Citrus Sinensis ID: 017450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIFLDADIQQN
Secondary Structure (PSIPRED)
cccccHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEEccccHHHHHHHcccccccEEEccccccccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHccccccccEEEEEEHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccEHHHEccccccccccccccccccccccccccEEcccccHcccHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHcccEEEEEEcHHHHHHHHHcccccccEEEEEccEEEEcHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEEEEEcccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHccccccccc
Coil and Loop (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQmyglssngeragrqnqnrhriaMTTSTLLvfqnpllpkptrpahssiagvQKGAASACIVCARSQDDDYHATIKALnskgrfprkslgqhymlNSEINDQLAAAAAVQEGDivleigpgtgsLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVvanipfnisTDVIkqllpmgdIFSEVVLLLQEETALRlvepslrtseyrpinifvnfysepeykfkvprtnffpqpkvDAAVVTFKlkqatdypavtstkSFFSMVVPLLNVLQFKLltttssfpddsalfvhkniilpsifldadiqqn
Flexible Loop (DISEMBL)
mgelvaevgckslterqVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKalnskgrfprKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRlvepslrtseyrpiNIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPsifldadiqqn
Low Complexity Region (SEG)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIFLDADIQQN
Disordered region (IsUnstruct)
****VAEVGCKSLTERQVVSVIYRILGTYCSQMYGL****************IAMTTSTLLVFQNPLL**********IAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIFLDA*****
Disordered Region (DISOPRED)
**ELVAEVGCKSLTERQVVSVIYRILGTYCSQMY*******************AMTTSTLLVF******************************************KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIFLDA*I***
Disordered Region (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPT***************SACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIFLDADIQQN
Disordered Region (DISPRO)
*GELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGL*************RHRIAMTTSTLLVFQNPLLPKPT********************CARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIIL*S*FL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIFLDADIQQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q6ME80	284	Ribosomal RNA small subun	yes	no	0.557	0.728	0.372	6e-32
Q2RME8	288	Ribosomal RNA small subun	yes	no	0.595	0.767	0.340	9e-28
Q65PH9	292	Ribosomal RNA small subun	yes	no	0.582	0.739	0.348	3e-27
B8D0I2	301	Ribosomal RNA small subun	yes	no	0.638	0.787	0.325	6e-27
Q67JB9	285	Ribosomal RNA small subun	yes	no	0.587	0.764	0.317	7e-27
A8MK56	287	Ribosomal RNA small subun	yes	no	0.544	0.703	0.319	2e-26
Q181C1	289	Ribosomal RNA small subun	yes	no	0.587	0.754	0.302	8e-26
Q823V2	278	Ribosomal RNA small subun	yes	no	0.539	0.719	0.360	9e-26
P37468	292	Ribosomal RNA small subun	yes	no	0.539	0.684	0.341	3e-25
C1CMT3	290	Ribosomal RNA small subun	yes	no	0.536	0.686	0.334	3e-25

>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 16/223 (7%)

Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           LN  G FP+K L Q+++++  I  ++  A+ VQ G++VLEIGPG GSLT  +L   A V+
Sbjct: 13  LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72

Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
           A+EKD     L RE  RF +   QL++  ED +   +   + S    R      AKV+AN
Sbjct: 73  AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125

Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
           +P++++T ++ +++    +FS + +++QEE A R+   P    S+Y    IF+NFYS+P 
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPR 183

Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
           Y F V R  F+P PKVD+A+V  +LK+    P     + FF +
Sbjct: 184 YGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKI 223

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
Protochlamydia amoebophila (strain UWE25) (taxid: 264201)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8EC: 2

>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T+  +  KG  PRKS GQ++++++ I  ++A AA V  GD V+EIGPG G+LT  L    
Sbjct: 10  TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
             V+AIE D+ +   + E  A  D ++++  D +K      +  +    +      KVVA
Sbjct: 70  GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEP 282
           N+P+ I+T ++  LL      +E+VL++Q E   R L  P     +Y  +++ V +Y+EP
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEP 187

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVV 328
               KVPRT F+P+P+VD+ V   KL   T        + FF  VV
Sbjct: 188 AVVLKVPRTVFYPRPEVDSLV--LKLTCRTRPVVQVEDEDFFFRVV 231

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 11/227 (4%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T + LN  G   +KSLGQ++++++ I D++   A V E   V+EIGPG G+LT  L    
Sbjct: 11  TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
             V A E DQ ++ ++ +  +  D + V+ +D +K  +R+ M   F+          VVA
Sbjct: 71  KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
           N+P+ ++T +I +LL        +V++LQ+E A R+  +PS  + EY  ++I V FY+E 
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVV 328
           +    VP+T F PQP VD+AV+   L++    PAV     +FF  VV
Sbjct: 185 KTVMNVPKTVFVPQPNVDSAVIRLTLRKE---PAVAVQDAAFFFQVV 228

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 133/246 (54%), Gaps = 9/246 (3%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K LGQ+++++  I D++   A +   DIV+EIGPG GSLT  ++     V A EKD+ +V
Sbjct: 24  KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83

Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
            ++RE F   + L+V+ +D ++   +      F+ R  S    KV+AN+P+ I+T VI  
Sbjct: 84  KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139

Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
           LL     FS +VL++Q+E A R+   +  + +Y  +++ V +Y E E   KVP T F P+
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPR 198

Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKN 356
           P+V ++++  K      Y  V +   FF MV     + Q +  T  +S    S + + K 
Sbjct: 199 PRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRA---IFQQRRKTLKNSLTKSSEIKLDKG 254

Query: 357 IILPSI 362
           I+  +I
Sbjct: 255 IVTEAI 260

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q67JB9|RSMA_SYMTH Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rsmA PE=3 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
             +KAL ++ G  P+  LGQ+++++  + D + +AA ++  D+VLEIGPG G+LT  L  
Sbjct: 7   GALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAA 66

Query: 162 AGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
               V+ +E D+ +V ++ +    + D ++V+  D  +  +      L   R +    AK
Sbjct: 67  KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAK 122

Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           VVAN+P+ I+T ++ +LL      S VV+++Q+E A R+V P   +  Y  +++ V +Y+
Sbjct: 123 VVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYT 181

Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           EP    +V R +F PQP+VD+AVV+ + ++    P     ++FF +V
Sbjct: 182 EPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVV 226

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Symbiobacterium thermophilum (taxid: 2734)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 120/213 (56%), Gaps = 11/213 (5%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           KSLGQ+++++  I D +   A V EGD ++E+GPG GSLT  +     +VLA+E D+ ++
Sbjct: 23  KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82

Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
            +++E   +   ++V+ ED +K  +   +   F  R       KV+AN+P+ ++T +I +
Sbjct: 83  PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137

Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
            L        + +++Q+E A R+ +    T +Y  ++I V +YS P+   KVP + F PQ
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQ 196

Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKS--FFSMV 327
           PKV++ V+   +    D P V+  +   FFS+V
Sbjct: 197 PKVESTVIRLDI---LDTPKVSVEREDLFFSLV 226

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Alkaliphilus oremlandii (strain OhILAs) (taxid: 350688)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q181C1|RSMA_CLOD6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium difficile (strain 630) GN=rsmA PE=3 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 128/228 (56%), Gaps = 10/228 (4%)

Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
           H   K +  K  F   KSLGQ+++++S I D++ + A +  GD ++E+GPG G+LT  + 
Sbjct: 7   HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66

Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
                V+AIE D++++ ++++  + +D  +V+ +D +K  I+  +     + K + G  K
Sbjct: 67  KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121

Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
           +VAN+P+ I+T ++ + L      +++V+++Q+E A R+   P   T +Y  ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179

Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
            + E   K PR  F PQP VD+ V+   ++    Y  V +   FF  V
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTV 226

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila caviae (strain GPIC) GN=rsmA PE=3 SV=1

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 127/219 (57%), Gaps = 19/219 (8%)

Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
           +GR P+K L Q+++++  I  ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17  QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75

Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
           KD              + LK L  D        + LS  E  K   G  +VVAN+P++I+
Sbjct: 76  KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124

Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
           T ++ +L L + + +  V +++Q+E A R+  +P  +  EY  + IF+ F+++  Y FKV
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKV 182

Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSM 326
               FFP+P+V +AVV   +K+   +P  TS  + FFS+
Sbjct: 183 SPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSL 219

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Chlamydophila caviae (strain GPIC) (taxid: 227941)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|P37468|RSMA_BACSU Ribosomal RNA small subunit methyltransferase A OS=Bacillus subtilis (strain 168) GN=rsmA PE=3 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 11/211 (5%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           +KSLGQ++++++ I +++   A V E   V+EIGPG G+LT  L      V+A E DQ +
Sbjct: 23  KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82

Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           + ++++  +  + + V+ +D +K  ++    S+ E +        VVAN+P+ ++T +I 
Sbjct: 83  LPILKDTLSPYENVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138

Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           +LL        +V++LQ+E A R+  +PS  + EY  ++I V FY+E +    VP+T F 
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196

Query: 295 PQPKVDAAVVTFKLKQATDYPAV-TSTKSFF 324
           PQP VD+AV+   L+   D PAV    +SFF
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFF 224

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+ +     K+     
Sbjct: 65  AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
           Y   +  F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae (strain P1031) (taxid: 488223)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
297842936	342	hypothetical protein ARALYDRAFT_470090 [	0.638	0.692	0.775	1e-107
225453766	335	PREDICTED: ribosomal RNA small subunit m	0.638	0.707	0.788	1e-107
15220982	343	Ribosomal RNA adenine dimethylase family	0.692	0.749	0.733	1e-107
356568329	341	PREDICTED: ribosomal RNA small subunit m	0.730	0.794	0.685	1e-105
449432199	347	PREDICTED: ribosomal RNA small subunit m	0.617	0.659	0.797	1e-105
356532056	341	PREDICTED: ribosomal RNA small subunit m	0.733	0.797	0.680	1e-104
255541450	338	dimethyladenosine transferase, putative	0.690	0.757	0.717	1e-103
357507115	349	Ribosomal RNA small subunit methyltransf	0.652	0.693	0.714	2e-98
300681318	343	dimethyladenosine transferase [Sorghum b	0.617	0.667	0.649	6e-86
294464127	351	unknown [Picea sitchensis]	0.673	0.712	0.627	8e-86

>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/240 (77%), Positives = 211/240 (87%), Gaps = 3/240 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 46  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 105

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 106 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 165

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 166 SRRLSHPDSSLAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 225

Query: 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK  +DYP V+STK+FFS+V
Sbjct: 226 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLV 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453766|ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/241 (78%), Positives = 210/241 (87%), Gaps = 4/241 (1%)

Query: 90  CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149
           CI CARSQDD YHAT+ ALNSKGR PRKSLGQHYMLNS IN+QLA  A +++GD++LEIG
Sbjct: 39  CITCARSQDD-YHATLDALNSKGRTPRKSLGQHYMLNSSINEQLADTADIRDGDVILEIG 97

Query: 150 PGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209
           PGTGSLTNVLL+AGATVLAIEKD HM  LVRERFA  D+LKVLQEDF+KCHI  H+ SL 
Sbjct: 98  PGTGSLTNVLLDAGATVLAIEKDAHMAALVRERFAVTDRLKVLQEDFMKCHIHPHLFSLL 157

Query: 210 ERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266
           E +K+    S +AKVV+NIPFNISTDV+K LLPMGDIFSEVVLLLQ+ETALRLVE SLRT
Sbjct: 158 ESKKAKNKESRYAKVVSNIPFNISTDVVKILLPMGDIFSEVVLLLQDETALRLVEASLRT 217

Query: 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
            EYRPINIFVNFYS+PEYKFKVPRTNFFPQP VDAAVV FKLKQA DYP V+S KSFFS+
Sbjct: 218 QEYRPINIFVNFYSDPEYKFKVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSL 277

Query: 327 V 327
           V
Sbjct: 278 V 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220982|ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/263 (73%), Positives = 218/263 (82%), Gaps = 6/263 (2%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query: 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK   DYP V+STK+FFS+V
Sbjct: 227 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLV 286

Query: 328 VPLLN---VLQFKLLTTTSSFPD 347
               N    +  K L   SS PD
Sbjct: 287 NSAFNGKRKMLRKSLQHISSSPD 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568329|ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/286 (68%), Positives = 225/286 (78%), Gaps = 15/286 (5%)

Query: 55  MTTSTLLVFQ------NPLLPKPTRPAHSSIAGVQKGAASACIVCARSQD-------DDY 101
           M+ S+L   Q      + LL +  +PAH S AGV++   +  +VCA           DDY
Sbjct: 1   MSPSSLCSLQTFPPISHALLNRHHKPAHDSTAGVRR--RTPYVVCAEKGSRASTRSADDY 58

Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
           HAT+KALNSKGRFPRKSLGQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN
Sbjct: 59  HATLKALNSKGRFPRKSLGQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLN 118

Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
           +GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RSHM SL       S  AKV
Sbjct: 119 SGAFVLAVEKDKHMAALVSERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKV 178

Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
           VANIPFNISTDVIK LLPMGDIFSEVVLLLQEETA+RLV  SLRT EYRPIN+FVNFYS+
Sbjct: 179 VANIPFNISTDVIKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYSD 238

Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           PEYK +VPRTNFFPQP VDAAVV+FKLK  ++YP V+STKSFFSMV
Sbjct: 239 PEYKLEVPRTNFFPQPNVDAAVVSFKLKLPSEYPQVSSTKSFFSMV 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432199|ref|XP_004133887.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Cucumis sativus]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/232 (79%), Positives = 209/232 (90%), Gaps = 3/232 (1%)

Query: 99  DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
           DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59  DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118

Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF---ERRKSS 215
           L+N+GATVLA+EKD +M GLV ERFA+ ++LKVL EDFVKC++ SHM+SL    E  ++ 
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEAR 178

Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
           S  AKVV+NIPFNISTD+IKQLLPMGDIFSEVVLLLQEE ALRLVE SLRTSEYRPIN+F
Sbjct: 179 SQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVF 238

Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           VNFYS+PE KFKVPRTNFFPQP VDAAVV+FKLK+A DYPAV+STKSFFSMV
Sbjct: 239 VNFYSDPELKFKVPRTNFFPQPNVDAAVVSFKLKRAADYPAVSSTKSFFSMV 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532056|ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/285 (68%), Positives = 223/285 (78%), Gaps = 13/285 (4%)

Query: 55  MTTSTLLVFQ------NPLLPKPTRPAHSSIAGVQK------GAASACIVCARSQDDDYH 102
           M+ S+L   Q      + LL +  +PAH S AGV+        +  +     RS DD YH
Sbjct: 1   MSPSSLCSLQASPPISHALLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADD-YH 59

Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
           AT+KALNSKGRFPRKSLGQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+
Sbjct: 60  ATLKALNSKGRFPRKSLGQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNS 119

Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
           GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RSHM SL       S  AKVV
Sbjct: 120 GAFVLAVEKDKHMAALVSERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVV 179

Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
           ANIPFNISTDVIK LLPMGDIFSEVVLLLQEETA+RLV  SLRT EYRP+N+FVNFYS+P
Sbjct: 180 ANIPFNISTDVIKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPVNVFVNFYSDP 239

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           EYK KVPR+NFFPQP VDAAVV+FKLK  ++YP V+STKSFFSMV
Sbjct: 240 EYKLKVPRSNFFPQPNVDAAVVSFKLKLPSEYPQVSSTKSFFSMV 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/262 (71%), Positives = 212/262 (80%), Gaps = 6/262 (2%)

Query: 70  KPTRPAHSSIAGVQKGAASACIVC-ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSE 128
           KP+ P+ + I   +K      I C  +   DDY AT+KALNS+GR PRKSLGQHYMLNSE
Sbjct: 22  KPSVPSRNGITSARK--KRVLIRCDTKRSSDDYRATLKALNSRGRRPRKSLGQHYMLNSE 79

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           +N+QL  AA V+EGD+VLEIGPGTGSLTN+LL+ GATVLAIEKD HM  +VRERF+  D+
Sbjct: 80  VNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGATVLAIEKDAHMAAIVRERFSHTDR 139

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245
            K+LQEDFVKCHIR HMLSL E   S       AKVVANIPFNISTDV+KQLLPMGDI S
Sbjct: 140 FKLLQEDFVKCHIRFHMLSLLENMTSLNEKPRRAKVVANIPFNISTDVVKQLLPMGDIIS 199

Query: 246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVT 305
           EV LLLQEETA RLVE SLRTSEYRPIN+FVNFYS+P YKFKVPR+NFFPQP VDAAVVT
Sbjct: 200 EVALLLQEETASRLVESSLRTSEYRPINVFVNFYSDPVYKFKVPRSNFFPQPNVDAAVVT 259

Query: 306 FKLKQATDYPAVTSTKSFFSMV 327
           FKLKQ  DYPAV+S+KSFFS+V
Sbjct: 260 FKLKQTADYPAVSSSKSFFSLV 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507115|ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula] gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 203/252 (80%), Gaps = 10/252 (3%)

Query: 91  IVCARSQD-------DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGD 143
           + C R  +       DDYHAT+KALNSKGR P+KSLGQ+YMLNS+IN+QL   A V+EGD
Sbjct: 46  VACGRGNNRASTTNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGD 105

Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
           +VLEIGPGTGSLTN L+N+GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RS
Sbjct: 106 VVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRS 165

Query: 204 HMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
           H+ SL    E   S +  AKVVANIPF ISTDVIK LLPMGDIFSEVVLLLQEETALR V
Sbjct: 166 HISSLVGSTEDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWV 225

Query: 261 EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 320
           EPSLRT EYRPINIFVNFYS+PEYKFKV RTNFFPQP VDAAVV+FKLKQ ++YP V+S 
Sbjct: 226 EPSLRTPEYRPINIFVNFYSDPEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSN 285

Query: 321 KSFFSMVVPLLN 332
           KSFFSMV    N
Sbjct: 286 KSFFSMVNSAFN 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor]

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 150/231 (64%), Positives = 193/231 (83%), Gaps = 2/231 (0%)

Query: 99  DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
           DDYH+TI++LNS+GR  PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT 
Sbjct: 56  DDYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTA 115

Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
            LL AGATV A+EKD+HM  LV++RF S +QLKV++ED  K HIRSH L    E+  ++ 
Sbjct: 116 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATK 175

Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
             AKVV+N+PFN+S++V+K LLPMGD+FS VVL+LQ+ETA+RL + S++  EYRPIN+FV
Sbjct: 176 KLAKVVSNLPFNVSSEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFV 235

Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           NFYS+PEYKF+V R NFFP+PKV+ AV++FKLK A +YP V+S KSFFSMV
Sbjct: 236 NFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMV 286

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis]

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 162/258 (62%), Positives = 191/258 (74%), Gaps = 8/258 (3%)

Query: 73  RPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
           +P+ SS+     G  +A   CA   +DDYH+T+K L S+GRFPRKSLGQHYMLNS IN+ 
Sbjct: 42  KPSMSSL-----GVPAASPRCALRAEDDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINEL 96

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           +   A ++EGD+VLEIGPGTG+LTN L+NAGA V AIEKD HM  LV ERF +  ++KV+
Sbjct: 97  MVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDAHMAMLVSERFNNNGKVKVV 156

Query: 193 QEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
           QEDF +CHI   +LS        S +   AKVV+N+PFNI+TDV+K LLPMGD+FS VVL
Sbjct: 157 QEDFTRCHIEPQILSFSTSIAPGSNYGQMAKVVSNLPFNIATDVLKLLLPMGDMFSHVVL 216

Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 309
           LLQ+E ALR+V  S  T EYR INIFVNFYS PEYKFKV RTNFFPQP VDAAVV FKLK
Sbjct: 217 LLQDEMALRVVGSSPGTPEYRQINIFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLK 276

Query: 310 QATDYPAVTSTKSFFSMV 327
           Q  DYP V S K FFSMV
Sbjct: 277 QVVDYPHVASPKGFFSMV 294

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2025437	343	PFC1 "PALEFACE 1" [Arabidopsis	0.706	0.763	0.726	1.5e-97
TIGR_CMR|BA_0039	292	BA_0039 "dimethyladenosine tra	0.617	0.784	0.302	5.3e-24
TAIR|locus:2155031	380	DIM1B "adenosine dimethyl tran	0.493	0.481	0.344	1.5e-23
TIGR_CMR|GSU_1864	276	GSU_1864 "dimethyladenosine tr	0.493	0.663	0.328	6.1e-23
TIGR_CMR|CHY_2616	291	CHY_2616 "dimethyladenosine tr	0.504	0.642	0.329	7e-22
TIGR_CMR|DET_0404	291	DET_0404 "dimethyladenosine tr	0.536	0.683	0.298	1.9e-21
TAIR|locus:2061982	353	DIM1A "AT2G47420" [Arabidopsis	0.463	0.487	0.359	1.4e-20
DICTYBASE|DDB_G0283789	314	dimt1l "dimethyladenosine tran	0.463	0.547	0.359	3.2e-19
ASPGD|ASPL0000035233	403	AN3313 [Emericella nidulans (t	0.574	0.528	0.331	2.2e-17
TIGR_CMR|APH_0622	269	APH_0622 "dimethyladenosine tr	0.606	0.836	0.297	3.7e-17

TAIR|locus:2025437 PFC1 "PALEFACE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 197/271 (72%), Positives = 224/271 (82%)

Query:    91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct:    47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query:   151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
             GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct:   107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query:   211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
              R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct:   167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query:   268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
             EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK   DYP V+STK+FFS+V
Sbjct:   227 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLV 286

Query:   328 VPLLN----VLQFKLLTTTSSFPD-DSALFV 353
                 N    +L+ K L   SS PD + AL V
Sbjct:   287 NSAFNGKRKMLR-KSLQHISSSPDIEKALGV 316

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

GO:0016422 "mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity" evidence=ISS

TIGR_CMR|BA_0039 BA_0039 "dimethyladenosine transferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 73/241 (30%), Positives = 120/241 (49%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             +KSLGQ++++++ + +++   A +      +EIGPG G+LT  L      V+A E DQ +
Sbjct:    22 KKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 81

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             + ++ E  A    + V+ +D +K  +       FE  +       VVAN+P+ I+T ++ 
Sbjct:    82 LPILDETLAPYGNVTVINKDVLKADVHEVFSEQFEEGQD----VMVVANLPYYITTPILF 137

Query:   236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
             +LL         V+++Q+E   RL  +P   T EY  ++I + +Y+E E    VPRT F 
Sbjct:   138 KLLEEKLPVRGFVVMMQKEVGDRLAAKPG--TKEYGSLSIAIQYYTEVETVMTVPRTVFV 195

Query:   295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV----VPLLNVLQFKLLTTTSSFPDDSA 350
             PQP VD+A++   LK+      VT    FF +V          L   L    + FP D  
Sbjct:   196 PQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKE 254

Query:   351 L 351
             L
Sbjct:   255 L 255

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TAIR|locus:2155031 DIM1B "adenosine dimethyl transferase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 70/203 (34%), Positives = 113/203 (55%)

Query:   112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
             G F  KS GQH + N+ I D +  ++ ++  D VLEIGPGTG+LT  LL A   V+A+E 
Sbjct:    60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119

Query:   172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
             D+ MV ++R+R +     D+L ++Q+D +K     H             F  VVANIP+N
Sbjct:   120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF-PH-------------FDLVVANIPYN 165

Query:   229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFK 287
             IS+ ++ +L+   + F    LLLQ+E + RL+  P    S++  + + V   ++ ++   
Sbjct:   166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLLANPG--DSDFNRLAVNVKLVADVKFVMD 223

Query:   288 VPRTNFFPQPKVDAAVVTFKLKQ 310
             V +  F P PKVD++V+    K+
Sbjct:   224 VSKREFVPPPKVDSSVIRITPKE 246

GO:0000154 "rRNA modification" evidence=IEA;IGI;ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA;IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA;ISS

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046085 "adenosine metabolic process" evidence=IMP

TIGR_CMR|GSU_1864 GSU_1864 "dimethyladenosine transferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 63/192 (32%), Positives = 108/192 (56%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK+LGQ+++ +  +  ++AA  +   G+ +LEIGPG G+LT+ L      ++A+E D  +
Sbjct:     9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQAGQLVAVELDDRL 68

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V L+R  FA    + +++ D +   +R  +      R  +  + KV AN+P+NIST V+ 
Sbjct:    69 VPLLRGSFAGNPSVTIIEGDILDLDLRETL-----GRYGTPPW-KVAANLPYNISTPVLF 122

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
             +LL   D+FS +VL+LQ+E   RL   P   + EY  +++    + +   +  V   +F 
Sbjct:   123 RLLDARDLFSRLVLMLQKEVGNRLAAGPG--SKEYGVLSVLFQLHFDVTREILVRPGSFH 180

Query:   295 PQPKVDAAVVTF 306
             P PKVD+ V+ F
Sbjct:   181 PVPKVDSVVLLF 192

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|CHY_2616 CHY_2616 "dimethyladenosine transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 65/197 (32%), Positives = 109/197 (55%)

Query:   119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
             LGQH++ +  I  ++   A + + D VLEIGPG G LT +L  A   V+AIE D+ ++ +
Sbjct:    24 LGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTRLLAQAAKYVVAIEIDKKLLPV 83

Query:   179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF-AK---VVANIPFNISTDVI 234
             + E    +  + V+  D  + +    M    E+     GF  K   +VAN+P+  ++ +I
Sbjct:    84 LAETTGDLGNVVVVNADAREINFDRVMA---EQTGGEFGFEGKPYLIVANLPYYATSPLI 140

Query:   235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
              ++   G   S + L++Q+E A R+  +P  +   Y  +++   ++SEP    KVPRT F
Sbjct:   141 FKVFEEGYKVSSMTLMMQKEVAERITAKPGSKI--YGSLSVACQYFSEPRIVLKVPRTVF 198

Query:   294 FPQPKVDAAVVTFKLKQ 310
             FP P+V++AVV F LK+
Sbjct:   199 FPPPEVESAVVRFTLKE 215

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|DET_0404 DET_0404 "dimethyladenosine transferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 63/211 (29%), Positives = 111/211 (52%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK LGQH++++  + +++  AA ++  D V+E+GPG G LT  L+     V+A+E D  +
Sbjct:    31 RKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDDKL 90

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V  + E+F +    +++  D +K        S  E    +  + K+VAN+P+ I++ V++
Sbjct:    91 VTALTEKFKAYPNFRIIHSDILKT-------SPAEILGQNIPY-KLVANLPYYITSAVLR 142

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
             Q L        +V+++Q+E A  +V    +T +   + + V FY  P     VP   F+P
Sbjct:   143 QFLEAEAKPELMVVMVQKEVAKNMVA---QTGDMGLLTLSVRFYGNPSLVSVVPGGAFYP 199

Query:   296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
              P+VD+A+V   + QA     V S   FF +
Sbjct:   200 PPEVDSAIVKVAIPQAAIMQGV-SEADFFKL 229

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TAIR|locus:2061982 DIM1A "AT2G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 69/192 (35%), Positives = 103/192 (53%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  + D +   A ++  D++LEIGPGTG+LT  LL AG  V+A+E D  MV
Sbjct:    30 KSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELDSRMV 89

Query:   177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               ++ RF      ++LKV+Q D +K  +                F   VANIP+ IS+ +
Sbjct:    90 LELQRRFQGTPFSNRLKVIQGDVLKTELPR--------------FDICVANIPYQISSPL 135

