~-~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      .|.+...|+||.|++|++.|+..|+||.+-.+..+.+..+ --++.+.  .|   ++...+++.+.|.+.
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~---d~~~ieqI~kQL~Kl   68 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQ---DDTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CC---CHHHHHHHHHHHhCC
Confidence            6889999999999999999999999999999866544322 2223332  12   245567777777663

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.85  E-value=0.01  Score=43.77  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD  108 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~  108 (372)
                      ..+.|..+|+||.|++++.+|+++|+||.+..+....+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~   39 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE   39 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence            46788999999999999999999999999999876533

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.83  E-value=0.0088  Score=44.98  Aligned_cols=61  Identities=10%  Similarity=0.053  Sum_probs=42.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChh-HHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPS-KQNGLSSRLW  274 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~-~~~~l~~~L~  274 (372)
                      .+.+.+.||||+|++|+++|+++|+||......  +. ++.+.=.|.+.     +.+.+ .++.|.++|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~--~~~~~~~~i~~~v~-----v~~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQN--IPIHGRANVTISID-----TSTMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeC--CCCCCeEEEEEEEE-----cCchHHHHHHHHHHHh
Confidence            378899999999999999999999999974433  32 23333344443     22444 6777877775

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.80  E-value=0.0096  Score=47.59  Aligned_cols=67  Identities=15%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe-EEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~-~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      .....|.+...|+||+|++|++.|+..|.||.+-.+.-+.+.. .--++ +.. +     ++.++++.+.|.+..
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmti-vv~-~-----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWL-LVN-D-----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEE-EEc-C-----chHHHHHHHHHhCCc
Confidence            3456799999999999999999999999999998876554332 21122 222 1     345677777777743

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.79  E-value=0.011  Score=51.69  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      ..+++...|+||.|++|+++|++.|+||.+-.+..+. .+...-+|.|..      ++...+++.+.|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence            3688999999999999999999999999999887664 355544455532      2455677777777743

acetohydroxyacid synthase is a synonym.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.75  E-value=0.012  Score=43.16  Aligned_cols=46  Identities=24%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  117 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V  117 (372)
                      .+.+.++|+||.|++++..|+++++||.+....+..++...-.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            5788999999999999999999999999888754333443323444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.75  E-value=0.0089  Score=43.58  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEE
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV  117 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V  117 (372)
                      +.+.+.|++|++++|+++|+++|+||.+....... ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999986543 3566556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.75  E-value=0.015  Score=42.48  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+.+.+.|+||+|++++.+|+++|++|.+....+. .++.+.-.|.+..     .+ +..+.+.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence            36788999999999999999999999999988654 3444433344432     12 345555555543

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.75  E-value=0.011  Score=52.67  Aligned_cols=65  Identities=14%  Similarity=0.235  Sum_probs=46.6

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      ..+.+.+.|+||+|++|+++|+..|+||.+-.+..+.+ |..  -+.+.-+.    ++...++|.++|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~----~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPG----DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEEC----CHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999865433 322  22222211    1233678888888744

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.72  E-value=0.014  Score=51.27  Aligned_cols=65  Identities=15%  Similarity=0.236  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      ..+++...|+||.|++|+++|+.+|+||.+-.+..+. .+...-+|.|..      ++...+++.+.|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence            4688999999999999999999999999998886654 354444454432      2555777877777743

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.72  E-value=0.0083  Score=46.02  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ..|.+...|+||+|..|+.+|+..|+||.+-.+.  ...+....-+.+...    .+++..+.|..+|.+.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg--~te~~~~sriti~~~----~~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN--ERDTSGVSEMKLTAV----CTENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEec--ccCCCCeeEEEEEEE----CCHHHHHHHHHHHhCCc
Confidence            4688999999999999999999999999974443  222223333333321    24567788888886544

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.71  E-value=0.0092  Score=52.28  Aligned_cols=67  Identities=7%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .++++...|+||.|++|+..|++.|+||.+-.+.  ..++.....+.+..+|    ++...+.|..+|.+.+.
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~--~t~~~~~sriti~V~~----d~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVG--PTEDPDLSRMTIVVVG----DDKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEe--ecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcCcc
Confidence            4688999999999999999999999999975554  3332333334444333    45678888888876554

acetohydroxyacid synthase is a synonym.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.66  E-value=0.02  Score=42.37  Aligned_cols=61  Identities=13%  Similarity=0.100  Sum_probs=41.4

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec--CCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~--g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      +.+.+..+|+||.|.++++.|+++|+||.+....  ..  +....-.|.++       .++..+.+.+.|.+
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~--~~~~~~~~~~~i~v~-------~~~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL--EIREGIGGILRISFK-------TQEDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE--EeecCCcEEEEEEEC-------CHHHHHHHHHHHHH
Confidence            4578889999999999999999999999976544  32  21233344443       12245666666653

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.66  E-value=0.0088  Score=46.62  Aligned_cols=67  Identities=15%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      .+|.+...|+||.|..|+..|+..|+||.+-.+.  ........-+-+..+   ..|++..+++..+|.+.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg--~Te~~~iSRmtivv~---~~d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT--HSEQPGISNMEIQVD---IQDDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEec--ccCCCCceEEEEEEe---CCCHHHHHHHHHHHhCCc
Confidence            3688889999999999999999999999985554  333334444433321   235677788888887554

>PRK08577 hypothetical protein; Provisional

Probab=96.65  E-value=0.017  Score=49.30  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      .....+.|.+.+.||||+|++|+++|+++++||.+........++.+.-.|.+.....    +.+++.+.+.|.
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~  121 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELK  121 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHH
Confidence            4455899999999999999999999999999999765542111333334444442111    135667777764

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.61  E-value=0.015  Score=51.80  Aligned_cols=67  Identities=15%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ..+.+.+.||||+|++|+.+|+.+|+||.+-.+.  .........+.+...|    ++...+.|+++|.+.+.
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~--~t~~~~~sr~TIvv~~----~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVG--PAEQKGISRITMVVPG----DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEee--EcCCCCccEEEEEEEC----CHHHHHHHHHHHHHHhH
Confidence            4789999999999999999999999999985543  3222233344443211    23347888889876665

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.61  E-value=0.018  Score=42.09  Aligned_cols=60  Identities=8%  Similarity=0.120  Sum_probs=41.5

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-C-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-G-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      .+.+.+.|+||+|.+++.+|+++|++|.+....  +. + +.+.-.|.+..     .+ ++.+.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG--PTEDPGISRITIVVEG-----DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee--ecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence            367889999999999999999999999986654  43 2 22222233331     23 56677777765

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.58  E-value=0.028  Score=41.41  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEE
Q 017424           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE   99 (372)
Q Consensus        21 ~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~   99 (372)
                      .+++|..+|+||.+++++..|.++|+||.....+.       .  ..  ...+.+.+.|    ...+.++|.+.|..+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~-------~--~~--~~~~rl~~~~----~~~~~~~L~~~G~~v~   65 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIAD-------T--SE--FGILRLIVSD----PDKAKEALKEAGFAVK   65 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEe-------c--CC--CCEEEEEECC----HHHHHHHHHHCCCEEE
Confidence            36889999999999999999999999999876541       1  11  1455555544    4578889999998764

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.53  E-value=0.029  Score=43.02  Aligned_cols=66  Identities=15%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      +.+.+..+|+||.|+++...|+++|+||.+-...  ... ....=.||++.+|. . +++..+.+-+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~~~~f~vd~~~~-~-~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLWEYVFFIDFEGH-I-EDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCceEEEEEEEECC-C-CCHHHHHHHHHHHH
Confidence            4567778999999999999999999999874322  332 23445677875554 2 23445555555553

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.50  E-value=0.034  Score=42.64  Aligned_cols=49  Identities=22%  Similarity=0.376  Sum_probs=37.2

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      +.+.+..+|+||.|+++...|+++|+||.+-......++...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            3566777999999999999999999999988765544433344566643

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.49  E-value=0.022  Score=43.71  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE-EEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD-LFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D-vF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ..+++...|+||.|++++++|+..|.||.+-.+..+.++...- ++.| . +     +...+.|.+.|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhcC
Confidence            5789999999999999999999999999999987654443322 3333 2 2     33467777777763

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.47  E-value=0.024  Score=41.34  Aligned_cols=45  Identities=24%  Similarity=0.362  Sum_probs=35.0

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEE
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  117 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V  117 (372)
                      +.+...|+||.+++++..|+++|+||.+...... .++.+.-.|.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            5788999999999999999999999999887553 23444333444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.45  E-value=0.014  Score=46.58  Aligned_cols=68  Identities=7%  Similarity=0.079  Sum_probs=48.2

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ...+|.+...|+||+|..|+..|+..|+||.+-.+.  ..+.....-+.+...     +++.++++..+|.+.+.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg--~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KLid   74 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL--PIQDGDKSRIWLLVN-----DDQRLEQMISQIEKLED   74 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe--ecCCCCceEEEEEEc-----CchHHHHHHHHHhCCcC
Confidence            345689999999999999999999999999984443  333333344444321     23577888888875543

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.43  E-value=0.014  Score=42.38  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      ++.+.-+||||-|.+++.+|.++|+||.+....
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~   33 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAF   33 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence            467888999999999999999999999875544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.43  E-value=0.027  Score=37.99  Aligned_cols=47  Identities=40%  Similarity=0.572  Sum_probs=35.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      |.+.++|++|+++++.++|.++|++|.........+.....+++..+
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD   47 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence            46889999999999999999999999999985533233334444443

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK08577 hypothetical protein; Provisional

Probab=96.39  E-value=0.034  Score=47.40  Aligned_cols=67  Identities=21%  Similarity=0.231  Sum_probs=46.4

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +.+.+.+.+.|+||+|++|+++|+++|+||.+....+.. ++.+.-.|.+.-.+.    +..++.+.+.|++
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK  122 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence            478999999999999999999999999999998876654 343433343322111    1234555555544

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.39  E-value=0.021  Score=50.26  Aligned_cols=67  Identities=7%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .++++...|+||.|++|+..|+++|+||.+-.+.  ...+.....+.+..+|    +++..+++..+|.+.+.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~--~te~~~~sriti~V~~----~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVG--PTEDPGLSRMTIVTSG----DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEee--ecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcccc
Confidence            4688999999999999999999999999975554  2222223333333222    45678889988876654

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.38  E-value=0.025  Score=41.32  Aligned_cols=32  Identities=25%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      +.+.+.||||.|.+++++|+++|++|.+....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~   33 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS   33 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence            57789999999999999999999999976554

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.36  E-value=0.019  Score=42.68  Aligned_cols=47  Identities=23%  Similarity=0.437  Sum_probs=37.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEc
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD  119 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~  119 (372)
                      +.+..+|+||.++++++.|+++|+||.+...... .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            4568899999999999999999999998887544 3466665666533

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.36  E-value=0.019  Score=41.65  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEE
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV  117 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V  117 (372)
                      ++.+.-+|+||-|++++++|+++|+||.+...+... .+...=.|.+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            367788999999999999999999999988775433 2444333433

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.30  E-value=0.041  Score=39.02  Aligned_cols=45  Identities=31%  Similarity=0.462  Sum_probs=34.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  117 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V  117 (372)
                      |.+.+.|+||.+.+++..|.+++++|.+..+....++...-.|.+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~   45 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL   45 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence            467899999999999999999999999998865433444333444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK07431 aspartate kinase; Provisional

Probab=96.29  E-value=1.2  Score=47.27  Aligned_cols=160  Identities=18%  Similarity=0.266  Sum_probs=100.3

Q ss_pred             CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEE---EEEec-----------cC----------CCC----
Q 017424           18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASVVL---YYRAE-----------MQ----------APK----   66 (372)
Q Consensus        18 ~~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~t~---f~v~d-----------~~----------~~~----   66 (372)
                      .+...|++.|.   +.+|+.+++.++|.+.|.||....-+..   |.+.+           +.          .|.    
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~  425 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELEDSQIEINPTASGQ  425 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhccCCcccccCccccCC
Confidence            35678899985   8899999999999999999975442111   44432           00          111    


Q ss_pred             ----------CCceEEEEEE-eCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC--CeEEEEEEEEcCCCCCCCHhHHHHH
Q 017424           67 ----------PSDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTPD--GKVMDLFFVTDTRELLHTRKRKEDT  133 (372)
Q Consensus        67 ----------~~~~~~i~v~-~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~--~~~~DvF~V~~~~g~~~~~~~~~~l  133 (372)
                                ..+...|++. .++++|+++++.+.|+++|++|..-......+  |..-=.|.+..        +...+.
T Consensus       426 ~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~--------~~~~~~  497 (587)
T PRK07431        426 DEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK--------EDREAA  497 (587)
T ss_pred             CCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH--------HHHHHH
Confidence                      2344566665 37889999999999999999998664321111  11111244422        222233


Q ss_pred             HHHHHHHHcccccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC
Q 017424          134 YEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ  213 (372)
Q Consensus       134 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~  213 (372)
                      .+.+++ |....                      +                       ...+.++    .+...|.+.|.
T Consensus       498 ~~~l~~-l~~~~----------------------~-----------------------~~~i~~~----~~va~VSvVG~  527 (587)
T PRK07431        498 QKVLRE-LAKQL----------------------P-----------------------GAEVEDG----PAIAKVSIVGA  527 (587)
T ss_pred             HHHHHH-HHHhc----------------------C-----------------------CceEEEe----CCeEEEEEECC
Confidence            222222 22110                      0                       0122222    24678888886


Q ss_pred             ---CcchHHHHHHHHHHhCCceEEE
Q 017424          214 ---DHKGLLYDIMRTLKDYNIQVSY  235 (372)
Q Consensus       214 ---DRpGLL~~i~~~L~~~~~~I~~  235 (372)
                         .+||++.++.++|.+.|++|..
T Consensus       528 gm~~~~gv~~ri~~aL~~~~I~v~~  552 (587)
T PRK07431        528 GMPGTPGVAARMFRALADAGINIEM  552 (587)
T ss_pred             CccCCcCHHHHHHHHHHHCCCcEEE
Confidence               8899999999999999999975

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.28  E-value=0.015  Score=41.19  Aligned_cols=46  Identities=17%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  254 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~  254 (372)
                      +++...|+||.|.+++..|.+.|+||.+..+.. +.++.+.-.|.++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~-~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAE-TRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEE-ccCCcEEEEEEEC
Confidence            457889999999999999999999999877662 2235555555543

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.27  E-value=0.018  Score=45.63  Aligned_cols=66  Identities=15%  Similarity=0.044  Sum_probs=48.2

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC--hhhHHHHHHHHHh
Q 017424          299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWKLLM  369 (372)
Q Consensus       299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~--~~~~~~~vr~~~~  369 (372)
                      .+-+..+++||-|+++-..|++.|+|+.|=+- |... ...|+ |.||+ |-+|. -+  -+++++.+++.|-
T Consensus        16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeS-RP~~-~~~~~-Y~FfV-Dieg~-~~~~~~~~l~~L~~~~~   83 (90)
T cd04931          16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIES-RPSR-LNKDE-YEFFI-NLDKK-SAPALDPIIKSLRNDIG   83 (90)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEe-ccCC-CCCce-EEEEE-EEEcC-CCHHHHHHHHHHHHHhC
Confidence            45555689999999999999999999987665 4333 33566 88999 77775 23  3457788887654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.23  E-value=0.042  Score=40.78  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEE
Q 017424           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEK  100 (372)
Q Consensus        21 ~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~  100 (372)
                      +.+.+..+|+||.++++++.|+++|+||.+....       ...........+.+.+.|.    .++...|.+.|..|..
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~-------~~~~~~~~~v~i~v~~~~~----~~~~~~L~~~G~~v~~   70 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY-------PSKEEDNKILVFRVQTMNP----RPIIEDLRRAGYEVLW   70 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe-------ccCCCCeEEEEEEEecCCH----HHHHHHHHHCCCeeeC
Confidence            5789999999999999999999999999975432       0011112234555555453    3888899999987753

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.22  E-value=0.034  Score=41.66  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=29.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  105 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T  105 (372)
                      +.+.-+|+||-|++++..|+++|.||.+.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            567889999999999999999999999887644

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.21  E-value=0.033  Score=44.19  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .....|.|-+..+|+||-|+++-..|+++|+|+.+  |...... ....=.|||+.+|.  .+ ...+.+.+.|...+.
T Consensus        10 ~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~--IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          10 NKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTH--IESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHhC
Confidence            33445777777799999999999999999999996  6622222 22334788986665  23 345555566655554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.16  E-value=0.018  Score=43.86  Aligned_cols=62  Identities=13%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             EEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHH
Q 017424          302 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL  367 (372)
Q Consensus       302 v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~  367 (372)
                      +.-+|+||-|+++-..|++.|+|+.|=+- |... ...|+ |.||+ |-.|..-.-+++++.+++.
T Consensus         5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeS-RP~~-~~~~~-y~F~i-d~e~~~~~i~~~l~~l~~~   66 (74)
T cd04929           5 FSLKNEVGGLAKALKLFQELGINVVHIES-RKSK-RRSSE-FEIFV-DCECDQRRLDELVQLLKRE   66 (74)
T ss_pred             EEcCCCCcHHHHHHHHHHHCCCCEEEEEe-ccCC-CCCce-EEEEE-EEEcCHHHHHHHHHHHHHh
Confidence            34479999999999999999999977665 4333 33566 88999 7677543334467777664

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.10  E-value=0.045  Score=38.83  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=40.9

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      |.+.+.|+||.+.++...|.+++++|.+....  ..+ +...-.|.+.     +.+....+.+.+.|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~   61 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR--TDDDGLATIRLTLE-----VRDLEHLARIMRKLR   61 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE--ECCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            46789999999999999999999999987665  444 2222233332     123445666666654

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=96.01  E-value=0.07  Score=46.21  Aligned_cols=69  Identities=20%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ......|.+...|+||+|++|.++|+++|+||.........+|.+--.|.+...+ .   ...++.|.+.|++
T Consensus        66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~-~---~~~L~~Li~~L~~  134 (147)
T PRK04435         66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS-M---EGDIDELLEKLRN  134 (147)
T ss_pred             CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC-h---HHHHHHHHHHHHc
Confidence            3567899999999999999999999999999998876443456555456554421 1   1245555555554

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.92  E-value=0.063  Score=39.26  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      .+.+.+.|+||.|+++++.|.+++++|.+....
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~   34 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF   34 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence            477899999999999999999999999976554

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.90  E-value=0.03  Score=40.69  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      +.+.+.|+||+|.+++++|+++|+||.+....
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~   33 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVG   33 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEe
Confidence            56789999999999999999999999986665

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.86  E-value=0.028  Score=42.70  Aligned_cols=62  Identities=10%  Similarity=0.022  Sum_probs=42.8

Q ss_pred             EEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHH
Q 017424          301 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  366 (372)
Q Consensus       301 ~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~  366 (372)
                      -+.-+|+||-|+++-..|++.|+|+.|=+- |... .+.|+ |.||+ |-+|..-.-+++++.+++
T Consensus         4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeS-RP~~-~~~~~-y~Ffv-d~~~~~~~~~~~l~~L~~   65 (74)
T cd04904           4 IFSLKEEVGALARALKLFEEFGVNLTHIES-RPSR-RNGSE-YEFFV-DCEVDRGDLDQLISSLRR   65 (74)
T ss_pred             EEEeCCCCcHHHHHHHHHHHCCCcEEEEEC-CCCC-CCCce-EEEEE-EEEcChHHHHHHHHHHHH
Confidence            344578999999999999999999977654 4332 33455 88999 777743222335555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.85  E-value=0.086  Score=39.74  Aligned_cols=63  Identities=13%  Similarity=0.150  Sum_probs=43.1

Q ss_pred             EEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          209 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       209 ~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      -+.-+|+||-|+++..+|+++|+|+.+  |.+... +....=.||++.+|..  ++...+.+.+.|.+
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~--I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTK--IESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHH
Confidence            345589999999999999999999996  542222 2345567788865642  23455666666654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.83  E-value=0.067  Score=41.04  Aligned_cols=64  Identities=16%  Similarity=0.099  Sum_probs=44.7

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeee-cCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t-~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ..+++...|+||.|..++..|...|+||.+-.+.. | .++...=.+.+ .      ++...+.|..+|.+.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~-t~~~~~sriti~v-~------~~~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ-NTDAQNINIELTV-A------SERPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee-cCCCCEEEEEEEE-C------CCchHHHHHHHHhcCc
Confidence            56899999999999999999999999999855542 2 22211212222 1      3456788888887554

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.80  E-value=0.058  Score=36.24  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=28.8

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      |.+.+.|+||++.+++.+|.+.|++|......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~   32 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQR   32 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeE
Confidence            46889999999999999999999999986654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.80  E-value=0.046  Score=41.24  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=43.6

Q ss_pred             EEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCC--CCChhhHHHHHHHH
Q 017424          301 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL--SVPRNKIEEGVWKL  367 (372)
Q Consensus       301 ~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~--~~~~~~~~~~vr~~  367 (372)
                      -+.-+|+||-|++|..+|+++|+|+.|- -.|...+ ..| -|.||+ |-+|.  +..-+.+++.+++.
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I-~Srp~~~-~~~-~~~f~i-d~~~~~~~~~~~~~l~~l~~~   67 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKI-ESRPSRK-GLW-EYEFFV-DFEGHIDDPDVKEALEELKRV   67 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEE-EeeecCC-CCc-eEEEEE-EEECCCCCHHHHHHHHHHHHh
Confidence            3455799999999999999999999888 4454333 233 378888 66664  22234467777653

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.79  E-value=0.1  Score=38.71  Aligned_cols=48  Identities=21%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEE
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVT  118 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~  118 (372)
                      +.+.+..+|+||.|.+++++|+++|+||.+....-. .++...=+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            467888999999999999999999999998875433 234444445553