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
               +LL     F   V++ Q E A+RLV +P    + Y  +++    Y+   +  KV + N
Sbjct:   136 TFKLLFHPTSFRCAVIMYQREFAMRLVAQPG--DNLYCRLSVNTQLYARVSHLLKVGKNN 193

Query:   293 FFPQPKVDAAVV 304
             F P PKVD++VV
Sbjct:   194 FRPPPKVDSSVV 205

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0001708 "cell fate specification" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0051301 "cell division" evidence=IMP

DICTYBASE|DDB_G0283789 dimt1l "dimethyladenosine transferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 232 (86.7 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 69/192 (35%), Positives = 101/192 (52%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  I D +   + ++  D VLEIGPGTG+LT  LL     V+AIE D  M 
Sbjct:    31 KSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRMA 90

Query:   177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               +++R A+      L+++  DF+K       L  F+           VAN+P+ IS+ +
Sbjct:    91 AELQKRVAASPYAQHLQIILGDFLKVD-----LPYFD---------VCVANVPYQISSPL 136

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
               +LL    IF   VL+ Q+E ALRL  +P    S Y  +++     S+  +  KV + N
Sbjct:   137 TFKLLAHRPIFRTAVLMFQKEFALRLGAKPG--DSLYCRLSVNTQLLSKVTHLMKVGKNN 194

Query:   293 FFPQPKVDAAVV 304
             F P PKV++AVV
Sbjct:   195 FLPPPKVESAVV 206

GO:0031167 "rRNA methylation" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0000154 "rRNA modification" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ASPGD|ASPL0000035233 AN3313 [Emericella nidulans (taxid:162425)]

 Score = 233 (87.1 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 77/232 (33%), Positives = 116/232 (50%)

Query:    83 QKGA-ASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQE 141
             +K A ASA      S+ D   A  KA ++  +F    LGQH + N  I D +   A VQ 
Sbjct:     7 KKSARASASPYQKPSKGDGRSAAAKAGSAIFKF-NTDLGQHILKNGAIADNIVDKANVQP 65

Query:   142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ---EDFVK 198
                VLE+GPG G LT  +L     V+A+E D  M   + +R  +    K LQ    DF+K
Sbjct:    66 SQTVLEVGPGPGILTTRILEKAKKVVAVEFDPRMAAELTKRVQATPMEKKLQIVLGDFIK 125

Query:   199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
               +    L  F+           ++N P+ IS+ +I +LL M +     VL++Q E ALR
Sbjct:   126 TDLSK--LPPFQ---------VCISNTPYQISSPLIFKLLSMPNPPKMCVLMVQREFALR 174

Query:   259 LV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 309
             L+  P    + Y  +++ V F+S+  +  KV R NF P P+V+++VV  + K
Sbjct:   175 LLARPG--DALYSRLSVNVQFFSKVSHIMKVGRNNFRPPPQVESSVVRIEPK 224

GO:0006547 "histidine metabolic process" evidence=RCA

GO:0008168 "methyltransferase activity" evidence=RCA

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

TIGR_CMR|APH_0622 APH_0622 "dimethyladenosine transferase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 214 (80.4 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 74/249 (29%), Positives = 126/249 (50%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
             +KSLGQ ++L+  I +++ + A   E   V+E+GPG G +T  +LN     L AIEKD+ 
Sbjct:     9 KKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKDRR 68

Query:   175 MVGL---VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
             +  +   ++E  A  D    + ED +  +I        E+  S S   K+++N+P+NIS 
Sbjct:    69 LSNIHSKLKEAHAEYD---CIFEDILDVNI--------EQLLSQSPL-KMISNLPYNISV 116

Query:   232 DVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
              ++ +LLP    F +++L+ Q+E A R+V +P+  T  Y  ++I V    +       P 
Sbjct:   117 ILLLKLLPYIHRFEKLILMFQKEVADRIVAQPN--TKSYSILSILVQLLCDVRKVEDFPP 174

Query:   291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTT--SSFPDD 348
               F P PKV ++V+      +   P  +   S+F+ V+  L   + K +  +  S   D 
Sbjct:   175 EIFSPSPKVYSSVIEITPLLS---PRFSVDNSYFAQVLKKLFHCRRKTIRNSLKSCIKDA 231

Query:   349 SALFVHKNI 357
              ALF+  NI
Sbjct:   232 DALFIGCNI 240

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.182	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__44__AT1G01860.1	annotation not avaliable (342 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.4__628__AT2G26930.1	annotation not avaliable (383 aa)	•						•		0.770
	scaffold_502663.1	annotation not avaliable (615 aa)	•						•		0.714
	scaffold_303456.1	annotation not avaliable (125 aa)					•		•		0.704
	fgenesh2_kg.3__208__AT3G02660.1	annotation not avaliable (511 aa)	•						•		0.620
	fgenesh2_kg.8__2416__AT5G64050.1	annotation not avaliable (570 aa)	•						•		0.591
	scaffold_201253.1	annotation not avaliable (355 aa)	•						•		0.582
	scaffold_201045.1	annotation not avaliable (1763 aa)							•		0.575
	scaffold_200152.1	annotation not avaliable (534 aa)							•		0.551
	Al_scaffold_0002_1243	annotation not avaliable (355 aa)	•						•		0.549
	fgenesh1_pm.C_scaffold_2000068	annotation not avaliable (231 aa)	•						•		0.542

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	2e-55
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	2e-53
PRK00274	272	PRK00274, ksgA, 16S ribosomal RNA methyltransferas	1e-50
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	2e-44
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	1e-39
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	2e-36
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	1e-28
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	9e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-04
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	3e-04
COG3963	194	COG3963, COG3963, Phospholipid N-methyltransferase	5e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	8e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.002
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.002

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score =  179 bits (456), Expect = 2e-55
 Identities = 65/181 (35%), Positives = 100/181 (55%), Gaps = 13/181 (7%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           + D++  AA ++ GD VLEIGPG G+LT  LL     V AIE D  +   +RE+FA+ D 
Sbjct: 1   VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAADN 60

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVV 248
           L V+  D +K  +                  KVV N+P+NIST ++ +LL     F + V
Sbjct: 61  LTVIHGDALKFDLPKL------------QPYKVVGNLPYNISTPILFKLLEEPPAFRDAV 108

Query: 249 LLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKL 308
           L++Q+E A RL      + +Y  +++ +  Y++ +  FKVP + F P PKVD+AVV  + 
Sbjct: 109 LMVQKEVARRLAAKPG-SKDYGRLSVLLQPYADVKILFKVPPSAFRPPPKVDSAVVRLER 167

Query: 309 K 309
           +
Sbjct: 168 R 168

Length = 169

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score =  177 bits (450), Expect = 2e-53
 Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 14/204 (6%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P K LGQ+++++  + D++  AA +  GD VLEIGPG G+LT  LL   A V AIE D+ 
Sbjct: 4   PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  +++ERFA  D L V+  D +K               S +   KVVAN+P+NIS+ ++
Sbjct: 64  LAEVLKERFAPYDNLTVINGDALK-----------FDFPSLAQPYKVVANLPYNISSPIL 112

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
            +LL    I  ++VL++Q+E A RLV +P   + +Y  +++ V +Y++ E  F VP + F
Sbjct: 113 FKLLEEKFIIQDMVLMVQKEVAERLVAKPG--SKDYGRLSVLVQYYADVEIVFDVPPSAF 170

Query: 294 FPQPKVDAAVVTFKLKQATDYPAV 317
           +P PKVD+AVV    K+    P  
Sbjct: 171 YPPPKVDSAVVRLVPKKEKPSPVK 194

Length = 259

>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

 Score =  170 bits (433), Expect = 1e-50
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 17/225 (7%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T + L   G   +KSLGQ+++++  I D++  AA  Q GD VLEIGPG G+LT  LL   
Sbjct: 5   TRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
           A V A+E D+ +  ++ E FA  D L +++ D +K           +  +      KVVA
Sbjct: 65  AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALK----------VDLSELQP--LKVVA 111

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
           N+P+NI+T ++  LL   D   ++V+++Q+E A R+V +P   +  Y  +++ V +Y + 
Sbjct: 112 NLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG--SKAYGRLSVLVQYYCDV 169

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           E  F VP + F P PKVD+AVV    ++    P     + FF +V
Sbjct: 170 EKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVK-DEELFFRVV 213

Length = 272

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score =  153 bits (388), Expect = 2e-44
 Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 15/197 (7%)

Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
            PRKSLGQ+++++  +  ++  AA V EGD+VLEIGPG G+LT  LL     V AIE D+
Sbjct: 2   RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDR 61

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            +   +R+  +  + L++++ D +K                     KVV+N+P+NIS+ +
Sbjct: 62  RLAERLRKLLSLYENLEIIEGDALK-----------VDLNEFPKQLKVVSNLPYNISSPL 110

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
           I +LL   D F   VL++Q+E A RL  +P   + +Y  +++ V +++  E  FKVP + 
Sbjct: 111 IFKLL-EKDKFRLAVLMVQKEVAERLTAKPG--SKDYGRLSVLVQYFANVEIVFKVPPSA 167

Query: 293 FFPQPKVDAAVVTFKLK 309
           F+P PKVD+AVV    +
Sbjct: 168 FYPPPKVDSAVVRLIPR 184

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score =  140 bits (356), Expect = 1e-39
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 17/193 (8%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
             K LGQH++++  + D++   A   +GD VLEIGPG G+LT+ L      V AIE D  
Sbjct: 3   MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   +R+   +   +++++ D +K  +                F KVV+N+P+ IS+ + 
Sbjct: 63  LAEFLRDDEIAAGNVEIIEGDALKVDLPE--------------FNKVVSNLPYQISSPIT 108

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
            +LL  G  F   VL+ Q+E A R+V     T EY  +++ V +Y++ E   KVP   F 
Sbjct: 109 FKLLKHG--FEPAVLMYQKEFAERMVAKP-GTKEYGRLSVMVQYYADVEIVEKVPPGAFS 165

Query: 295 PQPKVDAAVVTFK 307
           P+PKVD+AVV   
Sbjct: 166 PKPKVDSAVVRLT 178

Length = 258

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score =  132 bits (335), Expect = 2e-36
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 17/218 (7%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            R+  GQ+++ N ++ +++   A +QE D VLEIGPG G+LT  L      V+AIE D  
Sbjct: 3   GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   ++E+ A    ++V+ +DF+K        S  +          VV NIP+NI+T ++
Sbjct: 63  LAKRLQEKLALHPNVEVVHQDFLK-------FSFPKDDP-----FLVVGNIPYNITTPIV 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           K+LL       +++L++Q+E A RL+    R      + +    +++ +   KVPR++F 
Sbjct: 111 KKLLFESRFGVKMLLVVQKEFARRLLA---RPKIRSRLTVLTEPFTDIKLVAKVPRSSFR 167

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLN 332
           P PKVD+A+V  +L++      V   K +  +V  L N
Sbjct: 168 PPPKVDSALV--RLERRDTPLPVKDLKKYDYLVRKLFN 203

Length = 254

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score =  112 bits (282), Expect = 1e-28
 Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 20/192 (10%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K  GQH + N  + D++   AA++  D VLEIGPGTG+LT  LL     V+AIE D  MV
Sbjct: 12  KKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMV 71

Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
             +++RF +     +L+V++ D +K        + F        F   VAN+P+ IS+ +
Sbjct: 72  AELKKRFQNSPLASKLEVIEGDALK--------TEFPY------FDVCVANVPYQISSPL 117

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
           + +LL    +F   VL+ Q+E ALRL+ +P      Y  +++         +  KV + +
Sbjct: 118 VFKLLAHRPLFRCAVLMFQKEFALRLLAQPG--DELYCRLSVNTQLLCRVTHLMKVSKNS 175

Query: 293 FFPQPKVDAAVV 304
           F P PKV+++VV
Sbjct: 176 FNPPPKVESSVV 187

Length = 294

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER--FASIDQLKVLQEDF 196
            G  VL+IG GTGSL   L     GA V  ++    M+ L RE    A   ++  +Q D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
              AVQ GD VL++G G G+    L   +     V+ I++ + M+ L +ER A
Sbjct: 13  ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA 65

Length = 241

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----Q 188
           LA  A  ++GD VLE+G G+G +  V    G  V+ ++ + + V   +      +     
Sbjct: 15  LAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNG 74

Query: 189 LKVLQEDFVKC 199
           ++V++ D  + 
Sbjct: 75  VEVIRSDLFEP 85

Length = 188

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
           +     ++ GD VLEIG G+G    VL      V++IE+ + +    R    +   + + 
Sbjct: 64  MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVT 123

Query: 191 VLQED 195
           V   D
Sbjct: 124 VRHGD 128

Length = 209

>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL 189
           +A+    + G  VLE+GPGTG +T  +L+ G    ++ AIE     V  + + +  ++ +
Sbjct: 40  MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNII 99

Query: 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV-VANIPFNISTDVIKQLL 238
                      +R+  L   + +   S  + + + N P +    +++ LL
Sbjct: 100 NGDAF-----DLRTT-LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL 143

Length = 194

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 21/130 (16%)

Query: 140 QEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQE 194
           + G  VL++G GTG LT +L   L  GA V+ I+  +  +   +E       + ++ +Q 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61

Query: 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEE 254
           D         +  L + +   + F  V++N   N   D          +  E++ +L+  
Sbjct: 62  D---------IEELPQLQLEDNSFDVVISNEVLNHLPD-------PDKVLEEIIRVLKPG 105

Query: 255 TALRLVEPSL 264
             L + +P L
Sbjct: 106 GVLIVSDPVL 115

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
           L+IG GTG+L   LL A  G     ++     +    ER A++  L  ++        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA 58

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVR 180
           M   EI     +   +++GD++L+IG GTGS+T   ++L+     V A++KD+  + L R
Sbjct: 23  MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82

Query: 181 ---ERFASIDQLKVLQED 195
              E+F  ++ + +++ +
Sbjct: 83  RNAEKFGVLNNIVLIKGE 100

Length = 198

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVR- 180
           M   EI     +    + GD + +IG GTGS+T     AG    V+AIE+D+  + L+  
Sbjct: 17  MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER 76

Query: 181 --ERF 183
              RF
Sbjct: 77  NAARF 81

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	100.0
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	100.0
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	100.0
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	100.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	100.0
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	100.0
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	100.0
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	100.0
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	99.97
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.65
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.59
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.57
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.55
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.54
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.51
PHA03412	241	putative methyltransferase; Provisional	99.46
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.41
COG4123	248	Predicted O-methyltransferase [General function pr	99.29
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.29
PHA03411	279	putative methyltransferase; Provisional	99.28
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.28
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.25
PRK14967	223	putative methyltransferase; Provisional	99.23
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.23
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.21
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.2
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.17
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.17
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.14
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.13
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.12
COG2890	280	HemK Methylase of polypeptide chain release factor	99.12
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.12
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.12
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.11
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.11
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.11
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.11
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.1
PRK14968	188	putative methyltransferase; Provisional	99.09
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.09
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.09
PRK11207	197	tellurite resistance protein TehB; Provisional	99.07
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.07
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.07
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.07
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.06
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.06
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.06
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.05
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.05
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.04
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.04
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.04
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.03
PLN02244	340	tocopherol O-methyltransferase	99.03
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.03
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.02
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.02
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.01
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.01
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.0
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.0
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.0
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.0
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.99
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.97
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.96
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.96
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.96
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.95
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.94
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.94
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.93
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.92
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.92
COG4122	219	Predicted O-methyltransferase [General function pr	98.91
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.91
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.91
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.91
PRK12335	287	tellurite resistance protein TehB; Provisional	98.91
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.9
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.9
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.9
PRK07402	196	precorrin-6B methylase; Provisional	98.9
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.89
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.88
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.88
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.88
PLN02336	475	phosphoethanolamine N-methyltransferase	98.88
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.87
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.86
PLN02336	475	phosphoethanolamine N-methyltransferase	98.85
PRK04266	226	fibrillarin; Provisional	98.84
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.83
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.83
PRK05785	226	hypothetical protein; Provisional	98.83
PRK04148	134	hypothetical protein; Provisional	98.83
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.83
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.83
PLN02672	1082	methionine S-methyltransferase	98.83
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.83
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.82
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.81
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.81
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.8
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.79
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.77
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.77
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.76
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.76
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.75
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.75
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.75
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.74
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.74
PRK08317	241	hypothetical protein; Provisional	98.74
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.74
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.74
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.74
PLN02476	278	O-methyltransferase	98.74
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.73
KOG2904	328	consensus Predicted methyltransferase [General fun	98.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.71
PLN02490	340	MPBQ/MSBQ methyltransferase	98.7
PRK06922	677	hypothetical protein; Provisional	98.7
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.7
PRK06202	232	hypothetical protein; Provisional	98.68
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.68
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.68
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.65
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.64
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.64
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.64
PLN03075	296	nicotianamine synthase; Provisional	98.63
PRK00811	283	spermidine synthase; Provisional	98.61
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.6
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.59
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.59
PRK04457	262	spermidine synthase; Provisional	98.58
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.56
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.56
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.55
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.55
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.54
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.54
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.53
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.53
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.53
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.52
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.52
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.48
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.48
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.47
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.46
COG2521	287	Predicted archaeal methyltransferase [General func	98.46
TIGR00438	188	rrmJ cell division protein FtsJ.	98.43
PRK01581	374	speE spermidine synthase; Validated	98.43
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.43
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.43
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.42
PLN02366	308	spermidine synthase	98.42
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.41
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.4
PRK03612	521	spermidine synthase; Provisional	98.39
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.38
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.37
PTZ00146	293	fibrillarin; Provisional	98.36
TIGR03438	301	probable methyltransferase. This model represents	98.34
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.33
COG2520	341	Predicted methyltransferase [General function pred	98.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.25
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.23
COG4076	252	Predicted RNA methylase [General function predicti	98.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.22
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.21
PRK10742	250	putative methyltransferase; Provisional	98.2
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.19
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.18
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.15
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.14
KOG2730	263	consensus Methylase [General function prediction o	98.14
KOG1271	227	consensus Methyltransferases [General function pre	98.13
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.1
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.09
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.09
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.04
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.03
PLN02823	336	spermine synthase	98.03
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.99
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.91
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.9
COG0286	489	HsdM Type I restriction-modification system methyl	97.9
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.88
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.87
KOG4300	252	consensus Predicted methyltransferase [General fun	97.85
PF13679	141	Methyltransf_32: Methyltransferase domain	97.83
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.8
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.75
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.75
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.73
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.65
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.65
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.61
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.58
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.49
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.46
KOG2899	288	consensus Predicted methyltransferase [General fun	97.43
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.42
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.39
KOG3010	261	consensus Methyltransferase [General function pred	97.21
KOG2361	264	consensus Predicted methyltransferase [General fun	97.11
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.06
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.98
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.98
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.97
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.96
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.95
PRK00536	262	speE spermidine synthase; Provisional	96.95
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.93
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.89
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.86
PHA01634	156	hypothetical protein	96.82
COG3897	218	Predicted methyltransferase [General function pred	96.81
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.8
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.62
PRK11524	284	putative methyltransferase; Provisional	96.62
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.6
KOG2940	325	consensus Predicted methyltransferase [General fun	96.35
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.29
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.27
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.17
PRK13699	227	putative methylase; Provisional	96.16
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.13
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.09
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.94
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.71
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	95.67
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.63
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.62
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.61
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.54
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.46
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.36
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.33
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.21
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.05
PLN02232	160	ubiquinone biosynthesis methyltransferase	94.91
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.79
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.64
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.3
PRK10458	467	DNA cytosine methylase; Provisional	94.29
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	94.16
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.95
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	93.9
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	93.81
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	93.7
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	93.56
COG1565	370	Uncharacterized conserved protein [Function unknow	93.37
KOG2912	419	consensus Predicted DNA methylase [Function unknow	93.35
KOG1227	351	consensus Putative methyltransferase [General func	93.03
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	92.92
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.89
KOG3115	249	consensus Methyltransferase-like protein [General	92.39
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	92.36
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	92.34
KOG2078	495	consensus tRNA modification enzyme [RNA processing	92.3
COG1568	354	Predicted methyltransferases [General function pre	92.2
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.05
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	91.79
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	91.68
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.67
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.6
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	91.41
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	91.36
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	91.28
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	90.58
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	90.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.33
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	90.18
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	89.75
PRK12829	264	short chain dehydrogenase; Provisional	89.58
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	89.57
COG0863	302	DNA modification methylase [DNA replication, recom	89.11
KOG3924	419	consensus Putative protein methyltransferase invol	88.73
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	88.69
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	88.6
PRK05867	253	short chain dehydrogenase; Provisional	88.37
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	88.26
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	88.09
PRK08340	259	glucose-1-dehydrogenase; Provisional	87.84
KOG2352	482	consensus Predicted spermine/spermidine synthase [	87.7
PRK06172	253	short chain dehydrogenase; Provisional	87.69
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.49
PRK08339	263	short chain dehydrogenase; Provisional	87.39
PRK07024	257	short chain dehydrogenase; Provisional	87.35
PLN02253	280	xanthoxin dehydrogenase	87.34
PRK07063	260	short chain dehydrogenase; Provisional	87.07
PRK07454	241	short chain dehydrogenase; Provisional	86.87
PRK06194	287	hypothetical protein; Provisional	86.77
PRK05866	293	short chain dehydrogenase; Provisional	86.54
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	86.5
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	86.46
PRK09072	263	short chain dehydrogenase; Provisional	86.28
PRK06124	256	gluconate 5-dehydrogenase; Provisional	86.22
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	86.16
PRK08589	272	short chain dehydrogenase; Validated	86.06
PRK07677	252	short chain dehydrogenase; Provisional	86.02
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	85.96
PRK06139	330	short chain dehydrogenase; Provisional	85.92
PRK07478	254	short chain dehydrogenase; Provisional	85.8
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.61
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	85.6
PRK07890	258	short chain dehydrogenase; Provisional	85.58
PRK08226	263	short chain dehydrogenase; Provisional	85.37
PRK07035	252	short chain dehydrogenase; Provisional	85.34
PRK05872	296	short chain dehydrogenase; Provisional	85.33
PRK05876	275	short chain dehydrogenase; Provisional	85.09
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.94
PRK07109	334	short chain dehydrogenase; Provisional	84.72
PRK06138	252	short chain dehydrogenase; Provisional	84.66
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	84.65
PRK08643	256	acetoin reductase; Validated	84.48
PRK05854	313	short chain dehydrogenase; Provisional	84.38
PRK08277	278	D-mannonate oxidoreductase; Provisional	84.36
PRK07097	265	gluconate 5-dehydrogenase; Provisional	84.31
PRK07523	255	gluconate 5-dehydrogenase; Provisional	84.24
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.23
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	84.17
PRK09242	257	tropinone reductase; Provisional	84.04
COG0569	225	TrkA K+ transport systems, NAD-binding component [	84.01
PRK08267	260	short chain dehydrogenase; Provisional	83.9
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	83.64
PRK08862	227	short chain dehydrogenase; Provisional	83.47
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	83.46
PRK07814	263	short chain dehydrogenase; Provisional	83.45
KOG2920	282	consensus Predicted methyltransferase [General fun	83.39
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	83.36
PRK06949	258	short chain dehydrogenase; Provisional	83.29
COG2961	279	ComJ Protein involved in catabolism of external DN	83.29
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	83.2
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	83.07
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	83.06
PRK07062	265	short chain dehydrogenase; Provisional	82.83
PRK08265	261	short chain dehydrogenase; Provisional	82.81
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	82.74
PRK07791	286	short chain dehydrogenase; Provisional	82.72
PRK12939	250	short chain dehydrogenase; Provisional	82.63
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	82.63
PLN02780	320	ketoreductase/ oxidoreductase	82.48
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	82.45
PRK08303	305	short chain dehydrogenase; Provisional	82.42
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	82.39
PRK05650	270	short chain dehydrogenase; Provisional	82.36
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	82.35
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	81.94
PRK08085	254	gluconate 5-dehydrogenase; Provisional	81.92
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	81.88
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	81.73
PRK07326	237	short chain dehydrogenase; Provisional	81.71
KOG2360	413	consensus Proliferation-associated nucleolar prote	81.7
PRK06500	249	short chain dehydrogenase; Provisional	81.43
PRK06181	263	short chain dehydrogenase; Provisional	81.27
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	81.25
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	81.25
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	81.13
PRK06196	315	oxidoreductase; Provisional	81.0
PRK07067	257	sorbitol dehydrogenase; Provisional	80.99
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	80.93
PRK09496	453	trkA potassium transporter peripheral membrane com	80.93
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	80.67
PRK08213	259	gluconate 5-dehydrogenase; Provisional	80.63
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.49
PRK07453	322	protochlorophyllide oxidoreductase; Validated	80.48
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.31
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	80.26
PRK07774	250	short chain dehydrogenase; Provisional	80.18

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-56  Score=418.61  Aligned_cols=234  Identities=35%  Similarity=0.569  Sum_probs=218.0

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~  193 (371)
                      +++|++||||++|++++++|++.+++.+++.|||||||.|.+|..|++.+.+|+|||+|+++++.+++.+...+|+++++
T Consensus         3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~   82 (259)
T COG0030           3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN   82 (259)
T ss_pred             CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence            46799999999999999999999999999999999999999999999999999999999999999999987667999999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls  273 (371)
                      ||+++.++..+           ..++.||||+||+|+||++.+|+.....+..+++|+|||+|+|++ |.||++.||+||
T Consensus        83 ~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls  150 (259)
T COG0030          83 GDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS  150 (259)
T ss_pred             CchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence            99999987531           157899999999999999999999887778999999999999999 899999999999


Q ss_pred             eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHH
Q 017450          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFV  353 (371)
Q Consensus       274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~  353 (371)
                      |++|++++++.+++||+++|+|+|+|||+||++++++....+ ..+.+.|+++++++|+||||||.|+|+.+.. ....|
T Consensus       151 V~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~-~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~-~~~~l  228 (259)
T COG0030         151 VLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSP-VKDEEKFFKFVKAAFSQRRKTLRNNLKNLFG-LEEVL  228 (259)
T ss_pred             hhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCc-ccCHHHHHHHHHHHHhhhhHHHHHHHHhhhh-HHHHH
Confidence            999999999999999999999999999999999997765444 4578999999999999999999999999877 78889


Q ss_pred             HHcCCCCc
Q 017450          354 HKNIILPS  361 (371)
Q Consensus       354 ~~~~~~~~  361 (371)
                      ..+||+|.
T Consensus       229 ~~~~i~~~  236 (259)
T COG0030         229 EAAGIDPN  236 (259)
T ss_pred             HhcCCCcc
Confidence            99999986

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=100.00  E-value=4.2e-50  Score=385.43  Aligned_cols=217  Identities=30%  Similarity=0.458  Sum_probs=199.7

Q ss_pred             hcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---C
Q 017450          110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I  186 (371)
Q Consensus       110 ~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~  186 (371)
                      .++.+++|++||||++|+.++++|++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++..   .
T Consensus         5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~   84 (294)
T PTZ00338          5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA   84 (294)
T ss_pred             cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence            3578999999999999999999999999999999999999999999999999988999999999999999998864   3