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.67  E-value=0.015  Score=42.79  Aligned_cols=44  Identities=14%  Similarity=0.136  Sum_probs=34.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  117 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V  117 (372)
                      +.+.+.|+||+|++++.+|++.|+||......+. ++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~-~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR-GEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC-CCEEEEEEEc
Confidence            5678999999999999999999999988766433 3555444544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.67  E-value=0.051  Score=40.28  Aligned_cols=46  Identities=13%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEE
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  253 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v  253 (372)
                      +-+...|+||.++++++.|+++|+||.+........++.+.-.|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            3468899999999999999999999987655411133444444433

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=95.64  E-value=0.096  Score=45.37  Aligned_cols=71  Identities=10%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             EeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChh-HHHHHHHHHH
Q 017424          197 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPS-KQNGLSSRLW  274 (372)
Q Consensus       197 i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~-~~~~l~~~L~  274 (372)
                      |..........|.+...||||+|++|.++|++.|+||..-...  .. ++.+.-.|-+..     .+.+ .+++|.++|+
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~--i~~~g~a~vs~tVev-----s~~~~~L~~Li~~L~  133 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQS--IPLQGRANVTISIDT-----SSMEGDIDELLEKLR  133 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEE--cCCCCEEEEEEEEEe-----CChHHHHHHHHHHHH
Confidence            3445667789999999999999999999999999999964332  22 333444444432     2332 6777777765

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.64  E-value=0.042  Score=40.47  Aligned_cols=57  Identities=19%  Similarity=0.346  Sum_probs=37.9

Q ss_pred             CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           79 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        79 DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      |+||.|.+|+++|...|.||.+-.+..+.++...-+-.+...+     +...+.|.+.|++.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-----~~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-----DREIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES------CCHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-----chhHHHHHHHHhcc
Confidence            7899999999999999999999999765544443333333322     22356676666653

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.55  E-value=0.018  Score=42.36  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEE
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF  251 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F  251 (372)
                      +-+.+.||||+|.+++.+|++.|+||.+....  +.++.+.-.|
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a~~~~   43 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIGYVVI   43 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEEEEEE
Confidence            34678999999999999999999999875433  4344333333

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK07334 threonine dehydratase; Provisional

Probab=95.53  E-value=0.073  Score=53.72  Aligned_cols=64  Identities=8%  Similarity=0.072  Sum_probs=48.7

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-----CCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-----GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-----g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      .+-|+|.+.||||+|.+|+.+|++.++||.+....  +.     ++.+.-.|.+.     +.+.++++.|...|+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~--~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQ--RLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE--ecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999986655  33     23333334443     4467788888888863

>PRK07334 threonine dehydratase; Provisional

Probab=95.41  E-value=0.12  Score=52.16  Aligned_cols=65  Identities=20%  Similarity=0.219  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee----CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~----~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+.|.|.+.||+|+|++|+.+|++.++||.+....+.    .++.+.-.|.|.-.     +.++++++.+.|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998653    34554333444321     24556666666655

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.28  E-value=0.11  Score=56.30  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=49.5

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec--CCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~--g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ...-|.|.+.||+|||.+|+.+|++.++||....+.  +.  ++.+.-.|.+.     +.+.++++.|...|+
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~--~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~  730 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASR--SDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN  730 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeE--EcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            456899999999999999999999999999987665  43  34444455553     446778888888876

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.20  E-value=0.23  Score=37.09  Aligned_cols=67  Identities=13%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCC-CCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceE
Q 017424           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQA-PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTI   98 (372)
Q Consensus        23 v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~-~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI   98 (372)
                      +.+..+|+||-+++++..|+++|.||.+....       ... ........+.+.+ +-++-+..|...|.+. ..+
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~-------~~~~~~~~~~~~v~v~~-e~~~~~~~i~~~L~~~-~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA-------FEDAPDGMRRVFIRVTP-MDRSKENELIEELKAK-FTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEec-------cccCCCCccEEEEEEEE-ecchHHHHHHHHHhCc-ccE
Confidence            67789999999999999999999999975322       111 1233456677666 5566677888888655 443

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=95.19  E-value=2.5  Score=42.47  Aligned_cols=108  Identities=21%  Similarity=0.309  Sum_probs=66.8

Q ss_pred             eEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424           70 VFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  148 (372)
Q Consensus        70 ~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~  148 (372)
                      ...|++.+ .++||.++++..+|.++|+||.........+|..-=.|.|.        ++..++..+.|.+ +....   
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~-~~~~~---  329 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP--------RDDLEKALELLEE-VKDEI---  329 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc--------HHHHHHHHHHHHH-HHHHc---
Confidence            34566654 67899999999999999999996544222211222234442        2222333333333 11100   


Q ss_pred             ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEE---CCcchHHHHHHHH
Q 017424          149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYDIMRT  225 (372)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~---~DRpGLL~~i~~~  225 (372)
                                         .                       ...|.+.    .+..++++.+   .|+||.++++.++
T Consensus       330 -------------------~-----------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a~i~~~  363 (404)
T PRK06635        330 -------------------G-----------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAAKMFEA  363 (404)
T ss_pred             -------------------C-----------------------cceEEEc----CCeEEEEEECCCCCCCchHHHHHHHH
Confidence                               0                       0123222    2457888876   6899999999999


Q ss_pred             HHhCCceEEE
Q 017424          226 LKDYNIQVSY  235 (372)
Q Consensus       226 L~~~~~~I~~  235 (372)
                      |++.|+||..
T Consensus       364 La~~~Ini~~  373 (404)
T PRK06635        364 LAEEGINIQM  373 (404)
T ss_pred             HHHCCCCEEE
Confidence            9999999986

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.68  E-value=0.27  Score=37.22  Aligned_cols=48  Identities=10%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCC
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADG  257 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g  257 (372)
                      +-+..+|+||-|+++-..|+++|+|+.+  |.+.... ....=.|||+.+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffvd~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEEEEEc
Confidence            4455589999999999999999999995  7622222 2234577888666

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.62  E-value=0.084  Score=38.87  Aligned_cols=58  Identities=12%  Similarity=0.161  Sum_probs=37.7

Q ss_pred             CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          214 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       214 DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      |+||.|..|+.+|...|+||.+-.+.  .......-.+.+..+|.    +...+.|..+|.+.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~--~~~~~~~~riti~v~~~----~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVG--PTEDPGISRITIVVSGD----DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEE--E-SSTTEEEEEEEEES-----CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEee--ecCCCCEEEEEEEEeeC----chhHHHHHHHHhccC
Confidence            78999999999999999999987666  32222333343433332    235677888876544

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.35  E-value=0.11  Score=43.10  Aligned_cols=64  Identities=13%  Similarity=0.033  Sum_probs=44.2

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHH
Q 017424          299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  366 (372)
Q Consensus       299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~  366 (372)
                      .+-+.-+|+||-|+++...|++.|+|+.|=+- |.. +...|+ |.||+ |-.|.+-+-+++++.+++
T Consensus        43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IES-RP~-~~~~~e-Y~FfI-dieg~~~~~~~aL~~L~~  106 (115)
T cd04930          43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLES-RPS-RKEGGD-LEVLV-RCEVHRSDLLQLISSLRQ  106 (115)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEC-CcC-CCCCce-EEEEE-EEEeCHHHHHHHHHHHHH
Confidence            44455589999999999999999999977654 322 234566 88888 666654222335566654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.23  E-value=0.2  Score=45.86  Aligned_cols=54  Identities=13%  Similarity=0.238  Sum_probs=42.4

Q ss_pred             CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424          201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  254 (372)
Q Consensus       201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~  254 (372)
                      ..++...+-+.-.||||.+..|+.+|.++++||...++.....|+.+.-+.-++
T Consensus       144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD  197 (208)
T TIGR00719       144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID  197 (208)
T ss_pred             ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence            445667777888999999999999999999999998887544455555555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.18  E-value=0.048  Score=42.54  Aligned_cols=60  Identities=13%  Similarity=0.195  Sum_probs=41.7

Q ss_pred             EEEEEECC-cchHHHHHHHHHHhCCceEEEEEEeeeecCC-----------eEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          207 LVQIVCQD-HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-----------CEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       207 vi~v~~~D-RpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~-----------~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      +|+|.|+| ++|+++.++++|+++|+||..  |.  ...+           ...-.|.++  |.+.    ..+.++++|.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~--I~--~l~~~~~~~~~~~~~~~~~e~~v~--~~~~----~~~~lr~~L~   70 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR--IR--RLSGRVPLEEQDDSPKACVEFSVR--GQPA----DLEALRAALL   70 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH--HH--HhhccccccccCCCCcEEEEEEEe--CCCC----CHHHHHHHHH
Confidence            47899999 999999999999999999974  44  2222           223344454  3332    3467888876


Q ss_pred             HH
Q 017424          275 ME  276 (372)
Q Consensus       275 ~~  276 (372)
                      +.
T Consensus        71 ~l   72 (84)
T cd04871          71 EL   72 (84)
T ss_pred             HH
Confidence            33

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.15  E-value=0.33  Score=52.45  Aligned_cols=64  Identities=6%  Similarity=0.095  Sum_probs=49.3

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      -.+.|.|.+.||+|+|.+|+.+|++.++||.+....  +.. ..+.-.|.+.     +.+.++++.|...|+
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~--~~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr  689 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE--EKDGRVYSAFIRLT-----ARDRVHLANIMRKIR  689 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE--EcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            456899999999999999999999999999987765  443 3344445443     346678888888876

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=94.14  E-value=0.39  Score=45.93  Aligned_cols=91  Identities=19%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             CCCeEEEEEEE------EEEEEeccC--CCCCC--ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE
Q 017424           44 FGLSIVRGASV------VLYYRAEMQ--APKPS--DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD  113 (372)
Q Consensus        44 ~~lnI~~a~i~------t~f~v~d~~--~~~~~--~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D  113 (372)
                      .||+|+.-.|-      |.|+|.-+.  ...++  ..|.+-+..+|+||-|+++-++|+.+|+|..+-...-+..+...=
T Consensus       158 YgL~il~~~I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y  237 (279)
T COG0077         158 YGLDILAENIEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEY  237 (279)
T ss_pred             cCcHhHhhcccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeE
Confidence            55666655552      227776532  22222  467777888899999999999999999999887765555454455


Q ss_pred             EEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424          114 LFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus       114 vF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +||| |-+|..-+    ..++++|++
T Consensus       238 ~F~i-D~eg~~~~----~~v~~AL~e  258 (279)
T COG0077         238 LFFI-DIEGHIDD----PLVKEALEE  258 (279)
T ss_pred             EEEE-EEecCcCc----HhHHHHHHH
Confidence            6777 44555333    244455544

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.13  E-value=0.28  Score=53.07  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ...|.|.+.||+|||++|+.++++.++||.+..+.+.. ++.+.-.|.|.-.     +.+.++++...|++
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            35889999999999999999999999999999986543 4655444555321     24455666555554

>PRK06291 aspartate kinase; Provisional

Probab=93.89  E-value=4.7  Score=41.53  Aligned_cols=104  Identities=18%  Similarity=0.271  Sum_probs=67.0

Q ss_pred             eEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEE-EEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424           70 VFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDL-FFVTDTRELLHTRKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        70 ~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~Dv-F~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~  145 (372)
                      ...|++.+.   +.+|+++++.++|.++|++|......+  .+  .++ |.|..        +..++..+.|.+.+....
T Consensus       321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se--~sIsf~V~~--------~d~~~av~~L~~~~~~~~  388 (465)
T PRK06291        321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SE--SNISLVVDE--------ADLEKALKALRREFGEGL  388 (465)
T ss_pred             EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CC--ceEEEEEeH--------HHHHHHHHHHHHHHHHhc
Confidence            457888764   789999999999999999998654322  22  222 44422        122233333443332100


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC---CcchHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI  222 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i  222 (372)
                                                                    ...|.+.    .+..+|.+.|.   +++|++.++
T Consensus       389 ----------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~ri  418 (465)
T PRK06291        389 ----------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAGRI  418 (465)
T ss_pred             ----------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcChHHHH
Confidence                                                          0123332    24577888886   799999999


Q ss_pred             HHHHHhCCceEEE
Q 017424          223 MRTLKDYNIQVSY  235 (372)
Q Consensus       223 ~~~L~~~~~~I~~  235 (372)
                      ..+|.+.|+||..
T Consensus       419 f~aL~~~~I~v~~  431 (465)
T PRK06291        419 FSALGESGINIKM  431 (465)
T ss_pred             HHHHHHCCCCEEE
Confidence            9999999999984

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.80  E-value=0.37  Score=52.07  Aligned_cols=65  Identities=12%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+.|.|.+.||+|+|++|+.+++..++||.+....+..++.+.-.|.+.-.     +.++++.|...|++
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            458899999999999999999999999999999866544554444544321     23455566555554

>PRK06635 aspartate kinase; Reviewed

Probab=93.75  E-value=1.9  Score=43.39  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=61.5

Q ss_pred             CeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEE------E-E-EEEec-----------cC---CC-----CCCce
Q 017424           19 DPCVITVNC-PDKTGLGCDLCRIILFFGLSIVRGASV------V-L-YYRAE-----------MQ---AP-----KPSDV   70 (372)
Q Consensus        19 ~~~~v~v~~-~Dr~GL~~~i~~~l~~~~lnI~~a~i~------t-~-f~v~d-----------~~---~~-----~~~~~   70 (372)
                      +...|++.+ .+++|.++++..+|.+.|.||.-...+      . . |.+.+           +.   ..     ...+.
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~i  340 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDI  340 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCe
Confidence            344566554 788999999999999999999865443      1 1 55532           10   11     13456


Q ss_pred             EEEEEEe---CCCCcHHHHHHHHHHhCCceEEEE
Q 017424           71 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKV  101 (372)
Q Consensus        71 ~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A  101 (372)
                      ..+++.+   +++||.++++.++|++.|+||...
T Consensus       341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            6789877   689999999999999999999864

>PRK11899 prephenate dehydratase; Provisional

Probab=93.73  E-value=0.8  Score=43.97  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCCeEEEEEEE------EEEEEeccCC---CCC--CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEE
Q 017424           44 FGLSIVRGASV------VLYYRAEMQA---PKP--SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVM  112 (372)
Q Consensus        44 ~~lnI~~a~i~------t~f~v~d~~~---~~~--~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~  112 (372)
                      .||.|+.-.|-      |.|++.-+..   +.+  ..-+.+-+..+|+||.|+++-++|+.+|+|+.+-.-.-..++...
T Consensus       157 YgL~il~~~IqD~~~N~TRF~vi~~~~~~~~~~~~~~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~  236 (279)
T PRK11899        157 YGLDILAENIEDADHNTTRFVVLSREADWAARGDGPIVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTA  236 (279)
T ss_pred             cCCcchhhcccCCcccceeEEEEecCCCCCCCCCCCceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCce
Confidence            46666666552      2266653221   111  224666666689999999999999999999998776555444334


Q ss_pred             EEEEEEcCCCC
Q 017424          113 DLFFVTDTREL  123 (372)
Q Consensus       113 DvF~V~~~~g~  123 (372)
                      =+||| |-+|.
T Consensus       237 Y~F~i-d~eg~  246 (279)
T PRK11899        237 TQFYA-DIEGH  246 (279)
T ss_pred             EEEEE-EEECC
Confidence            45777 43554

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.71  E-value=0.45  Score=51.32  Aligned_cols=64  Identities=14%  Similarity=0.099  Sum_probs=48.6

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ..+-|.|.+.||+|+|.+|+.+|++.++||.+..+.  +.. +.+.-.|-+     .+.+-+++..|...|.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~--~~~~~~~~~~~~i-----eV~~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTK--TYGKREAILNITV-----EIKNYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeE--EcCCCEEEEEEEE-----EECCHHHHHHHHHHHh
Confidence            466899999999999999999999999999987765  443 333333434     3446678888888775

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PLN02551 aspartokinase

Probab=93.57  E-value=2.4  Score=44.31  Aligned_cols=123  Identities=19%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHH---HHH
Q 017424          203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL---WME  276 (372)
Q Consensus       203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L---~~~  276 (372)
                      .+.++|+|.+.   +.||.+..+...|.++|++|..  |+  +..  ..=.|.++.  ..+..   .+.+++.+   ...
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--Is--sSe--~sIs~~v~~--~~~~~---~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VA--TSE--VSISLTLDP--SKLWS---RELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Ee--ccC--CEEEEEEeh--hHhhh---hhhHHHHHHHHHHH
Confidence            45688899876   6899999999999999999996  54  221  122355542  11211   12222222   223


Q ss_pred             hcCCceEEEeecCCCcceeeeeeEEEEeC--CCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCC
Q 017424          277 LLQPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD  351 (372)
Q Consensus       277 l~~~~~v~i~~~g~~~~~~~~~~~~v~~~--DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~  351 (372)
                      +.....+.+. .+       ...+.+.|.  .+||++..+-.+|.+.|++|..-..+.     -  +++..++.+.+
T Consensus       433 l~~~~~V~v~-~~-------vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga-----S--einIS~vV~~~  494 (521)
T PLN02551        433 LEKIAVVNLL-QG-------RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA-----S--KVNISLIVNDD  494 (521)
T ss_pred             hhcCCeEEEe-CC-------EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC-----C--CcEEEEEEeHH
Confidence            3322222221 11       124555554  689999999999999999996555442     1  55665554433

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.53  E-value=0.42  Score=35.37  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             EEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          209 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       209 ~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      .|.-+||||=|..+.++|.. |.||..-.-.  ..+.....+++.-    .+.+++..+++.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v~v~i----e~~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARVLVGI----QVPDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEEEEEE----EeCCHHHHHHHHHHHHH
Confidence            56779999999999999999 9999874443  2222233333221    22256778888888763

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.28  E-value=0.46  Score=50.90  Aligned_cols=67  Identities=16%  Similarity=0.120  Sum_probs=48.1

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ....+-|.|.+.||+|||.+|+++|++.++||.+....  +..++...+.+ +.   .+.+-.++..|..+|.
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~--~~~~~~~~~~~-~i---~v~n~~~L~~i~~~l~  690 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR--SDKDQFATMQF-TI---EVKNLNHLGRVLARLK  690 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc--ccCCceEEEEE-EE---EECcHHHHHHHHHHHh
Confidence            45677899999999999999999999999999975544  44333333322 21   3446667777777765

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.19  E-value=2  Score=43.16  Aligned_cols=82  Identities=12%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             CeEEEEEE---cCCCCChHHHHHHHHHhCCCeEEEEEEEE----E-EEEec-----------cCC---C-----CCCceE
Q 017424           19 DPCVITVN---CPDKTGLGCDLCRIILFFGLSIVRGASVV----L-YYRAE-----------MQA---P-----KPSDVF   71 (372)
Q Consensus        19 ~~~~v~v~---~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t----~-f~v~d-----------~~~---~-----~~~~~~   71 (372)
                      +...|+|.   .++++|.++++...|.+++.||.--....    . |.+.+           +.+   .     ...+..
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a  338 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLA  338 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeE
Confidence            45678888   47889999999999999999998554411    1 55532           011   1     234667


Q ss_pred             EEEEEeC---CCCcHHHHHHHHHHhCCceEEE
Q 017424           72 LLKLSCY---DRKGLLYDVTAVLCELELTIEK  100 (372)
Q Consensus        72 ~i~v~~~---DrpGLL~~I~~~L~~~glnI~~  100 (372)
                      .|.+.+.   ++||+++++..+|.+.|+||..
T Consensus       339 ~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       339 KVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             EEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            8889884   7899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11899 prephenate dehydratase; Provisional

Probab=93.12  E-value=0.6  Score=44.81  Aligned_cols=53  Identities=11%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCC
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK  259 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~  259 (372)
                      .|.|-+..+|+||.|+++-.+|++.|+|..+  |.....+ ....=.||++.+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCceEEEEEEEECCC
Confidence            5777777789999999999999999999995  7633333 334558899977754

>PRK06291 aspartate kinase; Provisional

Probab=92.96  E-value=3.6  Score=42.35  Aligned_cols=134  Identities=19%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEE-EEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID-LFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d-~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .+.++|++.+.   +.||+++++..+|++.|++|..  ++   .+....+ .|.+..        +..+...+.|...+.
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Is---q~sse~sIsf~V~~--------~d~~~av~~L~~~~~  385 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--IS---QGSSESNISLVVDE--------ADLEKALKALRREFG  385 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EE---ecCCCceEEEEEeH--------HHHHHHHHHHHHHHH
Confidence            34678888875   7899999999999999999985  43   2212222 334432        122333334443332


Q ss_pred             C--CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCC
Q 017424          279 Q--PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL  353 (372)
Q Consensus       279 ~--~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~  353 (372)
                      .  ...+.+. .+       ...+.+.|.   ++||+...+..+|.+.|++|..-..+.     -  +.+..++.+.+. 
T Consensus       386 ~~~~~~i~~~-~~-------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs-----S--e~~Is~vV~~~d-  449 (465)
T PRK06291        386 EGLVRDVTFD-KD-------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS-----S--EVNISFVVDEED-  449 (465)
T ss_pred             HhcCcceEEe-CC-------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc-----c--cCeEEEEEeHHH-
Confidence            1  1111111 00       135777785   799999999999999999996444332     1  345544434322 


Q ss_pred             CCChhhHHHHHHHHH
Q 017424          354 SVPRNKIEEGVWKLL  368 (372)
Q Consensus       354 ~~~~~~~~~~vr~~~  368 (372)
                         .+..+..+...+
T Consensus       450 ---~~~av~~Lh~~f  461 (465)
T PRK06291        450 ---GERAVKVLHDEF  461 (465)
T ss_pred             ---HHHHHHHHHHHh
Confidence               233555555554

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.80  E-value=0.65  Score=50.14  Aligned_cols=65  Identities=22%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.-.     +..++..+...|++
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            458999999999999999999999999999999966544554433444321     23445555555443

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.76  E-value=0.98  Score=33.35  Aligned_cols=60  Identities=13%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             EEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           74 KLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        74 ~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .|.-+||||=|.+++.+++. |.||..-+-.....+. ..++....-.    +++..+++.+.|++
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~-~~v~v~ie~~----~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDE-ARVLVGIQVP----DREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCc-eEEEEEEEeC----CHHHHHHHHHHHHH
Confidence            56779999999999999999 9999987653221122 2333332211    24456666666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.64  E-value=0.59  Score=42.83  Aligned_cols=51  Identities=16%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEE
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  117 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V  117 (372)
                      .+....+-+.-.|+||.+.+|+.+|.++++||...++... .+|.++-+..|
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            3445677777899999999999999999999999999654 35677655555