Q ss_pred             CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCC
Q 017450          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT  266 (371)
Q Consensus       187 ~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~  266 (371)
                      ++++++++|+++.++              +.+|+||+|+||+|+++++.+++.....+..+++|+|||+|+|++ +.||+
T Consensus        85 ~~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~  149 (294)
T PTZ00338         85 SKLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGD  149 (294)
T ss_pred             CcEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCC
Confidence            589999999998653              347899999999999999999998767788999999999999999 89999


Q ss_pred             CCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450          267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS  344 (371)
Q Consensus       267 k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~  344 (371)
                      +.||+|||++|++++++.+++||+++|+|+|+|||+||+|+|++.+.   ..+.+.|+.+++.+|+||||+|.|+|++
T Consensus       150 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdSavv~l~~~~~~~---~~~~~~~~~~v~~~F~~rrK~l~~~l~~  224 (294)
T PTZ00338        150 ELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPP---DVDFEEWDGLLRICFSRKNKTLSAIFKT  224 (294)
T ss_pred             cccCHHHHHHHHHhceEEEEEeCchhCCCCCCcEEEEEEEEECCCCC---CcCHHHHHHHHHHHHhhccHHHHHHhCc
Confidence            99999999999999999999999999999999999999999986532   2357889999999999999999998865

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=100.00  E-value=9.6e-48  Score=366.42  Aligned_cols=245  Identities=33%  Similarity=0.515  Sum_probs=219.1

Q ss_pred             HHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450          103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       103 ~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .+.+.+..++..+++.+||||++++.+++.+++.+...++++|||||||+|.+|..+++.+.+|+|+|+|++|++.++++
T Consensus         4 ~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~   83 (272)
T PRK00274          4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAET   83 (272)
T ss_pred             hHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHh
Confidence            45567788899999999999999999999999999998999999999999999999999988999999999999999998


Q ss_pred             hccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccC
Q 017450          183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP  262 (371)
Q Consensus       183 ~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a  262 (371)
                      +.. ++++++++|+.++++.+            -.++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++ +
T Consensus        84 ~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a  149 (272)
T PRK00274         84 FAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-A  149 (272)
T ss_pred             hcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-C
Confidence            754 68999999999986531            115899999999999999999997666678899999999999999 8


Q ss_pred             CCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhc
Q 017450          263 SLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTT  342 (371)
Q Consensus       263 ~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l  342 (371)
                      .||++.|+++||++|++++++++++||+++|+|+|+|||+||+|+|++....+ ..+.+.|..|++.+|++|||+|.|+|
T Consensus       150 ~pg~~~y~~lSv~~~~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~l  228 (272)
T PRK00274        150 KPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVP-VKDEELFFRVVKAAFAQRRKTLRNNL  228 (272)
T ss_pred             CCCCccccHHHHHHHHHcceEEEEEeChhhCCCCCCceEEEEEEEECCCCCCC-cccHHHHHHHHHHHHhchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997654322 23578899999999999999999999


Q ss_pred             cCCCC---CchHHHHHcCCCCcc
Q 017450          343 SSFPD---DSALFVHKNIILPSI  362 (371)
Q Consensus       343 ~~~~~---~~~~~~~~~~~~~~~  362 (371)
                      +.+..   .....|.++||+|+.
T Consensus       229 ~~~~~~~~~~~~~l~~~~~~~~~  251 (272)
T PRK00274        229 KNLFGSKEKLEEALEAAGIDPNR  251 (272)
T ss_pred             HhhccchHHHHHHHHHCCCCcCC
Confidence            98753   445679999999964

>TIGR00755 ksgA dimethyladenosine transferase

Probab=100.00  E-value=9.4e-46  Score=349.17  Aligned_cols=234  Identities=32%  Similarity=0.510  Sum_probs=207.8

Q ss_pred             CCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEE
Q 017450          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (371)
Q Consensus       113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi  192 (371)
                      +++++++||||++|+.+++.|++.+...++++|||||||+|.+|..|++.+.+|+++|+|+++++.+++++...++++++
T Consensus         1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~   80 (253)
T TIGR00755         1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVI   80 (253)
T ss_pred             CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEE
Confidence            36899999999999999999999999989999999999999999999999889999999999999999988655689999


Q ss_pred             EcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcce
Q 017450          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (371)
Q Consensus       193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~L  272 (371)
                      ++|+.+.++..           .+..+.|++|+||+++++++.+++. ...+..+++|+|+|+|+|++ +.||++.|+++
T Consensus        81 ~~D~~~~~~~~-----------~d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~l  147 (253)
T TIGR00755        81 EGDALKVDLPD-----------FPKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRL  147 (253)
T ss_pred             ECchhcCChhH-----------cCCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHH
Confidence            99999886531           0112599999999999999999995 33456799999999999999 89999999999


Q ss_pred             eeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCC--Cch
Q 017450          273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPD--DSA  350 (371)
Q Consensus       273 sv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~--~~~  350 (371)
                      |++++++++++++++||+++|+|+|+|||+||+|+|++..   ...+.+.|..+++.+|++|||+|.|+|+.+..  ...
T Consensus       148 sv~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~---~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~  224 (253)
T TIGR00755       148 SVLVQYFANVEIVFKVPPSAFYPPPKVDSAVVRLIPREQF---PVKDIALFEKLLKAAFSQRRKTLRNNLKQLLKASKLE  224 (253)
T ss_pred             HHHHHHHcceEEEEEEchhhCcCCCCeeEEEEEEEECCCC---CcccHHHHHHHHHHHHccchHHHHHHHhhhcchhHHH
Confidence            9999999999999999999999999999999999998754   23457889999999999999999999998764  344


Q ss_pred             HHHHHcCCCCcc
Q 017450          351 LFVHKNIILPSI  362 (371)
Q Consensus       351 ~~~~~~~~~~~~  362 (371)
                      ..|.+.||+|+.
T Consensus       225 ~~l~~~~i~~~~  236 (253)
T TIGR00755       225 EVLEQLGLDPTA  236 (253)
T ss_pred             HHHHHCCcCCCC
Confidence            568888998864

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=341.61  Aligned_cols=213  Identities=33%  Similarity=0.527  Sum_probs=194.2

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~  193 (371)
                      +++|++||||++|++++++|++.+...++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++...+++++++
T Consensus         2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~   81 (258)
T PRK14896          2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE   81 (258)
T ss_pred             CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence            58999999999999999999999998899999999999999999999998899999999999999999887656899999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls  273 (371)
                      +|+.++++              +.+|.||+|+||+++++++.+++..  .+..+++|+|+|+|+|++ +.||++.||++|
T Consensus        82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~~--~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls  144 (258)
T PRK14896         82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLKH--GFEPAVLMYQKEFAERMV-AKPGTKEYGRLS  144 (258)
T ss_pred             eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHhh--ccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence            99998754              2369999999999999999988863  345689999999999999 899999999999


Q ss_pred             eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCC
Q 017450          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSF  345 (371)
Q Consensus       274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~  345 (371)
                      ++.+++++++.++.+++.+|+|+|+|||+||+|++++. ..+ ..+.+.|..+++.+|+||||+|.|+|+.+
T Consensus       145 v~~~~~~~~~~~~~v~~~~F~P~PkV~s~vi~l~~~~~-~~~-~~~~~~~~~~~~~~F~~rrk~l~~~l~~~  214 (258)
T PRK14896        145 VMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTPREP-KYE-VYDEDFFDDFVKALFQHRRKTLRNALKNS  214 (258)
T ss_pred             HHHHHHeeeEEEEEeChHhCCCCCCceEEEEEEEECCC-CCC-CchHHHHHHHHHHHHccccHHHHHHHhhh
Confidence            99999999999999999999999999999999999863 222 33567899999999999999999999886

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=100.00  E-value=8.3e-45  Score=344.44  Aligned_cols=241  Identities=32%  Similarity=0.518  Sum_probs=208.3

Q ss_pred             CCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEE
Q 017450          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (371)
Q Consensus       113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi  192 (371)
                      .++++++||||++|+++++.|++.+.+.+++.|||||||+|.+|..|++.+.+|++||+|+.+++.+++.+...++++++
T Consensus         2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi   81 (262)
T PF00398_consen    2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVI   81 (262)
T ss_dssp             -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEE
T ss_pred             CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceee
Confidence            36889999999999999999999999999999999999999999999999999999999999999999998867799999


Q ss_pred             EcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCc-hhHHHHHhhhhHHhhhccCCCCCCCCcc
Q 017450          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRP  271 (371)
Q Consensus       193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~-~~~~~lmvQke~a~rl~~a~pg~k~Yg~  271 (371)
                      ++|+++++....         .......||||+||+++++++.+++..... ...+++|+|+|+|+|++ +.||++.|++
T Consensus        82 ~~D~l~~~~~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~  151 (262)
T PF00398_consen   82 NGDFLKWDLYDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSR  151 (262)
T ss_dssp             ES-TTTSCGGGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSH
T ss_pred             ecchhccccHHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccch
Confidence            999999876531         124678999999999999999999873222 47899999999999999 8999999999


Q ss_pred             eeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCC-CCch
Q 017450          272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFP-DDSA  350 (371)
Q Consensus       272 Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~-~~~~  350 (371)
                      +|+++|++++++.++.+|+++|+|+|+|||+||+++|++.+..+ ..+.+.|..+++.+|.+|||++.|+|+.+. ....
T Consensus       152 lsv~~q~~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~L~~~~~~~~~  230 (262)
T PF00398_consen  152 LSVLAQAFFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIP-PEDMDAFEYFVRQLFSQRRKTLRNSLKSLFPGEQL  230 (262)
T ss_dssp             HHHHHHHHEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS--CSHHHHHHHHHHHHHTTTTSBHHHHTTCTHHHHHH
T ss_pred             hhhhhhhhhceeEecccCCccccCCCCCceEEEEEEECCCCCCc-ccCHHHHHHHHHHHHhCcchHHHHHHhhhcCHHHH
Confidence            99999999999999999999999999999999999999875333 346899999999999999999999999875 3333


Q ss_pred             H-HHHHcCCCCcccc
Q 017450          351 L-FVHKNIILPSIFL  364 (371)
Q Consensus       351 ~-~~~~~~~~~~~~~  364 (371)
                      . .+.++||+|+.-.
T Consensus       231 ~~~~~~~~i~~~~r~  245 (262)
T PF00398_consen  231 EELLEKAGIDPNARA  245 (262)
T ss_dssp             HHHHHHCTHTTTTCG
T ss_pred             HHhhhhcCCCCCCCc
Confidence            4 4455999998654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=100.00  E-value=2e-41  Score=311.98  Aligned_cols=217  Identities=34%  Similarity=0.482  Sum_probs=200.4

Q ss_pred             hcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--
Q 017450          110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--  187 (371)
Q Consensus       110 ~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--  187 (371)
                      ..+..+++.+|||++.++.+++.|++.+.+++++.|||||+|||.+|..|++.|++|+|+|+|++|++.+.+++...+  
T Consensus        27 ~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~  106 (315)
T KOG0820|consen   27 SGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKS  106 (315)
T ss_pred             ccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcc
Confidence            446789999999999999999999999999999999999999999999999999999999999999999999998654  


Q ss_pred             -CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCC
Q 017450          188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT  266 (371)
Q Consensus       188 -~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~  266 (371)
                       .+++++||+++.++              +.+|.||+|+||+|+|+++++|+.++..+.++++|+|+|+|.|+. +.||+
T Consensus       107 ~kLqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd  171 (315)
T KOG0820|consen  107 GKLQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGD  171 (315)
T ss_pred             ceeeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCC
Confidence             78999999999754              579999999999999999999999999999999999999999998 89999


Q ss_pred             CCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450          267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS  344 (371)
Q Consensus       267 k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~  344 (371)
                      +.|.++|+.+|+++.++.+++|+++.|+|+|+|+|+||+++++..++.   .+...+..+++.+|....|++....++
T Consensus       172 ~~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~pp---~~~~ewdg~lri~F~rkNktl~a~fk~  246 (315)
T KOG0820|consen  172 SLYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRPP---VDFHEWDGLLRICFLRKNKTLMAPFKS  246 (315)
T ss_pred             chhceeehhhHHhhcchhheeecccccCCCCccccceeEeecCCCCCc---cchHHHHHHHHHHHHHHhHHhhcchhh
Confidence            999999999999999999999999999999999999999999865432   357889999999999998887555444

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=100.00  E-value=9.2e-36  Score=264.50  Aligned_cols=167  Identities=40%  Similarity=0.610  Sum_probs=154.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ++.|++.+...++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++...++++++++|+.++++.       
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~-------   74 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP-------   74 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc-------
Confidence            5678888888889999999999999999999998899999999999999999987666899999999998642       


Q ss_pred             HhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeeeeccceEEEEeC
Q 017450          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP  289 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp  289 (371)
                           ...+|.|++|+||+++++++.+++........+++|+|+|+++|++ +.||++.||+||+++|++++++.+++||
T Consensus        75 -----~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~~~~v~  148 (169)
T smart00650       75 -----KLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKILFKVP  148 (169)
T ss_pred             -----ccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEEEEEEC
Confidence                 2358999999999999999999998766678899999999999999 8999999999999999999999999999


Q ss_pred             CCCcccCCCCceEEEEEEEc
Q 017450          290 RTNFFPQPKVDAAVVTFKLK  309 (371)
Q Consensus       290 ~~~F~P~PkVdS~vv~l~~~  309 (371)
                      +++|+|+|||||+|++|+++
T Consensus       149 ~~~F~P~PkV~s~~~~~~~~  168 (169)
T smart00650      149 PEAFRPPPKVDSAVVRLERR  168 (169)
T ss_pred             hhhCCCCCCceEEEEEEEEC
Confidence            99999999999999999986

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.97  E-value=6.8e-31  Score=235.62  Aligned_cols=254  Identities=22%  Similarity=0.367  Sum_probs=207.8

Q ss_pred             HHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhc
Q 017450          106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       106 ~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~  184 (371)
                      +.+.-+..+++|.+.|||++|.++.++|+..++....+.|.|||+|.|..|..+.+.+. ++..||+|.++++-++-..+
T Consensus        15 e~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E   94 (326)
T KOG0821|consen   15 EIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE   94 (326)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence            33444467899999999999999999999999988899999999999999999999864 79999999999887765554


Q ss_pred             cC-CCeEEEEcccccchhhhhhhhHHHh-hccCCCeeEEEecCCCcccHHHHHHhccC-----CCc---hhHHHHHhhhh
Q 017450          185 SI-DQLKVLQEDFVKCHIRSHMLSLFER-RKSSSGFAKVVANIPFNISTDVIKQLLPM-----GDI---FSEVVLLLQEE  254 (371)
Q Consensus       185 ~~-~~v~vi~gD~~~~~~~~~~~~l~~~-~~~~~~~d~VVaNlPy~iss~il~~Ll~~-----g~~---~~~~~lmvQke  254 (371)
                      .. ++..++++|++.+..++++.+-... +.+..+...++||+||++++|++.+++..     |.+   -..+++.+|+|
T Consensus        95 Aa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~E  174 (326)
T KOG0821|consen   95 AAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKE  174 (326)
T ss_pred             cCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHH
Confidence            43 3889999999998887654432221 12234456899999999999998877653     211   13678889999


Q ss_pred             HHhhhccCCCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCC
Q 017450          255 TALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVL  334 (371)
Q Consensus       255 ~a~rl~~a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~r  334 (371)
                      +|+|++ +.-|.+.-+++|++.|+++++...|.||.++|.|.|.||..||+|.|.+.+...  ...+...+++|..|+.|
T Consensus       175 VAeRlC-aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~--~~F~lvEkV~R~vF~~R  251 (326)
T KOG0821|consen  175 VAERLC-APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIE--QPFKLVEKVVRNVFQFR  251 (326)
T ss_pred             HHHHhc-ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCcccc--CCHHHHHHHHHHHHHHH
Confidence            999999 667788889999999999999999999999999999999999999998876432  24788899999999999


Q ss_pred             CcchHhhccCCCCCc------hHHHHHcCCCCcc
Q 017450          335 QFKLLTTTSSFPDDS------ALFVHKNIILPSI  362 (371)
Q Consensus       335 Rk~l~~~l~~~~~~~------~~~~~~~~~~~~~  362 (371)
                      .|-..+-|+.+.+++      --.|.++.|+|+.
T Consensus       252 QKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~  285 (326)
T KOG0821|consen  252 QKYCHRGLRTLFPEEQRLESTGRLLELADIDPTL  285 (326)
T ss_pred             HHHHHccccccCCHHHHHHHHHHHHHHhcCCCcc
Confidence            999988887764332      2357889999974

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.9e-15  Score=137.03  Aligned_cols=143  Identities=20%  Similarity=0.294  Sum_probs=117.6

Q ss_pred             HHHhhhc-CCCCcHHHHHHHHHhcCCC---c-------------ccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 017450           89 ACIVCAR-SQDDDYHATIKALNSKGRF---P-------------RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG  151 (371)
Q Consensus        89 ~mv~~~~-~~~~~~~~~~~~l~~~~~~---~-------------~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G  151 (371)
                      +|+..++ +...++.++.++|...++.   +             ....|| ++..|.++.+|++.+.++++++|||||||
T Consensus         4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG   82 (209)
T COG2518           4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG   82 (209)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence            6677777 4456778999998876443   1             123567 89999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec-CCCc
Q 017450          152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN  228 (371)
Q Consensus       152 ~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-lPy~  228 (371)
                      +||.|+.|++...+|++||+++.+++.|++++...+  |+.+++||....-.            ...+||.|+-+ -.=.
T Consensus        83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~------------~~aPyD~I~Vtaaa~~  150 (209)
T COG2518          83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP------------EEAPYDRIIVTAAAPE  150 (209)
T ss_pred             chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC------------CCCCcCEEEEeeccCC
Confidence            999999999998899999999999999999998765  89999999987532            34678887654 3336


Q ss_pred             ccHHHHHHhccCCCch
Q 017450          229 ISTDVIKQLLPMGDIF  244 (371)
Q Consensus       229 iss~il~~Ll~~g~~~  244 (371)
                      +...++++|.++|.++
T Consensus       151 vP~~Ll~QL~~gGrlv  166 (209)
T COG2518         151 VPEALLDQLKPGGRLV  166 (209)
T ss_pred             CCHHHHHhcccCCEEE
Confidence            7889999999998764

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=4.1e-14  Score=125.61  Aligned_cols=169  Identities=21%  Similarity=0.316  Sum_probs=120.2

Q ss_pred             CCCcccccCcccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC-
Q 017450          112 GRFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-  186 (371)
Q Consensus       112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~-  186 (371)
                      ...|+..+.| |.++..++..|+..+.   .-.|.+|+|+|||||.++...+-.|+ .|+|||+|+++++.+++|..+. 
T Consensus        14 f~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~   92 (198)
T COG2263          14 FPNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL   92 (198)
T ss_pred             CCCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC
Confidence            4568888999 9999999999998774   33678999999999999999998885 8999999999999999998765 


Q ss_pred             CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc-----HHHHHHhccCCCchhHHHHHhhhhHHhhhcc
Q 017450          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVIKQLLPMGDIFSEVVLLLQEETALRLVE  261 (371)
Q Consensus       187 ~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is-----s~il~~Ll~~g~~~~~~~lmvQke~a~rl~~  261 (371)
                      +++.++.+|+.++.               ..+|.+++||||..-     .+.+.+-++.+..+.....---+++.++...
T Consensus        93 g~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~  157 (198)
T COG2263          93 GDVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAA  157 (198)
T ss_pred             CceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHH
Confidence            48999999999874               568899999999543     3455555554443332222223344444441


Q ss_pred             CCCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCC---ceEEEEEE
Q 017450          262 PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV---DAAVVTFK  307 (371)
Q Consensus       262 a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkV---dS~vv~l~  307 (371)
                            ..|- ++...+    ...|.||+...+..-+|   +..+.+|.
T Consensus       158 ------~~G~-~v~~~~----~~~~~iP~~y~fH~k~~~~I~v~i~r~~  195 (198)
T COG2263         158 ------DLGG-TVTHIE----RARFPIPRTYPFHRKRVRRIEVDIFRFE  195 (198)
T ss_pred             ------hcCC-eEEEEE----EEEEecCccCchhhheeeeeeEEEEEEE
Confidence                  1110 122111    46688999998886544   44444443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.57  E-value=1.8e-14  Score=132.28  Aligned_cols=145  Identities=21%  Similarity=0.325  Sum_probs=108.4

Q ss_pred             HHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 017450           87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (371)
Q Consensus        87 r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG  149 (371)
                      ++.||+++++.+ +++.++.++|+...+.   +.             -..|+ .+..|.+..+|++.+.++++++|||||
T Consensus         2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~-~is~P~~~a~~l~~L~l~pg~~VLeIG   80 (209)
T PF01135_consen    2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQ-TISAPSMVARMLEALDLKPGDRVLEIG   80 (209)
T ss_dssp             HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTE-EE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeeccee-echHHHHHHHHHHHHhcCCCCEEEEec
Confidence            578999999666 8999999999876543   11             12244 788899999999999999999999999


Q ss_pred             CcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          150 PGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       150 ~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      ||+|++|..|+.. +  ..|++||+++.+++.|++++...+  |++++++|......            ...+||.|+.+
T Consensus        81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~------------~~apfD~I~v~  148 (209)
T PF01135_consen   81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP------------EEAPFDRIIVT  148 (209)
T ss_dssp             -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG------------GG-SEEEEEES
T ss_pred             CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc------------cCCCcCEEEEe
Confidence            9999999999986 3  369999999999999999998644  89999999876432            23579998876


Q ss_pred             CC-CcccHHHHHHhccCCCch
Q 017450          225 IP-FNISTDVIKQLLPMGDIF  244 (371)
Q Consensus       225 lP-y~iss~il~~Ll~~g~~~  244 (371)
                      -. ..+...++.+|.++|.++
T Consensus       149 ~a~~~ip~~l~~qL~~gGrLV  169 (209)
T PF01135_consen  149 AAVPEIPEALLEQLKPGGRLV  169 (209)
T ss_dssp             SBBSS--HHHHHTEEEEEEEE
T ss_pred             eccchHHHHHHHhcCCCcEEE
Confidence            33 367788888988887653

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=1e-13  Score=127.60  Aligned_cols=145  Identities=20%  Similarity=0.250  Sum_probs=112.2

Q ss_pred             HHHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450           86 AASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (371)
Q Consensus        86 ~r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEI  148 (371)
                      .++.||+.+++.+ +++.++.++|....+.   |.             -..|| .++.|.+...+++.+.+.++++||||
T Consensus         5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdI   83 (212)
T PRK13942          5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEI   83 (212)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEE
Confidence            3478999999776 7899999999866432   11             22455 67899999999999999999999999


Q ss_pred             cCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          149 GPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       149 G~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      |||+|++|..+++. +  .+|+++|+++++++.+++++...+  +++++++|+.+...            ....||+|+.
T Consensus        84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------------~~~~fD~I~~  151 (212)
T PRK13942         84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------------ENAPYDRIYV  151 (212)
T ss_pred             CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC------------cCCCcCEEEE
Confidence            99999999999886 2  599999999999999999987543  79999999976532            2356899876


Q ss_pred             cCC-CcccHHHHHHhccCCCc
Q 017450          224 NIP-FNISTDVIKQLLPMGDI  243 (371)
Q Consensus       224 NlP-y~iss~il~~Ll~~g~~  243 (371)
                      +-- -.+...+...|.++|.+
T Consensus       152 ~~~~~~~~~~l~~~LkpgG~l  172 (212)
T PRK13942        152 TAAGPDIPKPLIEQLKDGGIM  172 (212)
T ss_pred             CCCcccchHHHHHhhCCCcEE
Confidence            532 23445556666665544

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.54  E-value=1.4e-13  Score=126.80  Aligned_cols=147  Identities=20%  Similarity=0.226  Sum_probs=112.8

Q ss_pred             HHHHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-----------cccC-cccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450           85 GAASACIVCARSQD-DDYHATIKALNSKGRF---PR-----------KSLG-QHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (371)
Q Consensus        85 ~~r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-----------k~lG-Q~fl~~~~v~~~i~~~l~~~~~~~VLEI  148 (371)
                      ..++.||+.+++.+ +++..+.++|....+.   +.           ..+| .+.+..+.+.+.+++.+.+.++++||||
T Consensus         5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDi   84 (215)
T TIGR00080         5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEI   84 (215)
T ss_pred             HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEE
Confidence            34678999999776 7889999998876432   11           1122 1367788899999999999999999999


Q ss_pred             cCcccHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          149 GPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       149 G~G~G~lt~~La~~~~---~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      |||+|+++..|++...   +|+++|+++.+++.|++++...+  +++++++|+.+...            ....||.|+.
T Consensus        85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~------------~~~~fD~Ii~  152 (215)
T TIGR00080        85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE------------PLAPYDRIYV  152 (215)
T ss_pred             CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc------------ccCCCCEEEE
Confidence            9999999999998743   59999999999999999987653  89999999976421            2356999887


Q ss_pred             cCC-CcccHHHHHHhccCCCc
Q 017450          224 NIP-FNISTDVIKQLLPMGDI  243 (371)
Q Consensus       224 NlP-y~iss~il~~Ll~~g~~  243 (371)
                      +.+ .++...+...|.++|.+
T Consensus       153 ~~~~~~~~~~~~~~L~~gG~l  173 (215)
T TIGR00080       153 TAAGPKIPEALIDQLKEGGIL  173 (215)
T ss_pred             cCCcccccHHHHHhcCcCcEE
Confidence            754 35555666666666544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.51  E-value=3.7e-13  Score=123.23  Aligned_cols=144  Identities=16%  Similarity=0.159  Sum_probs=109.8

Q ss_pred             HHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 017450           87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (371)
Q Consensus        87 r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG  149 (371)
                      |..||+.+.+.+ +++.++.++|.+.++.   +.             -..|+ .+..+.+.+.+++.+.+.++++|||||
T Consensus         2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG   80 (205)
T PRK13944          2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG   80 (205)
T ss_pred             HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence            457999888665 5789999998776432   11             12233 566788899999999988999999999


Q ss_pred             CcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       150 ~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      ||+|+++..+++.   +.+|+++|+++++++.+++++...+   +++++++|+.+...            ....||.|++
T Consensus        81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~Ii~  148 (205)
T PRK13944         81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------------KHAPFDAIIV  148 (205)
T ss_pred             cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------------cCCCccEEEE
Confidence            9999999999875   3689999999999999999987543   58999999976422            2357999998


Q ss_pred             cCCC-cccHHHHHHhccCCCc
Q 017450          224 NIPF-NISTDVIKQLLPMGDI  243 (371)
Q Consensus       224 NlPy-~iss~il~~Ll~~g~~  243 (371)
                      +... ++...+...|.++|.+
T Consensus       149 ~~~~~~~~~~l~~~L~~gG~l  169 (205)
T PRK13944        149 TAAASTIPSALVRQLKDGGVL  169 (205)
T ss_pred             ccCcchhhHHHHHhcCcCcEE
Confidence            8654 4555666666666544

>PHA03412 putative methyltransferase; Provisional

Probab=99.46  E-value=4.1e-13  Score=124.41  Aligned_cols=109  Identities=14%  Similarity=0.256  Sum_probs=87.3

Q ss_pred             HHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-----CCeEEEEeCCHHHHHH
Q 017450          104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGL  178 (371)
Q Consensus       104 ~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~aIE~d~~~i~~  178 (371)
                      +.+-+.+.....++.+|| |.++..++..++...  ..+.+|||+|||+|.++..+++.     ..+|+|||+|+.+++.
T Consensus        15 ~~~n~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~   91 (241)
T PHA03412         15 IIENFHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL   91 (241)
T ss_pred             HHhhcccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence            444444545567888999 999999999886432  24679999999999999998874     3589999999999999


Q ss_pred             HHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       179 a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      |+++..   ++.++++|+...++             ...||.||+||||....
T Consensus        92 Ar~n~~---~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         92 GKRIVP---EATWINADALTTEF-------------DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             HHhhcc---CCEEEEcchhcccc-------------cCCccEEEECCCCCCcc
Confidence            998864   68899999986542             24799999999998643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.41  E-value=6.6e-12  Score=115.26  Aligned_cols=145  Identities=19%  Similarity=0.255  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhcCCCCcHHHHHHHHHhcCCC---ccc-------------ccCcccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450           85 GAASACIVCARSQDDDYHATIKALNSKGRF---PRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (371)
Q Consensus        85 ~~r~~mv~~~~~~~~~~~~~~~~l~~~~~~---~~k-------------~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEI  148 (371)
                      ..|.+||+...+..+....+.++|....+.   |..             ..|+ ++..+.+...++..+...++.+||||
T Consensus         7 ~~~~~~v~~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~l~~~l~~~~~~~VLei   85 (212)
T PRK00312          7 ERFARLVLRLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQ-TISQPYMVARMTELLELKPGDRVLEI   85 (212)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCC-eeCcHHHHHHHHHhcCCCCCCEEEEE
Confidence            468889994335557788999998876443   211             1122 57889999999999999999999999


Q ss_pred             cCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          149 GPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       149 G~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      |||+|++|..+++.+.+|+++|+++.+++.+++++...+  +++++.+|+.+...            ..+.||.|+.+.+
T Consensus        86 G~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~I~~~~~  153 (212)
T PRK00312         86 GTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP------------AYAPFDRILVTAA  153 (212)
T ss_pred             CCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC------------cCCCcCEEEEccC
Confidence            999999999888887799999999999999999987543  79999999865311            2256999887654


Q ss_pred             C-cccHHHHHHhccCCC
Q 017450          227 F-NISTDVIKQLLPMGD  242 (371)
Q Consensus       227 y-~iss~il~~Ll~~g~  242 (371)
                      . ++...+...|.++|.
T Consensus       154 ~~~~~~~l~~~L~~gG~  170 (212)
T PRK00312        154 APEIPRALLEQLKEGGI  170 (212)
T ss_pred             chhhhHHHHHhcCCCcE
Confidence            3 333444444444443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.29  E-value=7.8e-12  Score=116.72  Aligned_cols=97  Identities=19%  Similarity=0.310  Sum_probs=75.8

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      +|-+|.-++.   +........+|||+|||+|.++..++++ . +++++||+++++++.|+++++.++   +++++++|+
T Consensus        28 ~~~~DaiLL~---~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di  104 (248)
T COG4123          28 RYGTDAILLA---AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI  104 (248)
T ss_pred             ccccHHHHHH---hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH
Confidence            3444443333   3344445789999999999999999997 4 799999999999999999987653   899999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      .++...          .....||.||+||||+-..
T Consensus       105 ~~~~~~----------~~~~~fD~Ii~NPPyf~~~  129 (248)
T COG4123         105 KEFLKA----------LVFASFDLIICNPPYFKQG  129 (248)
T ss_pred             HHhhhc----------ccccccCEEEeCCCCCCCc
Confidence            987543          1234699999999996543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.29  E-value=1.8e-11  Score=100.21  Aligned_cols=73  Identities=30%  Similarity=0.437  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      |+.+|||||||+|.++..+++  .+.+|+|||+|+.+++.++++...   .++++++++|+ .....           ..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----------~~   68 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----------FL   68 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----------TS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----------cC
Confidence            578999999999999999999  688999999999999999999832   25999999999 32221           23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +.||+|+.+.
T Consensus        69 ~~~D~v~~~~   78 (112)
T PF12847_consen   69 EPFDLVICSG   78 (112)
T ss_dssp             SCEEEEEECS
T ss_pred             CCCCEEEECC
Confidence            5699999876

...

>PHA03411 putative methyltransferase; Provisional

Probab=99.28  E-value=2.7e-11  Score=114.70  Aligned_cols=109  Identities=14%  Similarity=0.260  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHH
Q 017450          100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVG  177 (371)
Q Consensus       100 ~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~  177 (371)
                      +.+-+.+.+++.++   ...|| |.+++.++..++.  ....+.+|||+|||+|.++..++..  +.+|+++|+++.+++
T Consensus        29 ~~~~v~~~~~g~~~---~~~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~  102 (279)
T PHA03411         29 EKEFCYNNYHGDGL---GGSGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFAR  102 (279)
T ss_pred             cHHHHHHhcccccc---cCcee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            55556666665553   33688 9999999976642  3345679999999999999988875  469999999999999


Q ss_pred             HHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       178 ~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      .+++++   ++++++++|+.++..             ...||.||+|+||...
T Consensus       103 ~Ar~n~---~~v~~v~~D~~e~~~-------------~~kFDlIIsNPPF~~l  139 (279)
T PHA03411        103 IGKRLL---PEAEWITSDVFEFES-------------NEKFDVVISNPPFGKI  139 (279)
T ss_pred             HHHHhC---cCCEEEECchhhhcc-------------cCCCcEEEEcCCcccc
Confidence            999875   378999999987632             2569999999999764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.28  E-value=1.8e-11  Score=108.73  Aligned_cols=86  Identities=23%  Similarity=0.415  Sum_probs=67.3

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+++.+...++.+|||+|||+|.++..+++.+.  +|+++|+++.+++.+++++..++  +++++++|..+..       
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-------   94 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-------   94 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-------
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-------
Confidence            444444444678999999999999999999854  59999999999999999998764  4999999987632       


Q ss_pred             HHHhhccCCCeeEEEecCCCccc
Q 017450          208 LFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                            ....||.|++|+|++..
T Consensus        95 ------~~~~fD~Iv~NPP~~~~  111 (170)
T PF05175_consen   95 ------PDGKFDLIVSNPPFHAG  111 (170)
T ss_dssp             ------CTTCEEEEEE---SBTT
T ss_pred             ------cccceeEEEEccchhcc
Confidence                  24689999999997544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.25  E-value=2.3e-11  Score=100.39  Aligned_cols=79  Identities=28%  Similarity=0.407  Sum_probs=65.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      |.+|||+|||+|.++..+++.+ .+++++|+|+..++.++.++...   ++++++++|+.+....          ...++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~   70 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK   70 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence            5689999999999999999998 89999999999999999998765   3799999999887511          13478


Q ss_pred             eeEEEecCCCccc
Q 017450          218 FAKVVANIPFNIS  230 (371)
Q Consensus       218 ~d~VVaNlPy~is  230 (371)
                      +|+|++|+||...
T Consensus        71 ~D~Iv~npP~~~~   83 (117)
T PF13659_consen   71 FDLIVTNPPYGPR   83 (117)
T ss_dssp             EEEEEE--STTSB
T ss_pred             eEEEEECCCCccc
Confidence            9999999999644

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.23  E-value=6.9e-11  Score=109.49  Aligned_cols=93  Identities=24%  Similarity=0.332  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhh
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~  203 (371)
                      +..++..++......++++|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+ +++++++|+.+..   
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~---   97 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV---   97 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc---
Confidence            445555556666677889999999999999999998765 99999999999999999886543 6788889986531   


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                                ....||.|++|+||...+
T Consensus        98 ----------~~~~fD~Vi~npPy~~~~  115 (223)
T PRK14967         98 ----------EFRPFDVVVSNPPYVPAP  115 (223)
T ss_pred             ----------cCCCeeEEEECCCCCCCC
Confidence                      235799999999997553

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.23  E-value=7.9e-11  Score=115.45  Aligned_cols=97  Identities=25%  Similarity=0.269  Sum_probs=84.2

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccch
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~  200 (371)
                      -.+++.++..|+..+...++++|||+|||+|.++..++..+.+++|+|+|+.|+..++.|+..++  +++++.+|+.+++
T Consensus       164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~  243 (329)
T TIGR01177       164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP  243 (329)
T ss_pred             CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence            45678899999999998999999999999999999888889999999999999999999987543  6789999999876


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      +.            ...+|.|++|+||....
T Consensus       244 ~~------------~~~~D~Iv~dPPyg~~~  262 (329)
T TIGR01177       244 LS------------SESVDAIATDPPYGRST  262 (329)
T ss_pred             cc------------cCCCCEEEECCCCcCcc
Confidence            42            35799999999997654

This family is found exclusively in the Archaea.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.21  E-value=2.5e-10  Score=111.34  Aligned_cols=145  Identities=14%  Similarity=0.126  Sum_probs=105.1

Q ss_pred             HHHHHHhhhcCCCCcHHHHHHHHHhcCCC---cc----------c-----ccCc--ccCCCHHHHHHHHHHhcCCCCCEE
Q 017450           86 AASACIVCARSQDDDYHATIKALNSKGRF---PR----------K-----SLGQ--HYMLNSEINDQLAAAAAVQEGDIV  145 (371)
Q Consensus        86 ~r~~mv~~~~~~~~~~~~~~~~l~~~~~~---~~----------k-----~lGQ--~fl~~~~v~~~i~~~l~~~~~~~V  145 (371)
                      .|+.||+...+..+++ +++++|.+.++.   |.          .     .-|.  .+.+++.+...+++.+.+.++++|
T Consensus         6 ~~~~lv~~l~~~gv~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~V   84 (322)
T PRK13943          6 MREKLFWILKKYGISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRV   84 (322)
T ss_pred             HHHHHHHHHHHcCCcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEE
Confidence            4577888665666777 888888876432   11          1     1121  366789999999999999899999


Q ss_pred             EEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          146 LEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      ||||||+|+++..+++..   .+|+++|+++++++.|++++...+  ++.++++|+.+...            ....+|+
T Consensus        85 LDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~------------~~~~fD~  152 (322)
T PRK13943         85 LEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP------------EFAPYDV  152 (322)
T ss_pred             EEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc------------ccCCccE
Confidence            999999999999999863   369999999999999999887543  78999999876432            1246899


Q ss_pred             EEecCCC-cccHHHHHHhccCCCc
Q 017450          221 VVANIPF-NISTDVIKQLLPMGDI  243 (371)
Q Consensus       221 VVaNlPy-~iss~il~~Ll~~g~~  243 (371)
                      |+.+... ++...++..|.++|.+
T Consensus       153 Ii~~~g~~~ip~~~~~~LkpgG~L  176 (322)
T PRK13943        153 IFVTVGVDEVPETWFTQLKEGGRV  176 (322)
T ss_pred             EEECCchHHhHHHHHHhcCCCCEE
Confidence            8874321 2334455566666543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.20  E-value=8.5e-11  Score=105.05  Aligned_cols=86  Identities=28%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHH
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ..+.+.+...++++|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...+ +++++.+|+.+..         
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---------   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---------
Confidence            334455555567899999999999999999988799999999999999999987544 6888999986642         


Q ss_pred             HhhccCCCeeEEEecCCCccc
Q 017450          210 ERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~is  230 (371)
                           .+.||.|++|+||...
T Consensus        80 -----~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        80 -----RGKFDVILFNPPYLPL   95 (179)
T ss_pred             -----CCcccEEEECCCCCCC
Confidence                 2479999999999644

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.17  E-value=1.5e-10  Score=103.24  Aligned_cols=115  Identities=23%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~  198 (371)
                      +++.+++..-.++.+.+.++++++|||||||..|..++..  ..+|+|||.|+++++..++|.+..+  |++++.||+.+
T Consensus        16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~   95 (187)
T COG2242          16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE   95 (187)
T ss_pred             CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence            4888999999999999999999999999999999999954  5699999999999999999988764  99999999988


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCC---cccHHHHHHhccCCCchhHHHH
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF---NISTDVIKQLLPMGDIFSEVVL  249 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy---~iss~il~~Ll~~g~~~~~~~l  249 (371)
                      ...            +.+.+|.+|-+==-   .+...+..+|.++|.++..++.
T Consensus        96 ~L~------------~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          96 ALP------------DLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             hhc------------CCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            632            22368887743111   2333444566677777655543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.17  E-value=1.4e-10  Score=105.85  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~  203 (371)
                      .+.+.+++.+. ..++.+|||+|||+|.++..++.. ..+|++||+|+.+++.++++++.++  +++++++|+.+.-.  
T Consensus        39 ~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~--  116 (199)
T PRK10909         39 RVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA--  116 (199)
T ss_pred             HHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh--
Confidence            34444444443 246789999999999999876555 4699999999999999999987654  78999999876421  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCc
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                               .....+|+|+.||||.
T Consensus       117 ---------~~~~~fDlV~~DPPy~  132 (199)
T PRK10909        117 ---------QPGTPHNVVFVDPPFR  132 (199)
T ss_pred             ---------hcCCCceEEEECCCCC
Confidence                     0124599999999984

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.14  E-value=3.1e-10  Score=115.62  Aligned_cols=104  Identities=23%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~  205 (371)
                      .+++.+++.+...++++|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++...+  .+++++.+|+.+...... 
T Consensus       284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~-  362 (443)
T PRK13168        284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP-  362 (443)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh-
Confidence            34555666667778899999999999999999998889999999999999999998654  379999999976421000 


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcccHHHHHHhcc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~  239 (371)
                             .....+|+|+.|+||.-..+++.++..
T Consensus       363 -------~~~~~fD~Vi~dPPr~g~~~~~~~l~~  389 (443)
T PRK13168        363 -------WALGGFDKVLLDPPRAGAAEVMQALAK  389 (443)
T ss_pred             -------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence                   012468999999999877777766654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.13  E-value=4.1e-10  Score=111.96  Aligned_cols=87  Identities=16%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-----CeEEEEcccccchhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIR  202 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-----~v~vi~gD~~~~~~~  202 (371)
                      .+.+++.+....+.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++++.+.     +++++.+|+.+..  
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~--  294 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--  294 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC--
Confidence            455667776555679999999999999999987  4699999999999999999986442     5788888886531  


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                                 ....||.|++|+||+.
T Consensus       295 -----------~~~~fDlIlsNPPfh~  310 (378)
T PRK15001        295 -----------EPFRFNAVLCNPPFHQ  310 (378)
T ss_pred             -----------CCCCEEEEEECcCccc
Confidence                       2347999999999974

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.12  E-value=3.3e-10  Score=102.91  Aligned_cols=85  Identities=18%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      .+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+ +++...+|+...++         
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---------   91 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL---------   91 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc---------
Confidence            44455555667899999999999999999999999999999999999988775433 46677777654432         


Q ss_pred             hhccCCCeeEEEecCCCcc
Q 017450          211 RRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy~i  229 (371)
                          .+.+|.|+++.+++.
T Consensus        92 ----~~~fD~I~~~~~~~~  106 (195)
T TIGR00477        92 ----NEDYDFIFSTVVFMF  106 (195)
T ss_pred             ----cCCCCEEEEeccccc
Confidence                246999999888753

Part of a tellurite-reducing operon tehA and tehB

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.1e-10  Score=108.85  Aligned_cols=74  Identities=24%  Similarity=0.446  Sum_probs=61.1

Q ss_pred             EEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      +|||||||+|.++..++....  +|+|+|+|++.++.|++|...++  ++.++++|..+-              ..++||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD  178 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD  178 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence            799999999999999999854  99999999999999999998764  566666665542              235899


Q ss_pred             EEEecCCCcccH
Q 017450          220 KVVANIPFNIST  231 (371)
Q Consensus       220 ~VVaNlPy~iss  231 (371)
                      +||+||||--.+
T Consensus       179 lIVsNPPYip~~  190 (280)
T COG2890         179 LIVSNPPYIPAE  190 (280)
T ss_pred             EEEeCCCCCCCc
Confidence            999999984443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.12  E-value=9.9e-10  Score=98.84  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=75.9

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccc
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF  196 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~  196 (371)
                      +..++.+.+...++..+...++.+|||||||+|.++..+++..  .+|+++|+++.+++.++++....  .+++++.+|+
T Consensus        11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~   90 (187)
T PRK08287         11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA   90 (187)
T ss_pred             CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence            5567888888888899988889999999999999999999863  58999999999999999988654  3789999987


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .. .             ..+.+|.|+++..
T Consensus        91 ~~-~-------------~~~~~D~v~~~~~  106 (187)
T PRK08287         91 PI-E-------------LPGKADAIFIGGS  106 (187)
T ss_pred             hh-h-------------cCcCCCEEEECCC
Confidence            42 1             1246899987754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.12  E-value=5.7e-10  Score=106.09  Aligned_cols=99  Identities=19%  Similarity=0.332  Sum_probs=82.5

Q ss_pred             CcccccCcccCCCH--HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeE
Q 017450          114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK  190 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~--~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~  190 (371)
                      ...+-+|.+|+.+.  .....++..+.+.++.+|||||||+|..+..++.. +++|+|+|+++.+++.++++....++++
T Consensus        23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~  102 (263)
T PTZ00098         23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE  102 (263)
T ss_pred             hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence            34456788888886  34778888888899999999999999999999875 6799999999999999999876555899


Q ss_pred             EEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       191 vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      ++.+|+.+.++.            ...||+|+++
T Consensus       103 ~~~~D~~~~~~~------------~~~FD~V~s~  124 (263)
T PTZ00098        103 FEANDILKKDFP------------ENTFDMIYSR  124 (263)
T ss_pred             EEECCcccCCCC------------CCCeEEEEEh
Confidence            999999876542            3579999985

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.11  E-value=3.9e-10  Score=105.19  Aligned_cols=91  Identities=21%  Similarity=0.365  Sum_probs=75.7

Q ss_pred             ccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEE
Q 017450          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQ  193 (371)
Q Consensus       118 ~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~  193 (371)
                      ++|++    ....+.+++.+...+|.+|||+|||||.+|..+++..  ++|+++|+++.|++.++++..+.+  ++++++
T Consensus        32 S~g~~----~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~  107 (238)
T COG2226          32 SFGLH----RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV  107 (238)
T ss_pred             cCcch----HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence            45554    4456667777777789999999999999999999985  699999999999999999987643  599999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      |||+++++++            ..||.|...
T Consensus       108 ~dAe~LPf~D------------~sFD~vt~~  126 (238)
T COG2226         108 GDAENLPFPD------------NSFDAVTIS  126 (238)
T ss_pred             echhhCCCCC------------CccCEEEee
Confidence            9999999754            568887754

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.11  E-value=1.3e-10  Score=109.26  Aligned_cols=91  Identities=21%  Similarity=0.255  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~  204 (371)
                      +...+++.+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.|++.++++..   ...++.+|+.++++.  
T Consensus        26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~--  100 (251)
T PRK10258         26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLA--  100 (251)
T ss_pred             HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCC--
Confidence            345677778888876677899999999999999999889999999999999999998754   356889999887542  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCccc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                                ...||.|++|.++++.
T Consensus       101 ----------~~~fD~V~s~~~l~~~  116 (251)
T PRK10258        101 ----------TATFDLAWSNLAVQWC  116 (251)
T ss_pred             ----------CCcEEEEEECchhhhc
Confidence                      3579999999877543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.11  E-value=4.5e-10  Score=108.00  Aligned_cols=79  Identities=15%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+..             .
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-------------~  186 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-------------P  186 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-------------C
Confidence            45679999999999999999986  4699999999999999999987543   6899999986521             1


Q ss_pred             CCCeeEEEecCCCcccH
Q 017450          215 SSGFAKVVANIPFNIST  231 (371)
Q Consensus       215 ~~~~d~VVaNlPy~iss  231 (371)
                      ...+|.||+|+||.-..
T Consensus       187 ~~~fD~Iv~NPPy~~~~  203 (284)
T TIGR03533       187 GRKYDLIVSNPPYVDAE  203 (284)
T ss_pred             CCCccEEEECCCCCCcc
Confidence            24699999999996443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.11  E-value=3.4e-10  Score=110.32  Aligned_cols=105  Identities=13%  Similarity=0.098  Sum_probs=79.8

Q ss_pred             cCCCHHHHHHHH----HHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450          123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~----~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~  196 (371)
                      |-+++.+.+.+.    +.+...++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++  +++++.+|+
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~  230 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS  230 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence            445565555554    34443457899999999999999999999999999999999999999987553  799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCccc-HHHHHHhc
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLL  238 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is-s~il~~Ll  238 (371)
                      .++...           ....+|.|+.|+|+... ..++..|.
T Consensus       231 ~~~~~~-----------~~~~~D~Vv~dPPr~G~~~~~~~~l~  262 (315)
T PRK03522        231 TQFATA-----------QGEVPDLVLVNPPRRGIGKELCDYLS  262 (315)
T ss_pred             HHHHHh-----------cCCCCeEEEECCCCCCccHHHHHHHH
Confidence            875321           12458999999998643 34444443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.10  E-value=4.6e-10  Score=112.22  Aligned_cols=81  Identities=17%  Similarity=0.287  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++....+ +++++++|+.+..+.           ..+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-----------~~~  318 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-----------SEG  318 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-----------cCC
Confidence            35679999999999999999875  5799999999999999999987654 799999998764321           124


Q ss_pred             CeeEEEecCCCcccH
Q 017450          217 GFAKVVANIPFNIST  231 (371)
Q Consensus       217 ~~d~VVaNlPy~iss  231 (371)
                      .+|.|++|+||.-..
T Consensus       319 ~FDLIVSNPPYI~~~  333 (423)
T PRK14966        319 KWDIIVSNPPYIENG  333 (423)
T ss_pred             CccEEEECCCCCCcc
Confidence            699999999996543

>PRK14968 putative methyltransferase; Provisional

Probab=99.09  E-value=9.6e-10  Score=98.06  Aligned_cols=89  Identities=22%  Similarity=0.341  Sum_probs=71.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--C--eEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~--v~vi~gD~~~~~~~~~~  205 (371)
                      ...+++.+...++++|||+|||+|.++..++..+.+|+++|+++++++.+++++...+  +  +.++++|+.+..     
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----   86 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-----   86 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-----
Confidence            3445555555678899999999999999999998999999999999999998876433  2  888999986631     


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcccH
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                              ....+|.|++|+||....
T Consensus        87 --------~~~~~d~vi~n~p~~~~~  104 (188)
T PRK14968         87 --------RGDKFDVILFNPPYLPTE  104 (188)
T ss_pred             --------cccCceEEEECCCcCCCC
Confidence                    123699999999997643

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.09  E-value=7e-10  Score=96.34  Aligned_cols=77  Identities=21%  Similarity=0.410  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      +++.+|||+|||+|.++..+++.   +.+++|+|+++.|++.|++++...  ++++++++|+.+++..           -
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-----------~   70 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-----------L   70 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-----------S
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-----------c
Confidence            36789999999999999999953   679999999999999999987654  4899999999996411           0


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      ...+|+|+++.++
T Consensus        71 ~~~~D~I~~~~~l   83 (152)
T PF13847_consen   71 EEKFDIIISNGVL   83 (152)
T ss_dssp             STTEEEEEEESTG
T ss_pred             CCCeeEEEEcCch
Confidence            1579999998775

...