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK08210 aspartate kinase I; Reviewed

Probab=92.54  E-value=3.3  Score=41.64  Aligned_cols=82  Identities=11%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             CeEEEEEEcCCC-CChHHHHHHHHHhCCCeEEEEEEEEE---EEEec----c--------CC--CCCCceEEEEEEeC--
Q 017424           19 DPCVITVNCPDK-TGLGCDLCRIILFFGLSIVRGASVVL---YYRAE----M--------QA--PKPSDVFLLKLSCY--   78 (372)
Q Consensus        19 ~~~~v~v~~~Dr-~GL~~~i~~~l~~~~lnI~~a~i~t~---f~v~d----~--------~~--~~~~~~~~i~v~~~--   78 (372)
                      +...|+|.+.+. +|.++++...|.++|.||.-...+..   |.+.+    +        .+  ....+...|.|.+.  
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~  349 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTEVVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGM  349 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCceEEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCc
Confidence            456777777555 99999999999999999986533221   44432    0        11  11346678888884  


Q ss_pred             -CCCcHHHHHHHHHHhCCceEEE
Q 017424           79 -DRKGLLYDVTAVLCELELTIEK  100 (372)
Q Consensus        79 -DrpGLL~~I~~~L~~~glnI~~  100 (372)
                       ++||+++++..+|++.|+||..
T Consensus       350 ~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        350 AGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             CCCccHHHHHHHHHHhCCCCEEE
Confidence             7999999999999999999974

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=92.48  E-value=3  Score=41.86  Aligned_cols=104  Identities=25%  Similarity=0.236  Sum_probs=65.0

Q ss_pred             CeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC-
Q 017424          204 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-  279 (372)
Q Consensus       204 ~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~-  279 (372)
                      +...|.|.+   .++||++.++..+|.+.+++|..  ++  +......=.|.+.        .+..+++.+.|...... 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~--~~~s~~~Is~~V~--------~~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--IS--QTPSETSISLTVD--------ETDADEAVRALKDQSGAA  326 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EE--cCCCCceEEEEEe--------HHHHHHHHHHHHHHHHhc
Confidence            467788884   58899999999999999999985  43  2111111134443        12234444444443311 


Q ss_pred             C-ceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEE
Q 017424          280 P-LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS  327 (372)
Q Consensus       280 ~-~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~  327 (372)
                      . ..+.+ .++       ...+.+.|.   ++||++..+..+|.+.|+||..
T Consensus       327 ~~~~i~~-~~~-------~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       327 GLDRVEV-EEG-------LAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CCceEEE-eCC-------eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            1 11111 111       135667774   7899999999999999999974

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK08210 aspartate kinase I; Reviewed

Probab=92.25  E-value=3  Score=42.01  Aligned_cols=100  Identities=20%  Similarity=0.261  Sum_probs=64.4

Q ss_pred             CCeeEEEEEECCc-chHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCc
Q 017424          203 PGHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  281 (372)
Q Consensus       203 ~~~tvi~v~~~DR-pGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~  281 (372)
                      .+-..|+|.+.+. ||.+.+|..+|++.|+||..  ++.  ...  .=.|++.        .+..+++.+.|.+ +.  .
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~--i~~--~~~--~is~~v~--------~~~~~~a~~~l~~-~~--~  331 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDF--INI--FPT--EVVFTVS--------DEDSEKAKEILEN-LG--L  331 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEE--EEe--cCc--eEEEEEc--------HHHHHHHHHHHHH-hC--C
Confidence            3456778877665 99999999999999999996  331  111  1134443        1233444444443 11  1


Q ss_pred             eEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEE
Q 017424          282 RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS  327 (372)
Q Consensus       282 ~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~  327 (372)
                      .+.+ ..+       ...+.+.|.   ++||++..+..+|.+.|++|..
T Consensus       332 ~v~~-~~~-------~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 KPSV-REN-------CAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             cEEE-eCC-------cEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            1221 111       125667775   7999999999999999999975

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.14  E-value=0.5  Score=41.52  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK  110 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~  110 (372)
                      -+.+.+.++||.|.+++++++++|.||..|+.+.-.+|.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~   42 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE   42 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence            477889999999999999999999999999998776663

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.84  E-value=0.098  Score=40.80  Aligned_cols=62  Identities=19%  Similarity=0.147  Sum_probs=42.4

Q ss_pred             EEEEEeCC-CCcHHHHHHHHHHhCCceEEEEEEEee--------CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           72 LLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTT--------PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        72 ~i~v~~~D-rpGLL~~I~~~L~~~glnI~~A~I~T~--------~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +|++.|.| +.|++++++++|+++|+||.+-+-.+.        ......-.|.|..+.   .   ..+.+++.|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~---~---~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP---A---DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC---C---CHHHHHHHHHH
Confidence            47899999 999999999999999999976553210        001334456665322   2   24677777776

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.70  E-value=0.7  Score=40.60  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=37.0

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCC
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG  257 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g  257 (372)
                      -+.+.+.++||.|.+++-.++++|.||.++.-....+|.  ....|...+|
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~--~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE--KALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc--eEEEEEEeeC
Confidence            367889999999999999999999999998876333333  3445655333

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=91.65  E-value=1.4  Score=33.51  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=33.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEE
Q 017424           73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT  118 (372)
Q Consensus        73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~  118 (372)
                      +-+..+|+||-|+++-..|..+|+|+.+-.-....+....=.|||.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id   48 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD   48 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence            3445589999999999999999999998776544333333446664

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=91.51  E-value=15  Score=38.54  Aligned_cols=108  Identities=15%  Similarity=0.279  Sum_probs=66.2

Q ss_pred             ceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424           69 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        69 ~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~  145 (372)
                      +.+.|+|.+.   +.+|.++++...|.++|++|.--.  ++  +.. =.|.+...+   . + ..+.+++.+.+.+.. .
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS--e~s-Is~~v~~~~---~-~-~~~~i~~~l~~l~~e-l  433 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS--EVS-ISLTLDPSK---L-W-SRELIQQELDHLVEE-L  433 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc--CCE-EEEEEehhH---h-h-hhhhHHHHHHHHHHH-h
Confidence            3567888765   689999999999999999998662  32  211 125553321   0 0 122233333332211 0


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC--CcchHHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYDIM  223 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~--DRpGLL~~i~  223 (372)
                                            .    +                  ...|.+.    .+..+|.|.|.  .+||++..+.
T Consensus       434 ----------------------~----~------------------~~~V~v~----~~vAiISvVG~~~~~~gvaariF  465 (521)
T PLN02551        434 ----------------------E----K------------------IAVVNLL----QGRSIISLIGNVQRSSLILEKVF  465 (521)
T ss_pred             ----------------------h----c------------------CCeEEEe----CCEEEEEEEccCCCCccHHHHHH
Confidence                                  0    0                  0123332    24567777764  6899999999


Q ss_pred             HHHHhCCceEEE
Q 017424          224 RTLKDYNIQVSY  235 (372)
Q Consensus       224 ~~L~~~~~~I~~  235 (372)
                      .+|.+.|+||..
T Consensus       466 ~aLa~~gInV~m  477 (521)
T PLN02551        466 RVLRTNGVNVQM  477 (521)
T ss_pred             HHHHHCCCCeEE
Confidence            999999999984

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.17  E-value=0.92  Score=33.39  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             CCeeEEEEEEC----CcchHHHHHHHHHHhCCceEEE
Q 017424          203 PGHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSY  235 (372)
Q Consensus       203 ~~~tvi~v~~~----DRpGLL~~i~~~L~~~~~~I~~  235 (372)
                      .+...|+|.+.    |.||+++.++..|++.|++|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~   40 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM   40 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE
Confidence            35678888888    8999999999999999999996

>PRK06382 threonine dehydratase; Provisional

Probab=91.12  E-value=1.6  Score=44.04  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE----eeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS----TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~----T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ....+.++|.-+|+||-|.+++.+|.++|+||.+....    ....+...-+|.|...     +++..++|.+.|++
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999877653    2233455555666432     23334466666554

>PRK09034 aspartate kinase; Reviewed

Probab=90.59  E-value=15  Score=37.65  Aligned_cols=32  Identities=19%  Similarity=0.384  Sum_probs=27.6

Q ss_pred             CeeEEEEEEC---CcchHHHHHHHHHHhCCceEEE
Q 017424          204 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSY  235 (372)
Q Consensus       204 ~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~  235 (372)
                      +..+|.+.|.   ++||++.++..+|.+.|+||..
T Consensus       384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~m  418 (454)
T PRK09034        384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQM  418 (454)
T ss_pred             CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence            4577888654   7899999999999999999985

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.62  E-value=1  Score=45.69  Aligned_cols=49  Identities=12%  Similarity=0.215  Sum_probs=40.2

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  254 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~  254 (372)
                      ....|-+.-.|+||.+..|+.+|+++|+||..-+..  +.|+.+.-+|-++
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A~~iie~D  385 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIGYVVIDVD  385 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEEEEEEEeC
Confidence            456677789999999999999999999999886776  7777666666554

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=89.58  E-value=1.8  Score=46.48  Aligned_cols=43  Identities=26%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD  113 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D  113 (372)
                      .+.|.|.+.||+|||.+|+++|+..+.||.+....+. ++....
T Consensus       627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~  669 (701)
T COG0317         627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFAT  669 (701)
T ss_pred             EEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEE
Confidence            4689999999999999999999999999999998665 344333

>PRK09181 aspartate kinase; Validated

Probab=89.56  E-value=15  Score=38.01  Aligned_cols=102  Identities=17%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             ceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424           69 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        69 ~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~  145 (372)
                      +.+.|+|.+.   +.+|+++++.++|.++|++|.  .+.+...   --.|.|.+.      ..+.+++.+.|++.+..  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~---sis~~v~~~------~~~~~~~~~~L~~~~~~--  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN---TITHYLWGS------LKTLKRVIAELEKRYPN--  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc---EEEEEEcCC------hHHHHHHHHHHHHhcCC--
Confidence            4556777554   789999999999999999998  3333221   123555331      11223333333321110  


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECC--cchHHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD--HKGLLYDIM  223 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~D--RpGLL~~i~  223 (372)
                                                                     ..|..     .+..+|.+.|..  +||+...+.
T Consensus       395 -----------------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~f  422 (475)
T PRK09181        395 -----------------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKAV  422 (475)
T ss_pred             -----------------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHHH
Confidence                                                           01211     245677777754  899999999


Q ss_pred             HHHHhCCceEEE
Q 017424          224 RTLKDYNIQVSY  235 (372)
Q Consensus       224 ~~L~~~~~~I~~  235 (372)
                      .+|.+.|+||..
T Consensus       423 ~aL~~~~Ini~~  434 (475)
T PRK09181        423 QALAEAGINVLA  434 (475)
T ss_pred             HHHHHCCCCeEE
Confidence            999999999984

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.43  E-value=2.5  Score=32.75  Aligned_cols=61  Identities=7%  Similarity=0.032  Sum_probs=37.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCC-hhHHHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD-PSKQNGLSSRLWM  275 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~-~~~~~~l~~~L~~  275 (372)
                      ++.+.-+||||=|..++.+|.  +.||....-.. ...+.+.-.+.+..     .+ ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~-----~~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSV-----ANGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEe-----CCcHHHHHHHHHHHHH
Confidence            577888999999999999999  55555333321 11123333333442     24 5677788877753

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=89.27  E-value=19  Score=36.91  Aligned_cols=107  Identities=22%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      .+.+.|.|.+.   +.+|.+.+|...|.++|+||..  |.  +.-....=.|++..        .......+.|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~--q~~~~~~i~~~v~~--------~~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--IT--QSISEVSISFTVPE--------SDAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EE--eccCCCeEEEEEch--------hhHHHHHHHHHHHHhh
Confidence            56788888876   3459999999999999999985  54  22222223455531        1222233333333332


Q ss_pred             Cc-eEEEeecCCCcceeeeeeEEEEe---CCCCchHHHHHHHHHhCCeEEEEEE
Q 017424          280 PL-RVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAE  329 (372)
Q Consensus       280 ~~-~v~i~~~g~~~~~~~~~~~~v~~---~DRpgll~dvt~~L~~~~~~V~~a~  329 (372)
                      .. .+.+. .+       ...+.+.|   +..||+..-+..+|.+.|+||....
T Consensus       373 ~~~~v~~~-~~-------~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         373 LLAEVEVE-EG-------LALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             hcceEEee-CC-------eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence            21 12211 11       12566777   4789999999999999999996555

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.90  E-value=0.9  Score=45.99  Aligned_cols=48  Identities=17%  Similarity=0.111  Sum_probs=40.2

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  117 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V  117 (372)
                      ....|.+.-.|+||.++.|+.+|+++|+||...+.++ .++.++-+|.+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEe
Confidence            4567888999999999999999999999999999855 45778655544

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=88.88  E-value=4.6  Score=31.21  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=24.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKI  103 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I  103 (372)
                      ++.|.-+||||=|++++.+|+  +.||....-
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y   32 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY   32 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence            567788999999999999999  666664433

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=88.78  E-value=2.7  Score=34.78  Aligned_cols=49  Identities=14%  Similarity=0.012  Sum_probs=35.3

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEE
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT  118 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~  118 (372)
                      -+.+-+..+|+||-|+++-..|+.+|+|+.+-......+....=.|+|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId   89 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR   89 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE
Confidence            4566666699999999999999999999998775443323222235553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=88.58  E-value=7.4  Score=43.06  Aligned_cols=112  Identities=16%  Similarity=0.226  Sum_probs=67.9

Q ss_pred             CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEE-EEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID-LFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d-~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .+.++|+|.+.   ++||++.++..+|.+.|++|..  ++   .+....+ .|.+..  ..+  ....+.|.+.+...+.
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~m--Is---qssSe~sIsf~V~~--~d~--~~av~~L~~~f~~el~  383 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVL--IT---QSSSEYSISFCVPQ--SDA--AKAKRALEEEFALELK  383 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEE--EE---cCCCCceEEEEEeH--HHH--HHHHHHHHHHHHHHhc
Confidence            46788999875   6899999999999999999985  33   1211122 344432  010  1112333333322222


Q ss_pred             C-Cc-eEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424          279 Q-PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  331 (372)
Q Consensus       279 ~-~~-~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i~  331 (372)
                      . .. .+.+. .+       ...+.+.|.   ++||+...+..+|.+.|++|..-..+
T Consensus       384 ~~~~~~i~~~-~~-------valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg  433 (819)
T PRK09436        384 EGLLEPLEVE-EN-------LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG  433 (819)
T ss_pred             cCCcceEEEe-CC-------EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence            1 11 12211 11       135777775   78999999999999999999655443

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=87.96  E-value=2  Score=37.72  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      -.+.+.-.|.||.|+++++.|+..|+||.+-.+.-+.+...-=+-.|+..     ++...+++.+.|.+..+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence            46777889999999999999999999999998866554432222222221     23456778777777543

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=87.94  E-value=3.2  Score=39.73  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=47.6

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      ..|.|-+..+|+||-|+++-.+|+.+|+|..+  |.+...+ ....=.|||+.+|..= +    ..++++|.+.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTk--IESRP~k~~~~~Y~F~iD~eg~~~-~----~~v~~AL~el  259 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTK--IESRPLKTGLGEYLFFIDIEGHID-D----PLVKEALEEL  259 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceee--EeecccCCCCeeEEEEEEEecCcC-c----HhHHHHHHHH
Confidence            57888888889999999999999999999994  6632222 3356688998766652 2    3455555433

>PRK09181 aspartate kinase; Validated

Probab=87.72  E-value=32  Score=35.59  Aligned_cols=106  Identities=14%  Similarity=0.078  Sum_probs=68.4

Q ss_pred             CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      .+.+.|+|.+.   +.+|++.++..+|.+.+++|..  +.  +. . ..-.|.+..+      ..+.+++.+.|...+..
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~--ss-~-~sis~~v~~~------~~~~~~~~~~L~~~~~~  394 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KA--TN-A-NTITHYLWGS------LKTLKRVIAELEKRYPN  394 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EE--ec-C-cEEEEEEcCC------hHHHHHHHHHHHHhcCC
Confidence            35778888755   7899999999999999999984  54  21 1 2223444321      12345555555544431


Q ss_pred             CceEEEeecCCCcceeeeeeEEEEeCC--CCchHHHHHHHHHhCCeEEEEEEE
Q 017424          280 PLRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEI  330 (372)
Q Consensus       280 ~~~v~i~~~g~~~~~~~~~~~~v~~~D--Rpgll~dvt~~L~~~~~~V~~a~i  330 (372)
                       ..+.  ..+.       ..+.+.|.+  +||+...+..+|.+.|+||..-.-
T Consensus       395 -~~i~--~~~~-------a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        395 -AEVT--VRKV-------AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             -ceEE--ECCc-------eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence             1222  1221       256677754  899999999999999999954333

>PRK06382 threonine dehydratase; Provisional

Probab=87.67  E-value=3.3  Score=41.86  Aligned_cols=69  Identities=10%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEee---eecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR---RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~---~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      +...+.++|.-+||||-|.++++.|.++|+||.+-....   ....+...=.|.++.  .   +++..+.|.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet--~---~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV--R---GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe--C---CHHHHHHHHHHHHH
Confidence            445788999999999999999999999999998643310   011122333344431  1   34555677777753

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=87.34  E-value=4.4  Score=40.77  Aligned_cols=53  Identities=15%  Similarity=0.212  Sum_probs=39.3

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCC
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL  123 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~  123 (372)
                      -+.+-+..+|+||.|+++-+.|+..|+|+.+-.-.-..++...=+|||. -+|.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid-~eg~  349 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLD-VQAN  349 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEE-EeCC
Confidence            4555566689999999999999999999998776544444344457774 3554

>TIGR00657 asp_kinases aspartate kinase

Probab=87.33  E-value=17  Score=37.10  Aligned_cols=84  Identities=11%  Similarity=0.105  Sum_probs=61.1

Q ss_pred             CeEEEEEEcCCC--CChHHHHHHHHHhCCCeEEEEEEEE----E-EEEecc--------------CC-----CCCCceEE
Q 017424           19 DPCVITVNCPDK--TGLGCDLCRIILFFGLSIVRGASVV----L-YYRAEM--------------QA-----PKPSDVFL   72 (372)
Q Consensus        19 ~~~~v~v~~~Dr--~GL~~~i~~~l~~~~lnI~~a~i~t----~-f~v~d~--------------~~-----~~~~~~~~   72 (372)
                      +...|+|.+.+-  +|.++++.+.|.++|++|.-....+    . |.+.+.              ..     ....+...
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~  380 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAK  380 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEE
Confidence            556777777443  6999999999999999997654322    1 444320              01     12346778


Q ss_pred             EEEEe---CCCCcHHHHHHHHHHhCCceEEEEE
Q 017424           73 LKLSC---YDRKGLLYDVTAVLCELELTIEKVK  102 (372)
Q Consensus        73 i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~  102 (372)
                      |++.+   .++||+++++.++|++.|+||....
T Consensus       381 VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       381 VSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             EEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            99976   4789999999999999999997654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.84  E-value=5.7  Score=39.56  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=45.0

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE---ee-CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS---TT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~---T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      +.....+.|.-+||||.|++++..++++|.||.+-.-.   .. ..+.+.-.+.+...     +++..+.|.+.|++
T Consensus       302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD  373 (380)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            34456899999999999999999999999999987542   11 23444333444221     13445566666554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09084 aspartate kinase III; Validated

Probab=86.78  E-value=16  Score=37.44  Aligned_cols=106  Identities=21%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      .+-++|+|.+.   +.+|.+.++..+|.+.|++|..  |+  +. + ..=.|.+..+  .. .......+.+.+.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~--ss-e-~sIs~~i~~~--~~-~~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--IT--TS-E-VSVSLTLDTT--GS-TSTGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Ee--cc-C-cEEEEEEech--hh-hhhhhHHHHHHHHHHHhc
Confidence            45678899865   6899999999999999999995  54  21 1 2224455421  11 011112233344444443


Q ss_pred             CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEE
Q 017424          280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI  325 (372)
Q Consensus       280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V  325 (372)
                      ...+.+. .+       ...+.+.|.   ++||+...+..+|.+.++.+
T Consensus       375 ~~~i~~~-~~-------va~IsvvG~gm~~~~gv~arif~aL~~~nI~~  415 (448)
T PRK09084        375 LCRVEVE-EG-------LALVALIGNNLSKACGVAKRVFGVLEPFNIRM  415 (448)
T ss_pred             CCeEEEE-CC-------eEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence            2222221 11       135778886   79999999999998865544

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.54  E-value=1.2  Score=41.76  Aligned_cols=38  Identities=13%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  105 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T  105 (372)
                      ...-+|.+.-.|.||.+++|+++|+..|.||.+--+--
T Consensus        75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            34568888999999999999999999999999988843

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.53  E-value=3.7  Score=40.91  Aligned_cols=75  Identities=19%  Similarity=0.154  Sum_probs=54.6

Q ss_pred             eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEE
Q 017424           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE   99 (372)
Q Consensus        20 ~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~   99 (372)
                      ...+.|.-+|+||.|++++..++++|.||++-.....    .+..+.......+.+.+.| +.-+.+|...|.+.|.++.
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~----~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~~G~~v~  379 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRL----SKEIPPGFAMVEITLETRG-KEHLDEILKILRDMGYNFY  379 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeecc----ccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHHcCCccc
Confidence            3488999999999999999999999999997432100    0011122234566667777 7778899999999998763

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=86.50  E-value=4.2  Score=40.86  Aligned_cols=54  Identities=17%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCC
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKK  259 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~  259 (372)
                      ..|.+-+..+|+||.|+++-..|+..|+|..+  |.+... +....=.||++.+|..
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~~Y~Ffid~eg~~  350 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPWEEMFYLDVQANL  350 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCceEEEEEEEeCCC
Confidence            35666677789999999999999999999995  763322 2335557899877754