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.09  E-value=5.9e-10  Score=97.18  Aligned_cols=101  Identities=23%  Similarity=0.429  Sum_probs=86.3

Q ss_pred             cccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHhccCCCeEE
Q 017450          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKV  191 (371)
Q Consensus       115 ~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---~V~aIE~d~~~i~~a~~~~~~~~~v~v  191 (371)
                      ..+..|-.-.++.-.+++|.+.++...|.-|||+|+|||.+|..++++|.   .+++||.+++++..+.+.+.   .+++
T Consensus        22 ~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---~~~i   98 (194)
T COG3963          22 NPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---GVNI   98 (194)
T ss_pred             CCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---Cccc
Confidence            44566777788889999999999999999999999999999999999863   79999999999999999875   6779


Q ss_pred             EEcccccch--hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          192 LQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       192 i~gD~~~~~--~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ++||+.++.  +.+         .....+|.||+.+|.
T Consensus        99 i~gda~~l~~~l~e---------~~gq~~D~viS~lPl  127 (194)
T COG3963          99 INGDAFDLRTTLGE---------HKGQFFDSVISGLPL  127 (194)
T ss_pred             cccchhhHHHHHhh---------cCCCeeeeEEecccc
Confidence            999998876  322         245679999998875

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.07  E-value=5.9e-10  Score=101.43  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=67.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      .+++.+...++.+|||+|||+|..+..|++.+.+|+|+|+++.+++.++++....  .+++++.+|+.+.++        
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~--------   92 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF--------   92 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc--------
Confidence            3344455567789999999999999999999999999999999999999887654  368888899877643        


Q ss_pred             HhhccCCCeeEEEecCCCc
Q 017450          210 ERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~  228 (371)
                           .+.||.|+++..++
T Consensus        93 -----~~~fD~I~~~~~~~  106 (197)
T PRK11207         93 -----DGEYDFILSTVVLM  106 (197)
T ss_pred             -----CCCcCEEEEecchh
Confidence                 24699999887643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=2.4e-10  Score=97.32  Aligned_cols=105  Identities=22%  Similarity=0.316  Sum_probs=86.8

Q ss_pred             CCCcccccCcccCCCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC
Q 017450          112 GRFPRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI  186 (371)
Q Consensus       112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~----~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~  186 (371)
                      ..+|+-.+.| |.+.|+++..|+..+..    ..|++++|+|||+|.+....+-.+ ..|+|+|+|++.++.+..|.+..
T Consensus        16 FeKpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf   94 (185)
T KOG3420|consen   16 FEKPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF   94 (185)
T ss_pred             ccccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh
Confidence            3457777888 99999999999987753    467899999999999996666554 47999999999999999998766


Q ss_pred             C-CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          187 D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       187 ~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      . ++.++++|+++..+            ..+.||.+|.|+||.-
T Consensus        95 EvqidlLqcdildle~------------~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen   95 EVQIDLLQCDILDLEL------------KGGIFDTAVINPPFGT  126 (185)
T ss_pred             hhhhheeeeeccchhc------------cCCeEeeEEecCCCCc
Confidence            5 77899999988653            3478999999999953

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.07  E-value=1.5e-09  Score=100.57  Aligned_cols=90  Identities=14%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~  200 (371)
                      .....+.+++.+.+.++++|||||||+|..+..+++.   +.+|+|+|+++.+++.+++++...  ++++++++|+.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  109 (231)
T TIGR02752        30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP  109 (231)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence            4455677888888888999999999999999999975   359999999999999999987643  47899999998865


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.            .+.+|.|+++..+
T Consensus       110 ~~------------~~~fD~V~~~~~l  124 (231)
T TIGR02752       110 FD------------DNSFDYVTIGFGL  124 (231)
T ss_pred             CC------------CCCccEEEEeccc
Confidence            42            3579999987654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.07  E-value=2e-09  Score=89.12  Aligned_cols=91  Identities=19%  Similarity=0.277  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~  200 (371)
                      ..+.+...+++.+.+.++++|||+|||+|.++..+++.  +.+|+++|+++.+++.++++....  ++++++.+|+....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T TIGR02469         3 TKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL   82 (124)
T ss_pred             chHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence            44567778888888888889999999999999999986  468999999999999999887654  47889999877531


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      ..           ..+.+|.|+...+
T Consensus        83 ~~-----------~~~~~D~v~~~~~   97 (124)
T TIGR02469        83 ED-----------SLPEPDRVFIGGS   97 (124)
T ss_pred             hh-----------hcCCCCEEEECCc
Confidence            10           1256899887544

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.06  E-value=1.4e-09  Score=103.39  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=69.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhcc-----CCCeEEEEcccccch
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCH  200 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~-----~~~v~vi~gD~~~~~  200 (371)
                      ....+++.+.+.++++|||+|||+|.++..+++. +  .+|+|+|++++|++.|+++...     ..+++++++|+.+++
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            3444556667778899999999999999999886 3  5899999999999999877531     247999999999887


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.            .+.||.|+++.-+
T Consensus       141 ~~------------~~sfD~V~~~~~l  155 (261)
T PLN02233        141 FD------------DCYFDAITMGYGL  155 (261)
T ss_pred             CC------------CCCEeEEEEeccc
Confidence            53            3579999886543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.06  E-value=1.3e-09  Score=101.86  Aligned_cols=90  Identities=21%  Similarity=0.366  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~  203 (371)
                      .++..++..+. ..+.+|||+|||+|.++..++..  +.+++|+|+++.+++.++++....+  +++++++|+.+. +  
T Consensus        75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~--  150 (251)
T TIGR03534        75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-L--  150 (251)
T ss_pred             HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-C--
Confidence            44555555554 34568999999999999999986  5699999999999999999886543  699999998763 1  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                                ..+.+|.|++|+||.-..
T Consensus       151 ----------~~~~fD~Vi~npPy~~~~  168 (251)
T TIGR03534       151 ----------PGGKFDLIVSNPPYIPEA  168 (251)
T ss_pred             ----------cCCceeEEEECCCCCchh
Confidence                      235799999999997544

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.06  E-value=1.4e-09  Score=102.82  Aligned_cols=92  Identities=22%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh
Q 017450          129 INDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       129 v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~  205 (371)
                      +++.++..+.. ..+.+|||+|||+|.++..++..  +.+|+++|+|+.+++.|++|...++ ++++++|+.+....   
T Consensus        73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~---  148 (251)
T TIGR03704        73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPT---  148 (251)
T ss_pred             HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcch---
Confidence            34444443332 23458999999999999999875  4689999999999999999987543 68899998763211   


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcccH
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                             ...+.+|+||+|+||.-+.
T Consensus       149 -------~~~~~fDlVv~NPPy~~~~  167 (251)
T TIGR03704       149 -------ALRGRVDILAANAPYVPTD  167 (251)
T ss_pred             -------hcCCCEeEEEECCCCCCch
Confidence                   0124699999999996543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.05  E-value=4.8e-10  Score=103.50  Aligned_cols=151  Identities=22%  Similarity=0.282  Sum_probs=96.2

Q ss_pred             HHHHhcCCCcccccCcccCCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450          106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       106 ~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~  182 (371)
                      +.+......+...+.+--.+++.-...|.+.+..   .++.+|||||||-|.|+..||+.|++|+|+|+++++++.|+..
T Consensus        21 ~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~h  100 (243)
T COG2227          21 EALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLH  100 (243)
T ss_pred             HHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHh
Confidence            3444444455556666555555555556555553   4788999999999999999999999999999999999999988


Q ss_pred             hccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec-CCCcccHHH-----HHHhc-cCCCch---------h
Q 017450          183 FASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDV-----IKQLL-PMGDIF---------S  245 (371)
Q Consensus       183 ~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-lPy~iss~i-----l~~Ll-~~g~~~---------~  245 (371)
                      ....+ +++.....+.++..            ..++||+|++. .--+++.|-     ..+++ ++|..+         .
T Consensus       101 a~e~gv~i~y~~~~~edl~~------------~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka  168 (243)
T COG2227         101 ALESGVNIDYRQATVEDLAS------------AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKA  168 (243)
T ss_pred             hhhccccccchhhhHHHHHh------------cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence            76544 44455555555421            23689999875 222333221     22333 333322         2


Q ss_pred             HHHHHhhhhHHhhhccCCCCCCCCc
Q 017450          246 EVVLLLQEETALRLVEPSLRTSEYR  270 (371)
Q Consensus       246 ~~~lmvQke~a~rl~~a~pg~k~Yg  270 (371)
                      .+...++-|...|+.  ..|++.|+
T Consensus       169 ~~~~i~~ae~vl~~v--P~gTH~~~  191 (243)
T COG2227         169 YLLAIIGAEYVLRIV--PKGTHDYR  191 (243)
T ss_pred             HHHHHHHHHHHHHhc--CCcchhHH
Confidence            344455566666655  34566664

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.05  E-value=2.1e-10  Score=102.92  Aligned_cols=138  Identities=18%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      .|.+++  .++.+|||+|||.|.+..+|.+. +.+.+|||+|++.+..+.++     .+.++++|+.+- +..       
T Consensus         6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~g-L~~-------   70 (193)
T PF07021_consen    6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEG-LAD-------   70 (193)
T ss_pred             HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHh-Hhh-------
Confidence            344444  47899999999999999999884 78999999999999888776     788999999873 211       


Q ss_pred             hhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCc-ceeeeeeeeccceEEEEeC
Q 017450          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYR-PINIFVNFYSEPEYKFKVP  289 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg-~Lsv~~q~~~~~~~~~~Vp  289 (371)
                        .+...||.||       .++.+.++......+.+|.     .++.+.+...|+...|. ++.++        +.-+.|
T Consensus        71 --f~d~sFD~VI-------lsqtLQ~~~~P~~vL~Eml-----RVgr~~IVsFPNFg~W~~R~~l~--------~~GrmP  128 (193)
T PF07021_consen   71 --FPDQSFDYVI-------LSQTLQAVRRPDEVLEEML-----RVGRRAIVSFPNFGHWRNRLQLL--------LRGRMP  128 (193)
T ss_pred             --CCCCCccEEe-------hHhHHHhHhHHHHHHHHHH-----HhcCeEEEEecChHHHHHHHHHH--------hcCCCC
Confidence              2457899988       5566666655444455543     34444443556554443 22222        234688


Q ss_pred             CCCcccCCCCceEEEEE
Q 017450          290 RTNFFPQPKVDAAVVTF  306 (371)
Q Consensus       290 ~~~F~P~PkVdS~vv~l  306 (371)
                      -+...|.+..|+--+++
T Consensus       129 vt~~lPy~WYdTPNih~  145 (193)
T PF07021_consen  129 VTKALPYEWYDTPNIHL  145 (193)
T ss_pred             CCCCCCCcccCCCCccc
Confidence            88889988888765554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.04  E-value=9.1e-10  Score=104.71  Aligned_cols=81  Identities=21%  Similarity=0.357  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      .-++.+++.+.+++|++|||||||.|.++..+|+. +.+|+|+++|+++.+.+++++...+   +++++..|..+++   
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---  135 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---  135 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence            34667888999999999999999999999999998 8999999999999999999887543   8999999988863   


Q ss_pred             hhhhHHHhhccCCCeeEEEe
Q 017450          204 HMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVa  223 (371)
                                  +.||.|||
T Consensus       136 ------------e~fDrIvS  143 (283)
T COG2230         136 ------------EPFDRIVS  143 (283)
T ss_pred             ------------cccceeee
Confidence                        34999995

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.04  E-value=1.1e-09  Score=106.35  Aligned_cols=76  Identities=14%  Similarity=0.285  Sum_probs=63.7

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+..             ....
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-------------~~~~  201 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-------------PGRR  201 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-------------CCCC
Confidence            68999999999999999986  4699999999999999999987543   6999999986521             1246


Q ss_pred             eeEEEecCCCcccH
Q 017450          218 FAKVVANIPFNIST  231 (371)
Q Consensus       218 ~d~VVaNlPy~iss  231 (371)
                      +|.|++|+||.-..
T Consensus       202 fDlIvsNPPyi~~~  215 (307)
T PRK11805        202 YDLIVSNPPYVDAE  215 (307)
T ss_pred             ccEEEECCCCCCcc
Confidence            99999999996543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.04  E-value=1.4e-09  Score=104.60  Aligned_cols=91  Identities=18%  Similarity=0.315  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhh
Q 017450          129 INDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (371)
Q Consensus       129 v~~~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~  202 (371)
                      ++..++..+.... +.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|+++...++   +++++.+|+.+. + 
T Consensus       101 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~-  178 (284)
T TIGR00536       101 LVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L-  178 (284)
T ss_pred             HHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C-
Confidence            3444444332223 369999999999999999986  3699999999999999999987543   499999998762 1 


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~iss~  232 (371)
                                 ....+|+||+|+||--.++
T Consensus       179 -----------~~~~fDlIvsNPPyi~~~~  197 (284)
T TIGR00536       179 -----------AGQKIDIIVSNPPYIDEED  197 (284)
T ss_pred             -----------cCCCccEEEECCCCCCcch
Confidence                       1236999999999965543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.03  E-value=8.4e-10  Score=103.15  Aligned_cols=87  Identities=20%  Similarity=0.347  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~  201 (371)
                      ..+.+.+++.+...+|.+|||+|||||.+|..+++.   ..+|+++|+++.|++.++++....  .+++++++|+.++++
T Consensus        33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~  112 (233)
T PF01209_consen   33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF  112 (233)
T ss_dssp             ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence            344456666777888999999999999999999986   258999999999999999998754  389999999999987


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecC
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      .            .+.||.|++..
T Consensus       113 ~------------d~sfD~v~~~f  124 (233)
T PF01209_consen  113 P------------DNSFDAVTCSF  124 (233)
T ss_dssp             -------------TT-EEEEEEES
T ss_pred             C------------CCceeEEEHHh
Confidence            4            36799888643

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02244 tocopherol O-methyltransferase

Probab=99.03  E-value=1.7e-09  Score=106.54  Aligned_cols=87  Identities=18%  Similarity=0.191  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhcC-----CCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          128 EINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       128 ~v~~~i~~~l~~-----~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      .+++.+++.+.+     .++++|||||||+|.++..+++. +++|+|||+++.+++.++++....   ++++++.+|+.+
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            466777777776     67889999999999999999986 789999999999999999887643   379999999988


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      +++.            .+.||+|+++.-
T Consensus       180 ~~~~------------~~~FD~V~s~~~  195 (340)
T PLN02244        180 QPFE------------DGQFDLVWSMES  195 (340)
T ss_pred             CCCC------------CCCccEEEECCc
Confidence            7652            367999998643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.03  E-value=7.8e-10  Score=104.40  Aligned_cols=83  Identities=25%  Similarity=0.339  Sum_probs=68.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.++++     +++++++|+.++.       
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~-------   85 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK-------   85 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC-------
Confidence            456777777778899999999999999999987  67999999999999999764     6889999987652       


Q ss_pred             HHHhhccCCCeeEEEecCCCccc
Q 017450          208 LFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                            ..+.||.|++|..++..
T Consensus        86 ------~~~~fD~v~~~~~l~~~  102 (255)
T PRK14103         86 ------PKPDTDVVVSNAALQWV  102 (255)
T ss_pred             ------CCCCceEEEEehhhhhC
Confidence                  13579999999876543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.02  E-value=1.6e-09  Score=87.54  Aligned_cols=81  Identities=23%  Similarity=0.434  Sum_probs=61.7

Q ss_pred             EEEEcCcccHHHHHHHHhC-----CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       145 VLEIG~G~G~lt~~La~~~-----~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      |||+|||+|..+..+++..     .+++++|+|++|++.++++....+ +++++++|+.+++..            .+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~------------~~~~   68 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS------------DGKF   68 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH------------SSSE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc------------CCCe
Confidence            7999999999999999873     799999999999999999986543 899999999987642            3589


Q ss_pred             eEEEe-cC-CCcccHHHHHHh
Q 017450          219 AKVVA-NI-PFNISTDVIKQL  237 (371)
Q Consensus       219 d~VVa-Nl-Py~iss~il~~L  237 (371)
                      |+|++ +. ..+++.+-+..+
T Consensus        69 D~v~~~~~~~~~~~~~~~~~l   89 (101)
T PF13649_consen   69 DLVVCSGLSLHHLSPEELEAL   89 (101)
T ss_dssp             EEEEE-TTGGGGSSHHHHHHH
T ss_pred             eEEEEcCCccCCCCHHHHHHH
Confidence            99998 33 233555444443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.02  E-value=1.8e-09  Score=97.07  Aligned_cols=72  Identities=19%  Similarity=0.328  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++++|||||||+|.++..++..  +.+|+|||.++.|++.++++.+..  ++++++++|+.++.             ..+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-------------~~~  108 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-------------HEE  108 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-------------ccC
Confidence            4789999999999999999875  358999999999999999887654  37999999998752             135


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      .+|.|++|.
T Consensus       109 ~fD~I~s~~  117 (181)
T TIGR00138       109 QFDVITSRA  117 (181)
T ss_pred             CccEEEehh
Confidence            799999885

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.01  E-value=2.1e-09  Score=105.85  Aligned_cols=85  Identities=19%  Similarity=0.270  Sum_probs=67.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ..+++.+......+|||+|||+|.++..+++..  .+|+++|+++.+++.++++++.++ ..+++.+|+.+.        
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--------  257 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--------  257 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--------
Confidence            445555554455689999999999999999874  589999999999999999987654 456777887542        


Q ss_pred             HHHhhccCCCeeEEEecCCCcc
Q 017450          208 LFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                            ..+.||.||+|+||+.
T Consensus       258 ------~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        258 ------IKGRFDMIISNPPFHD  273 (342)
T ss_pred             ------cCCCccEEEECCCccC
Confidence                  1357999999999974

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.01  E-value=1.6e-09  Score=103.54  Aligned_cols=81  Identities=26%  Similarity=0.383  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      ..++.+++.+.+++|++|||||||.|.++..+++. |++|+||.++++..+.+++++...+   ++++..+|..+++   
T Consensus        49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---  125 (273)
T PF02353_consen   49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---  125 (273)
T ss_dssp             HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence            44677888999999999999999999999999998 9999999999999999999988654   7899999987753   


Q ss_pred             hhhhHHHhhccCCCeeEEEe
Q 017450          204 HMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVa  223 (371)
                                  ++||.||+
T Consensus       126 ------------~~fD~IvS  133 (273)
T PF02353_consen  126 ------------GKFDRIVS  133 (273)
T ss_dssp             -------------S-SEEEE
T ss_pred             ------------CCCCEEEE
Confidence                        37999986

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.00  E-value=2.2e-09  Score=97.09  Aligned_cols=74  Identities=20%  Similarity=0.265  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      +.++.+|||||||+|.++..++..  +++|+++|+++.|++.|+++.+..+  +++++++|+.++..             
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-------------  109 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-------------  109 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------
Confidence            345789999999999999999874  5799999999999999999887654  69999999988642             


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .++||.|++|.
T Consensus       110 ~~~fDlV~~~~  120 (187)
T PRK00107        110 EEKFDVVTSRA  120 (187)
T ss_pred             CCCccEEEEcc
Confidence            25799999874

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.00  E-value=1.7e-09  Score=102.07  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ..+++.+. .++.+|||||||+|.++..+++.+.+|+++|++++|++.|+++....   ++++++++|+.++...     
T Consensus        35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-----  108 (255)
T PRK11036         35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-----  108 (255)
T ss_pred             HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----
Confidence            45555555 45679999999999999999999999999999999999999988654   3789999999876321     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                            ..+.||+|+++..+
T Consensus       109 ------~~~~fD~V~~~~vl  122 (255)
T PRK11036        109 ------LETPVDLILFHAVL  122 (255)
T ss_pred             ------cCCCCCEEEehhHH
Confidence                  23579999976543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.00  E-value=3e-09  Score=101.01  Aligned_cols=90  Identities=22%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhc-c-CCCeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~-~-~~~v~vi~gD~~~~~~~~  203 (371)
                      .+++.+.......++.+|||+|||+|.++..++...  .+|+|+|+++.+++.+++++. . ..+++++++|+.+..   
T Consensus        95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---  171 (275)
T PRK09328         95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---  171 (275)
T ss_pred             HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---
Confidence            445555545555677899999999999999999874  789999999999999999986 2 237999999985531   


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                                ..+.+|+|++|+||.-.
T Consensus       172 ----------~~~~fD~Iv~npPy~~~  188 (275)
T PRK09328        172 ----------PGGRFDLIVSNPPYIPE  188 (275)
T ss_pred             ----------CCCceeEEEECCCcCCc
Confidence                      12579999999999544

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.00  E-value=2.1e-09  Score=107.25  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=80.7

Q ss_pred             cCCCHHHHHHHHHH----hcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450          123 YMLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~----l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~  196 (371)
                      |-++..+.+.+.+.    +...++.+|||+|||+|.++..++..+.+|+|||+|+.+++.|+++.+.++  +++++.+|+
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~  290 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS  290 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            56677777766653    333456899999999999999999888899999999999999999987654  799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCcc-cHHHHHHhc
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL  238 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i-ss~il~~Ll  238 (371)
                      .+....           ....+|+||.||||.- ...++..+.
T Consensus       291 ~~~~~~-----------~~~~~D~vi~DPPr~G~~~~~l~~l~  322 (374)
T TIGR02085       291 AKFATA-----------QMSAPELVLVNPPRRGIGKELCDYLS  322 (374)
T ss_pred             HHHHHh-----------cCCCCCEEEECCCCCCCcHHHHHHHH
Confidence            765311           1135899999999964 344444443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.99  E-value=7.5e-10  Score=100.34  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=77.2

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      ..++..+......+|.|+|||+|.+|..|+++  ++.|+|||-|++|++.|+.+.   +++++..+|+.++.        
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--------   88 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--------   88 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--------
Confidence            45666777778899999999999999999998  789999999999999998876   48999999998874        


Q ss_pred             HHhhccCCCeeEEEecCCCcccH-------HHHHHhccCCC
Q 017450          209 FERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGD  242 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy~iss-------~il~~Ll~~g~  242 (371)
                           .....|++++|--+++..       .++.+|.++|-
T Consensus        89 -----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~  124 (257)
T COG4106          89 -----PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV  124 (257)
T ss_pred             -----CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCce
Confidence                 335689999997766543       34445555543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.97  E-value=3.2e-09  Score=107.77  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=78.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~  206 (371)
                      +.+.+.+.+...++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..++  +++++.+|+.+....    
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~----  355 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK----  355 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH----
Confidence            44555666666778899999999999999999988899999999999999999987543  899999999764211    


Q ss_pred             hHHHhhccCCCeeEEEecCCCcc-cHHHHHHhc
Q 017450          207 SLFERRKSSSGFAKVVANIPFNI-STDVIKQLL  238 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~i-ss~il~~Ll  238 (371)
                       +.   .....+|+|+.|+|+.- ...++..+.
T Consensus       356 -~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~  384 (431)
T TIGR00479       356 -QP---WAGQIPDVLLLDPPRKGCAAEVLRTII  384 (431)
T ss_pred             -HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence             00   01245899999999854 455655443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.96  E-value=3.1e-09  Score=109.93  Aligned_cols=79  Identities=18%  Similarity=0.368  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+..             ..
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-------------~~  204 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-------------EK  204 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-------------cC
Confidence            3468999999999999999875  5799999999999999999986543   6899999986521             12


Q ss_pred             CCeeEEEecCCCcccHH
Q 017450          216 SGFAKVVANIPFNISTD  232 (371)
Q Consensus       216 ~~~d~VVaNlPy~iss~  232 (371)
                      ..||+||+|+||...++
T Consensus       205 ~~fDlIvsNPPYi~~~~  221 (506)
T PRK01544        205 QKFDFIVSNPPYISHSE  221 (506)
T ss_pred             CCccEEEECCCCCCchh
Confidence            46999999999976543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.96  E-value=2.3e-09  Score=103.98  Aligned_cols=106  Identities=24%  Similarity=0.352  Sum_probs=76.0

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---------hCCeEEEEeCCHHHHHHHHHHhc
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~---------~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ..++..|| |.++..+++.|+..+...++++|+|..||+|.+...+.+         ...+++|+|+|+.++..++-++.
T Consensus        20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            45678899 889999999999999988899999999999998877765         24589999999999999887764


Q ss_pred             cCC----CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          185 SID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       185 ~~~----~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      -.+    +..+..+|.+..+...          ....+|+|++||||...
T Consensus        99 l~~~~~~~~~i~~~d~l~~~~~~----------~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen   99 LHGIDNSNINIIQGDSLENDKFI----------KNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HTTHHCBGCEEEES-TTTSHSCT----------ST--EEEEEEE--CTCE
T ss_pred             hhccccccccccccccccccccc----------cccccccccCCCCcccc
Confidence            222    4568899987654321          13579999999999765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.96  E-value=3.5e-09  Score=99.88  Aligned_cols=85  Identities=19%  Similarity=0.354  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      ....++..+...++++|||||||+|.++..+++.  +.+|+|||+++.|++.+++++   ++++++.+|+.++.      
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~------   89 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ------   89 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC------
Confidence            4556777777778899999999999999999986  579999999999999999886   37889999987653      


Q ss_pred             hHHHhhccCCCeeEEEecCCCcc
Q 017450          207 SLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                             ....+|.|++|..++.
T Consensus        90 -------~~~~fD~v~~~~~l~~  105 (258)
T PRK01683         90 -------PPQALDLIFANASLQW  105 (258)
T ss_pred             -------CCCCccEEEEccChhh
Confidence                   1247999999977644

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.95  E-value=5.2e-09  Score=96.43  Aligned_cols=82  Identities=27%  Similarity=0.347  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450          128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       128 ~v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~  202 (371)
                      .+...+++.+.  ..++++|||||||+|.++..++..+.+|+|+|+++.|+..|++++...   .++++.++|+.+.+  
T Consensus        40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--  117 (219)
T TIGR02021        40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--  117 (219)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence            44556666665  457889999999999999999998889999999999999999988643   27899999987752  


Q ss_pred             hhhhhHHHhhccCCCeeEEEec
Q 017450          203 SHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                                   +.||.|+++
T Consensus       118 -------------~~fD~ii~~  126 (219)
T TIGR02021       118 -------------GEFDIVVCM  126 (219)
T ss_pred             -------------CCcCEEEEh
Confidence                         468988864

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.94  E-value=2.5e-09  Score=97.66  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccc-ccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~-~~~~~~~~~~~l~~~~~~~  215 (371)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.++++....  ++++++++|+ ..++..          ...
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~  109 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD  109 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence            5679999999999999999886  468999999999999999987644  4899999999 544310          123


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      ..+|.|+.|.|
T Consensus       110 ~~~D~V~~~~~  120 (202)
T PRK00121        110 GSLDRIYLNFP  120 (202)
T ss_pred             cccceEEEECC
Confidence            56999999865

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.94  E-value=1.2e-08  Score=92.87  Aligned_cols=94  Identities=21%  Similarity=0.316  Sum_probs=75.5

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQED  195 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD  195 (371)
                      ..++.+++....+..+.+.++++|||+|||+|.++..++..   +.+|+++|+++.+++.+++++..++   +++++.+|
T Consensus        21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d  100 (198)
T PRK00377         21 IPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE  100 (198)
T ss_pred             CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            45777788777788888999999999999999999998864   3589999999999999999876543   78999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      +.+....           ..+.+|.|+.+..
T Consensus       101 ~~~~l~~-----------~~~~~D~V~~~~~  120 (198)
T PRK00377        101 APEILFT-----------INEKFDRIFIGGG  120 (198)
T ss_pred             hhhhHhh-----------cCCCCCEEEECCC
Confidence            8764211           1256899998653

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.93  E-value=6.3e-09  Score=94.21  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             cCCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      ..++..+.+.+...+. ...+.+|||++||+|.++..++.+|+ +|++||.|+.+++.+++|++..+   +++++.+|+.
T Consensus        30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            4556666666666553 23578999999999999999999976 89999999999999999987543   6899999996


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +.-..     +.   .....+|+|+.+|||.
T Consensus       110 ~~l~~-----~~---~~~~~~dvv~~DPPy~  132 (189)
T TIGR00095       110 RALKF-----LA---KKPTFDNVIYLDPPFF  132 (189)
T ss_pred             HHHHH-----hh---ccCCCceEEEECcCCC
Confidence            64210     00   0123479999999995

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.92  E-value=4.2e-09  Score=94.52  Aligned_cols=96  Identities=20%  Similarity=0.258  Sum_probs=73.2

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--Ce---------EEEEeCCHHHHHHHHHHhccCC---C
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--AT---------VLAIEKDQHMVGLVRERFASID---Q  188 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~---------V~aIE~d~~~i~~a~~~~~~~~---~  188 (371)
                      --+++.++..|+..+...+++.|||.-||+|.+....+..+  ..         ++|.|+|+++++.+++|+...+   .
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            45778999999999999999999999999999988777653  23         7899999999999999997654   6


Q ss_pred             eEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       189 v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      +.+.++|+.++++            ..+.+|.||+|+||...
T Consensus        90 i~~~~~D~~~l~~------------~~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   90 IDFIQWDARELPL------------PDGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EEEEE--GGGGGG------------TTSBSCEEEEE--STTS
T ss_pred             eEEEecchhhccc------------ccCCCCEEEECcchhhh
Confidence            8899999999873            23578999999999764

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.92  E-value=6.4e-09  Score=97.87  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .++.+|||||||+|.++..+++.    +.+|+|+|+++.|++.|++++...   .+++++++|+.++++           
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----------  123 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----------  123 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence            46789999999999999988872    579999999999999999998753   279999999987643           


Q ss_pred             ccCCCeeEEEecCCC
Q 017450          213 KSSSGFAKVVANIPF  227 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy  227 (371)
                         +.+|.|++|..+
T Consensus       124 ---~~~D~vv~~~~l  135 (247)
T PRK15451        124 ---ENASMVVLNFTL  135 (247)
T ss_pred             ---CCCCEEehhhHH
Confidence               347888887654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.91  E-value=3.3e-09  Score=97.65  Aligned_cols=92  Identities=22%  Similarity=0.290  Sum_probs=75.8

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEE-cc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-ED  195 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~-gD  195 (371)
                      .+..++....+..++...++++|||||+++|++|.+||..   ..++++||+|+++++.|+++++..+   .+.++. ||
T Consensus        41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd  120 (219)
T COG4122          41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD  120 (219)
T ss_pred             CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence            4445888888888888889999999999999999999985   3589999999999999999998765   588888 58


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      +++.-..          ...+.||.|+..
T Consensus       121 al~~l~~----------~~~~~fDliFID  139 (219)
T COG4122         121 ALDVLSR----------LLDGSFDLVFID  139 (219)
T ss_pred             HHHHHHh----------ccCCCccEEEEe
Confidence            8875321          124789999864

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=5.1e-09  Score=100.39  Aligned_cols=99  Identities=25%  Similarity=0.351  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-C--eEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q--LKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~--v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++.+|||+|||+|.|++..++.|+ +|+|+|+|+-.++.+++|...++ .  ++.-..+..+.             ....
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-------------~~~~  228 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-------------PENG  228 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-------------cccC
Confidence            889999999999999999999987 69999999999999999988654 1  12222222222             1235


Q ss_pred             CeeEEEecCCCcc----cHHHHHHhccCCCchhHHHHHhh
Q 017450          217 GFAKVVANIPFNI----STDVIKQLLPMGDIFSEVVLLLQ  252 (371)
Q Consensus       217 ~~d~VVaNlPy~i----ss~il~~Ll~~g~~~~~~~lmvQ  252 (371)
                      ++|+||+|+-=.+    ..++...+.++|.++-+.++--|
T Consensus       229 ~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q  268 (300)
T COG2264         229 PFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ  268 (300)
T ss_pred             cccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence            8999999973211    22334455555655544444433

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.91  E-value=5.8e-09  Score=101.87  Aligned_cols=73  Identities=25%  Similarity=0.249  Sum_probs=61.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++.+|||||||+|.++..+++.|++|+|||.++++++.|+++....   .+++++++|+.+++.            ..+
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------------~~~  197 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------------EGR  197 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------------ccC
Confidence            35679999999999999999998999999999999999999876532   378999999987653            235


Q ss_pred             CeeEEEec
Q 017450          217 GFAKVVAN  224 (371)
Q Consensus       217 ~~d~VVaN  224 (371)
                      .||+|++.
T Consensus       198 ~FD~Vi~~  205 (322)
T PLN02396        198 KFDAVLSL  205 (322)
T ss_pred             CCCEEEEh
Confidence            79999864

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.91  E-value=3.7e-09  Score=109.96  Aligned_cols=106  Identities=15%  Similarity=0.267  Sum_probs=80.5

Q ss_pred             cccCcccCCCHHHHHHHHHHhcCC-------CCCEEEEEcCcccHHHHHHHHhC----------CeEEEEeCCHHHHHHH
Q 017450          117 KSLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLV  179 (371)
Q Consensus       117 k~lGQ~fl~~~~v~~~i~~~l~~~-------~~~~VLEIG~G~G~lt~~La~~~----------~~V~aIE~d~~~i~~a  179 (371)
                      |..|| |.|++.+++.|++.+...       .+.+|||.|||+|.+...++...          .+++|+|+|+..+..+
T Consensus         1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a   79 (524)
T TIGR02987         1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA   79 (524)
T ss_pred             CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence            56899 999999999999887432       34589999999999998887631          4689999999999999


Q ss_pred             HHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          180 RERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       180 ~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      +.++...+  .+.+.++|.+...+...     .  ...+.||+||+||||.-.
T Consensus        80 ~~~l~~~~~~~~~i~~~d~l~~~~~~~-----~--~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        80 KKLLGEFALLEINVINFNSLSYVLLNI-----E--SYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHHHhhcCCCCceeeeccccccccccc-----c--cccCcccEEEeCCCcccc
Confidence            99886654  56777788765332100     0  113579999999999643

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.91  E-value=6.5e-09  Score=100.01  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .++.+|||+|||+|..+..+++.|.+|+|+|+++.+++.++++....+ ++++..+|+...++             .+.|
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-------------~~~f  185 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-------------QEEY  185 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-------------cCCc
Confidence            345699999999999999999999999999999999999998876544 78888888766432             2569


Q ss_pred             eEEEecCCC
Q 017450          219 AKVVANIPF  227 (371)
Q Consensus       219 d~VVaNlPy  227 (371)
                      |.|+++..+
T Consensus       186 D~I~~~~vl  194 (287)
T PRK12335        186 DFILSTVVL  194 (287)
T ss_pred             cEEEEcchh
Confidence            999987654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.90  E-value=1.1e-08  Score=93.85  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ..++.+|||||||+|.++..+++.  +.+++|||+++.|++.|+++..   +++++++|+.+ ++            ...
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---~~~~~~~d~~~-~~------------~~~  104 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---NINIIQGSLFD-PF------------KDN  104 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---CCcEEEeeccC-CC------------CCC
Confidence            346779999999999999999886  5799999999999999998753   67888999877 33            236


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      .||+|++|--
T Consensus       105 sfD~V~~~~v  114 (204)
T TIGR03587       105 FFDLVLTKGV  114 (204)
T ss_pred             CEEEEEECCh
Confidence            7999997654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.90  E-value=1e-08  Score=99.84  Aligned_cols=84  Identities=15%  Similarity=0.235  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC----CeEEEE-cccccchhhhhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~-gD~~~~~~~~~~~~l~~~~~  213 (371)
                      .+.+|||||||+|.+...|+..  +.+++|+|+|+.+++.|+++++.++    +++++. .|..++...     +.   .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-----i~---~  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-----II---H  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-----cc---c
Confidence            4579999999999888888765  6799999999999999999998763    566654 333222100     00   1


Q ss_pred             cCCCeeEEEecCCCcccHH
Q 017450          214 SSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       214 ~~~~~d~VVaNlPy~iss~  232 (371)
                      ..+.||.|++||||+.+.+
T Consensus       186 ~~~~fDlivcNPPf~~s~~  204 (321)
T PRK11727        186 KNERFDATLCNPPFHASAA  204 (321)
T ss_pred             cCCceEEEEeCCCCcCcch
Confidence            2357999999999987754

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=7.7e-09  Score=98.77  Aligned_cols=91  Identities=22%  Similarity=0.335  Sum_probs=72.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.+++.+....+.+|||+|||.|.+++.+++..  .+|+-+|+|...++.+++|...++  +..++..|..+-      
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------  220 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------  220 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------
Confidence            4567777777766799999999999999999985  589999999999999999998653  435677776542      


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcccHHHH
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNISTDVI  234 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il  234 (371)
                              ..++||.||+||||+-...+.
T Consensus       221 --------v~~kfd~IisNPPfh~G~~v~  241 (300)
T COG2813         221 --------VEGKFDLIISNPPFHAGKAVV  241 (300)
T ss_pred             --------ccccccEEEeCCCccCCcchh
Confidence                    124799999999997654443

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.90  E-value=7.3e-09  Score=93.93  Aligned_cols=76  Identities=21%  Similarity=0.360  Sum_probs=66.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~  198 (371)
                      .++...+...+++.+.+.++++|||+|||+|.++..++..  +.+|+++|+|+++++.+++++...  .+++++.+|+.+
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            5778888888999998888999999999999999999865  479999999999999999998654  379999999865

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=6.6e-09  Score=81.49  Aligned_cols=70  Identities=27%  Similarity=0.425  Sum_probs=57.5

Q ss_pred             EEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      ||+|||+|..+..+++. +.+|+++|+++.+++.++++... .++.+..+|+.++++.            .+.+|.|+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~------------~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFP------------DNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-------------TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCccc------------cccccccccc
Confidence            89999999999999999 88999999999999999998864 3577999999998763            4679999987


Q ss_pred             CCCc
Q 017450          225 IPFN  228 (371)
Q Consensus       225 lPy~  228 (371)
                      --++
T Consensus        68 ~~~~   71 (95)
T PF08241_consen   68 SVLH   71 (95)
T ss_dssp             SHGG
T ss_pred             ccee
Confidence            5543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.88  E-value=8.6e-09  Score=96.42  Aligned_cols=98  Identities=16%  Similarity=0.132  Sum_probs=76.0

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+++.....+...+...++++|||||||+|+.+.+++..   +.+|+++|+|+++++.|+++++..+   +++++.||+
T Consensus        50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda  129 (234)
T PLN02781         50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA  129 (234)
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence            3567777777777777778899999999999999999875   4699999999999999999997654   799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .+.-..     +.++ ...+.||.|+.+.+
T Consensus       130 ~~~L~~-----l~~~-~~~~~fD~VfiDa~  153 (234)
T PLN02781        130 LSALDQ-----LLNN-DPKPEFDFAFVDAD  153 (234)
T ss_pred             HHHHHH-----HHhC-CCCCCCCEEEECCC
Confidence            875211     1100 01357999998753

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.88  E-value=1.6e-08  Score=96.49  Aligned_cols=89  Identities=13%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC-----CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~-----~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..+.+|||||||+|.++..+++..     ..|+|+|+++.+++.|+++.   ++++++.+|+.++++.            
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~------------  148 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFA------------  148 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCc------------
Confidence            355789999999999999998752     37999999999999998774   4789999999887653            


Q ss_pred             CCCeeEEEecCCCcccHHHHHHhccCCCc
Q 017450          215 SSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (371)
Q Consensus       215 ~~~~d~VVaNlPy~iss~il~~Ll~~g~~  243 (371)
                      .+.+|+|+++..-....++.+.|.++|.+
T Consensus       149 ~~sfD~I~~~~~~~~~~e~~rvLkpgG~l  177 (272)
T PRK11088        149 DQSLDAIIRIYAPCKAEELARVVKPGGIV  177 (272)
T ss_pred             CCceeEEEEecCCCCHHHHHhhccCCCEE
Confidence            35799999865323334555555555544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.88  E-value=1.3e-09  Score=101.44  Aligned_cols=75  Identities=27%  Similarity=0.393  Sum_probs=58.2

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--------CeEEEEcccccchhhhhhhhHHHhhc
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--------~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      |.+|||+|||+|.++..||+.|+.|+|||.++.|++.|++.....|        ++++.+.|+...              
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------------  155 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------------  155 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------------
Confidence            5789999999999999999999999999999999999999843332        244555665553              


Q ss_pred             cCCCeeEEEecCCCcccHHHHHHhc
Q 017450          214 SSSGFAKVVANIPFNISTDVIKQLL  238 (371)
Q Consensus       214 ~~~~~d~VVaNlPy~iss~il~~Ll  238 (371)
                       .+.||.||       ++++++|..
T Consensus       156 -~~~fDaVv-------csevleHV~  172 (282)
T KOG1270|consen  156 -TGKFDAVV-------CSEVLEHVK  172 (282)
T ss_pred             -ccccceee-------eHHHHHHHh
Confidence             25599999       455555543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.88  E-value=1.5e-08  Score=104.06  Aligned_cols=97  Identities=15%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             cccCcccCCCHHH--HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC-CCeEEE
Q 017450          117 KSLGQHYMLNSEI--NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVL  192 (371)
Q Consensus       117 k~lGQ~fl~~~~v--~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi  192 (371)
                      ..+|..|.+++.+  .+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++.... .+++++
T Consensus       240 ~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~  319 (475)
T PLN02336        240 RVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFE  319 (475)
T ss_pred             HHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEE
Confidence            3466677777665  466777777778889999999999999999886 779999999999999999887543 378999


Q ss_pred             EcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      .+|+.+.++.            .+.||+|+++-
T Consensus       320 ~~d~~~~~~~------------~~~fD~I~s~~  340 (475)
T PLN02336        320 VADCTKKTYP------------DNSFDVIYSRD  340 (475)
T ss_pred             EcCcccCCCC------------CCCEEEEEECC
Confidence            9999876532            35799999863

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.87  E-value=1.6e-08  Score=101.53  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~  197 (371)
                      +..|+......+..+.  ++++|||+|||+|.++..++..++ +|++||+|+.+++.|++|+..++    +++++++|+.
T Consensus       204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~  281 (396)
T PRK15128        204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_pred             cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence            4444444444444442  578999999999999988776654 89999999999999999987543    6899999997


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      ++...     +.   .....||+||.|+||...+
T Consensus       282 ~~l~~-----~~---~~~~~fDlVilDPP~f~~~  307 (396)
T PRK15128        282 KLLRT-----YR---DRGEKFDVIVMDPPKFVEN  307 (396)
T ss_pred             HHHHH-----HH---hcCCCCCEEEECCCCCCCC
Confidence            75211     10   1235799999999996543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.86  E-value=7.8e-09  Score=99.63  Aligned_cols=79  Identities=30%  Similarity=0.352  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..++++|||+|||+|.|+...+..|+ +|+|+|+|+..++.|++|...++   ++.+.  ...+.              .
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~--------------~  222 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL--------------V  222 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT--------------C
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc--------------c
Confidence            44778999999999999999999986 79999999999999999988664   34332  11111              2


Q ss_pred             CCCeeEEEecCCCcccHHH
Q 017450          215 SSGFAKVVANIPFNISTDV  233 (371)
Q Consensus       215 ~~~~d~VVaNlPy~iss~i  233 (371)
                      ..+||+|++|+-..+...+
T Consensus       223 ~~~~dlvvANI~~~vL~~l  241 (295)
T PF06325_consen  223 EGKFDLVVANILADVLLEL  241 (295)
T ss_dssp             CS-EEEEEEES-HHHHHHH
T ss_pred             cccCCEEEECCCHHHHHHH
Confidence            3679999999876554443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.85  E-value=1.1e-08  Score=105.05  Aligned_cols=95  Identities=19%  Similarity=0.253  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~  204 (371)
                      .+......+++.+...++++|||||||+|.++..+++.+.+|+|||+++.|++.+++.....++++++++|+.+..+.  
T Consensus        21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~--   98 (475)
T PLN02336         21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN--   98 (475)
T ss_pred             cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC--
Confidence            333445677777777778899999999999999999998899999999999998876544445899999999753321  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                              .....+|+|+++.+++.
T Consensus        99 --------~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         99 --------ISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             --------CCCCCEEEEehhhhHHh
Confidence                    12357999999987643

>PRK04266 fibrillarin; Provisional

Probab=98.84  E-value=2.3e-08  Score=93.10  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      .+.+.++++|||+|||+|..+..+++..  .+|+|+|+++.|++.+.++.....|+.++.+|+.+.....   +      
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~---~------  137 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA---H------  137 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh---h------
Confidence            5788899999999999999999999873  5899999999999988777665568999999987521100   0      


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+.+|+|+++.+
T Consensus       138 l~~~~D~i~~d~~  150 (226)
T PRK04266        138 VVEKVDVIYQDVA  150 (226)
T ss_pred             ccccCCEEEECCC
Confidence            1245899998765

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.83  E-value=1.4e-08  Score=92.09  Aligned_cols=77  Identities=23%  Similarity=0.283  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|+++....  +|++++++|+.++....         ...+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence            4569999999999999999987  568999999999999999887654  48999999998754210         1234


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      .+|.|+.|.|
T Consensus        87 ~~d~v~~~~p   96 (194)
T TIGR00091        87 SLSKVFLNFP   96 (194)
T ss_pred             ceeEEEEECC
Confidence            6999999976

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00740 methyltransferase, putative

Probab=98.83  E-value=2.6e-08  Score=93.06  Aligned_cols=74  Identities=20%  Similarity=0.303  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .++.+|||||||+|.++..+++.    +++++|+|+++.|++.|++++...   .+++++++|+.++++           
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence            46779999999999999999874    568999999999999999987653   268999999988753           


Q ss_pred             ccCCCeeEEEecCCC
Q 017450          213 KSSSGFAKVVANIPF  227 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy  227 (371)
                         +.+|.|+++...
T Consensus       121 ---~~~d~v~~~~~l  132 (239)
T TIGR00740       121 ---KNASMVILNFTL  132 (239)
T ss_pred             ---CCCCEEeeecch
Confidence               346788877653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK05785 hypothetical protein; Provisional

Probab=98.83  E-value=1.2e-08  Score=94.83  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      ++.+|||||||||.++..+++. +.+|+|+|++++|++.++++.      ..+++|+.++++.            .+.||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~------------d~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFR------------DKSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCC------------CCCEE
Confidence            4679999999999999999988 689999999999999998752      3578999888653            36799


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      .|+++..
T Consensus       113 ~v~~~~~  119 (226)
T PRK05785        113 VVMSSFA  119 (226)
T ss_pred             EEEecCh
Confidence            9998754

>PRK04148 hypothetical protein; Provisional

Probab=98.83  E-value=2.8e-08  Score=84.68  Aligned_cols=91  Identities=14%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      .+.+.|.+.+...++.+|||||||+|. ++..|++.|.+|+|+|+++..++.++++     .++++.+|..+-++.    
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~----   73 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE----   73 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH----
Confidence            355667776666667899999999996 8889998899999999999999988776     478999999987653    


Q ss_pred             hHHHhhccCCCeeEEEe-cCCCcccHHHH
Q 017450          207 SLFERRKSSSGFAKVVA-NIPFNISTDVI  234 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVa-NlPy~iss~il  234 (371)
                             ....+|.|.+ ++|-.+..+++
T Consensus        74 -------~y~~a~liysirpp~el~~~~~   95 (134)
T PRK04148         74 -------IYKNAKLIYSIRPPRDLQPFIL   95 (134)
T ss_pred             -------HHhcCCEEEEeCCCHHHHHHHH
Confidence                   1245788887 56655544444

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.83  E-value=1.7e-08  Score=98.10  Aligned_cols=98  Identities=21%  Similarity=0.291  Sum_probs=87.6

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEc-ccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC  199 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~g-D~~~~  199 (371)
                      --++|.++..+++++.+++|+.|||.-||||.+.....-.|++++|+|+|.+|++-++.|++.++  ...++.+ |+.++
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l  258 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL  258 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence            56889999999999999999999999999999999988889999999999999999999998774  6667776 99999


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~  232 (371)
                      ++.            ...+|.|+..+||..++.
T Consensus       259 pl~------------~~~vdaIatDPPYGrst~  279 (347)
T COG1041         259 PLR------------DNSVDAIATDPPYGRSTK  279 (347)
T ss_pred             CCC------------CCccceEEecCCCCcccc
Confidence            864            235999999999988763

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.83  E-value=1.4e-08  Score=93.02  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=73.2

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+++...+.+...+....+++|||||||+|++|.+|++.   +++|+++|+|++.++.|++++...+   +++++.||+
T Consensus        27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda  106 (205)
T PF01596_consen   27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA  106 (205)
T ss_dssp             GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred             CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence            4456666666666666667889999999999999999985   5799999999999999999998654   899999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .+.-..     +..+ ...+.||.|+-+-.
T Consensus       107 ~~~l~~-----l~~~-~~~~~fD~VFiDa~  130 (205)
T PF01596_consen  107 LEVLPE-----LAND-GEEGQFDFVFIDAD  130 (205)
T ss_dssp             HHHHHH-----HHHT-TTTTSEEEEEEEST
T ss_pred             HhhHHH-----HHhc-cCCCceeEEEEccc
Confidence            875321     1110 11357999997643

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02672 methionine S-methyltransferase

Probab=98.83  E-value=1.3e-08  Score=112.10  Aligned_cols=96  Identities=13%  Similarity=0.210  Sum_probs=71.1

Q ss_pred             CCCHHHHHHHHHHhcCC-----CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC----------
Q 017450          124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI----------  186 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~-----~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~----------  186 (371)
                      +++..-...+++.+...     ++.+|||+|||+|.++..++...  .+|+|+|+++++++.|++|...+          
T Consensus        96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            44444445555544322     24689999999999999999863  68999999999999999998642          


Q ss_pred             --------CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       187 --------~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                              .+++++++|+.+....           ....+|+||+|+||--.
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~-----------~~~~fDlIVSNPPYI~~  216 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRD-----------NNIELDRIVGCIPQILN  216 (1082)
T ss_pred             ccccccccccEEEEECchhhhccc-----------cCCceEEEEECCCcCCC
Confidence                    2689999998764210           11369999999998543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.83  E-value=2.2e-08  Score=90.23  Aligned_cols=83  Identities=22%  Similarity=0.328  Sum_probs=63.1

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+....-.++||+|||.|.+|..|+.++.+++++|+++..++.|+++....++|+++++|+.+..             +.
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-------------P~  104 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-------------PE  104 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-------------CC
Confidence            35545557999999999999999999988999999999999999999998889999999997753             34


Q ss_pred             CCeeEEE-ecCCCcccH
Q 017450          216 SGFAKVV-ANIPFNIST  231 (371)
Q Consensus       216 ~~~d~VV-aNlPy~iss  231 (371)
                      +.||.|| +-+-|+++.
T Consensus       105 ~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen  105 GRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             S-EEEEEEES-GGGSSS
T ss_pred             CCeeEEEEehHhHcCCC
Confidence            6788765 568888863

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.82  E-value=2e-08  Score=101.96  Aligned_cols=96  Identities=21%  Similarity=0.274  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~  200 (371)
                      .++......++..+.+.++++|||+|||+|..|..+++.+  .+|+|+|+++.+++.++++++..+ +++++++|+.+.+
T Consensus       227 ~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~  306 (427)
T PRK10901        227 SVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA  306 (427)
T ss_pred             EEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch
Confidence            3344455566677888899999999999999999999874  589999999999999999998765 5789999998653


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ..          .....||.|+.|+|+..
T Consensus       307 ~~----------~~~~~fD~Vl~D~Pcs~  325 (427)
T PRK10901        307 QW----------WDGQPFDRILLDAPCSA  325 (427)
T ss_pred             hh----------cccCCCCEEEECCCCCc
Confidence            10          12356999999999864

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.81  E-value=3.8e-08  Score=94.78  Aligned_cols=75  Identities=25%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|||+|||+|.++..++..+. +|+|+|+|+.+++.++++...++   ++.+..+|....              ..
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--------------~~  223 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--------------IE  223 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--------------cC
Confidence            4678999999999999999988764 89999999999999999987543   455666653221              23


Q ss_pred             CCeeEEEecCCCc
Q 017450          216 SGFAKVVANIPFN  228 (371)
Q Consensus       216 ~~~d~VVaNlPy~  228 (371)
                      ..||+|++|+...
T Consensus       224 ~~fDlVvan~~~~  236 (288)
T TIGR00406       224 GKADVIVANILAE  236 (288)
T ss_pred             CCceEEEEecCHH
Confidence            5799999997543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.1e-08  Score=93.43  Aligned_cols=162  Identities=22%  Similarity=0.308  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccch
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~  200 (371)
                      |.-+..|+..+++.+|++|||.|+|+|++|.+|+.. |  .+|+++|+.++.++.|++|++..+   ++++..+|+.+.-
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence            344677899999999999999999999999999974 3  599999999999999999998643   4889899998863


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCC--CcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeee
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF  278 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlP--y~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~  278 (371)
                      .             ...+|.||.++|  ++....+-..|.+++......-..   |-.++...+ .....|..+    ..
T Consensus       160 ~-------------~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v---eQv~kt~~~-l~~~g~~~i----e~  218 (256)
T COG2519         160 D-------------EEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV---EQVEKTVEA-LRERGFVDI----EA  218 (256)
T ss_pred             c-------------ccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHHH-HHhcCccch----hh
Confidence            2             247999999986  455555556666665432211111   222222210 000112222    22


Q ss_pred             eccceEEEEeCCCCcccCC-CC-ceEEEEEEEc
Q 017450          279 YSEPEYKFKVPRTNFFPQP-KV-DAAVVTFKLK  309 (371)
Q Consensus       279 ~~~~~~~~~Vp~~~F~P~P-kV-dS~vv~l~~~  309 (371)
                      +.-...-+++.+.+.+|.- .| .++-+.+.++
T Consensus       219 ~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~  251 (256)
T COG2519         219 VETLVRRWEVRKEATRPETRMVGHTGYIVFARK  251 (256)
T ss_pred             heeeeheeeecccccCcccccccceeEEEEEee
Confidence            2223344677888888863 22 4555666554

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.80  E-value=4e-08  Score=90.71  Aligned_cols=83  Identities=27%  Similarity=0.273  Sum_probs=64.1

Q ss_pred             HHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450          129 INDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       129 v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~  202 (371)
                      ..+.+...+.   ..++.+|||||||+|.++..+++.+.+|+++|+++.+++.|++++...   +++++..+|+..    
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----  123 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----  123 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----
Confidence            3444444443   346789999999999999999998889999999999999999987654   268888888422    


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCC
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                                 ..+.||+|+++-.
T Consensus       124 -----------~~~~fD~v~~~~~  136 (230)
T PRK07580        124 -----------LLGRFDTVVCLDV  136 (230)
T ss_pred             -----------ccCCcCEEEEcch
Confidence                       1256899987644

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.79  E-value=2.9e-08  Score=96.71  Aligned_cols=83  Identities=25%  Similarity=0.179  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-------CCeEEEEcccc
Q 017450          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFV  197 (371)
Q Consensus       128 ~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-------~~v~vi~gD~~  197 (371)
                      .+++.++..+..   .++.+|||||||+|.++..+++.|.+|+|+|+++.|++.++++....       .++++..+|+.
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            455666666653   25789999999999999999999999999999999999999987642       25677777765


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      ++               .+.||.|+++-
T Consensus       208 ~l---------------~~~fD~Vv~~~  220 (315)
T PLN02585        208 SL---------------SGKYDTVTCLD  220 (315)
T ss_pred             hc---------------CCCcCEEEEcC
Confidence            43               25689888753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.77  E-value=6e-08  Score=87.79  Aligned_cols=81  Identities=14%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      +++.+...++.++||+|||.|.-+.+||++|..|+|+|+++..++.+++.....+ .++....|+.+..+          
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~----------   91 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF----------   91 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----------
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc----------
Confidence            4455566677899999999999999999999999999999999999887765444 68888999887754          


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                         +..+|.|++...
T Consensus        92 ---~~~yD~I~st~v  103 (192)
T PF03848_consen   92 ---PEEYDFIVSTVV  103 (192)
T ss_dssp             ---TTTEEEEEEESS
T ss_pred             ---cCCcCEEEEEEE
Confidence               256899987533

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.77  E-value=7e-08  Score=90.74  Aligned_cols=110  Identities=24%  Similarity=0.314  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~  198 (371)
                      +=+.-+..|+..+++.+|++|||.|+|+|.+|..|+..   ..+|++.|+.++.++.|+++++..+   ++++.++|+.+
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE  103 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence            44556778999999999999999999999999999985   3599999999999999999998753   89999999976


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHh-ccCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQL-LPMGDI  243 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~L-l~~g~~  243 (371)
                      -.+.+         .....+|.|+-++|-  .....+...| .++|.+
T Consensus       104 ~g~~~---------~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i  142 (247)
T PF08704_consen  104 EGFDE---------ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRI  142 (247)
T ss_dssp             G--ST---------T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEE
T ss_pred             ccccc---------cccCcccEEEEeCCCHHHHHHHHHHHHhcCCceE
Confidence            43321         012579999999874  4445555566 455543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00452 methyltransferase, putative

Probab=98.76  E-value=5.8e-08  Score=94.53  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=72.3

Q ss_pred             CcccccCcccCCCHHHHHHHH-----HHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHH---Hhc
Q 017450          114 FPRKSLGQHYMLNSEINDQLA-----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFA  184 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~-----~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~---~~~  184 (371)
                      +++-.+.| +.++.++...+.     ..+...++++|||||||+|+++..++..+. .|+|||.++.|+..++.   ...
T Consensus        90 ~~~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~  168 (314)
T TIGR00452        90 KGPFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD  168 (314)
T ss_pred             CCCccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc
Confidence            45555667 777888765544     344566789999999999999999998875 69999999999875432   222


Q ss_pred             cCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       185 ~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      ..+++.+..+|+.+++.             ...||.|+++-
T Consensus       169 ~~~~v~~~~~~ie~lp~-------------~~~FD~V~s~g  196 (314)
T TIGR00452       169 NDKRAILEPLGIEQLHE-------------LYAFDTVFSMG  196 (314)
T ss_pred             cCCCeEEEECCHHHCCC-------------CCCcCEEEEcc
Confidence            23478888888877642             24699999763

Known examples to date are restricted to the proteobacteria.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.76  E-value=5.6e-08  Score=97.30  Aligned_cols=82  Identities=22%  Similarity=0.333  Sum_probs=67.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ..+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++++++.++++.... ++++..+|+.++        
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l--------  225 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL--------  225 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc--------
Confidence            3556777888889999999999999999999986 789999999999999999988532 577888887553        