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=86.42  E-value=1.2  Score=46.52  Aligned_cols=64  Identities=14%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHH
Q 017424          203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLS  270 (372)
Q Consensus       203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~  270 (372)
                      ++++++=+.-.||||.+..|+..|.++++||...++.....|+.+.-.+.++.   ++ +++-+++|+
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~---~v-~~~~l~~i~  512 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ---PV-PDEVLEEIK  512 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC---CC-CHHHHHHHh
Confidence            44555566679999999999999999999999877764444555554454432   44 344444444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.17  E-value=1.8  Score=45.36  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=37.6

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEE
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  253 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v  253 (372)
                      .+.++.+=+...|+||.+..++..|.+.++||...++.....|+.+.-++-+
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            3455555667799999999999999999999998777632234444444444

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=85.73  E-value=17  Score=40.34  Aligned_cols=86  Identities=10%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEE-----EEEec-----------cCC----C--------C
Q 017424           18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASVVL-----YYRAE-----------MQA----P--------K   66 (372)
Q Consensus        18 ~~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-----f~v~d-----------~~~----~--------~   66 (372)
                      .+...|+|.+.   +++|+.+++...|.++|.||.-....+.     |.+.+           +.|    .        .
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~  392 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEV  392 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEE
Confidence            35677888764   7899999999999999999965443221     55542           011    1        1


Q ss_pred             CCceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424           67 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI  103 (372)
Q Consensus        67 ~~~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I  103 (372)
                      ..+...|.+.|.   ++||+++++..+|.+.|+||..-..
T Consensus       393 ~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        393 EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence            246778999985   7899999999999999999986654

>PRK11898 prephenate dehydratase; Provisional

Probab=85.59  E-value=10  Score=36.46  Aligned_cols=80  Identities=16%  Similarity=0.246  Sum_probs=47.2

Q ss_pred             hCCCeEEEEEEE------EEEEEeccCC-----CCCCceEEEEEEeC-CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe
Q 017424           43 FFGLSIVRGASV------VLYYRAEMQA-----PKPSDVFLLKLSCY-DRKGLLYDVTAVLCELELTIEKVKISTTPDGK  110 (372)
Q Consensus        43 ~~~lnI~~a~i~------t~f~v~d~~~-----~~~~~~~~i~v~~~-DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~  110 (372)
                      ..||.|+.-.|-      |.|++.-+..     +....-+.+-+.-+ |+||-|+++-+.|+++|+|+.+-...-..+..
T Consensus       158 ~ygL~il~~~I~d~~~N~TRF~vi~~~~~~~~~~~~~~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~  237 (283)
T PRK11898        158 LYGLEILAEDIQDYPNNRTRFWLLGRKKPPPPLRTGGDKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGL  237 (283)
T ss_pred             HcCCcEehhcCCCCCccceEEEEEEcCcccCCCCCCCCeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCC
Confidence            346666665553      2266653221     11223344555554 46999999999999999999987754333332


Q ss_pred             EEEEEEEEcCCCC
Q 017424          111 VMDLFFVTDTREL  123 (372)
Q Consensus       111 ~~DvF~V~~~~g~  123 (372)
                      ..=.|||. -+|.
T Consensus       238 ~~y~F~vd-~eg~  249 (283)
T PRK11898        238 GTYFFFID-VEGH  249 (283)
T ss_pred             ccEEEEEE-EEcc
Confidence            22346663 3454

>PRK09034 aspartate kinase; Reviewed

Probab=85.48  E-value=11  Score=38.71  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=66.7

Q ss_pred             CCeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          203 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       203 ~~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      .+-+.|++.+   .++||+++++..+|+++|++|..  ++  + +. ..=.|++..  ..+ +...+..+.+.|...+. 
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~--s-s~-~sis~~v~~--~~~-~~a~~~~l~~el~~~~~-  375 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MP--S-GI-DDLSIIIRE--RQL-TPKKEDEILAEIKQELN-  375 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--Ec--C-CC-cEEEEEEeH--HHh-hHHHHHHHHHHHHHhhC-
Confidence            3457888875   67899999999999999999996  33  1 11 222455542  011 11111334444433322 


Q ss_pred             CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEE
Q 017424          280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI  330 (372)
Q Consensus       280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i  330 (372)
                      ...+.+. .+       ...+.+.|.   ++||++..+..+|.+.|++|..-..
T Consensus       376 ~~~I~~~-~~-------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        376 PDELEIE-HD-------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             CceEEEe-CC-------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            1111111 11       135777664   7899999999999999999965543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=85.11  E-value=1  Score=33.15  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             CceEEEEEEeC----CCCcHHHHHHHHHHhCCceEEEEE
Q 017424           68 SDVFLLKLSCY----DRKGLLYDVTAVLCELELTIEKVK  102 (372)
Q Consensus        68 ~~~~~i~v~~~----DrpGLL~~I~~~L~~~glnI~~A~  102 (372)
                      .+...|+|.++    |.||+++++++.|++.|+||....
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            34567888887    799999999999999999998655

>PRK08198 threonine dehydratase; Provisional

Probab=84.93  E-value=9  Score=38.54  Aligned_cols=38  Identities=21%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS  104 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~  104 (372)
                      ......+.|.-+|+||-|+++...++++|.||.+-...
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            34567899999999999999999999999999988764

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=84.63  E-value=10  Score=27.35  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             EEEE-eCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424           73 LKLS-CYDRKGLLYDVTAVLCELELTIEKVKI  103 (372)
Q Consensus        73 i~v~-~~DrpGLL~~I~~~L~~~glnI~~A~I  103 (372)
                      |++. .+|+||.++++.+.|++.|++|.....
T Consensus         4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            4444 379999999999999999999985544

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK08198 threonine dehydratase; Provisional

Probab=83.79  E-value=8  Score=38.90  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCce
Q 017424           18 GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELT   97 (372)
Q Consensus        18 ~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~gln   97 (372)
                      +....+.|.-+|+||-|++++..++..|.||.+-.....    ....+.......|.+.+.|.. -+.++...|.+.|+.
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~----~~~~~~~~~~v~v~ie~~~~~-~~~~l~~~L~~~G~~  399 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRF----SPDLRLGEVEVELTLETRGPE-HIEEILDALRDAGYE  399 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEc----cCCCCCceEEEEEEEEeCCHH-HHHHHHHHHHHCCCe
Confidence            344689999999999999999999999999998543310    000111123345666665443 678899999999998


Q ss_pred             EEE
Q 017424           98 IEK  100 (372)
Q Consensus        98 I~~  100 (372)
                      +..
T Consensus       400 v~~  402 (404)
T PRK08198        400 VKV  402 (404)
T ss_pred             EEE
Confidence            763

>PRK06545 prephenate dehydrogenase; Validated

Probab=83.78  E-value=1.7  Score=43.03  Aligned_cols=39  Identities=28%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT  106 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~  106 (372)
                      +..+.+.|.-+||||-+++++..|.+.|+||.+-+|.-.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~  326 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEA  326 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeec
Confidence            467899999999999999999999999999999999544

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.75  E-value=5.1  Score=40.74  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=39.5

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      ..+.|.+...|+||.|++|++.|.++++||.+...... ++....++.+++
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~  396 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTH  396 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEE
Confidence            45789999999999999999999999999998766433 233445667765

>TIGR00657 asp_kinases aspartate kinase

Probab=83.59  E-value=31  Score=35.15  Aligned_cols=107  Identities=22%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             CCeeEEEEEECCc--chHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-C
Q 017424          203 PGHTLVQIVCQDH--KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-Q  279 (372)
Q Consensus       203 ~~~tvi~v~~~DR--pGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~  279 (372)
                      .+...|+|.+.+-  +|++.++..+|.++|++|..  +...+ .+ ..=.|.+..        +..+...+.|..... .
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~--i~q~~-se-~sIs~~I~~--------~~~~~a~~~L~~~~~~~  367 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDL--ITQSS-SE-TSISFTVDK--------EDADQAKTLLKSELNLS  367 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecC-CC-ceEEEEEEH--------HHHHHHHHHHHHHHHhc
Confidence            3567788876543  79999999999999999985  32111 11 111333432        122223333322221 1


Q ss_pred             Cc-eEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEE
Q 017424          280 PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  329 (372)
Q Consensus       280 ~~-~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~  329 (372)
                      .. .+.+ ..+       ...+.+.|.   ++||++.++..+|++.|++|..-.
T Consensus       368 ~~~~I~~-~~~-------~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       368 ALSSVEV-EKG-------LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CcceEEE-cCC-------eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            11 1111 111       135777664   789999999999999999995443

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK12483 threonine dehydratase; Reviewed

Probab=83.55  E-value=30  Score=36.24  Aligned_cols=146  Identities=12%  Similarity=0.083  Sum_probs=85.7

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHH-HHHHHHHHHHhcCC
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQ-NGLSSRLWMELLQP  280 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~-~~l~~~L~~~l~~~  280 (372)
                      +.....+.|.-+||||-|.+++++|...  ||.+..-.  ..+.+...++..-    .+.+++.. ++|.++|.+   .+
T Consensus       342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~--~~~~~~~~v~v~i----e~~~~~~~~~~i~~~l~~---~g  410 (521)
T PRK12483        342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYR--YADAREAHLFVGV----QTHPRHDPRAQLLASLRA---QG  410 (521)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEE--ecCCCeeEEEEEE----EeCChhhhHHHHHHHHHH---CC
Confidence            4466788999999999999999999988  77653333  2233334444321    12244454 677777753   22


Q ss_pred             ceEEEeec-------------CCCcceeeeeeEEEEeCCCCchHHHHHHHHHh-CCeEEEEEEEeeeccCceeeeEEEEE
Q 017424          281 LRVTVVSR-------------GPDTELLVANPVELSGKGRPLVFHDITLALKM-LDICIFSAEIGRHMIGDREWEVYRVL  346 (372)
Q Consensus       281 ~~v~i~~~-------------g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~-~~~~V~~a~i~~~~~~~~~~~~~~f~  346 (372)
                      ..+...+.             |-.+.......+.+.=++|||=|.....+|-. .+++-||=...    |+.  .-|.|+
T Consensus       411 ~~~~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~----~~~--~a~v~v  484 (521)
T PRK12483        411 FPVLDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH----GAA--DGRVLA  484 (521)
T ss_pred             CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC----CCC--ceEEEE
Confidence            32222111             11111122346778889999999999999987 58888775442    122  346665


Q ss_pred             EeCCCCCCCChhhHHHHHHH
Q 017424          347 LDEGDGLSVPRNKIEEGVWK  366 (372)
Q Consensus       347 ~~~~~g~~~~~~~~~~~vr~  366 (372)
                      =.+..+  =+++++.+.++.
T Consensus       485 gi~~~~--~~~~~~~~~l~~  502 (521)
T PRK12483        485 GLQVPE--DERAALDAALAA  502 (521)
T ss_pred             EEeeCh--hHHHHHHHHHHH
Confidence            444422  114445555543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=82.62  E-value=3.6  Score=41.17  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             ceEEEEEEeC-CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEE
Q 017424           69 DVFLLKLSCY-DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT  118 (372)
Q Consensus        69 ~~~~i~v~~~-DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~  118 (372)
                      ..+.+.+.-+ |+||-|++|..+|+.+|+||.+-.+ .....+-.- |+|.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~-f~i~  342 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELH-FRIG  342 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEE-EEEE
Confidence            4667777776 9999999999999999999999988 333344333 7764

>PRK06349 homoserine dehydrogenase; Provisional

Probab=81.84  E-value=6  Score=40.28  Aligned_cols=66  Identities=11%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ...+.|.+...|+||.|.+|+..|.+++++|.+-.-.  ...+....+++++.   +. ++.+++++.+.|.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~--~~~~~~~~ivivT~---~~-~e~~l~~~i~~L~  411 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQK--GAGGEGAEIVIVTH---ET-SEAALRAALAAIE  411 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec--cCCCCceeEEEEEE---eC-CHHHHHHHHHHHh
Confidence            3457899999999999999999999999999964332  21223344555552   22 2344455555543

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=81.68  E-value=8.3  Score=26.51  Aligned_cols=27  Identities=15%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             eCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424           77 CYDRKGLLYDVTAVLCELELTIEKVKI  103 (372)
Q Consensus        77 ~~DrpGLL~~I~~~L~~~glnI~~A~I  103 (372)
                      .+|.+|.++++.+.|.++|++|.....
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~   34 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQ   34 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence            378899999999999999999987655

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=81.64  E-value=12  Score=28.21  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=23.4

Q ss_pred             ECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          212 CQDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       212 ~~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      ..++||++++|..+|++.|+||..  |+
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDm--I~   36 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDL--IT   36 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEE--Ee
Confidence            368899999999999999999996  65

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=81.62  E-value=3.5  Score=43.13  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEE
Q 017424           67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  117 (372)
Q Consensus        67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V  117 (372)
                      .++...+-+.-.|+||.+..++..|.++++||...++... .++.++-++.+
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            3445566667799999999999999999999999988533 34566555544

>PLN02317 arogenate dehydratase

Probab=81.59  E-value=16  Score=36.69  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=30.3

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  105 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T  105 (372)
                      -+.|-+.-+|+||-|+++-.+|+.+|+|+.+-.-.-
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP  318 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP  318 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence            366666668999999999999999999999877543

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=81.56  E-value=15  Score=27.69  Aligned_cols=56  Identities=16%  Similarity=0.182  Sum_probs=36.0

Q ss_pred             CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          213 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       213 ~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      .+.||+++++..+|++.|+||..  |.  + +. ..=.|.+..+...+.+ +.+++|.+.|..
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDm--I~--~-s~-~~isftv~~~~~~~~~-~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDL--VS--T-SE-TNVTVSLDPDPNGLDP-DVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEE--EE--e-CC-CEEEEEEeCcccccch-HHHHHHHHHHHh
Confidence            57899999999999999999996  65  3 22 2223334322211322 356777777764

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09224 threonine dehydratase; Reviewed

Probab=81.25  E-value=41  Score=35.06  Aligned_cols=115  Identities=14%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhH-HHHHHHHHHHHhcCC
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK-QNGLSSRLWMELLQP  280 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~-~~~l~~~L~~~l~~~  280 (372)
                      +.....+.|.-+||||=|.++.++|.  +-||..-+-.  ..+.....+|+.-    .+.+++. .+.|.+.|.+   .+
T Consensus       325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr--~~~~~~a~V~vgi----e~~~~~~~~~~i~~~L~~---~g  393 (504)
T PRK09224        325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYR--YADAKEAHIFVGV----QLSRGQEERAEIIAQLRA---HG  393 (504)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEE--ecCCCeEEEEEEE----EeCChhhHHHHHHHHHHH---cC
Confidence            34567899999999999999999999  5777754333  2333344455421    1223333 6788888754   22


Q ss_pred             ceEEEeec-------------CCCcceeeeeeEEEEeCCCCchHHHHHHHHH-hCCeEEEE
Q 017424          281 LRVTVVSR-------------GPDTELLVANPVELSGKGRPLVFHDITLALK-MLDICIFS  327 (372)
Q Consensus       281 ~~v~i~~~-------------g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~-~~~~~V~~  327 (372)
                      ..+...+.             |-.+...-...+.+.=++|||=|.+-..+|. +-+|+-||
T Consensus       394 y~~~~ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~~~~~It~f~  454 (504)
T PRK09224        394 YPVVDLSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLGTHWNISLFH  454 (504)
T ss_pred             CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcCCCCeeEEEE
Confidence            22222111             1111111223577788999999999888885 24444443

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=81.13  E-value=6.4  Score=40.31  Aligned_cols=56  Identities=9%  Similarity=0.054  Sum_probs=40.1

Q ss_pred             CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEE--EEEEEecCCCC
Q 017424          202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI--DLFIMQADGKK  259 (372)
Q Consensus       202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~--d~F~v~~~g~~  259 (372)
                      ....|.|-+.-.|+||-|+++-++|+++|+|+.+  |.+........  =.|||+.+|..
T Consensus        28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh--IESRPsk~~~~e~Y~FfVD~Eg~~   85 (464)
T TIGR01270        28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH--LESRDSKDGTSKTMDVLVDVELFH   85 (464)
T ss_pred             CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEE--EECCcCCCCCCccEEEEEEEEcCH
Confidence            3445666677799999999999999999999995  76322222222  47888865543

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=81.06  E-value=21  Score=26.71  Aligned_cols=30  Identities=20%  Similarity=0.360  Sum_probs=24.6

Q ss_pred             eEEEEEE---CCcchHHHHHHHHHHhCCceEEE
Q 017424          206 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY  235 (372)
Q Consensus       206 tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~  235 (372)
                      +.|++.+   .+.||++.++..+|++.|+++..
T Consensus         2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~   34 (75)
T cd04912           2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL   34 (75)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence            3455543   57899999999999999999985

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PLN02317 arogenate dehydratase

Probab=81.05  E-value=9.8  Score=38.15  Aligned_cols=53  Identities=13%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCe---------------EEEEEEEecCCCC
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC---------------EIDLFIMQADGKK  259 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~---------------~~d~F~v~~~g~~  259 (372)
                      .|.|-+.-.|+||-|+++-.+|+..|+|+.+  |.+.....+               ..=.|||+.+|..
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtk--IESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~  350 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTK--IESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM  350 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEE--EEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence            4777777789999999999999999999995  763222222               2337899866654

>PRK08818 prephenate dehydrogenase; Provisional

Probab=80.74  E-value=6.8  Score=39.18  Aligned_cols=49  Identities=12%  Similarity=0.152  Sum_probs=35.9

Q ss_pred             CeeEEEEEEC-CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec
Q 017424          204 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA  255 (372)
Q Consensus       204 ~~tvi~v~~~-DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~  255 (372)
                      ..+.|.+.-+ |+||-|+++..+|++.|+||.+  |.+ .......-.||++.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~--Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSS--IHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccce--EEE-ecccCceEEEEEEE
Confidence            4666777776 9999999999999999999996  442 22222233388874

>PRK09084 aspartate kinase III; Validated

Probab=80.49  E-value=73  Score=32.67  Aligned_cols=34  Identities=21%  Similarity=0.455  Sum_probs=28.4

Q ss_pred             ceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEE
Q 017424           69 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVK  102 (372)
Q Consensus        69 ~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~  102 (372)
                      +...|+|.+.   +.+|.++++..+|.++|+||.--.
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~  341 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT  341 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence            4557888754   689999999999999999998664

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=80.15  E-value=19  Score=25.85  Aligned_cols=29  Identities=10%  Similarity=0.127  Sum_probs=25.4

Q ss_pred             EEEEEEeC---CCCcHHHHHHHHHHhCCceEE
Q 017424           71 FLLKLSCY---DRKGLLYDVTAVLCELELTIE   99 (372)
Q Consensus        71 ~~i~v~~~---DrpGLL~~I~~~L~~~glnI~   99 (372)
                      ..|.+.|.   +.||+++++..+|.+.|++|.
T Consensus         2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            35777775   789999999999999999996

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-04
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 62/401 (15%), Positives = 113/401 (28%), Gaps = 124/401 (30%)

Query: 40  IILF----FGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKG--------LLYDV 87
           +++      G + V    V L Y+  +Q      +F L L   +           LLY +
Sbjct: 153 VLIDGVLGSGKTWV-ALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 88  TAVLCE-------LELTIEKVK------ISTTP------------DGKVMDLF------F 116
                        ++L I  ++      + + P            + K  + F       
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 117 VTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLH 176
           +T TR    T      T  H+              M  T      +  S L    +D   
Sbjct: 270 LT-TRFKQVTDFLSAATTTHISLD--------HHSMTLTP----DEVKSLL-LKYLDCRP 315

Query: 177 LDMPVELPSGS-LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSY 235
            D+P E+ + +    S ++ +I + L+       + C     ++   +  L+    +  +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 236 GRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELL 295
                         L +       I  P+    L S +W ++     +         +L 
Sbjct: 376 ------------DRLSVFPPS-AHI--PTI---LLSLIWFDV-----IKSDVMVVVNKLH 412

Query: 296 VANPVELSGKGRPLVFHDITLALKM-------------------------------LDIC 324
             + VE   K   +    I L LK+                               LD  
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 325 IFSAEIGRHMIG---DREWEVYR-VLLDEGDGLSVPRNKIE 361
            +S  IG H+          ++R V LD          KI 
Sbjct: 473 FYS-HIGHHLKNIEHPERMTLFRMVFLD----FRFLEQKIR 508

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 73  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDL-FFVTDTREL 123
           +++   D+ G+   +T V+ + +  I  + +    DG    +L  FV +T +L
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVL-NAKDGIFTCNLMIFVKNTDKL 59

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 15/137 (10%), Positives = 37/137 (27%), Gaps = 40/137 (29%)

Query: 22  VITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL------------------------- 56
           VIT    D+ G+  ++ R++   G +I+     +                          
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 57  ------------YYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 104
                          +       +    + +   D+ GL    T    + ++ +  +   
Sbjct: 68  LLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ 127

Query: 105 TTPDGKVM---DLFFVT 118
           T    K+    + F + 
Sbjct: 128 TISKDKLHSEQNQFHIA 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.68
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.61
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.55
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.9
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.68
2f06_A	144	Conserved hypothetical protein; structural genomic	98.34
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.13
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.12
2f06_A	144	Conserved hypothetical protein; structural genomic	98.06
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.91
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.88
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.48
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.34
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.3
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.28
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.26
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.26
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.24
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.23
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.23
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.23
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.22
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.19
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.19
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.07
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.07
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.96
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.93
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.84
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.75
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.73
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.7
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.66
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.46
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.37
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.27
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.26
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.93
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.56
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.43
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.42
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.29
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.14
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.5
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	93.67
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.63
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.5
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.4
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	92.24
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	91.98
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.32
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	91.08
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.56
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.96
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.92
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	89.56
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.36
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.53
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	86.9
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	86.84
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	86.39
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	85.81
3luy_A	329	Probable chorismate mutase; structural genomics, A	84.82
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	84.8
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	82.91