Q ss_pred             HHHhhccCCCeeEEEecCC
Q 017450          208 LFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlP  226 (371)
                             .+.||.|+++..
T Consensus       226 -------~~~fD~Ivs~~~  237 (383)
T PRK11705        226 -------NGQFDRIVSVGM  237 (383)
T ss_pred             -------CCCCCEEEEeCc
Confidence                   256999998643

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.8e-08  Score=100.60  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      +.++....+.++..+++++||.-||.|.+|..||+...+|+|+|+++++++.|++|.+.++  |++++.+|+.++.... 
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~-  357 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW-  357 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc-
Confidence            4445555566677788999999999999999999999999999999999999999998765  8999999999875431 


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcccH-HHHHHhccCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGD  242 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~iss-~il~~Ll~~g~  242 (371)
                              .....+|.||-+||..-.. +++..+...+.
T Consensus       358 --------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p  388 (432)
T COG2265         358 --------WEGYKPDVVVVDPPRAGADREVLKQLAKLKP  388 (432)
T ss_pred             --------cccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence                    1235689999999997665 77777665543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.75  E-value=2.9e-08  Score=101.21  Aligned_cols=92  Identities=22%  Similarity=0.326  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccch
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~  200 (371)
                      .......+...+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...+  +++++++|+.++.
T Consensus       235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~  314 (444)
T PRK14902        235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH  314 (444)
T ss_pred             EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence            3344455666777888999999999999999999985   3689999999999999999987654  6899999998753


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ..           ....||.|+.|+|+.
T Consensus       315 ~~-----------~~~~fD~Vl~D~Pcs  331 (444)
T PRK14902        315 EK-----------FAEKFDKILVDAPCS  331 (444)
T ss_pred             ch-----------hcccCCEEEEcCCCC
Confidence            11           125699999999975

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.75  E-value=6.2e-08  Score=92.20  Aligned_cols=80  Identities=16%  Similarity=0.304  Sum_probs=64.5

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHh
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      +.+.++++|||||||+|..+..++.. +  .+|+++|+++.+++.|+++....  ++++++.+|+.++++.         
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~---------  143 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA---------  143 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCC---------
Confidence            45668899999999999988877764 3  47999999999999999987654  4889999999876542         


Q ss_pred             hccCCCeeEEEecCCCc
Q 017450          212 RKSSSGFAKVVANIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~  228 (371)
                         .+.+|+|++|.-++
T Consensus       144 ---~~~fD~Vi~~~v~~  157 (272)
T PRK11873        144 ---DNSVDVIISNCVIN  157 (272)
T ss_pred             ---CCceeEEEEcCccc
Confidence               35799999986543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.74  E-value=4.2e-08  Score=93.36  Aligned_cols=86  Identities=13%  Similarity=0.103  Sum_probs=70.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~  206 (371)
                      .....+.+.++++|||+|||+|..|..+++.   ...|+|+|+++.+++.++++++..+  +++++++|+..++.     
T Consensus        62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-----  136 (264)
T TIGR00446        62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA-----  136 (264)
T ss_pred             HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-----
Confidence            3345667888999999999999999999885   3589999999999999999997654  78999999876532     


Q ss_pred             hHHHhhccCCCeeEEEecCCCcc
Q 017450          207 SLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                             ..+.||.|+.|+|..-
T Consensus       137 -------~~~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446       137 -------AVPKFDAILLDAPCSG  152 (264)
T ss_pred             -------hccCCCEEEEcCCCCC
Confidence                   1245999999999763

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.74  E-value=6.3e-08  Score=96.34  Aligned_cols=87  Identities=16%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhH
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      +...+....+..+||||||+|..+..+|..  ...++|||+++.+++.+.++....  +|+.++++|+..+...      
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~------  187 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL------  187 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh------
Confidence            444445556779999999999999999987  468999999999999998887654  4999999999764211      


Q ss_pred             HHhhccCCCeeEEEecCCCcc
Q 017450          209 FERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy~i  229 (371)
                          ...+.+|.|+.|.|.-+
T Consensus       188 ----~~~~s~D~I~lnFPdPW  204 (390)
T PRK14121        188 ----LPSNSVEKIFVHFPVPW  204 (390)
T ss_pred             ----CCCCceeEEEEeCCCCc
Confidence                13467999999987543

>PRK08317 hypothetical protein; Provisional

Probab=98.74  E-value=1.1e-07  Score=87.57  Aligned_cols=87  Identities=24%  Similarity=0.329  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~  204 (371)
                      ..+.+...+.+.++++|||+|||+|.++..+++.   +.+++++|+++.+++.++++... ..+++++.+|+.+.++.  
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--   84 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP--   84 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC--
Confidence            4456777788888999999999999999999986   35899999999999999988432 34789999998876532  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                .+.+|.|+++..+
T Consensus        85 ----------~~~~D~v~~~~~~   97 (241)
T PRK08317         85 ----------DGSFDAVRSDRVL   97 (241)
T ss_pred             ----------CCCceEEEEechh
Confidence                      3579999886544

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.74  E-value=5.7e-08  Score=96.54  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHH----hcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450          124 MLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~----l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~  197 (371)
                      -+++.+.+.+++.    +... +.+|||++||+|.++..++....+|+|||+++.+++.|++|...++  +++++.+|+.
T Consensus       186 Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~  264 (362)
T PRK05031        186 QPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE  264 (362)
T ss_pred             ccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            3455555555544    3322 3579999999999999999887899999999999999999986554  8999999997


Q ss_pred             cchhhhhhhhH-HHhhc----cCCCeeEEEecCCCcc-cHHHHHHhcc
Q 017450          198 KCHIRSHMLSL-FERRK----SSSGFAKVVANIPFNI-STDVIKQLLP  239 (371)
Q Consensus       198 ~~~~~~~~~~l-~~~~~----~~~~~d~VVaNlPy~i-ss~il~~Ll~  239 (371)
                      ++- ....... .+...    ....+|+||.+||+.- ...++..|..
T Consensus       265 ~~l-~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~  311 (362)
T PRK05031        265 EFT-QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA  311 (362)
T ss_pred             HHH-HHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            752 1100000 00000    0124899999999964 3456666654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.74  E-value=3.8e-08  Score=90.75  Aligned_cols=87  Identities=26%  Similarity=0.382  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh
Q 017450          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (371)
Q Consensus       128 ~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~  202 (371)
                      .+...+++.+..   ..+.+|||||||+|.++..+++.+  .+++++|+++.++..++++..  ++++++.+|+.+.++ 
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~-   94 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPL-   94 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCC-
Confidence            344445444442   345799999999999999999875  478999999999999998875  378899999987653 


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                                 ..+.+|+|+++...+
T Consensus        95 -----------~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        95 -----------EDSSFDLIVSNLALQ  109 (240)
T ss_pred             -----------CCCceeEEEEhhhhh
Confidence                       235799999986654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.74  E-value=7e-08  Score=86.97  Aligned_cols=108  Identities=19%  Similarity=0.385  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450          126 NSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (371)
Q Consensus       126 ~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~  199 (371)
                      ...+.+.+.+.+..  -.+.++||+-||+|.++...+.+|+ +|+.||.|+..+..+++|++..+   +++++.+|+...
T Consensus        25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~  104 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF  104 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred             cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence            34455555655554  3788999999999999999999985 89999999999999999988654   589999998765


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCccc---HHHHHHhccCC
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMG  241 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is---s~il~~Ll~~g  241 (371)
                      -...     .   .....||+|+.+|||...   .+++..+...+
T Consensus       105 l~~~-----~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~  141 (183)
T PF03602_consen  105 LLKL-----A---KKGEKFDIIFLDPPYAKGLYYEELLELLAENN  141 (183)
T ss_dssp             HHHH-----H---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTT
T ss_pred             HHhh-----c---ccCCCceEEEECCCcccchHHHHHHHHHHHCC
Confidence            3211     0   134679999999999765   34555555443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02476 O-methyltransferase

Probab=98.74  E-value=5.9e-08  Score=92.66  Aligned_cols=98  Identities=11%  Similarity=0.169  Sum_probs=79.1

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+++.....+...+...++++|||||+|+|++|.+++..   +.+|+++|.|++.++.|+++++..+   +++++.||+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            5778888888888888888999999999999999999974   4589999999999999999998664   799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .+.-..     +..+ ...+.||.|+-+.+
T Consensus       180 ~e~L~~-----l~~~-~~~~~FD~VFIDa~  203 (278)
T PLN02476        180 AESLKS-----MIQN-GEGSSYDFAFVDAD  203 (278)
T ss_pred             HHHHHH-----HHhc-ccCCCCCEEEECCC
Confidence            875211     1100 01357999997765

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.73  E-value=5.8e-08  Score=96.17  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      ..+++.+.+.+...+ ++|||+|||+|.++..+++...+|+|||+++++++.|++|...++  +++++.+|+.++.....
T Consensus       184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  262 (353)
T TIGR02143       184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMN  262 (353)
T ss_pred             HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHh
Confidence            344455555554333 479999999999999999887899999999999999999987654  79999999977532100


Q ss_pred             hh-hH--HHhhc-cCCCeeEEEecCCCcc-cHHHHHHhcc
Q 017450          205 ML-SL--FERRK-SSSGFAKVVANIPFNI-STDVIKQLLP  239 (371)
Q Consensus       205 ~~-~l--~~~~~-~~~~~d~VVaNlPy~i-ss~il~~Ll~  239 (371)
                      .. .+  ..... ....+|+|+.+||..- ...++..+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~  302 (353)
T TIGR02143       263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA  302 (353)
T ss_pred             hccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            00 00  00000 0113799999999865 3455566554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=6.9e-08  Score=90.50  Aligned_cols=104  Identities=21%  Similarity=0.307  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       127 ~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      .++++.+++.+.   ...+..+||+|||+|..+..++..  .+.|+|||.++.++..|.+|...+   +.+.+++-+...
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            355566665553   235668999999999999999875  468999999999999999998754   578888655433


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL  238 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll  238 (371)
                      --+..+.       ...++.|.+|+|+||--..+ ..++.
T Consensus       211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD-~~~l~  242 (328)
T KOG2904|consen  211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD-NRQLK  242 (328)
T ss_pred             ccccccc-------cccCceeEEecCCCcccccc-hhhcC
Confidence            2111110       12378999999999866655 44443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.71  E-value=4.9e-08  Score=104.90  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=73.0

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~  197 (371)
                      +..|+...+..+..+.  ++++|||+|||+|.++..++..|+ +|++||+|+.+++.+++|+..++    +++++++|+.
T Consensus       522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence            3444444444444332  578999999999999999999876 69999999999999999997542    6899999997


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ++...           ....||+||.|+||...
T Consensus       600 ~~l~~-----------~~~~fDlIilDPP~f~~  621 (702)
T PRK11783        600 AWLKE-----------AREQFDLIFIDPPTFSN  621 (702)
T ss_pred             HHHHH-----------cCCCcCEEEECCCCCCC
Confidence            74211           13579999999999764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.70  E-value=9.5e-08  Score=93.89  Aligned_cols=88  Identities=15%  Similarity=0.249  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450          127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       127 ~~v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~  203 (371)
                      ..+...+++.+.. .++.+|||||||+|.++..+++.  +.+|+++|+++.|++.++++.. ..+++++.+|+.++++. 
T Consensus        98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~-  175 (340)
T PLN02490         98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFP-  175 (340)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCC-
Confidence            4455556665554 35779999999999999998875  4689999999999999998864 34789999999887542 


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                 .+.||+|+++..+
T Consensus       176 -----------~~sFDvVIs~~~L  188 (340)
T PLN02490        176 -----------TDYADRYVSAGSI  188 (340)
T ss_pred             -----------CCceeEEEEcChh
Confidence                       3579999987554

>PRK06922 hypothetical protein; Provisional

Probab=98.70  E-value=8.5e-08  Score=100.40  Aligned_cols=82  Identities=11%  Similarity=0.290  Sum_probs=64.9

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      +...++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.|+++.... .+++++++|+.+++..          .
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------f  483 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------F  483 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------c
Confidence            34446889999999999999988875  569999999999999999886543 3688899999876410          1


Q ss_pred             cCCCeeEEEecCCCc
Q 017450          214 SSSGFAKVVANIPFN  228 (371)
Q Consensus       214 ~~~~~d~VVaNlPy~  228 (371)
                      .++.+|+|++|.+++
T Consensus       484 edeSFDvVVsn~vLH  498 (677)
T PRK06922        484 EKESVDTIVYSSILH  498 (677)
T ss_pred             CCCCEEEEEEchHHH
Confidence            246799999987654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.70  E-value=6.2e-08  Score=98.42  Aligned_cols=95  Identities=14%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~  197 (371)
                      |.++......+...+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...+  +++++++|+.
T Consensus       219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~  298 (431)
T PRK14903        219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE  298 (431)
T ss_pred             EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence            3334444555666778889999999999999999999986   4689999999999999999987654  6889999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +++..           ..+.||.|+.|.|+.
T Consensus       299 ~l~~~-----------~~~~fD~Vl~DaPCs  318 (431)
T PRK14903        299 RLTEY-----------VQDTFDRILVDAPCT  318 (431)
T ss_pred             hhhhh-----------hhccCCEEEECCCCC
Confidence            75411           125699999999984

>PRK06202 hypothetical protein; Provisional

Probab=98.68  E-value=9.3e-08  Score=88.91  Aligned_cols=78  Identities=23%  Similarity=0.213  Sum_probs=60.0

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHh
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ...++.+|||||||+|.++..|++.    |  .+|+|+|++++|++.|+++... .++++..+|+..++.          
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~----------  125 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA----------  125 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc----------
Confidence            3356789999999999999988753    3  4899999999999999988642 357777776655542          


Q ss_pred             hccCCCeeEEEecCCCc
Q 017450          212 RKSSSGFAKVVANIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~  228 (371)
                        ....+|+|++|..++
T Consensus       126 --~~~~fD~V~~~~~lh  140 (232)
T PRK06202        126 --EGERFDVVTSNHFLH  140 (232)
T ss_pred             --cCCCccEEEECCeee
Confidence              235799999987654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.68  E-value=8.4e-08  Score=97.89  Aligned_cols=89  Identities=10%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR  202 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~  202 (371)
                      ......+..+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...+  +++++.+|+.++.  
T Consensus       237 ~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--  314 (445)
T PRK14904        237 PTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--  314 (445)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence            34445556677788899999999999999998874   3589999999999999999987654  7899999998753  


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                                 ....||.|+.++|+.-
T Consensus       315 -----------~~~~fD~Vl~D~Pcsg  330 (445)
T PRK14904        315 -----------PEEQPDAILLDAPCTG  330 (445)
T ss_pred             -----------cCCCCCEEEEcCCCCC
Confidence                       1256999999999744

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.68  E-value=7e-08  Score=94.45  Aligned_cols=86  Identities=19%  Similarity=0.258  Sum_probs=64.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHH--hc-cCCCeEEEEcccccchhhhhhhh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FA-SIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~--~~-~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+...+....+++|||||||+|+++..++..+. .|+|||.++.++..++..  .. ...+++++.+|+.++++      
T Consensus       113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~------  186 (322)
T PRK15068        113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA------  186 (322)
T ss_pred             HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC------
Confidence            445566656789999999999999999999875 699999999998764432  22 23479999999987753      


Q ss_pred             HHHhhccCCCeeEEEec-CCCccc
Q 017450          208 LFERRKSSSGFAKVVAN-IPFNIS  230 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaN-lPy~is  230 (371)
                             ...||.|+++ .-|++.
T Consensus       187 -------~~~FD~V~s~~vl~H~~  203 (322)
T PRK15068        187 -------LKAFDTVFSMGVLYHRR  203 (322)
T ss_pred             -------cCCcCEEEECChhhccC
Confidence                   2569999975 334443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.65  E-value=2.2e-07  Score=85.77  Aligned_cols=87  Identities=22%  Similarity=0.321  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccc
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~  199 (371)
                      .......++..+...++.+|||||||+|.++..++..+   .+++++|+++.+++.+++++...   ++++++.+|+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            34556677777777778899999999999999999875   79999999999999999988652   4789999999876


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEec
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      +.            ..+.+|+|+.+
T Consensus       116 ~~------------~~~~~D~I~~~  128 (239)
T PRK00216        116 PF------------PDNSFDAVTIA  128 (239)
T ss_pred             CC------------CCCCccEEEEe
Confidence            43            23568988864

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.64  E-value=1.6e-07  Score=88.64  Aligned_cols=48  Identities=35%  Similarity=0.466  Sum_probs=42.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~  186 (371)
                      ..++++|||||||+|.++..++..+. +|+|+|+|+.+++.+++++..+
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~  165 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN  165 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence            34788999999999999998888776 5999999999999999998754

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.64  E-value=2.8e-07  Score=85.53  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhh
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~  203 (371)
                      .++..+..+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+ +++++.+|+.++... 
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-  110 (233)
T PRK05134         32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-  110 (233)
T ss_pred             hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-
Confidence            344445666666666678899999999999999999988899999999999999998876433 577777877665311 


Q ss_pred             hhhhHHHhhccCCCeeEEEecC
Q 017450          204 HMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                                ..+.+|+|+++.
T Consensus       111 ----------~~~~fD~Ii~~~  122 (233)
T PRK05134        111 ----------HPGQFDVVTCME  122 (233)
T ss_pred             ----------cCCCccEEEEhh
Confidence                      235799998753

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.64  E-value=9.6e-08  Score=87.16  Aligned_cols=104  Identities=19%  Similarity=0.310  Sum_probs=67.1

Q ss_pred             CCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhccCC--
Q 017450          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID--  187 (371)
Q Consensus       112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~~~--  187 (371)
                      +....-.+...|..+....++..-.-...++++|+|..||.|.++..+|.  .++.|+|+|+++..++.++++.+.+.  
T Consensus        72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~  151 (200)
T PF02475_consen   72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE  151 (200)
T ss_dssp             TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred             CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence            33333334444444444444433333356899999999999999999998  56789999999999999999987653  


Q ss_pred             -CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       188 -~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                       ++.++++|+.++..             ...+|.|++|+|..
T Consensus       152 ~~i~~~~~D~~~~~~-------------~~~~drvim~lp~~  180 (200)
T PF02475_consen  152 NRIEVINGDAREFLP-------------EGKFDRVIMNLPES  180 (200)
T ss_dssp             TTEEEEES-GGG----------------TT-EEEEEE--TSS
T ss_pred             CeEEEEcCCHHHhcC-------------ccccCEEEECChHH
Confidence             68999999988742             36799999999964

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.63  E-value=3.9e-07  Score=87.66  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHH--h--CCeEEEEeCCHHHHHHHHHHhcc-C---CCeEEEEcccccchhhhh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLN--A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~--~--~~~V~aIE~d~~~i~~a~~~~~~-~---~~v~vi~gD~~~~~~~~~  204 (371)
                      ++......++++|+|||||.|.+|..+..  .  +.+++++|+|+++++.|++.+.. .   ++++++.+|+.+...   
T Consensus       115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---  191 (296)
T PLN03075        115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---  191 (296)
T ss_pred             HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc---
Confidence            33334344789999999997766554443  2  45899999999999999999853 2   379999999988531   


Q ss_pred             hhhHHHhhccCCCeeEEEec
Q 017450          205 MLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaN  224 (371)
                               ..+.||+|+..
T Consensus       192 ---------~l~~FDlVF~~  202 (296)
T PLN03075        192 ---------SLKEYDVVFLA  202 (296)
T ss_pred             ---------ccCCcCEEEEe
Confidence                     12569999876

>PRK00811 spermidine synthase; Provisional

Probab=98.61  E-value=1.8e-07  Score=90.02  Aligned_cols=75  Identities=19%  Similarity=0.311  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHHH
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ..+++||+||||+|.++..+++. + .+|++||+|+.+++.+++.+..       .++++++.+|+.++-..        
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--------  146 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------  146 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--------
Confidence            35679999999999999999987 3 5899999999999999998752       35899999999875311        


Q ss_pred             hhccCCCeeEEEecC
Q 017450          211 RRKSSSGFAKVVANI  225 (371)
Q Consensus       211 ~~~~~~~~d~VVaNl  225 (371)
                         ..+.||+|++++
T Consensus       147 ---~~~~yDvIi~D~  158 (283)
T PRK00811        147 ---TENSFDVIIVDS  158 (283)
T ss_pred             ---CCCcccEEEECC
Confidence               236799999985

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.60  E-value=1.6e-07  Score=95.66  Aligned_cols=99  Identities=13%  Similarity=0.229  Sum_probs=76.8

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~  197 (371)
                      |.+.......++..+.+.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...+  +++++++|+.
T Consensus       234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~  313 (434)
T PRK14901        234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR  313 (434)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence            3344445556666788889999999999999999999986   2589999999999999999987664  7899999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++.....        ...+.||.|+.|.|.+-
T Consensus       314 ~~~~~~~--------~~~~~fD~Vl~DaPCSg  337 (434)
T PRK14901        314 NLLELKP--------QWRGYFDRILLDAPCSG  337 (434)
T ss_pred             hcccccc--------cccccCCEEEEeCCCCc
Confidence            7641100        01256999999999653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.59  E-value=4.5e-07  Score=82.80  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~  203 (371)
                      ......++..+...++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++....+++++.+|+.+.++  
T Consensus        25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  102 (223)
T TIGR01934        25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF--  102 (223)
T ss_pred             HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--
Confidence            3455666777766688999999999999999999874   38999999999999999987633478999999988653  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                                ..+.+|.|+++..
T Consensus       103 ----------~~~~~D~i~~~~~  115 (223)
T TIGR01934       103 ----------EDNSFDAVTIAFG  115 (223)
T ss_pred             ----------CCCcEEEEEEeee
Confidence                      2356999987643

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.59  E-value=2.6e-07  Score=85.29  Aligned_cols=69  Identities=17%  Similarity=0.115  Sum_probs=54.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--------------cCCCeEEEEccccc
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK  198 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--------------~~~~v~vi~gD~~~  198 (371)
                      .+..+...++.+|||+|||.|.-+.+||++|.+|+|||+++.+++.+.....              ...+++++.+|+.+
T Consensus        26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            3343433466799999999999999999999999999999999998644211              12368999999998


Q ss_pred             chh
Q 017450          199 CHI  201 (371)
Q Consensus       199 ~~~  201 (371)
                      ++.
T Consensus       106 ~~~  108 (213)
T TIGR03840       106 LTA  108 (213)
T ss_pred             CCc
Confidence            753

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK04457 spermidine synthase; Provisional

Probab=98.58  E-value=3.8e-07  Score=86.78  Aligned_cols=76  Identities=17%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      ..++++|||||||+|.++..+++.  +.+|++||+|+.+++.|++++..   .++++++.+|+.++-..           
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-----------  132 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-----------  132 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-----------
Confidence            345689999999999999999886  56899999999999999999863   25899999999775211           


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+.+|+|+.|.
T Consensus       133 ~~~~yD~I~~D~  144 (262)
T PRK04457        133 HRHSTDVILVDG  144 (262)
T ss_pred             CCCCCCEEEEeC
Confidence            235689998763

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.56  E-value=1.4e-07  Score=83.15  Aligned_cols=79  Identities=22%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      +.|+|+.||.|.-|..+|+...+|+|||+|+..++.|+.|.+-++   ++++++||+.++....         .....+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------~~~~~~D   71 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------KSNKIFD   71 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---------ccccccc
Confidence            479999999999999999999999999999999999999998775   8999999999863221         0111279


Q ss_pred             EEEecCCCccc
Q 017450          220 KVVANIPFNIS  230 (371)
Q Consensus       220 ~VVaNlPy~is  230 (371)
                      .|+.+||+.-.
T Consensus        72 ~vFlSPPWGGp   82 (163)
T PF09445_consen   72 VVFLSPPWGGP   82 (163)
T ss_dssp             EEEE---BSSG
T ss_pred             EEEECCCCCCc
Confidence            99999999654

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.56  E-value=2.6e-07  Score=83.57  Aligned_cols=78  Identities=24%  Similarity=0.302  Sum_probs=59.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc-chhhhhhhhHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHIRSHMLSLF  209 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~-~~~~~~~~~l~  209 (371)
                      .+.+.+.  ++++|||||||+|.++..+++. +..++|+|+++.+++.++++     +++++.+|+.+ ++.        
T Consensus         6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~--------   70 (194)
T TIGR02081         6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA--------   70 (194)
T ss_pred             HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc--------
Confidence            3444433  6779999999999999999875 56899999999999988653     57888999865 211        


Q ss_pred             HhhccCCCeeEEEecCCC
Q 017450          210 ERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy  227 (371)
                         .....+|.|++|.++
T Consensus        71 ---~~~~sfD~Vi~~~~l   85 (194)
T TIGR02081        71 ---FPDKSFDYVILSQTL   85 (194)
T ss_pred             ---cCCCCcCEEEEhhHh
Confidence               123579999988664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.55  E-value=2.5e-07  Score=87.13  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+.+.....+...+...+.++|||||+++|++|.+|+..   +.+|+++|.+++.++.|++++...+   +++++.||+
T Consensus        61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a  140 (247)
T PLN02589         61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA  140 (247)
T ss_pred             CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence            3456777777777777778899999999999999999974   5699999999999999999998654   899999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      .+.-..     +...-...+.||.|+-+
T Consensus       141 ~e~L~~-----l~~~~~~~~~fD~iFiD  163 (247)
T PLN02589        141 LPVLDQ-----MIEDGKYHGTFDFIFVD  163 (247)
T ss_pred             HHHHHH-----HHhccccCCcccEEEec
Confidence            885321     11000012579999854

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.55  E-value=4.9e-07  Score=83.14  Aligned_cols=76  Identities=24%  Similarity=0.338  Sum_probs=55.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ..++.+|||||||+|..+..+++..   .+|+|||+++ |        ...++++++++|+.+....+.   +.+. ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~---i~~~-~~~  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKA---LLER-VGD  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHH---HHHH-hCC
Confidence            3578899999999999999999873   5899999998 2        123479999999988642111   1010 124


Q ss_pred             CCeeEEEecC-CC
Q 017450          216 SGFAKVVANI-PF  227 (371)
Q Consensus       216 ~~~d~VVaNl-Py  227 (371)
                      +.+|+|++|+ |+
T Consensus       116 ~~~D~V~S~~~~~  128 (209)
T PRK11188        116 SKVQVVMSDMAPN  128 (209)
T ss_pred             CCCCEEecCCCCc
Confidence            6799999997 44

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=4.2e-07  Score=80.53  Aligned_cols=78  Identities=23%  Similarity=0.354  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ....+||||||+|..+..|++. +  ....+.|+++.+++..++....++ ++++++.|....-             ..+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-------------~~~  109 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-------------RNE  109 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-------------ccC
Confidence            3679999999999999999886 3  468899999999998888776554 7788888887642             236


Q ss_pred             CeeEEEecCCCcccH
Q 017450          217 GFAKVVANIPFNIST  231 (371)
Q Consensus       217 ~~d~VVaNlPy~iss  231 (371)
                      +.|+++-|+||-.++
T Consensus       110 ~VDvLvfNPPYVpt~  124 (209)
T KOG3191|consen  110 SVDVLVFNPPYVPTS  124 (209)
T ss_pred             CccEEEECCCcCcCC
Confidence            799999999997765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.54  E-value=3.4e-07  Score=98.42  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=77.8