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=1.3e-17  Score=150.05  Aligned_cols=166  Identities=12%  Similarity=0.089  Sum_probs=115.5

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  148 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~  148 (372)
                      ..++|+|+|+|||||+++|+++|+++|+||.+|++++..+++++ .|.|..+..  ..+.++++|++.|..++.+.    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~----   76 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQIST----   76 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEE----
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhc----
Confidence            35789999999999999999999999999999999988776776 777765321  11234556655554432210    


Q ss_pred             ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424          149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  228 (372)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~  228 (372)
                             ..          ..++ +                . .+    . ......++|+|.|+|||||+++|+++|++
T Consensus        77 -------~~----------~~~~-~----------------~-~~----~-~~~~~~~iltv~g~DrpGiva~Vt~~La~  116 (195)
T 2nyi_A           77 -------RR----------ASSV-A----------------E-RH----V-SPDTREYELYVEGPDSEGIVEAVTAVLAK  116 (195)
T ss_dssp             -------EE----------CCCC--------------------------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHH
T ss_pred             -------CC----------eEEE-E----------------e-CC----c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHH
Confidence                   01          0000 0                0 01    1 33456799999999999999999999999


Q ss_pred             CCceEEEEEEeeeecC--CeEEEEEEEec-CCCCCCChhHHHHHHHHHHHHhcC-CceEEEe
Q 017424          229 YNIQVSYGRFSRRQRG--NCEIDLFIMQA-DGKKIVDPSKQNGLSSRLWMELLQ-PLRVTVV  286 (372)
Q Consensus       229 ~~~~I~~a~i~~~t~g--~~~~d~F~v~~-~g~~l~~~~~~~~l~~~L~~~l~~-~~~v~i~  286 (372)
                      +|+||..++..  +.+  ++..+.|+++. -+.+  ++.. +.|++.|...... .+.+.+.
T Consensus       117 ~g~nI~~~~~~--t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a~~l~~di~~~  173 (195)
T 2nyi_A          117 KGANIVELETE--TLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVEEEFGVDIDLE  173 (195)
T ss_dssp             TTCEEEEEEEE--EEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCEEEceee--ecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHHHHcCeEEEEE
Confidence            99999998887  555  56779999862 2222  2345 7888888765543 3444443

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.68  E-value=1.1e-15  Score=136.73  Aligned_cols=158  Identities=11%  Similarity=0.062  Sum_probs=111.3

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  148 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~  148 (372)
                      ..++|+|+|+||||++++|+++|+++|+||.++++++..++.++ .|.|..+      +..+++|++.|.+.+.. .   
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~-~~~v~~~------~~~~~~l~~~L~~~~~~-~---   73 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL-LMLISGS------PSNITRVETTLPLLGQQ-H---   73 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEEC------HHHHHHHHHHHHHHHHH-H---
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEE-EEEEecC------CCCHHHHHHHHHHHHHh-c---
Confidence            35789999999999999999999999999999999886544444 7777542      24577888888875532 1   


Q ss_pred             ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424          149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  228 (372)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~  228 (372)
                           +...            ++.+.          .     .++     +..+...++|+|.|+||||++++|+.+|++
T Consensus        74 -----~~~~------------~~~~~----------~-----~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~  116 (192)
T 1u8s_A           74 -----DLIT------------MMKRT----------S-----PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQ  116 (192)
T ss_dssp             -----TCEE------------EEEEE----------C-----CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHH
T ss_pred             -----CCEE------------EEEeC----------C-----CCC-----CccCCceEEEEEEeCCCccHHHHHHHHHHH
Confidence                 0111            00000          0     011     234456799999999999999999999999


Q ss_pred             CCceEEEEEEeeeecCC----eEEEEEEEec-CCCCCCChhHHHHHHHHHHHHhc
Q 017424          229 YNIQVSYGRFSRRQRGN----CEIDLFIMQA-DGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       229 ~~~~I~~a~i~~~t~g~----~~~d~F~v~~-~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      +|+||.+++..  |.+.    +..+.|+++. -+.+  ++...+.|++.|.....
T Consensus       117 ~~~nI~~~~~~--t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          117 RQIGMASLSAQ--TISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCT  167 (192)
T ss_dssp             TTCCEEEEEEE--EEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHH
T ss_pred             cCCcHHHhhhh--cccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHH
Confidence            99999998877  6663    5789999862 1212  23346788888876554

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.61  E-value=4e-15  Score=133.69  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=92.4

Q ss_pred             CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEEec--c------------------------CC-
Q 017424           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYRAE--M------------------------QA-   64 (372)
Q Consensus        19 ~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v~d--~------------------------~~-   64 (372)
                      ..++|+|+|+||||||++++++|+.+|+||++|+++++       +.+..  .                        .. 
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~   83 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSVA   83 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC-
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            35799999999999999999999999999999999986       22221  0                        00 


Q ss_pred             ----CCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           65 ----PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        65 ----~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                          ......++|+|.|+|||||+++|+++|+++|+||.++++.|... ++..+.|++....+.+ +... +.|++.|..
T Consensus        84 ~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~l~~  161 (195)
T 2nyi_A           84 ERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTALSR  161 (195)
T ss_dssp             ---CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHHHHH
T ss_pred             eCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHHHHH
Confidence                11235689999999999999999999999999999999976530 2345777776543322 2334 778888876


Q ss_pred             HHc
Q 017424          140 ILG  142 (372)
Q Consensus       140 ~L~  142 (372)
                      ...
T Consensus       162 ~a~  164 (195)
T 2nyi_A          162 VEE  164 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.55  E-value=6.9e-14  Score=125.04  Aligned_cols=122  Identities=12%  Similarity=0.160  Sum_probs=90.2

Q ss_pred             eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEEec-------------------------c--C--
Q 017424           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYRAE-------------------------M--Q--   63 (372)
Q Consensus        20 ~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v~d-------------------------~--~--   63 (372)
                      .++|+|+|+||||+|++++++|+.+|+||+++++++.       +.+..                         +  .  
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~   85 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSPH   85 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            4789999999999999999999999999999999876       22321                         0  0  


Q ss_pred             C-CCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC---CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           64 A-PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD---GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        64 ~-~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~---~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      . ..+...++|+|.++||||++++|+++|+++|+||.+++..|...   .+..+.|++....+.+ +....+.|++.|..
T Consensus        86 ~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~l~~~l~~  164 (192)
T 1u8s_A           86 DHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQLQEEFDA  164 (192)
T ss_dssp             CCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHHHHHHHHH
T ss_pred             CCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHHHHHHHHH
Confidence            0 11225689999999999999999999999999999999977531   2456778776543211 12235778888876


Q ss_pred             HHc
Q 017424          140 ILG  142 (372)
Q Consensus       140 ~L~  142 (372)
                      ...
T Consensus       165 ~~~  167 (192)
T 1u8s_A          165 LCT  167 (192)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.90  E-value=9.2e-08  Score=94.74  Aligned_cols=166  Identities=10%  Similarity=0.045  Sum_probs=103.9

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHh--HHHHHHHHHHHHHcccc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK--RKEDTYEHLKTILGNAM  145 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~--~~~~l~~~L~~~L~~~~  145 (372)
                      ...++|+|.|+||||+.+.|+++|+++|+||.++..++. +|++.-...+.-+      +.  ..+.|++.|.. +..+.
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~-~~~f~~~~~~~~~------~~~~~~~~l~~~l~~-~~~~~   81 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI-RHRLTLGVLVCCP------ADVADGPALRHDVEA-AIRKV   81 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE-TTEEEEEEEEEEC------HHHHTSHHHHHHHHH-HHHHT
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE-CCEeEEEEEEEec------CCcCCHHHHHHHHHH-HHHHc
Confidence            346899999999999999999999999999999999764 5654333333221      21  23677777766 33221


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECC-cchHHHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD-HKGLLYDIMR  224 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~D-RpGLL~~i~~  224 (372)
                              +....            ++.           .+    .++     ......+.++++.+.| +||++.+|+.
T Consensus        82 --------~~~~~------------~~~-----------~~----~~~-----~~~~~~~~~~~llg~~~~~~~~~~i~~  121 (415)
T 3p96_A           82 --------GLDVS------------IER-----------SD----DVP-----IIREPSTHTIFVLGRPITAAAFGAVAR  121 (415)
T ss_dssp             --------TCEEE------------EEE-----------CS----SSC-----SSCCCCSEEEEEEESSCCHHHHHHHHH
T ss_pred             --------CeEEE------------EEE-----------CC----ccc-----ccCCCCcEEEEEEeCCCCHHHHHHHHH
Confidence                    11110            000           00    000     1133467899999999 9999999999


Q ss_pred             HHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-CCceEEEeecC
Q 017424          225 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPLRVTVVSRG  289 (372)
Q Consensus       225 ~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~~~~v~i~~~g  289 (372)
                      +|+++|.||...+--  +......-.|++..  .+    ...++++++|.+... ..+.+.+.+.+
T Consensus       122 ~l~~~~~Ni~~l~~~--~~~~~~~~~~~v~~--~~----~~~~~l~~~l~~l~~~~~vD~~v~~~~  179 (415)
T 3p96_A          122 EVAALGVNIDLIRGV--SDYPVIGLELRVSV--PP----GADEALRTALNRVSSEEHVDVAVEDYT  179 (415)
T ss_dssp             HHHHTTCEEEEEEEE--ESSSSEEEEEEEEC--CT----TCHHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             HHHHcCCCccceeec--cCCCceEEEEEeeC--CC----CCHHHHHHHHHHHhhhcCcCccccccc
Confidence            999999999874433  43233333366642  12    234667777765543 34555555544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.68  E-value=4.6e-07  Score=89.70  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=83.0

Q ss_pred             CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE---------EEEe----c------------------------
Q 017424           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL---------YYRA----E------------------------   61 (372)
Q Consensus        19 ~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~---------f~v~----d------------------------   61 (372)
                      ..+.|+|.|+||||+.+.+++.|+++|+||++++.+..         |...    +                        
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   90 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIERS   90 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEEEC
Confidence            45789999999999999999999999999999999775         2111    1                        


Q ss_pred             -cC-CCCCCceEEEEEEeCC-CCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHH
Q 017424           62 -MQ-APKPSDVFLLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  138 (372)
Q Consensus        62 -~~-~~~~~~~~~i~v~~~D-rpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~  138 (372)
                       .. ......++.+++.+.| ++|++.+|+.+|+++|+||.+.+..+......++ |++..+.   .+   .+.+++.|.
T Consensus        91 ~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~-~~v~~~~---~~---~~~l~~~l~  163 (415)
T 3p96_A           91 DDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLE-LRVSVPP---GA---DEALRTALN  163 (415)
T ss_dssp             SSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEE-EEEECCT---TC---HHHHHHHHH
T ss_pred             CcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEE-EEeeCCC---CC---HHHHHHHHH
Confidence             00 1123467899999999 9999999999999999999988875532223222 5554322   12   345555555


Q ss_pred             HH
Q 017424          139 TI  140 (372)
Q Consensus       139 ~~  140 (372)
                      +.
T Consensus       164 ~l  165 (415)
T 3p96_A          164 RV  165 (415)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.34  E-value=1.3e-05  Score=67.52  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE------E-EEEecc--------CCCCC-CceEEEEEEeCCCCcHH
Q 017424           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVV------L-YYRAEM--------QAPKP-SDVFLLKLSCYDRKGLL   84 (372)
Q Consensus        21 ~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t------~-f~v~d~--------~~~~~-~~~~~i~v~~~DrpGLL   84 (372)
                      ..|+|..+|+||.++++++.|++.|+||..-.+..      + |.+.|.        ..... ....++.+.-+|+||.+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~~a~~~L~~~G~~v~~~svv~v~~~d~pGvl   86 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGAL   86 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHTTCCEEEEEEEEEEEESSTTHH
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHHHHHHHHHHcCCeEeeeeEEEEEeCCCCcHH
Confidence            57889999999999999999999999998765542      1 444330        01111 11236667789999999


Q ss_pred             HHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424           85 YDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  117 (372)
Q Consensus        85 ~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V  117 (372)
                      ++++++|++.|+||.....+. .+++..-+|.+
T Consensus        87 a~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~  118 (144)
T 2f06_A           87 AKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP  118 (144)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence            999999999999998777642 34555445544

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.13  E-value=1.6e-05  Score=61.44  Aligned_cols=67  Identities=7%  Similarity=0.101  Sum_probs=48.3

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ..+.|++.|+||||+|++|+.+|+++|+||.+....  +..+...-.+.+...     +...++.|.+.|.+.-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~--~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQT--VLDEYFTMMAVVSSD-----EKQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEES-----SCCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeE--EEcCEEEEEEEEEeC-----CCCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999987766  444433333333321     2234678888887554

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.12  E-value=2e-05  Score=60.88  Aligned_cols=66  Identities=12%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ..+.|++.++||||++++|+++|+++|+||.+....+.. +.+.-.+.+.-++     ...+++|.+.|.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~-~~~~~~i~v~~~~-----~~~l~~l~~~L~~~   69 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD-EYFTMMAVVSSDE-----KQDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEESS-----CCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc-CEEEEEEEEEeCC-----CCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999997764 6665555553322     12357787887763

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.06  E-value=0.00021  Score=59.96  Aligned_cols=111  Identities=20%  Similarity=0.231  Sum_probs=72.4

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccccc
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCD  149 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~  149 (372)
                      ...|+|..+|+||.++++++.|++.|+||..-.+..+.+. ..-.|.+.       ++   ++.++.|++.  +      
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~-~~~~~~~~-------d~---~~a~~~L~~~--G------   66 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADF-GILRGIVS-------DP---DKAYKALKDN--H------   66 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSC-EEEEEEES-------CH---HHHHHHHHHT--T------
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCC-CEEEEEeC-------CH---HHHHHHHHHc--C------
Confidence            3578889999999999999999999999998877543331 11123321       12   3333333321  1      


Q ss_pred             cccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhC
Q 017424          150 VEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDY  229 (372)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~  229 (372)
                             .                                    .+.       .+.++-+.-+|+||.+++++++|++.
T Consensus        67 -------~------------------------------------~v~-------~~svv~v~~~d~pGvla~i~~~L~~~   96 (144)
T 2f06_A           67 -------F------------------------------------AVN-------ITDVVGISCPNVPGALAKVLGFLSAE   96 (144)
T ss_dssp             -------C------------------------------------CEE-------EEEEEEEEEESSTTHHHHHHHHHHHT
T ss_pred             -------C------------------------------------eEe-------eeeEEEEEeCCCCcHHHHHHHHHHHC
Confidence                   0                                    000       01467777889999999999999999


Q ss_pred             CceEEEEEEeeeecCCeEEEEE
Q 017424          230 NIQVSYGRFSRRQRGNCEIDLF  251 (372)
Q Consensus       230 ~~~I~~a~i~~~t~g~~~~d~F  251 (372)
                      |+||.+....  ..+.+..-.|
T Consensus        97 ~InI~~~~~~--~~~~~~~~~i  116 (144)
T 2f06_A           97 GVFIEYMYSF--ANNNVANVVI  116 (144)
T ss_dssp             TCCEEEEEEE--EETTEEEEEE
T ss_pred             CCCEEEEEEE--ccCCcEEEEE
Confidence            9999764332  1344444444

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.91  E-value=6e-05  Score=57.46  Aligned_cols=63  Identities=11%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  138 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~  138 (372)
                      .+.|.|.+.||||+|++|+++|++.|+||.+..+.+.. +.+...|.+...     +.+.++++.+.|+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~~~~~~i~v~~~-----~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-GIFTCNLMIFVK-----NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-SEEEEEEEEEES-----SHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-CEEEEEEEEEEC-----CHHHHHHHHHHHh
Confidence            46789999999999999999999999999999996654 465555555332     2334455544443

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.88  E-value=5.8e-05  Score=57.54  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ..+.|.+.+.||||+|++|+.+|++.|+||.+....  +.++.+...|.+..     .+++.++++.+.|.
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~--~~~~~~~~~i~v~~-----~~~~~l~~l~~~L~   67 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLN--AKDGIFTCNLMIFV-----KNTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEE--ECSSEEEEEEEEEE-----SSHHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEE--EcCCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence            357889999999999999999999999999987776  54544444554432     24556666666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.48  E-value=0.0053  Score=52.86  Aligned_cols=110  Identities=18%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             CceEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccc
Q 017424           68 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  146 (372)
Q Consensus        68 ~~~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~  146 (372)
                      .+...|+|.+ +|+||.+++|.++|+++|+||..-....+.+|..-=.|.|..        ...++..+.|++ +..+. 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~l-   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDSI-   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG--------GGHHHHHHHHHH-SSTTT-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHHc-
Confidence            3567889985 999999999999999999999876543222343323466632        112333344444 21110 


Q ss_pred             ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECC---cchHHHHHH
Q 017424          147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD---HKGLLYDIM  223 (372)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~D---RpGLL~~i~  223 (372)
                                           .                       ...|.+.    .+.+.+.|.|.+   +||+++.+.
T Consensus        93 ---------------------~-----------------------~~~i~~~----~~~a~vsvvG~~m~~~~Gv~a~i~  124 (167)
T 2re1_A           93 ---------------------G-----------------------AASIDGD----DTVCKVSAVGLGMRSHVGVAAKIF  124 (167)
T ss_dssp             ---------------------T-----------------------CSEEEEE----SSEEEEEEECSSCTTCCCHHHHHH
T ss_pred             ---------------------C-----------------------CceEEec----CCEEEEEEECCCcCCCcCHHHHHH
Confidence                                 0                       0123332    357899999987   999999999


Q ss_pred             HHHHhCCceEEE
Q 017424          224 RTLKDYNIQVSY  235 (372)
Q Consensus       224 ~~L~~~~~~I~~  235 (372)
                      .+|.+.|+||..
T Consensus       125 ~aL~~~~InI~~  136 (167)
T 2re1_A          125 RTLAEEGINIQM  136 (167)
T ss_dssp             HHHHHTTCCCCE
T ss_pred             HHHHHCCCcEEE
Confidence            999999999997

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.34  E-value=0.0012  Score=62.25  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=48.1

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..++|++.|+|||||.++|+++|+++|+||.+...++.. .|++.-...+.-+.+. .   ..++|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~---~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-I---PLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-C---CHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-C---CHHHHHHHHHH
Confidence            357899999999999999999999999999999987433 5655333333222211 1   24677777765

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.30  E-value=0.00049  Score=64.91  Aligned_cols=79  Identities=10%  Similarity=0.127  Sum_probs=50.0

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHhc-CC
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMELL-QP  280 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l~-~~  280 (372)
                      ..++|++.|+|||||++.|+..|+++|+||.+..-.+....+    .|+..  .+....  ....++|++.|...-. -.
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g----~Ffmr~~~~~~~~--~~~~~~L~~~f~~la~~~~   78 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESG----HFFMRVVFNAAAK--VIPLASLRTGFGVIAAKFT   78 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTT----EEEEEEEEEESSC--CCCHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCC----ceEEEEEEEcCCC--CCCHHHHHHHHHHHHHHcC
Confidence            357999999999999999999999999999986654222233    56543  111110  1135677777754332 13


Q ss_pred             ceEEEeec
Q 017424          281 LRVTVVSR  288 (372)
Q Consensus       281 ~~v~i~~~  288 (372)
                      +.+.+.+.
T Consensus        79 m~~~l~~~   86 (288)
T 3obi_A           79 MGWHMRDR   86 (288)
T ss_dssp             CEEEEEET
T ss_pred             CEEEeecc
Confidence            34444443

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.28  E-value=0.0012  Score=62.31  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..++|++.|+|||||.++|++.|+++|+||.++..++.. .|++.-...+.. .+     ...++|++.|..
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~-----~~~~~L~~~f~~   71 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PV-----AGVNDFNSAFGK   71 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC--------CHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CC-----CCHHHHHHHHHH
Confidence            468999999999999999999999999999999987433 555432222221 11     113467777665

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.26  E-value=0.00044  Score=65.64  Aligned_cols=65  Identities=15%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHH
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      .++|++.|+|||||++.|+..|+++|+||.++.-.+....+    .|+.+  .+....  ....++|++.|..
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g----~FfMr~~~~~~~~--~~~~~~L~~~l~~   88 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSG----WFFMRHEIRADTL--PFDLDGFREAFTP   88 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTT----EEEEEEEEEGGGS--SSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCC----eEEEEEEEecCCC--CCCHHHHHHHHHH
Confidence            47999999999999999999999999999986655222233    56654  221111  1135667777653

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.26  E-value=0.00061  Score=64.34  Aligned_cols=66  Identities=9%  Similarity=0.087  Sum_probs=45.3

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCC--CCCChhHHHHHHHHHHH
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGK--KIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~--~l~~~~~~~~l~~~L~~  275 (372)
                      ..++|++.|+|||||++.|+..|+++|+||.+..-.+....+    .|+.+  .+..  ..  ....++|++.|..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g----~Ffmr~~~~~~~~~~--~~~~~~L~~~f~~   78 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSA----RFFVRCVFHATDDAD--ALRVDALRREFEP   78 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTT----EEEEEEEEEECC------CCHHHHHHHHHH
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCC----ceEEEEEEEccCccc--CCCHHHHHHHHHH
Confidence            458999999999999999999999999999986654222233    56554  2222  10  1235677777753

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.24  E-value=0.0017  Score=61.27  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEcCC-CCCCCHhHHHHHHHHHHH
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTR-ELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~~~-g~~~~~~~~~~l~~~L~~  139 (372)
                      ...+++++.|+||||++++|++.|+++|+||.++..++. ..|++.-...+..+. +.   ....++|++.|..
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~---~~~~~~L~~~f~~   78 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDAD---ALRVDALRREFEP   78 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-------CCHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCccc---CCCHHHHHHHHHH
Confidence            346899999999999999999999999999999998643 245543222222210 10   1125677777765

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.23  E-value=0.25  Score=51.03  Aligned_cols=245  Identities=18%  Similarity=0.208  Sum_probs=143.9

Q ss_pred             CeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEE-------EEE-EEEec--------------cCC-------C---
Q 017424           19 DPCVITVNC-PDKTGLGCDLCRIILFFGLSIVRGAS-------VVL-YYRAE--------------MQA-------P---   65 (372)
Q Consensus        19 ~~~~v~v~~-~Dr~GL~~~i~~~l~~~~lnI~~a~i-------~t~-f~v~d--------------~~~-------~---   65 (372)
                      +...|++.. ++.+|..+++.+.|+++++||.---.       .+. |.+.+              ..+       .   
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~  348 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAE  348 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSE
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcce
Confidence            345566654 79999999999999999999932211       122 66643              011       1   


Q ss_pred             --CCCceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           66 --KPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        66 --~~~~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                        ...+...|.+.+.   .+||+.+++..+|++.|+||..-.  ++  +.- -.|.|..        +..++..+.|.+.
T Consensus       349 v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~-Is~vI~~--------~d~~~Av~aLh~~  415 (600)
T 3l76_A          349 IIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVK-VSCVIDQ--------RDADRAIAALSNA  415 (600)
T ss_dssp             EEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSE-EEEEEEG--------GGHHHHHHHHHHH
T ss_pred             eEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCE-EEEEEcH--------HHHHHHHHHHHHh
Confidence              1256778999985   799999999999999999997654  33  322 1244432        2234455566665


Q ss_pred             HcccccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEE-ECCcchHH
Q 017424          141 LGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDHKGLL  219 (372)
Q Consensus       141 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~-~~DRpGLL  219 (372)
                      +.....        +..         ....+.+           .    ..-+-|..+    .+.+.|++. -+|+||+.
T Consensus       416 f~~~~t--------~~~---------~~~~~~~-----------~----~~v~Gia~~----~~~a~i~i~~~~~~~g~~  459 (600)
T 3l76_A          416 FGVTLS--------PPK---------NQTDTSH-----------L----PAVRGVALD----QDQAQIAIRHVPDRPGMA  459 (600)
T ss_dssp             TTCCBC--------CCC---------CCCC--------------C----CSCCEEEEE----CSEEEEEEEEEESSTTHH
T ss_pred             hcccCC--------Ccc---------ccccccc-----------c----CceEEEEee----CCEEEEEEecCCCCccHH
Confidence            542110        000         0000000           0    001234433    345666665 48999999


Q ss_pred             HHHHHHHHhCCceEEEEEEeeeec---CC-eEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCc---eEEEeecCCCc
Q 017424          220 YDIMRTLKDYNIQVSYGRFSRRQR---GN-CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL---RVTVVSRGPDT  292 (372)
Q Consensus       220 ~~i~~~L~~~~~~I~~a~i~~~t~---g~-~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~---~v~i~~~g~~~  292 (372)
                      ++|...|++.|+||..-.-+.+.+   |. ...=.|.+.        .+..+...+.|.+ +...+   .+.+. .+   
T Consensus       460 ~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~--------~~d~~~a~~~l~~-~~~~~~~~~v~~~-~~---  526 (600)
T 3l76_A          460 AQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVA--------EGDSSQAEAILQP-LIKDWLDAAIVVN-KA---  526 (600)
T ss_dssp             HHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEE--------HHHHHHHHHHHHH-HTTTSTTCEEEEE-CC---
T ss_pred             HHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEe--------HHHHHHHHHHHHH-HHHhcCCceEEEe-CC---
Confidence            999999999999997411111111   21 223345553        2233444444443 22211   22221 11   


Q ss_pred             ceeeeeeEEEEe---CCCCchHHHHHHHHHhCCeEEEEEE
Q 017424          293 ELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAE  329 (372)
Q Consensus       293 ~~~~~~~~~v~~---~DRpgll~dvt~~L~~~~~~V~~a~  329 (372)
                          ...+.+.|   +.+||+...+-.+|.+.|+||..-.
T Consensus       527 ----~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          527 ----IAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             ----EEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             ----eEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence                24688888   6999999999999999999995544

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.23  E-value=0.00063  Score=64.13  Aligned_cols=106  Identities=11%  Similarity=0.137  Sum_probs=61.7

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHhcC-C
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMELLQ-P  280 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l~~-~  280 (372)
                      ..++|++.|+|||||++.|+..|+++|+||.+..-.+....+    .|+.+  .+....    ..++|++.|...-.+ .
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g----~Ffmr~~~~~~~~----~~~~L~~~f~~la~~~~   77 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSS----KFFMRVSVEIPVA----GVNDFNSAFGKVVEKYN   77 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTT----EEEEEEEEECCC-------CHHHHHHHHHHGGGT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCC----eEEEEEEEEcCCC----CHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999986654222233    67664  222221    234677777543322 2


Q ss_pred             ceEEEeecCCCcceeeeeeEEEEeCCCCchHHHHHHHHHhCCe
Q 017424          281 LRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDI  323 (372)
Q Consensus       281 ~~v~i~~~g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~  323 (372)
                      +.+.+...+....    ..+=++|.+  --|.++....++-.+
T Consensus        78 m~~~l~~~~~~~r----i~vl~Sg~g--~nl~~ll~~~~~g~l  114 (287)
T 3nrb_A           78 AEWWFRPRTDRKK----VVIMVSKFD--HCLGDLLYRHRLGEL  114 (287)
T ss_dssp             CEEEEEETTCCCE----EEEEECSCC--HHHHHHHHHHHHTSS
T ss_pred             CeeEeeccCCCcE----EEEEEeCCC--cCHHHHHHHHHCCCC
Confidence            3444443332111    122334443  455666666654433

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.23  E-value=0.0027  Score=54.69  Aligned_cols=109  Identities=14%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             CCeeEEEEEE-CCcchHHHHHHHHHHhCCceEEEEEEeeeec---CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          203 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       203 ~~~tvi~v~~-~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~---g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .+.+.|++.+ .|+||.++++..+|++.|+||..  |+.+..   .+...=.|.+..     .+.++..++-+.+...+.
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~--I~q~~~~~~~g~~~isf~V~~-----~d~~~a~~~L~~~~~~~~   86 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM--IIQGVPGHDPSRQQMAFTVKK-----DFAQEALEALEPVLAEIG   86 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC--EEBCCCCSCTTEEEEEEEEEG-----GGHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE--EEcCCCCCCCCceEEEEEEeh-----HHHHHHHHHHHHHHHHhC
Confidence            4578888877 79999999999999999999985  542111   113334566652     122222222233333444


Q ss_pred             CCceEEEeecCCCcceeeeeeEEEEeCC---CCchHHHHHHHHHhCCeEEEEE
Q 017424          279 QPLRVTVVSRGPDTELLVANPVELSGKG---RPLVFHDITLALKMLDICIFSA  328 (372)
Q Consensus       279 ~~~~v~i~~~g~~~~~~~~~~~~v~~~D---Rpgll~dvt~~L~~~~~~V~~a  328 (372)
                      -  .+.+ ..+       ...+.+.|.+   +||++..+..+|.+.|+||+.-
T Consensus        87 ~--~v~~-~~~-------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           87 G--EAIL-RPD-------IAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             C--EEEE-ECS-------EEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             C--cEEE-eCC-------EEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence            2  3332 111       2368888976   9999999999999999999543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.22  E-value=0.00092  Score=62.97  Aligned_cols=65  Identities=12%  Similarity=0.116  Sum_probs=46.0

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHH
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      .++|++.|+|||||++.|+..|+++|+||.+..-.+....+    .|+.+  .+...   ....++|++.|...
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g----~Ffmr~~~~~~~---~~~~~~L~~~f~~l   74 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSG----RFFIRVEFRQPD---DFDEAGFRAGLAER   74 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTT----EEEEEEEEECCS---SCCHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCC----eeEEEEEEecCC---CCCHHHHHHHHHHH
Confidence            48999999999999999999999999999986654222233    56654  22111   12357788887644

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.19  E-value=0.0023  Score=60.16  Aligned_cols=66  Identities=15%  Similarity=0.113  Sum_probs=47.8

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..++|++.|+|||||+++|++.|+++|+||.+...++.. .|++.-...+..+.  ..   ..++|++.|..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~---~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DF---DEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SC---CHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CC---CHHHHHHHHHH
Confidence            457899999999999999999999999999999986432 45543233332221  12   25678887766

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.19  E-value=0.0016  Score=56.21  Aligned_cols=64  Identities=17%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ..|+|...|+||+|++|+++|++.|+||.+..+.++.+ +...-+|.|..   .   +..++++.+.|.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~---d---~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG---D---EKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES---C---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec---c---HHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999976664 66555566642   1   55677787777773

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.07  E-value=0.0048  Score=53.13  Aligned_cols=105  Identities=17%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             CeeEEEEEE-CCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCc
Q 017424          204 GHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  281 (372)
Q Consensus       204 ~~tvi~v~~-~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~  281 (372)
                      +.+.|+|.+ .|+||.++++..+|+++|+||..  |+.+.. ++...=.|++..        ...++..+.|.+. ...+
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~--i~~s~~~~g~~~isf~v~~--------~~~~~a~~~l~~~-~~~l   92 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDM--IIQNVGSEGTTDFSFTVPR--------GDYKQTLEILSER-QDSI   92 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCC--EEEC----CEEEEEEEECG--------GGHHHHHHHHHHS-STTT
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEE--EEcCCCCCCeeEEEEEEec--------hHHHHHHHHHHHH-HHHc
Confidence            568888885 89999999999999999999996  432111 122233455542        1223334444432 2211


Q ss_pred             ---eEEEeecCCCcceeeeeeEEEEeCC---CCchHHHHHHHHHhCCeEEEE
Q 017424          282 ---RVTVVSRGPDTELLVANPVELSGKG---RPLVFHDITLALKMLDICIFS  327 (372)
Q Consensus       282 ---~v~i~~~g~~~~~~~~~~~~v~~~D---Rpgll~dvt~~L~~~~~~V~~  327 (372)
                         .+.+ ..+       ...+.+.|.+   +||++..+..+|.+.|+||..
T Consensus        93 ~~~~i~~-~~~-------~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A           93 GAASIDG-DDT-------VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             TCSEEEE-ESS-------EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             CCceEEe-cCC-------EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence               1111 111       2468889976   999999999999999999966

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.07  E-value=0.0029  Score=59.93  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..++|++.|+|||||+++|++.|+++|+||.++..++.. .|++.-...+.-+.+ ..   ..++|++.|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~---~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF---DLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS---CHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC---CHHHHHHHHHH
Confidence            357999999999999999999999999999999986542 466533333322111 11   24677777765

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.96  E-value=0.0028  Score=54.73  Aligned_cols=66  Identities=6%  Similarity=0.063  Sum_probs=48.9

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ..|+|...||||+|++|+.+|++.|+||.+..+.. +. .+...-.|.++.      +++.++.|..+|.+...
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~-t~d~~~sriti~V~~------d~~~leqI~kqL~Kl~d   70 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAP-TDDPTLSRMTIQTVG------DEKVLEQIEKQLHKLVD   70 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE-CSCSSEEEEEEEEES------CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeee-cCCCCEEEEEEEEec------cHHHHHHHHHHHcCCCC
Confidence            57889999999999999999999999999866652 22 233333444431      35678899999876543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.93  E-value=0.0029  Score=54.66  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ..|+|...|+||+|++|+++|++.|+||.+..+..+.+ +...-+|.|..      ++..++++.+.|.+.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcCC
Confidence            57889999999999999999999999999999976653 65555566642      145677787777773

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.84  E-value=0.0038  Score=53.43  Aligned_cols=59  Identities=14%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  275 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~  275 (372)
                      -|+|.|.||+|||.+|+.+|++.++||....+.  +.|.     ++++.   +..+.+....|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~--~~g~-----i~~~~---~~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--PIGR-----IYLNF---AELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEE--TTTE-----EEEEE---CCCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEe--cCCE-----EEEEE---EeCCHHHHHHHHHHHHc
Confidence            378999999999999999999999999997776  4432     44543   22345566777766653

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.75  E-value=0.0087  Score=52.09  Aligned_cols=83  Identities=16%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             CCeEEEEE-EcCCCCChHHHHHHHHHhCCCeEEEEEEE-------EE---EEEec----------cC----CC-----CC
Q 017424           18 GDPCVITV-NCPDKTGLGCDLCRIILFFGLSIVRGASV-------VL---YYRAE----------MQ----AP-----KP   67 (372)
Q Consensus        18 ~~~~~v~v-~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~-------t~---f~v~d----------~~----~~-----~~   67 (372)
                      .+.+.|+| ..+|+||..+++.+.|+++|+||.---..       ..   |.+..          ..    ..     ..
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~   92 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYD   92 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEE
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEe
Confidence            35678888 46999999999999999999887654332       21   55542          01    11     12


Q ss_pred             CceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEE
Q 017424           68 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEK  100 (372)
Q Consensus        68 ~~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~  100 (372)
                      .+...|.|.|.   ++||.++++.++|++.|+||..
T Consensus        93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~  128 (178)
T 2dtj_A           93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL  128 (178)
T ss_dssp             SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred             CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence            45678899986   8999999999999999999987

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.73  E-value=0.028  Score=48.84  Aligned_cols=110  Identities=22%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             CceEEEEEE-eCCCCcHHHHHHHHHHhCCceEEEEEEEeeC--CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccc
Q 017424           68 SDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  144 (372)
Q Consensus        68 ~~~~~i~v~-~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~--~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~  144 (372)
                      .+.+.|+|. .+|+||.+++|.+.|+++|+||..-...+..  ++..--.|.+..        ...++..+.|++ +..+
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHHh
Confidence            356788884 5999999999999999999999866543221  222211266543        112333333333 1110


Q ss_pred             ccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC---CcchHHHH
Q 017424          145 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  221 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~  221 (372)
                      .                      .                       ...+.++    .+...|.|.|.   ++||+++.
T Consensus        84 ~----------------------~-----------------------~~~v~~~----~~~a~VsvVG~gm~~~~Gv~ar  114 (178)
T 2dtj_A           84 G----------------------N-----------------------WTNVLYD----DQVGKVSLVGAGMKSHPGVTAE  114 (178)
T ss_dssp             T----------------------T-----------------------CSEEEEE----SCEEEEEEEEECCTTCHHHHHH
T ss_pred             c----------------------C-----------------------CCeEEEe----CCeEEEEEEcCCcccCccHHHH
Confidence            0                      0                       0124433    35688899987   89999999


Q ss_pred             HHHHHHhCCceEEE
Q 017424          222 IMRTLKDYNIQVSY  235 (372)
Q Consensus       222 i~~~L~~~~~~I~~  235 (372)
                      +.++|++.|+||..
T Consensus       115 if~aLa~~~InI~~  128 (178)
T 2dtj_A          115 FMEALRDVNVNIEL  128 (178)
T ss_dssp             HHHHHHHTTCCCCE
T ss_pred             HHHHHHHCCCCEEE
Confidence            99999999999986

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.70  E-value=0.0051  Score=53.08  Aligned_cols=66  Identities=5%  Similarity=0.065  Sum_probs=49.0

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ..|+|...||||+|++|+.+|++.|+||.+..+.. +. .+...-.|.++.      ++..++.|.++|.+...
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~-t~d~g~sritivV~~------d~~~leql~kQL~Kl~d   71 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAP-TEDPTLSRMTLVTNG------PDEIVEQITKQLNKLIE   71 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEE-CSSTTEEEEEEEEEE------CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEe-cCCCCEEEEEEEEec------cHHHHHHHHHHhcCCCC
Confidence            57889999999999999999999999999866652 22 233343444432      35678889999876553

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.66  E-value=0.024  Score=48.59  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             CceEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEee--CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccc
Q 017424           68 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTT--PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  144 (372)
Q Consensus        68 ~~~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~--~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~  144 (372)
                      .+.+.|++.+ +|+||.++++.++|++.|+||..-....+  ..|..-=.|.|...        ..++..+.|.+.... 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~--------d~~~a~~~L~~~~~~-   84 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD--------FAQEALEALEPVLAE-   84 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG--------GHHHHHHHHHHHHHH-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH--------HHHHHHHHHHHHHHH-
Confidence            4567888887 89999999999999999999986543211  12333234666431        122333334331110 


Q ss_pred             ccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECC---cchHHHH
Q 017424          145 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD---HKGLLYD  221 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~D---RpGLL~~  221 (372)
                      .                                            . - .+.++    .+...+.+.|.+   +||+++.
T Consensus        85 ~--------------------------------------------~-~-~v~~~----~~~a~vsvVG~gm~~~~Gv~a~  114 (167)
T 2dt9_A           85 I--------------------------------------------G-G-EAILR----PDIAKVSIVGVGLASTPEVPAK  114 (167)
T ss_dssp             H--------------------------------------------C-C-EEEEE----CSEEEEEEEESSGGGSTHHHHH
T ss_pred             h--------------------------------------------C-C-cEEEe----CCEEEEEEECCCcccCcCHHHH
Confidence            0                                            0 0 23332    357889999987   9999999


Q ss_pred             HHHHHHhCCceEEE
Q 017424          222 IMRTLKDYNIQVSY  235 (372)
Q Consensus       222 i~~~L~~~~~~I~~  235 (372)
                      +..+|.+.|+||..
T Consensus       115 ~f~aL~~~~InI~~  128 (167)
T 2dt9_A          115 MFQAVASTGANIEM  128 (167)
T ss_dssp             HHHHHHHTTCCCCE
T ss_pred             HHHHHHHCCCCEEE
Confidence            99999999999964

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.46  E-value=0.054  Score=47.23  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             CceEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeC--CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccc
Q 017424           68 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  144 (372)
Q Consensus        68 ~~~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~--~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~  144 (372)
                      .+.+.|+|.+ +|+||.+++|.++|+++|+||.--......  +|..--.|.|...+        .++..+.|++ +..+
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~--------~~~a~~~L~~-~~~e   84 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--------GPAAVEKLDS-LRNE   84 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT--------HHHHHHHHHH-THHH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH--------HHHHHHHHHH-HHHh
Confidence            3566777754 899999999999999999999754432222  35444457665421        1233333333 1110


Q ss_pred             ccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC---CcchHHHH
Q 017424          145 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  221 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~  221 (372)
                      .                           .                  ...|.++    .+...|.+.|.   ++||+.+.
T Consensus        85 l---------------------------~------------------~~~v~~~----~~va~VsvVG~gm~~~~Gvaa~  115 (181)
T 3s1t_A           85 I---------------------------G------------------FSQLLYD----DHIGKVSLIGAGMRSHPGVTAT  115 (181)
T ss_dssp             H---------------------------C------------------CSEEEEE----SCEEEEEEEEECCTTCHHHHHH
T ss_pred             c---------------------------C------------------cceEEEe----CCEEEEEEEecccccCchHHHH
Confidence            0                           0                  0134433    24678888876   89999999


Q ss_pred             HHHHHHhCCceEEE
Q 017424          222 IMRTLKDYNIQVSY  235 (372)
Q Consensus       222 i~~~L~~~~~~I~~  235 (372)
                      +.++|++.|+||..
T Consensus       116 ~f~aLa~~~InI~~  129 (181)
T 3s1t_A          116 FCEALAAVGVNIEL  129 (181)
T ss_dssp             HHHHHHHTTCCCCE
T ss_pred             HHHHHHHCCCcEEE
Confidence            99999999999986

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.37  E-value=0.3  Score=50.43  Aligned_cols=162  Identities=17%  Similarity=0.246  Sum_probs=106.1

Q ss_pred             CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEE---EEEEec-----------cCC-----C-C--------
Q 017424           18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASVV---LYYRAE-----------MQA-----P-K--------   66 (372)
Q Consensus        18 ~~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~t---~f~v~d-----------~~~-----~-~--------   66 (372)
                      .+...|.+++.   .+||..+++..+|.+.|.||.-..-+.   ++.+.+           ..|     + .        
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~  432 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTLSPPKNQTDTSHL  432 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCBCCCCCCCC---C
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccCCCcccccccccc
Confidence            45678999984   799999999999999999987543111   144442           011     1 0        


Q ss_pred             --------CCceEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeC---CCe-EEE-EEEEEcCCCCCCCHhHHHH
Q 017424           67 --------PSDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTP---DGK-VMD-LFFVTDTRELLHTRKRKED  132 (372)
Q Consensus        67 --------~~~~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~---~~~-~~D-vF~V~~~~g~~~~~~~~~~  132 (372)
                              ..+...|++.. +|+||+.++|.+.|++.|+||.--......   +|. .-| .|.|..        +..++
T Consensus       433 ~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--------~d~~~  504 (600)
T 3l76_A          433 PAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--------GDSSQ  504 (600)
T ss_dssp             CSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--------HHHHH
T ss_pred             CceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--------HHHHH
Confidence                    12456777765 899999999999999999999644332221   231 223 365533        22334


Q ss_pred             HHHHHHHHHcccccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEE
Q 017424          133 TYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC  212 (372)
Q Consensus       133 l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~  212 (372)
                      ..+.|++ +..+.                      .                       ..+|.++    ++...|.+.|
T Consensus       505 a~~~l~~-~~~~~----------------------~-----------------------~~~v~~~----~~~akVSiVG  534 (600)
T 3l76_A          505 AEAILQP-LIKDW----------------------L-----------------------DAAIVVN----KAIAKVSIVG  534 (600)
T ss_dssp             HHHHHHH-HTTTS----------------------T-----------------------TCEEEEE----CCEEEEEEEC
T ss_pred             HHHHHHH-HHHhc----------------------C-----------------------CceEEEe----CCeEEEEEEC
Confidence            4344443 22111                      0                       1134443    3578888887


Q ss_pred             ---CCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          213 ---QDHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       213 ---~DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                         ..+||..+.+.++|++.|+||..  |+
T Consensus       535 ~GM~~~~Gvaa~~f~aL~~~~Ini~m--is  562 (600)
T 3l76_A          535 SGMIGHPGVAAHFFAALAQENINIEM--IA  562 (600)
T ss_dssp             GGGTTCTTHHHHHHHHHHTTTCCCCE--EE
T ss_pred             cccccCccHHHHHHHHHHHCCCceEE--EE
Confidence               59999999999999999999985  55

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.27  E-value=0.0079  Score=53.94  Aligned_cols=62  Identities=23%  Similarity=0.269  Sum_probs=43.5

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC----CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~----~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ...|.+.+.||||+|++|+++|++++.||...+..+..    ++.+.-.+.+.+.        .++++.+.|++
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--------~Le~LL~kLrk   69 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--------DFEKILERVKT   69 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--------CHHHHHHHHHT
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--------CHHHHHHHHhC
Confidence            36789999999999999999999999999999997755    5665444555432        24566666655

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.26  E-value=0.017  Score=50.89  Aligned_cols=65  Identities=12%  Similarity=0.238  Sum_probs=48.8

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  140 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~  140 (372)
                      ...|+|...|+||.|++|+++|+..|+||.+-.+..+.+ +..--++.|...      +..+++|.+.|.+.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCc
Confidence            468999999999999999999999999999988865544 555445566432      33456777766653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.93  E-value=0.034  Score=47.35  Aligned_cols=59  Identities=15%  Similarity=0.285  Sum_probs=43.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .|+|.+.||+|||++|+++|+++++||..+.+.+  +|.    +++.-+.   .+.+....+...+.+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~--~g~----i~~~~~~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--IGR----IYLNFAE---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET--TTE----EEEEECC---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec--CCE----EEEEEEe---CCHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999943  354    3333221   234455666666655

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.56  E-value=0.049  Score=48.02  Aligned_cols=66  Identities=8%  Similarity=0.185  Sum_probs=46.2

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ...|+|...|+||.|++|+.+|++.|+||.+-.+.. |.. +...-++.++.      ++...+.|.++|.+.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~-ted~gisRitIvV~g------~e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGE-SETPGLSRLVIMVKG------DDKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEE-CSSTTEEEEEEEEEE------CTTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeec-cCCCCEEEEEEEEEC------CHHHHHHHHHHhcCcC
Confidence            478999999999999999999999999999855541 222 22232334432      1345778888876544

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.43  E-value=0.14  Score=44.59  Aligned_cols=110  Identities=17%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             CeeEEEEE-ECCcchHHHHHHHHHHhCCceEEEEEEeee-ec--CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          204 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRR-QR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       204 ~~tvi~v~-~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~-t~--g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      +.+.|+|. -.|+||.+++|..+|++.|+||..  |+.+ +.  .+...-.|++..+     +.++..++-+.+...+. 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~--I~q~~s~~~~g~~~isftv~~~-----~~~~a~~~L~~~~~el~-   86 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIG-   86 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCC--EEECCCCTTTCEEEEEEEEETT-----THHHHHHHHHHTHHHHC-
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEE--EEecCCcccCCccEEEEEEehh-----HHHHHHHHHHHHHHhcC-
Confidence            45666664 469999999999999999999985  4311 11  2334456666521     22222222222333332 


Q ss_pred             CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEE
Q 017424          280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  329 (372)
Q Consensus       280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~  329 (372)
                      ...+.+. .+       ...+.+.|.   ++||+...+..+|.+.|+||....
T Consensus        87 ~~~v~~~-~~-------va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           87 FSQLLYD-DH-------IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             CSEEEEE-SC-------EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             cceEEEe-CC-------EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            2222221 11       135777775   899999999999999999996655

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.42  E-value=0.16  Score=45.00  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             CceEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEee--CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccc
Q 017424           68 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTT--PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  144 (372)
Q Consensus        68 ~~~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~--~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~  144 (372)
                      .+...|++.+ +|+||++++|.+.|++.|+||.---....  .++...-.|.+...        ..++..+.|.+ +..+
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~--------d~~~~~~~l~~-~~~~  103 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--------VGPAAVEKLDS-LRNE  103 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG--------GHHHHHHHHHT-THHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh--------hHHHHHHHHHH-HHhh
Confidence            4567888876 89999999999999999999986433211  13344445766431        12222222222 1110


Q ss_pred             ccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEE---CCcchHHHH
Q 017424          145 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYD  221 (372)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~---~DRpGLL~~  221 (372)
                                                + .                  ...|.++    ++...|.+.|   +.+||+...
T Consensus       104 --------------------------~-~------------------~~~v~~~----~~iakVSvVG~GM~~~~GVaak  134 (200)
T 4go7_X          104 --------------------------I-G------------------FSQLLYD----DHIGKVSLIGAGMRSHPGVTAT  134 (200)
T ss_dssp             --------------------------H-C------------------CSEEEEE----CCEEEEEEEEESCTTCHHHHHH
T ss_pred             --------------------------h-c------------------eeeEEEe----cCeeeeeeeccccccCCCcHHH
Confidence                                      0 0                  0123333    2345566655   589999999


Q ss_pred             HHHHHHhCCceEEEEEEe
Q 017424          222 IMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       222 i~~~L~~~~~~I~~a~i~  239 (372)
                      +..+|++.|+||..  |+
T Consensus       135 ~F~aLa~~~INI~m--Is  150 (200)
T 4go7_X          135 FCEALAAVGVNIEL--IS  150 (200)
T ss_dssp             HHHHHHHTTCCCCE--EE
T ss_pred             HHHHHHHCCCCEEE--EE
Confidence            99999999999995  55

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.29  E-value=0.83  Score=44.88  Aligned_cols=109  Identities=22%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             ceEEEEEE-eCCCCcHHHHHHHHHHhCCceEEEEEEEeeC--CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424           69 DVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        69 ~~~~i~v~-~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~--~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~  145 (372)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||.--...|..  +|..-=.|.|...+        .++..+.|++ +..+.
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~--------~~~a~~~l~~-~~~~~  333 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD--------GRRAMEILKK-LQVQG  333 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT--------HHHHHHHHHH-HHTTT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh--------HHHHHHHHHH-HHHHc
Confidence            45678887 5899999999999999999999866543332  34333346664311        1223333443 22111


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC---CcchHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI  222 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i  222 (372)
                                            .                       ...|.++    .+..++.|.|.   ++||.+..+
T Consensus       334 ----------------------~-----------------------~~~v~~~----~~~a~vsvVG~gm~~~~Gv~a~~  364 (421)
T 3ab4_A          334 ----------------------N-----------------------WTNVLYD----DQVGKVSLVGAGMKSHPGVTAEF  364 (421)
T ss_dssp             ----------------------T-----------------------CSEEEEE----CCEEEEEEECGGGTSCTTHHHHH
T ss_pred             ----------------------C-----------------------CceEEEe----CCeEEEEEEccCcccCccHHHHH
Confidence                                  0                       0123333    35688888886   899999999


Q ss_pred             HHHHHhCCceEEE
Q 017424          223 MRTLKDYNIQVSY  235 (372)
Q Consensus       223 ~~~L~~~~~~I~~  235 (372)
                      ..+|.+.|+||..
T Consensus       365 f~aL~~~~InI~~  377 (421)
T 3ab4_A          365 MEALRDVNVNIEL  377 (421)
T ss_dssp             HHHHHHTTCCCCE
T ss_pred             HHHHHHCCCCEEE
Confidence            9999999999984

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.14  E-value=0.034  Score=49.87  Aligned_cols=36  Identities=11%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEee
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  240 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~  240 (372)
                      ...|++.+.||||+|++|+++|+++++||......+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~   39 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL   39 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence            367889999999999999999999999999877763

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.50  E-value=0.11  Score=46.00  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=67.4

Q ss_pred             CCeeEEEEEE-CCcchHHHHHHHHHHhCCceEEEEEEeee--ec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          203 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRR--QR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       203 ~~~tvi~v~~-~DRpGLL~~i~~~L~~~~~~I~~a~i~~~--t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      .+.+.|+|.+ +|+||++++|..+|++.|+||..  |..+  .. .....-.|.+..     .+.++..++.+.+...+.
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDm--I~Qs~s~~~~~~~~~sftv~~-----~d~~~~~~~l~~~~~~~~  105 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSR-----DVGPAAVEKLDSLRNEIG  105 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCC--EECCCCC--CCEEEEEEEEEG-----GGHHHHHHHHHTTHHHHC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEE--EeeccccccccceEEEEecch-----hhHHHHHHHHHHHHhhhc
Confidence            4567777765 79999999999999999999985  5311  11 123334555542     122222333333333332


Q ss_pred             CCceEEEeecCCCcceeeeeeEEEEe---CCCCchHHHHHHHHHhCCeEEEEE
Q 017424          279 QPLRVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSA  328 (372)
Q Consensus       279 ~~~~v~i~~~g~~~~~~~~~~~~v~~---~DRpgll~dvt~~L~~~~~~V~~a  328 (372)
                      . ..+.+. .+       ...+.+.|   +.+||+...+-.+|.+.|+||..-
T Consensus       106 ~-~~v~~~-~~-------iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI  149 (200)
T 4go7_X          106 F-SQLLYD-DH-------IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI  149 (200)
T ss_dssp             C-SEEEEE-CC-------EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             e-eeEEEe-cC-------eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence            1 122211 11       12466666   689999999999999999999433

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=93.67  E-value=0.64  Score=45.70  Aligned_cols=107  Identities=18%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             CeeEEEEE-ECCcchHHHHHHHHHHhCCceEEEEEEeeeec---CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424          204 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  279 (372)
Q Consensus       204 ~~tvi~v~-~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~---g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~  279 (372)
                      +.+.|+|. -.|+||.+++|...|++.|+||..  |+.++.   .+...=.|.+..     .+.++..++-+.+...+..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~--I~q~~s~~~~g~~~isf~v~~-----~~~~~a~~~l~~~~~~~~~  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDM--VLQNVFSVEDGTTDITFTCPR-----SDGRRAMEILKKLQVQGNW  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEE--EEECCCC--CCEEEEEEEEET-----TTHHHHHHHHHHHHTTTTC
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEE--EEccCccccCCcceEEEEEec-----hhHHHHHHHHHHHHHHcCC
Confidence            56778888 589999999999999999999996  431121   122333456652     1232222222223222221


Q ss_pred             CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEE
Q 017424          280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIF  326 (372)
Q Consensus       280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~  326 (372)
                       ..+.+. .+       ...+.+.|.   ++||++..+..+|.+.|+||.
T Consensus       336 -~~v~~~-~~-------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~  376 (421)
T 3ab4_A          336 -TNVLYD-DQ-------VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE  376 (421)
T ss_dssp             -SEEEEE-CC-------EEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC
T ss_pred             -ceEEEe-CC-------eEEEEEEccCcccCccHHHHHHHHHHHCCCCEE
Confidence             122221 11       135778884   899999999999999999996

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.63  E-value=0.31  Score=45.48  Aligned_cols=92  Identities=12%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             hCCCeEEEEEE------EEEEEEeccCC-C--------CC--CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424           43 FFGLSIVRGAS------VVLYYRAEMQA-P--------KP--SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  105 (372)
Q Consensus        43 ~~~lnI~~a~i------~t~f~v~d~~~-~--------~~--~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T  105 (372)
                      .+||+|+...|      .|.|++.-+.. +        .+  ..-+.|.+..+|+||-|+++-+.|+.+|+|+.+-.-.-
T Consensus       156 ~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP  235 (283)
T 2qmx_A          156 LYGLDILKENLADEEWNITRFFCIAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRP  235 (283)
T ss_dssp             HTTCEEEESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred             HcCCceecccCcCCCCCeeeEEEEecCccccccccccCCCCCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeE
Confidence            36888887777      23377764222 1        11  23456666668999999999999999999999887765


Q ss_pred             eCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424          106 TPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus       106 ~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..++...-.|||. -+|..-+    +.+++.|.+
T Consensus       236 ~~~~~~~Y~FfvD-~eg~~~d----~~v~~aL~~  264 (283)
T 2qmx_A          236 SRKKAFEYLFYAD-FIGHRED----QNVHNALEN  264 (283)
T ss_dssp             CSSSTTEEEEEEE-EESCTTS----HHHHHHHHH
T ss_pred             cCCCCcceEEEEE-EecCCCc----HHHHHHHHH
Confidence            5544334557773 3555322    345555554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.40  E-value=0.5  Score=47.93  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHH
Q 017424          201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS  271 (372)
Q Consensus       201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~  271 (372)
                      ..+.++.+-+.-.|+||.+..|+..|.++|+||...++.....|+.+.-++.++.   ++ +++.+++|++
T Consensus       450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~---~~-~~~~l~~l~~  516 (529)
T 1ygy_A          450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ---DV-PDDVRTAIAA  516 (529)
T ss_dssp             EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS---CC-CHHHHHHHHH
T ss_pred             ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC---CC-CHHHHHHHhc
Confidence            3456788889999999999999999999999999988875445666666666653   34 4555555543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=92.24  E-value=0.89  Score=43.01  Aligned_cols=81  Identities=10%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             hCC-CeEEEEEEE------EEEEEeccCC--CC--CCceEEEEEEeC-CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe
Q 017424           43 FFG-LSIVRGASV------VLYYRAEMQA--PK--PSDVFLLKLSCY-DRKGLLYDVTAVLCELELTIEKVKISTTPDGK  110 (372)
Q Consensus        43 ~~~-lnI~~a~i~------t~f~v~d~~~--~~--~~~~~~i~v~~~-DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~  110 (372)
                      .+| |+|+...|-      |.|++.-+..  +.  ..+-|.|.+..+ |+||-|+++-+.|+.+|+|+.+-.-.-+.++.
T Consensus       163 ~Yg~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~  242 (313)
T 3mwb_A          163 EQPGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL  242 (313)
T ss_dssp             HCTTCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST
T ss_pred             HcCChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCC
Confidence            478 999988883      3388765321  21  234566667775 99999999999999999999877765444332


Q ss_pred             EEEEEEEEcCCCCC
Q 017424          111 VMDLFFVTDTRELL  124 (372)
Q Consensus       111 ~~DvF~V~~~~g~~  124 (372)
                      ..=.|||. -+|..
T Consensus       243 ~~Y~FfiD-~eg~~  255 (313)
T 3mwb_A          243 GHYFFSID-ADGHA  255 (313)
T ss_dssp             TSEEEEEE-EESCT
T ss_pred             ccEEEEEE-EeCCC
Confidence            22347773 35553

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.32  E-value=0.55  Score=46.01  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      +...|.+.-.|+||.+..|+.+|.++|+||......+ .++.++-++.|..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCC
Confidence            4557888899999999999999999999999999976 7788866666643

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=91.08  E-value=1.5  Score=40.46  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=51.2

Q ss_pred             hCCCeEEEEEEE------EEEEEeccCCCCCCceEEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE
Q 017424           43 FFGLSIVRGASV------VLYYRAEMQAPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD  113 (372)
Q Consensus        43 ~~~lnI~~a~i~------t~f~v~d~~~~~~~~~~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D  113 (372)
                      .+||+|+...|-      |.|++.-+..+....-+.|-+..   +|+||-|+++-+.|+.+|+|+.+-.-.-..++...-
T Consensus       153 ~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y  232 (267)
T 2qmw_A          153 AYGFTPIDTHIEDYPHNVTRFLVIKNQQQFDQNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMY  232 (267)
T ss_dssp             GGTCCEEEECCCSCSCCEEEEEEEESCCCCCSSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCE
T ss_pred             HCCCcEeeccccCCCCCceEEEEEecCCCCCCCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccE
Confidence            357777776662      23777642221113445566666   899999999999999999999987776554443334


Q ss_pred             EEEEEc
Q 017424          114 LFFVTD  119 (372)
Q Consensus       114 vF~V~~  119 (372)
                      .|||.-
T Consensus       233 ~FfiD~  238 (267)
T 2qmw_A          233 RFFVQA  238 (267)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            477744

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.56  E-value=1  Score=45.64  Aligned_cols=62  Identities=15%  Similarity=0.135  Sum_probs=46.5

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEcCCCCCCCHhHHHHH
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDT  133 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l  133 (372)
                      +....+.+.-+|+||.+.+|+..|.++|+||...++... .++.++-++.+.+    .++++.+++|
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~----~~~~~~l~~l  514 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ----DVPDDVRTAI  514 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS----CCCHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC----CCCHHHHHHH
Confidence            456788888999999999999999999999999999654 3566765666533    2444444444

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.96  E-value=2  Score=40.84  Aligned_cols=64  Identities=16%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             eEEEEEEC--CcchHHHHHHHHHHhCCceEEEEEEeeeecCC-eEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424          206 TLVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       206 tvi~v~~~--DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~-~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      +.+-+...  |+||-|+++-..|+.+|+|..+  |.+..... ...=.|||+.+|..- |+    .++++|.++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfiD~eg~~~-d~----~v~~AL~~L  273 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTS--FISRPIKGRTGTYSFIVTLDAAPW-EE----RFRDALVEI  273 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEE--EEEEEETTEEEEEEEEEEESSCTT-SH----HHHHHHHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEE--EEeeECCCCCccEEEEEEEeCCcC-CH----HHHHHHHHH
Confidence            43334443  7999999999999999999984  76333333 345578998777652 33    345555443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.92  E-value=0.79  Score=44.87  Aligned_cols=49  Identities=6%  Similarity=0.186  Sum_probs=41.1

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  254 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~  254 (372)
                      ++..|-+.-.|+||.+..|+.+|.++|+||....+.  +.|+.+.-++-++
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~--r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ--TSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE--ECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhcc--CCCCEEEEEEEcC
Confidence            344566888999999999999999999999988877  7788777777665

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=89.56  E-value=1.1  Score=41.87  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCC
Q 017424          204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK  259 (372)
Q Consensus       204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~  259 (372)
                      +.|.|-+.-+|+||-|+++-..|+.+|+|..+  |.+.... ....=.|||+.+|..
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTK--IESRPSRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTEEEEEEEEESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeE--EEeeEcCCCCcceEEEEEEecCC
Confidence            45677777789999999999999999999995  7632222 235668899877765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.36  E-value=1.5  Score=43.16  Aligned_cols=48  Identities=15%  Similarity=0.174  Sum_probs=40.4

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      ++...|.+.-.|.||.|.+|..+|+++|+||..-...| .++.+   |.+.|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~-~~~~~---y~~~d  388 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT-DGEVG---YLVME  388 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSSCE---EEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC-CCceE---EEEEE
Confidence            35689999999999999999999999999999888755 57777   44444

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.53  E-value=1.5  Score=43.53  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             CeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424          204 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  280 (372)
Q Consensus       204 ~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~  280 (372)
                      +.+.|+|.+   .+.||.+++|..+|++.+++|..  |+  + +. ..-.|.+..+  .+.  ...+++.+.|...+. .
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~--~-~~-~~is~~V~~~--d~~--~~~~~~~~el~~~~~-~  365 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MP--S-GV-DSVSLVIEDC--KLD--GKCDKIIEEIKKQCN-P  365 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BC--E-ET-TEEEEEEEHH--HHT--TTHHHHHHHHHHHSC-C
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--Ee--c-CC-CEEEEEEecc--hHH--HHHHHHHHHHHHhcC-C
Confidence            567899987   58999999999999999999985  44  2 11 1234666521  010  023445555554443 1


Q ss_pred             ceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424          281 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  331 (372)
Q Consensus       281 ~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i~  331 (372)
                      ..+.+..        -...+.+.|.   .+||+...+..+|.+.|+||..-.-+
T Consensus       366 ~~v~v~~--------~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqg  411 (446)
T 3tvi_A          366 DSIEIHP--------NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQG  411 (446)
T ss_dssp             SEEEEEE--------EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcEEEeC--------CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEec
Confidence            1222211        1236788885   58999999999999999999554443

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=86.90  E-value=2.3  Score=42.18  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             CeEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEE--E-EEEecc---------------CCC-----CCCceEE
Q 017424           19 DPCVITVNC---PDKTGLGCDLCRIILFFGLSIVRGASVV--L-YYRAEM---------------QAP-----KPSDVFL   72 (372)
Q Consensus        19 ~~~~v~v~~---~Dr~GL~~~i~~~l~~~~lnI~~a~i~t--~-f~v~d~---------------~~~-----~~~~~~~   72 (372)
                      +.+.|++.+   ++.+|..+++.+.|+++|+||.--....  . |.+.+.               .+.     ...+...
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~  376 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMAL  376 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEE
Confidence            345677775   6999999999999999999997432111  1 666430               011     1235678


Q ss_pred             EEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424           73 LKLSCY---DRKGLLYDVTAVLCELELTIEKVKI  103 (372)
Q Consensus        73 i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I  103 (372)
                      |.++|.   ..||+.+++.++|++.|+||....-
T Consensus       377 VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          377 VATVGTGMAKTKGIANKIFTALSKENVNIRMIDQ  410 (446)
T ss_dssp             EEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEECCCccCChhHHHHHHHHHHHCCCCEEEEEe
Confidence            999985   5899999999999999999986553

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=86.84  E-value=2.1  Score=40.48  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=41.0

Q ss_pred             CCeeEEEEEEC-CcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCC
Q 017424          203 PGHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK  259 (372)
Q Consensus       203 ~~~tvi~v~~~-DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~  259 (372)
                      .+.|.|-+.-+ |+||-|+++-..|+.+|+|..+  |.+.... ....=.|||+.+|..
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfiD~eg~~  255 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSR--IESRPTGQYLGHYFFSIDADGHA  255 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTSEEEEEEEESCT
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEE--EEEeecCCCCccEEEEEEEeCCC
Confidence            35677777775 9999999999999999999984  6632222 223458899877765

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=86.39  E-value=1.9  Score=43.52  Aligned_cols=109  Identities=13%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             CeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec-CCCCCC-ChhHHHHHHHHHHHHhc
Q 017424          204 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA-DGKKIV-DPSKQNGLSSRLWMELL  278 (372)
Q Consensus       204 ~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~-~g~~l~-~~~~~~~l~~~L~~~l~  278 (372)
                      +.+.|+|.+   .++||.+++|..+|+++|++|..  |.++    ...=.|++.. +..+.. ..+.++++    .+.+.
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~--I~ss----e~sis~~v~~~~~~~~~~~~~~l~~~----~~el~  409 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDV--VATS----EVSISLTLDPSKLWSRELIQQELDHV----VEELE  409 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEE--EEEE----TTEEEEEECCGGGSSSCCCHHHHHHH----HHHHT
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEE--EEeC----CCeEEEEEechHhhhhhHHHHHHHHH----HHHhC
Confidence            578899987   68999999999999999999996  5522    1222456642 211110 12223333    33333


Q ss_pred             CCceEEEeecCCCcceeeeeeEEEEeC--CCCchHHHHHHHHHhCCeEEEEEEE
Q 017424          279 QPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEI  330 (372)
Q Consensus       279 ~~~~v~i~~~g~~~~~~~~~~~~v~~~--DRpgll~dvt~~L~~~~~~V~~a~i  330 (372)
                      ....+.+. .+       ...+.+.|.  .+||+...+..+|.+.|+||..-.-
T Consensus       410 ~~~~v~~~-~~-------~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsq  455 (510)
T 2cdq_A          410 KIAVVNLL-KG-------RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQ  455 (510)
T ss_dssp             TTSEEEEE-EE-------EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred             CCCeEEEe-CC-------cEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEe
Confidence            21223321 11       235777887  7899999999999999999954433

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=85.81  E-value=2.4  Score=39.04  Aligned_cols=52  Identities=27%  Similarity=0.428  Sum_probs=39.7

Q ss_pred             CCeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecC
Q 017424          203 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQAD  256 (372)
Q Consensus       203 ~~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~  256 (372)
                      .+.|.|-+..   .|+||-|+++-..|+.+|+|..+  |.+.... ....=.|||+.+
T Consensus       184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTCEEEEEEES
T ss_pred             CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeE--EEEeecCCCCccEEEEEEEe
Confidence            4567777777   89999999999999999999995  7632222 234568899865

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=84.82  E-value=5.3  Score=37.91  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=39.6

Q ss_pred             CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           79 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        79 DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      |+||-|+++-+.|+.+|+|+.+-.-.-+.++...=+||| |-+|..-+    ..++++|++
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d----~~v~~AL~~  272 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWE----ERFRDALVE  272 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTS----HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCC----HHHHHHHHH
Confidence            799999999999999999999877765555444456776 44665433    234444444

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=84.80  E-value=1.8  Score=36.20  Aligned_cols=100  Identities=14%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424          204 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  280 (372)
Q Consensus       204 ~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~  280 (372)
                      +.+.|+|.+.   |+||.++++..+|++.|+||..  |+  +...  .=.|++..+     +  +.+++.+.|    ...
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~--I~--~s~~--~Isf~v~~~-----~--~~~~il~~l----~~~   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDM--VA--TSEV--GVSLTIDND-----K--NLPDIVRAL----SDI   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSC--EE--CCSS--EEEEEESCC-----T--THHHHHHHH----TTT
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEE--EE--ecCC--EEEEEECCh-----H--HHHHHHHHH----hcc
Confidence            5678888854   7999999999999999999985  55  2221  234555421     1  223333333    222


Q ss_pred             ceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEE
Q 017424          281 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI  330 (372)
Q Consensus       281 ~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i  330 (372)
                      ..+.+. .+       ...+.+.|.   ++||+...+..+|.  |++|..-.-
T Consensus        80 ~~v~~~-~~-------~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isq  122 (157)
T 3mah_A           80 GDVTVD-KD-------MVIICIVGDMEWDNVGFEARIINALK--GVPVRMISY  122 (157)
T ss_dssp             EEEEEE-EE-------EEEEEEEC------CCHHHHHHHTTT--TSCCSEEEE
T ss_pred             CeEEEe-CC-------eEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEee
Confidence            222221 11       135777775   68999999999999  888854443

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=82.91  E-value=23  Score=35.56  Aligned_cols=108  Identities=14%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             ceEEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424           69 DVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  145 (372)
Q Consensus        69 ~~~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~  145 (372)
                      +.+.|+|.+   .++||++++|.++|+++|+||..-.  |.....   .|.|...+....+. ..+.++. +.+.|..  
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--sse~si---s~~v~~~~~~~~~~-~~~~l~~-~~~el~~--  410 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEVSI---SLTLDPSKLWSREL-IQQELDH-VVEELEK--  410 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETTEE---EEEECCGGGSSSCC-CHHHHHH-HHHHHTT--
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eCCCeE---EEEEechHhhhhhH-HHHHHHH-HHHHhCC--
Confidence            456788886   6899999999999999999998763  332222   25553321110000 0111111 1111111  


Q ss_pred             cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC--CcchHHHHHH
Q 017424          146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYDIM  223 (372)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~--DRpGLL~~i~  223 (372)
                                                                    -..|.++    .+..+|.+.|.  ..||+...+.
T Consensus       411 ----------------------------------------------~~~v~~~----~~~a~VsiVG~m~~~~Gvaa~~f  440 (510)
T 2cdq_A          411 ----------------------------------------------IAVVNLL----KGRAIISLIGNVQHSSLILERAF  440 (510)
T ss_dssp             ----------------------------------------------TSEEEEE----EEEEEEEEEECGGGHHHHHHHHH
T ss_pred             ----------------------------------------------CCeEEEe----CCcEEEEEEEECCCChhHHHHHH
Confidence                                                          0123332    24678888887  8899999999


Q ss_pred             HHHHhCCceEEE
Q 017424          224 RTLKDYNIQVSY  235 (372)
Q Consensus       224 ~~L~~~~~~I~~  235 (372)
                      .+|.+.|+||..
T Consensus       441 ~aL~~~~InI~m  452 (510)
T 2cdq_A          441 HVLYTKGVNVQM  452 (510)
T ss_dssp             HHHHHHTCCCSE
T ss_pred             HHHHHCCCCEEE
Confidence            999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.66
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.64
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.5
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.29
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.08
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.0
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.62
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.6
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.6
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.43
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.37
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.27
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.23
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.19
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.15
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.13
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.89
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.75
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	96.74
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.64
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.51
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.48
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.44
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.14
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.47
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	91.67
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	87.39
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	85.78
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.75
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.42
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	83.57
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.1
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	81.93

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.66  E-value=9.4e-08  Score=72.26  Aligned_cols=65  Identities=12%  Similarity=0.181  Sum_probs=52.8

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      .+.++|++.|+||||++++++++|+++|+||.+++..+. ++.+.-.+.|.-      ++..++++++.|.+
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~-~~~~~~~~~v~~------~~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF-GKEFTLLMLISG------SPSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEE------CHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE-CCeeEEEEEEEc------CcccHHHHHHHHHH
Confidence            357899999999999999999999999999999999665 566665666643      24556778877776

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.64  E-value=1.7e-07  Score=70.80  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=57.5

Q ss_pred             CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC-Cc
Q 017424          203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-PL  281 (372)
Q Consensus       203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~-~~  281 (372)
                      ..+++|++.|+||||++++++++|+++|+||..++..  +.++...-.+.+..      ++...++|++.|..+-+. .+
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~--~~~~~~~~~~~v~~------~~~~~~~l~~~L~~l~~~l~l   74 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA--MFGKEFTLLMLISG------SPSNITRVETTLPLLGQQHDL   74 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEE------CHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeE--EECCeeEEEEEEEc------CcccHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999998887  77886655555552      234567788877654332 34


Q ss_pred             eEEEee
Q 017424          282 RVTVVS  287 (372)
Q Consensus       282 ~v~i~~  287 (372)
                      .+.+..
T Consensus        75 ~i~~~~   80 (86)
T d1u8sa1          75 ITMMKR   80 (86)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444433

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.50  E-value=5.3e-07  Score=67.42  Aligned_cols=63  Identities=14%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ++|++.|+||||++++++++|+++|+||.+....+. ++.+.-.+.+.-+.+.  +   .+++++.|.+
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~-~~~f~~~~~v~~~~~~--~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSDEKQ--D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEESSCC--C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe-CCEEEEEEEEEEecCC--C---HHHHHHHHHH
Confidence            589999999999999999999999999999999765 5655445555443221  2   4667777766

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.29  E-value=4.1e-06  Score=62.40  Aligned_cols=64  Identities=11%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      ++|++.|+||||++++++.+|+++|+||.+..-.  +.++...-.+.+..++..  +   .++|++.|...
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~--~~~~~f~~~~~v~~~~~~--~---~~~l~~~l~~l   66 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQT--VLDEYFTMMAVVSSDEKQ--D---FTYLRNEFEAF   66 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEESSCC--C---HHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeE--EeCCEEEEEEEEEEecCC--C---HHHHHHHHHHH
Confidence            6899999999999999999999999999987665  556643333344422211  2   35677776543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.08  E-value=6.5e-06  Score=62.67  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=42.4

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC----CeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG----NCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWME  276 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g----~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~  276 (372)
                      .-|+|.|+|||||+++|+++|+++|+||.+..-.  +..    +...+.|.++  .+. |  +...++.|++.|...
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~--~~~a~~~~~~~~~f~~~~~~~~-p--~~~~~~~l~~~l~~l   78 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ--TISKDKLHSEQNQFHIAISARV-D--SGCNLMQLQEEFDAL   78 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE--EEC--------CEEEEEEEEEE-C--TTSCHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcc--cccccCCcccCccEEEEEEEEc-C--ccccHHHHHHHHHHH
Confidence            4577889999999999999999999999975543  433    2344567654  111 1  112345666666543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.00  E-value=8.4e-06  Score=62.02  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT  106 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~  106 (372)
                      ...|+|.|+|||||+++|+++|+++|+||.+..-.+.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~   42 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI   42 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccc
Confidence            4578899999999999999999999999999887553

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.62  E-value=5.9e-05  Score=55.17  Aligned_cols=63  Identities=21%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeE--EEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV--MDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~--~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..|.+.+.||||+|++|+.+++++++||......+..+|.+  .-.|++.+...      .++++-+.|++
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~------~l~~ll~kL~~   66 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG------DFEKILERVKT   66 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS------CHHHHHHHHHT
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc------cHHHHHHHHHc
Confidence            45889999999999999999999999999999877666653  33455544221      14566555554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.60  E-value=0.00019  Score=51.48  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=41.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  119 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~  119 (372)
                      +|.|.-+|+||-|++++++|.+.|+||.....+.+ +++.+-+|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~-~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN-NNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE-TTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC-CCcEEEEEEECC
Confidence            47788899999999999999999999999999876 578888888754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00024  Score=51.91  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEE
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  253 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v  253 (372)
                      .+.+-+.-.||||.|..|+.+|.+.|+||....+.....|+.+.-++.+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            4677888899999999999999999999999888755566666555555

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=0.00053  Score=49.94  Aligned_cols=48  Identities=19%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEE
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV  117 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V  117 (372)
                      ...+.+.-.|+||.+++|+++|+++|+||...++.+.. +|.++-++.+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            46778888999999999999999999999999986543 5566555554

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.37  E-value=0.00014  Score=53.00  Aligned_cols=63  Identities=13%  Similarity=0.257  Sum_probs=38.9

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      .-|.|.+.||||+|.+|+.+|+++++||.+....+...| ....-.|++...+      .++++|.+.|.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~------~~l~~ll~kL~   65 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG------GDFEKILERVK   65 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS------SCHHHHHHHHH
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCc------ccHHHHHHHHH
Confidence            458899999999999999999999999998665532233 1233344554211      12566666664

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.27  E-value=0.00061  Score=48.74  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424          207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  254 (372)
Q Consensus       207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~  254 (372)
                      +|.|.-+||||-|++++++|.+.|+||++....  ..++.+.-.|.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~--~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF--ANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE--EETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEE--cCCCcEEEEEEEC
Confidence            578889999999999999999999999997776  5577777666653

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00064  Score=49.48  Aligned_cols=64  Identities=11%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  139 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~  139 (372)
                      ..|.+...|+||+|++|++.|+..|+||.+-.+..+.+.-.-.+-.+..  |   +++..+++.+.|.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~--g---~~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK--G---DDKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE--E---CTTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE--c---CHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999987665543322222222  1   13345667666665

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0008  Score=48.68  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      .+.+...|+||+|++|++.|+..|+||.+-.+.-+.+...--+-.+..  |   +++.++++.+.|.+..
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~--~---~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G---DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCCC
Confidence            578889999999999999999999999999987555443322222222  1   3556777877777743

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.15  E-value=0.001  Score=47.37  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=37.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424           72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  117 (372)
Q Consensus        72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V  117 (372)
                      .|.|...||||.|++++++|++.|+||.+-.+..+. +..+--|.|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~-~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA-DFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS-SCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecC-CCCEEEEEE
Confidence            588999999999999999999999999999997654 555445544

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.13  E-value=0.00069  Score=49.18  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424           71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  141 (372)
Q Consensus        71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L  141 (372)
                      ..|.+...|+||.|++|++.|+..|+||.+-.+.-+.+ |..--++.+..      +++.++++.+.|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCCc
Confidence            36788999999999999999999999999999975544 33333343332      2556777888877743

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0043  Score=45.50  Aligned_cols=61  Identities=7%  Similarity=0.125  Sum_probs=43.2

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  274 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~  274 (372)
                      ..|.+.-.|+||.|.+|+.+|.+.|+||.+-...  +.++.+...-.+..      |.+..+++.++|.
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~--~~~~~~~a~~~i~~------D~~~~~~v~~~i~   72 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ--TSAQMGYVVIDIEA------DEDVAEKALQAMK   72 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE--ECSSEEEEEEEEEC------CHHHHHHHHHHHH
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccc--cCCCCcEEEEEEEC------CCCCHHHHHHHHH
Confidence            4666678999999999999999999999987666  66655444333332      3334455666654

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.0039  Score=45.12  Aligned_cols=67  Identities=9%  Similarity=0.236  Sum_probs=47.6

Q ss_pred             eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      ...|.+...|+||+|..|+..|+..|+||.+-.+.  ........-+-+..+|    +++..+++..+|.+.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~--~te~~~iSR~tivv~g----~~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVG--ESETPGLSRLVIMVKG----DDKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE--ECSSTTEEEEEEEEEE----CTTHHHHHHHHHTTST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEe--ecCCCCeEEEEEEEEc----CHHHHHHHHHHHhCCc
Confidence            35788999999999999999999999999986665  3333344444333222    2346778888876544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.74  E-value=0.0027  Score=45.04  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEE
Q 017424          208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  253 (372)
Q Consensus       208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v  253 (372)
                      |.|...||||.|++++.+|++.|+||.+-.+.  ...+.+.-.|.+
T Consensus         6 isV~~eNkpG~L~~v~~~~~~~~inI~sl~v~--~t~~~~i~Riiv   49 (70)
T d2f06a2           6 LSIFLENKSGRLTEVTEVLAKENINLSALCIA--ENADFGILRGIV   49 (70)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE--ECSSCEEEEEEE
T ss_pred             EEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEe--ecCCCCEEEEEE
Confidence            77889999999999999999999999986655  445555444444

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.64  E-value=0.0044  Score=44.76  Aligned_cols=67  Identities=6%  Similarity=0.136  Sum_probs=48.2

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ..|.+...|+||+|..|+..|+..|+||.+-.+.  ........-+-+..+|    +++..+++..+|.+.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~--~te~~~iSRmtivv~~----~~~~i~qi~kQL~Klvd   69 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVA--PTEDPTLSRMTLVTNG----PDEIVEQITKQLNKLIE   69 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEE--ECSSTTEEEEEEEEEE----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEe--ccCCCCeEEEEEEEEC----CHHHHHHHHHHHhCCcC
Confidence            4678889999999999999999999999986665  2223333344333222    45678889999876654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.51  E-value=0.002  Score=48.79  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=49.8

Q ss_pred             CCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424          199 NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  277 (372)
Q Consensus       199 ~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l  277 (372)
                      +....+.|-|-+...|+||-|+++-..|+++|+|+.+  |.+... +....=.|||+.+|..  ++ ..+.+.+.|...+
T Consensus        10 ~~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~--IeSRP~~~~~~~Y~F~id~eg~~--~~-~i~~~l~~L~~~~   84 (97)
T d1phza1          10 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTH--IESRPSRLNKDEYEFFTYLDKRT--KP-VLGSIIKSLRNDI   84 (97)
T ss_dssp             CCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTS--EEEEECSSCTTEEEEEECBCGGG--HH-HHHHHHHHHHHTT
T ss_pred             CCCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEE--EEeeccCCCCceEEEEEEcccCC--hH-HHHHHHHHHHHhh
Confidence            3444567888888899999999999999999999984  653222 2223446899877753  33 3455555554433

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.003  Score=45.51  Aligned_cols=67  Identities=9%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      ..+.+...|+||+|..|+..|+..|+||.+-.+.  ........-|-+...|    +++..+++..+|.+.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~--~te~~~iSR~tivv~~----~~~~i~qi~kQL~Klid   68 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVA--PTDDPTLSRMTIQTVG----DEKVLEQIEKQLHKLVD   68 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE--ECSCSSEEEEEEEEES----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEc--ccCCCCeeEEEEEEEC----CHHHHHHHHHHHhCCCC
Confidence            3578888999999999999999999999986665  3333444445443222    45678889888876653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.012  Score=42.95  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=33.5

Q ss_pred             eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC
Q 017424           70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP  107 (372)
Q Consensus        70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~  107 (372)
                      ...+.+.-.|+||.+++|+++|+++|+||.+....+..
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~   48 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSA   48 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCC
Confidence            35788888999999999999999999999999886643

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.14  E-value=0.14  Score=36.74  Aligned_cols=49  Identities=27%  Similarity=0.389  Sum_probs=35.8

Q ss_pred             EEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCC
Q 017424          209 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK  259 (372)
Q Consensus       209 ~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~  259 (372)
                      -+.-.|+||-|+++-..|+++|+|+.+  |.+.... ....=.||++.+|..
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~--IeSRP~~~~~~~Y~F~id~~g~~   55 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLGMYRFFVQADSAI   55 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTCEEEEEEESCCS
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEecCC
Confidence            334569999999999999999999995  6632222 224557899877753

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.47  E-value=0.079  Score=39.54  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=39.5

Q ss_pred             CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCC
Q 017424           68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL  123 (372)
Q Consensus        68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~  123 (372)
                      .+-+.|-+..+|+||-|+++-..|+++|+|+..-.-....+....=.||| |-+|.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~   68 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKR   68 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGG
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccC
Confidence            34677778889999999999999999999998766543333322234777 33554

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.67  E-value=0.54  Score=33.39  Aligned_cols=49  Identities=18%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             EEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCC
Q 017424           74 KLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL  123 (372)
Q Consensus        74 ~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~  123 (372)
                      .+...|+||-|+++-+.|+++|+|+.+-.-.-..+....=.|||.- +|.
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~-~g~   54 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA-DSA   54 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE-SCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ecC
Confidence            3344799999999999999999999987765444332223377744 454

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=87.39  E-value=1  Score=33.27  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             ceEEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424           69 DVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  142 (372)
Q Consensus        69 ~~~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~  142 (372)
                      +...|++.|   +++||+.+++..+|++.|+||.--.-.+.  +.- =.|.|...        ..++..+.|.+.+.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~S--e~~-Isf~V~~~--------d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS--ETN-ISLVVSEE--------DVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCT--TCC-EEEEECST--------THHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCC--cce-EEEEEeHH--------HHHHHHHHHHHHHH
Confidence            567899988   68999999999999999999997554222  221 12555331        23455566666664

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.78  E-value=0.44  Score=34.76  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             ceEEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEE
Q 017424           69 DVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVK  102 (372)
Q Consensus        69 ~~~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~  102 (372)
                      +.+.|++.+   +++||+++++..+|++.|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            567899987   4999999999999999999999765

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.75  E-value=1.5  Score=29.71  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=28.4

Q ss_pred             EEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424           71 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI  103 (372)
Q Consensus        71 ~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I  103 (372)
                      ..|.+.|   .++||+.+++..+|++.|+||.--..
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq   37 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQ   37 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeee
Confidence            4677877   58999999999999999999986554

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.42  E-value=1.5  Score=32.26  Aligned_cols=63  Identities=16%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             CeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424          204 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  278 (372)
Q Consensus       204 ~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~  278 (372)
                      +...|.+.|   +++||++..+..+|++.|+||.-  |+  .-.....=.|.|.        .+..++..+.|.+...
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~m--Is--Q~~Se~~Isf~V~--------~~d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL--IS--QGSSETNISLVVS--------EEDVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEE--EE--ECCTTCCEEEEEC--------STTHHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHH--ee--ccCCcceEEEEEe--------HHHHHHHHHHHHHHHH
Confidence            578999998   69999999999999999999995  43  2122233345553        2234455555555543

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.57  E-value=4  Score=29.40  Aligned_cols=66  Identities=8%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             cchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCceEEEeecC
Q 017424          215 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRG  289 (372)
Q Consensus       215 RpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~~v~i~~~g  289 (372)
                      ..-+++++++.+ +..+||.+|.|.  ..++...-.+++...|..   +   +.+.+++...-++.+++++..+|
T Consensus        30 ~~Pvis~l~r~~-~v~vnIL~g~I~--~i~~~~~G~Liv~l~G~~---~---~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          30 TEPIVSSLSTAY-DIKINILEANIK--NTKNGTVGFLVLHIPYIS---S---VDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             HHHHHHHHHHHH-TCCCEEEEEEEE--EETTEEEEEEEEEESCCC---H---HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CchHHHHHHHHh-CCceEEEEEEeE--EeCCeeEEEEEEEEecCC---H---HHHHHHHHHHHHcCCEEEEecCC
Confidence            456999999999 899999999998  778888778888754422   2   33445555455667777665543

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.10  E-value=0.54  Score=34.22  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             CeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEe
Q 017424          204 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFS  239 (372)
Q Consensus       204 ~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~  239 (372)
                      +.+.|.|.+.   ++||+++.+..+|++.|+||.-  |+
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~--Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDV--VA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEE--EE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEE--EE
Confidence            5689999975   9999999999999999999996  55

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=81.93  E-value=3.2  Score=27.98  Aligned_cols=45  Identities=13%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             eEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424          206 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  254 (372)
Q Consensus       206 tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~  254 (372)
                      .+|.+.|   .++||+...+..+|.+.|+||.-  |+  .-.....=.|.|.
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~m--Is--q~~Se~~Is~~V~   49 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKM--IA--QGSSEVNISFVID   49 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCE--EE--ESSCSSEEEEEEE
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHH--ee--ecCccceEEEEEe
Confidence            3567776   59999999999999999999985  43  2122333455665