Q ss_pred             cCCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh---------------------------------------
Q 017450          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA---------------------------------------  162 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~---------------------------------------  162 (371)
                      -.+.+.+++.|+..... .++..++|.+||+|.+.+..+..                                       
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            34678899999998887 66889999999999998776542                                       


Q ss_pred             -----CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          163 -----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       163 -----~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                           ..+++|+|+|+.+++.|+.|+...+   .+++.++|+.++....          ..+.+|.||+||||..
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYGE  315 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCcC
Confidence                 1269999999999999999998654   5899999998875321          1246899999999953

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.53  E-value=5.1e-07  Score=83.03  Aligned_cols=89  Identities=18%  Similarity=0.192  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccccc
Q 017450          125 LNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~  198 (371)
                      .++..+..+...+..    ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...+  ++++..+|+.+
T Consensus        25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~  104 (224)
T TIGR01983        25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVED  104 (224)
T ss_pred             hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence            344555666666552    347899999999999999999888899999999999999999876543  58888888877


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEec
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      ....           ..+.+|+|+++
T Consensus       105 ~~~~-----------~~~~~D~i~~~  119 (224)
T TIGR01983       105 LAEK-----------GAKSFDVVTCM  119 (224)
T ss_pred             hhcC-----------CCCCccEEEeh
Confidence            6431           12578998875

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.53  E-value=3.7e-07  Score=92.70  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEE--EEccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKV--LQEDFVK  198 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~v--i~gD~~~  198 (371)
                      .+.......++..+.+.++++|||+|||+|..|..+++.  +++|+|+|+++.+++.++++++..+ .+++  ..+|...
T Consensus       221 ~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~  300 (426)
T TIGR00563       221 TVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG  300 (426)
T ss_pred             EEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence            333445666777788889999999999999999999986  3699999999999999999997654 3333  6677654


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ....          .....||.|+.+.|+.-
T Consensus       301 ~~~~----------~~~~~fD~VllDaPcSg  321 (426)
T TIGR00563       301 PSQW----------AENEQFDRILLDAPCSA  321 (426)
T ss_pred             cccc----------ccccccCEEEEcCCCCC
Confidence            3210          02356999999999754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.53  E-value=3.6e-07  Score=90.09  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--------------------------------------
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--------------------------------------  164 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--------------------------------------  164 (371)
                      -.+.+.++..|+.+++..++..++|.=||+|.+.+..|..+.                                      
T Consensus       173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            456788999999999999999999999999999988877653                                      


Q ss_pred             ---eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          165 ---TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       165 ---~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                         .++|+|+|+++++.|+.|....+   -|++.++|+.++...            ...+++||+||||.
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------------~~~~gvvI~NPPYG  310 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------------LEEYGVVISNPPYG  310 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------------CCcCCEEEeCCCcc
Confidence               37799999999999999988764   689999999887421            15689999999996

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.52  E-value=6e-07  Score=83.10  Aligned_cols=68  Identities=21%  Similarity=0.136  Sum_probs=53.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--------------cCCCeEEEEccccc
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK  198 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--------------~~~~v~vi~gD~~~  198 (371)
                      .+..+...++.+|||+|||.|.-+.+||++|.+|+|||+++..++.+.....              ...++++.++|+.+
T Consensus        29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~  108 (218)
T PRK13255         29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA  108 (218)
T ss_pred             HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence            3333344466799999999999999999999999999999999997643211              12368899999998


Q ss_pred             ch
Q 017450          199 CH  200 (371)
Q Consensus       199 ~~  200 (371)
                      ++
T Consensus       109 l~  110 (218)
T PRK13255        109 LT  110 (218)
T ss_pred             CC
Confidence            75

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.52  E-value=2.6e-07  Score=91.48  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      ..+++.++++++..++ .|||+-||+|.+|..||..+.+|+|||+++.+++.|++|...++  |++++.+++.++...-.
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~  261 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA  261 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence            4445555566666555 89999999999999999999999999999999999999998664  89999988866432100


Q ss_pred             hh-hH--HHhh-ccCCCeeEEEecCCCcccHH
Q 017450          205 ML-SL--FERR-KSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       205 ~~-~l--~~~~-~~~~~~d~VVaNlPy~iss~  232 (371)
                      .. ++  ...+ .....+|.|+.+||.....+
T Consensus       262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~  293 (352)
T PF05958_consen  262 KAREFNRLKGIDLKSFKFDAVILDPPRAGLDE  293 (352)
T ss_dssp             CS-GGTTGGGS-GGCTTESEEEE---TT-SCH
T ss_pred             hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchH
Confidence            00 00  0000 01235899999999866554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.48  E-value=5.9e-07  Score=86.63  Aligned_cols=91  Identities=13%  Similarity=0.306  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~  203 (371)
                      |-+++.+++.+.+.++..+||.+||.|..|..+++..   .+|+|+|+|+.+++.+++++...++++++++|+.++... 
T Consensus         5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~-   83 (296)
T PRK00050          5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV-   83 (296)
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence            4567888888888889999999999999999999873   689999999999999999886545899999999987421 


Q ss_pred             hhhhHHHhhccCCCeeEEEecC
Q 017450          204 HMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                           ..  .....+|.|+.++
T Consensus        84 -----l~--~~~~~vDgIl~DL   98 (296)
T PRK00050         84 -----LA--EGLGKVDGILLDL   98 (296)
T ss_pred             -----HH--cCCCccCEEEECC
Confidence                 11  0112688888776

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.48  E-value=3.8e-07  Score=83.17  Aligned_cols=86  Identities=19%  Similarity=0.316  Sum_probs=66.7

Q ss_pred             cCCCHHHHHHHHHHhcCCC--CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc-c
Q 017450          123 YMLNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-C  199 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~--~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~-~  199 (371)
                      ..+..++..+-++++....  +.-|||||||+|..+..|.+.|..++|+|+++.|++.|.+..-.   -.++.+|+-+ +
T Consensus        30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Gl  106 (270)
T KOG1541|consen   30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGL  106 (270)
T ss_pred             eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCC
Confidence            4566788888888887765  67899999999999999999999999999999999999874211   2366666643 2


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEe
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      ++            .++.||.+|+
T Consensus       107 pf------------rpGtFDg~IS  118 (270)
T KOG1541|consen  107 PF------------RPGTFDGVIS  118 (270)
T ss_pred             CC------------CCCccceEEE
Confidence            22            4578998774

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.47  E-value=1.2e-06  Score=78.58  Aligned_cols=93  Identities=26%  Similarity=0.436  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          127 SEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       127 ~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      ..+.+.+.+.+..  ..|.++||+-+|+|.++...+.+|+ +++.||.|...+..+++|.+..   ++.+++.+|+...-
T Consensus        27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L  106 (187)
T COG0742          27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL  106 (187)
T ss_pred             hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence            3455666666654  5788999999999999999999975 8999999999999999998754   37899999998431


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                       ...        ...+.||+|+.+|||+
T Consensus       107 -~~~--------~~~~~FDlVflDPPy~  125 (187)
T COG0742         107 -KQL--------GTREPFDLVFLDPPYA  125 (187)
T ss_pred             -Hhc--------CCCCcccEEEeCCCCc
Confidence             110        1223599999999997

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.46  E-value=5.2e-07  Score=83.13  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ++|||||||+|.++..+++.  +.+|+|+|+++.+++.+++++...   ++++++.+|+.+.++             .+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------------~~~   67 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------------PDT   67 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------------CCC
Confidence            47999999999999999986  468999999999999999988653   378999999866532             246


Q ss_pred             eeEEEec
Q 017450          218 FAKVVAN  224 (371)
Q Consensus       218 ~d~VVaN  224 (371)
                      ||+|+++
T Consensus        68 fD~I~~~   74 (224)
T smart00828       68 YDLVFGF   74 (224)
T ss_pred             CCEeehH
Confidence            8999864

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.46  E-value=1.9e-07  Score=85.79  Aligned_cols=117  Identities=23%  Similarity=0.282  Sum_probs=86.4

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhhhhhH
Q 017450          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      ++...++.|++|||...|.|+.++..+++|+ +|++||.|+..++.|+-|--..    .+++++.||+.++-..      
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~------  200 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD------  200 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc------
Confidence            3455667899999999999999999999998 9999999999999988763211    2789999999875321      


Q ss_pred             HHhhccCCCeeEEEecCCC-cccHH---------HHHHhccCCCchh--------HHHHHhhhhHHhhhc
Q 017450          209 FERRKSSSGFAKVVANIPF-NISTD---------VIKQLLPMGDIFS--------EVVLLLQEETALRLV  260 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy-~iss~---------il~~Ll~~g~~~~--------~~~lmvQke~a~rl~  260 (371)
                          ..+..||.|+.++|- +.+.+         +.+-|.++|.+|.        .--.-+|+++++||-
T Consensus       201 ----~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr  266 (287)
T COG2521         201 ----FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR  266 (287)
T ss_pred             ----CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence                245679999999994 55443         3344455665542        223456888888886

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.43  E-value=1.1e-06  Score=79.24  Aligned_cols=76  Identities=17%  Similarity=0.362  Sum_probs=54.4

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      ..+.++++|||||||+|.++..++...   .+|+++|+++.+         ..++++++++|+.+.+..+.....    .
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~   94 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----V   94 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----h
Confidence            345688999999999999999998762   479999999865         124788999998765421111000    1


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+.+|+|++|.
T Consensus        95 ~~~~~D~V~~~~  106 (188)
T TIGR00438        95 GDDKVDVVMSDA  106 (188)
T ss_pred             CCCCccEEEcCC
Confidence            235699999874

>PRK01581 speE spermidine synthase; Validated

Probab=98.43  E-value=1.9e-06  Score=84.96  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHh--c-------cCCCeEEEEcccccchhhhhhhh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~--~-------~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ...+++||+||||+|..+..+++..  .+|++||+|+++++.|++..  .       ..++++++.+|+.++-..     
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-----  222 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-----  222 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-----
Confidence            3466799999999999999888864  68999999999999999731  1       235899999999875321     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                            ..+.||+|+.++|-
T Consensus       223 ------~~~~YDVIIvDl~D  236 (374)
T PRK01581        223 ------PSSLYDVIIIDFPD  236 (374)
T ss_pred             ------cCCCccEEEEcCCC
Confidence                  23579999999864

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1e-06  Score=79.85  Aligned_cols=111  Identities=18%  Similarity=0.293  Sum_probs=88.2

Q ss_pred             cccCCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC--------
Q 017450          121 QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI--------  186 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~--------  186 (371)
                      ..-+.-+.+-+.+++.+.  +++|-+.||+|+|+|+||..++..    |..++|||.-+++++.+++++...        
T Consensus        60 n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~  139 (237)
T KOG1661|consen   60 NLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS  139 (237)
T ss_pred             ceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence            445677899999999998  889999999999999999998864    345699999999999999987532        


Q ss_pred             ----CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE-ecCCCcccHHHHHHhccCCCc
Q 017450          187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV-ANIPFNISTDVIKQLLPMGDI  243 (371)
Q Consensus       187 ----~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV-aNlPy~iss~il~~Ll~~g~~  243 (371)
                          +++.++.||......            +..+||.|. +.-.-.+..+++.+|.++|.+
T Consensus       140 ~~~~~~l~ivvGDgr~g~~------------e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrl  189 (237)
T KOG1661|consen  140 KLKRGELSIVVGDGRKGYA------------EQAPYDAIHVGAAASELPQELLDQLKPGGRL  189 (237)
T ss_pred             hhccCceEEEeCCccccCC------------ccCCcceEEEccCccccHHHHHHhhccCCeE
Confidence                378899999988743            235688774 433335667888899888876

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.43  E-value=1.7e-06  Score=74.68  Aligned_cols=76  Identities=24%  Similarity=0.312  Sum_probs=54.1

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       131 ~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      +.+..... ..++.+|||||||+|.++..|++.+.+++++|+++.+++.        .++.....+......        
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~--------   74 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPF--------   74 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHC--------
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhc--------
Confidence            33444443 4678899999999999999999889999999999999988        123333333332221        


Q ss_pred             HhhccCCCeeEEEecCC
Q 017450          210 ERRKSSSGFAKVVANIP  226 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlP  226 (371)
                          ..+.+|.|+++--
T Consensus        75 ----~~~~fD~i~~~~~   87 (161)
T PF13489_consen   75 ----PDGSFDLIICNDV   87 (161)
T ss_dssp             ----HSSSEEEEEEESS
T ss_pred             ----cccchhhHhhHHH
Confidence                2468999998743

...

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.42  E-value=3e-08  Score=79.52  Aligned_cols=73  Identities=29%  Similarity=0.404  Sum_probs=46.6

Q ss_pred             EEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V  221 (371)
                      ||||||+|.++..+++.  ..+++++|+++.|++.+++++....  +...+..+..+....          .....||.|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V   70 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV   70 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence            79999999999999998  6799999999999998888887654  334444444333211          112479999


Q ss_pred             EecCCCc
Q 017450          222 VANIPFN  228 (371)
Q Consensus       222 VaNlPy~  228 (371)
                      +++-..+
T Consensus        71 ~~~~vl~   77 (99)
T PF08242_consen   71 VASNVLH   77 (99)
T ss_dssp             EEE-TTS
T ss_pred             hhhhhHh
Confidence            9865443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02366 spermidine synthase

Probab=98.42  E-value=1.5e-06  Score=84.60  Aligned_cols=77  Identities=13%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+++||+||||.|.++..+++..  .+|+.||+|+.+++.+++.+..      .++++++.+|+.++-..         
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~---------  160 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN---------  160 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---------
Confidence            467899999999999999999873  5899999999999999998753      25899999998765211         


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                       ...+.||+|+.+.+
T Consensus       161 -~~~~~yDvIi~D~~  174 (308)
T PLN02366        161 -APEGTYDAIIVDSS  174 (308)
T ss_pred             -ccCCCCCEEEEcCC
Confidence             11357999998764

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.41  E-value=1.3e-06  Score=68.08  Aligned_cols=75  Identities=27%  Similarity=0.428  Sum_probs=59.6

Q ss_pred             EEEEEcCcccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      +|+|+|||.|.++..++. .+.+++++|.++..+..+++....  ..+++++.+|+.+....           ..+.+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~   69 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-----------ADESFDV   69 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-----------cCCceEE
Confidence            489999999999999998 467999999999999988843322  24789999998876420           2357999


Q ss_pred             EEecCCCcc
Q 017450          221 VVANIPFNI  229 (371)
Q Consensus       221 VVaNlPy~i  229 (371)
                      |+.|.+++.
T Consensus        70 i~~~~~~~~   78 (107)
T cd02440          70 IISDPPLHH   78 (107)
T ss_pred             EEEccceee
Confidence            999998765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.40  E-value=2.5e-06  Score=82.71  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=59.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      +...+++.+...++.+|||||||+|.++..++++  +.+++++|. +.+++.++++....   ++++++.+|+.+.+
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~  212 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES  212 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence            4566777777788899999999999999999987  468999998 78999999887754   37899999998643

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK03612 spermidine synthase; Provisional

Probab=98.39  E-value=1.1e-06  Score=91.50  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHH--hc-------cCCCeEEEEcccccchhhhhhhhH
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~--~~-------~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      .++++|||||||+|..+..++++.  .+|++||+|+++++.++++  +.       +.++++++.+|+.+.-..      
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~------  369 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK------  369 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh------
Confidence            467899999999999999999874  5999999999999999984  22       125899999999874211      


Q ss_pred             HHhhccCCCeeEEEecCCCc
Q 017450          209 FERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy~  228 (371)
                           ..++||+|++|+|..
T Consensus       370 -----~~~~fDvIi~D~~~~  384 (521)
T PRK03612        370 -----LAEKFDVIIVDLPDP  384 (521)
T ss_pred             -----CCCCCCEEEEeCCCC
Confidence                 235799999998753

>TIGR00417 speE spermidine synthase

Probab=98.38  E-value=2e-06  Score=82.04  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+++|||||||+|.++..+++..  .+++++|+|+.+++.+++.+..      .++++++.+|+.+.-..         
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---------  141 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---------  141 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---------
Confidence            356699999999999999988864  5899999999999999998743      24788999998764211         


Q ss_pred             hccCCCeeEEEecCCC
Q 017450          212 RKSSSGFAKVVANIPF  227 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy  227 (371)
                        ....||+||.+.+.
T Consensus       142 --~~~~yDvIi~D~~~  155 (270)
T TIGR00417       142 --TENTFDVIIVDSTD  155 (270)
T ss_pred             --CCCCccEEEEeCCC
Confidence              23579999998764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.37  E-value=3.3e-06  Score=78.72  Aligned_cols=82  Identities=21%  Similarity=0.350  Sum_probs=66.6

Q ss_pred             ccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C------CeEEEEeCCHHHHHHHHHHhccC---
Q 017450          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASI---  186 (371)
Q Consensus       118 ~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~------~~V~aIE~d~~~i~~a~~~~~~~---  186 (371)
                      .+|+|-++    -+..+..+.+..+.++||++||||.+|..+.+.  .      .+|+.+|++++|+..++++....   
T Consensus        81 SlGiHRlW----Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~  156 (296)
T KOG1540|consen   81 SLGIHRLW----KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK  156 (296)
T ss_pred             hcchhHHH----HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence            45665443    345677788888999999999999999999885  2      58999999999999999987432   


Q ss_pred             --CCeEEEEcccccchhhh
Q 017450          187 --DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       187 --~~v~vi~gD~~~~~~~~  203 (371)
                        +.+.++.+|++++++++
T Consensus       157 ~~~~~~w~~~dAE~LpFdd  175 (296)
T KOG1540|consen  157 ASSRVEWVEGDAEDLPFDD  175 (296)
T ss_pred             cCCceEEEeCCcccCCCCC
Confidence              25899999999998753

>PTZ00146 fibrillarin; Provisional

Probab=98.36  E-value=2.5e-06  Score=81.86  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch-hhhhhhhHHHh
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-IRSHMLSLFER  211 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~-~~~~~~~l~~~  211 (371)
                      .+.+.++++|||+|||+|+.|..+++..   ..|+|||+++++.+.+.+......|+..+.+|+..-. +.         
T Consensus       127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~---------  197 (293)
T PTZ00146        127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR---------  197 (293)
T ss_pred             eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh---------
Confidence            3456789999999999999999999972   5899999999876555554433368999999986421 11         


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                       ...+.+|+|+++..
T Consensus       198 -~~~~~vDvV~~Dva  211 (293)
T PTZ00146        198 -MLVPMVDVIFADVA  211 (293)
T ss_pred             -cccCCCCEEEEeCC
Confidence             01246899998875

>TIGR03438 probable methyltransferase

Probab=98.34  E-value=4.1e-06  Score=81.24  Aligned_cols=68  Identities=25%  Similarity=0.372  Sum_probs=54.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhcc-CC--CeEEEEcccccc
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKC  199 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~-~~--~v~vi~gD~~~~  199 (371)
                      .+.|++.+.  ++.+|||+|||+|..|..|++.   +.+|++||++++|++.+++++.. .+  ++..+++|+.+.
T Consensus        54 ~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        54 ADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            344554443  5679999999999999999987   47899999999999999988754 23  456789999763

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.33  E-value=3.3e-06  Score=84.47  Aligned_cols=102  Identities=16%  Similarity=0.105  Sum_probs=75.2

Q ss_pred             ccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450          122 HYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~  196 (371)
                      |.-.+..+...+++.+... ++.+|||++||+|.++..++.. + .+|+++|+|+.+++.+++|++.++  +++++++|+
T Consensus        37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da  116 (382)
T PRK04338         37 RMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA  116 (382)
T ss_pred             cccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence            3344556666666665433 3468999999999999999876 3 389999999999999999987543  677899998


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHH
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~  236 (371)
                      .++..            ....||+|+.|+| ....+.+..
T Consensus       117 ~~~l~------------~~~~fD~V~lDP~-Gs~~~~l~~  143 (382)
T PRK04338        117 NALLH------------EERKFDVVDIDPF-GSPAPFLDS  143 (382)
T ss_pred             HHHHh------------hcCCCCEEEECCC-CCcHHHHHH
Confidence            66421            1246999999975 555566544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.28  E-value=1.8e-06  Score=84.58  Aligned_cols=95  Identities=18%  Similarity=0.279  Sum_probs=74.4

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      .|..+....++..-+-....|++|||.-+|.|.+|..+|..|.. |+|+|+|+..++.+++|+.-++   .+..++||+.
T Consensus       169 v~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~r  248 (341)
T COG2520         169 VYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR  248 (341)
T ss_pred             eEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHH
Confidence            34444444444333333446999999999999999999999875 9999999999999999998654   4889999999


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++...            .+.+|.|++|+|..
T Consensus       249 ev~~~------------~~~aDrIim~~p~~  267 (341)
T COG2520         249 EVAPE------------LGVADRIIMGLPKS  267 (341)
T ss_pred             Hhhhc------------cccCCEEEeCCCCc
Confidence            87532            26689999999973

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.25  E-value=4.1e-06  Score=79.76  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCcccH----HHHHHHHh-------CCeEEEEeCCHHHHHHHHHHhcc-----------------------
Q 017450          140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS-----------------------  185 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~----lt~~La~~-------~~~V~aIE~d~~~i~~a~~~~~~-----------------------  185 (371)
                      .++.+|||+|||+|.    ++..+++.       +.+|+|+|+|+.|++.|++..-.                       
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345699999999996    55555553       25899999999999999985310                       


Q ss_pred             ------CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       186 ------~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                            ..++++.++|+.+.++            ..+.+|+|++
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~------------~~~~fD~I~c  209 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESP------------PLGDFDLIFC  209 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCC------------ccCCCCEEEe
Confidence                  0257888888887543            1357999987

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.23  E-value=4.1e-06  Score=81.41  Aligned_cols=73  Identities=22%  Similarity=0.323  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      +..++.|||+|||+|.|+...|+.|+ +|+|||.+.-+ ..|.+.+..++   -++++.|.+.++.++            
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP------------  124 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP------------  124 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC------------
Confidence            45789999999999999999999986 79999987655 88888877654   589999999998542            


Q ss_pred             CCCeeEEEec
Q 017450          215 SSGFAKVVAN  224 (371)
Q Consensus       215 ~~~~d~VVaN  224 (371)
                      .++.|+||+-
T Consensus       125 ~eKVDiIvSE  134 (346)
T KOG1499|consen  125 VEKVDIIVSE  134 (346)
T ss_pred             ccceeEEeeh
Confidence            3678999974

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.22  E-value=1.7e-06  Score=77.14  Aligned_cols=61  Identities=28%  Similarity=0.366  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--cCCCeEEEEcccccchh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHI  201 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--~~~~v~vi~gD~~~~~~  201 (371)
                      ..+.+.|+|+|+|.|+...++.+.+|+|||.|+...+.|.+|+.  ...|++++.||+.+.++
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f   94 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF   94 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence            34799999999999999988888899999999999999999964  33499999999999876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.22  E-value=3.2e-07  Score=84.10  Aligned_cols=88  Identities=17%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      |..++.++..+...+-+++||+|||||-.+..|-....+++|||+|+.|++.|.++-- +  =++.++|+..+...    
T Consensus       111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~-Y--D~L~~Aea~~Fl~~----  183 (287)
T COG4976         111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL-Y--DTLYVAEAVLFLED----  183 (287)
T ss_pred             HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc-h--HHHHHHHHHHHhhh----
Confidence            5566777777777667899999999999999999998999999999999999987621 1  13445555443210    


Q ss_pred             hHHHhhccCCCeeEEEec--CCC
Q 017450          207 SLFERRKSSSGFAKVVAN--IPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaN--lPy  227 (371)
                            ....++|.|++.  +||
T Consensus       184 ------~~~er~DLi~AaDVl~Y  200 (287)
T COG4976         184 ------LTQERFDLIVAADVLPY  200 (287)
T ss_pred             ------ccCCcccchhhhhHHHh
Confidence                  134678988853  454

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.21  E-value=7.1e-06  Score=76.44  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=38.5

Q ss_pred             HHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHH
Q 017450          131 DQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGL  178 (371)
Q Consensus       131 ~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~  178 (371)
                      ..++....+ .++.+|||+|||+|.+|..+++.|+ +|+|||+++.|+..
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            344444443 3677999999999999999999964 89999999977765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK10742 putative methyltransferase; Provisional

Probab=98.20  E-value=7.3e-06  Score=76.76  Aligned_cols=88  Identities=17%  Similarity=0.226  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCCCC--EEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-----------CCeEEEEcccc
Q 017450          131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV  197 (371)
Q Consensus       131 ~~i~~~l~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-----------~~v~vi~gD~~  197 (371)
                      +.|+..++++++.  +|||.-+|+|..+..++..|++|++||.++.....+++++...           .+++++++|+.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence            4677888888888  9999999999999999999999999999999999998887652           35889999988


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++--.           ....||+|+.+|||-.
T Consensus       156 ~~L~~-----------~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        156 TALTD-----------ITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHhh-----------CCCCCcEEEECCCCCC
Confidence            76321           1246999999999954

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.19  E-value=6.8e-06  Score=76.12  Aligned_cols=85  Identities=19%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--------------CCCeEE
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV  191 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--------------~~~v~v  191 (371)
                      ++.+.+.+ ..+...++.+||..|||.|.-..+|+++|.+|+|+|+++..++.+.+....              .++|++
T Consensus        23 ~p~L~~~~-~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEYL-DSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHHH-HHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            34444443 335666778999999999999999999999999999999999998433210              136899


Q ss_pred             EEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (371)
Q Consensus       192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV  222 (371)
                      ++||+.+++...           .+.||.|+
T Consensus       102 ~~gDfF~l~~~~-----------~g~fD~iy  121 (218)
T PF05724_consen  102 YCGDFFELPPED-----------VGKFDLIY  121 (218)
T ss_dssp             EES-TTTGGGSC-----------HHSEEEEE
T ss_pred             EEcccccCChhh-----------cCCceEEE
Confidence            999999976431           24688887

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.18  E-value=1.4e-05  Score=74.24  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHh--------------ccCCCeE
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF--------------ASIDQLK  190 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~--------------~~~~~v~  190 (371)
                      .++.+.+.+-. +...++.+||.+|||.|.-..+|+++|.+|+|+|+++..++.+.+..              ....+++
T Consensus        28 pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         28 PNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            44555555433 44446689999999999999999999999999999999999876531              0123789


Q ss_pred             EEEcccccchh
Q 017450          191 VLQEDFVKCHI  201 (371)
Q Consensus       191 vi~gD~~~~~~  201 (371)
                      +++||+.+++.
T Consensus       107 ~~~gD~f~l~~  117 (226)
T PRK13256        107 IYVADIFNLPK  117 (226)
T ss_pred             EEEccCcCCCc
Confidence            99999999853

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.15  E-value=9.9e-06  Score=73.73  Aligned_cols=76  Identities=21%  Similarity=0.329  Sum_probs=58.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ...+||||||.|.++..+|..  ...++|||+....+..+.++...  .+|+.++++|+..+-..     +    ..++.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-----~----~~~~~   88 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-----L----FPPGS   88 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH-----H----STTTS
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh-----c----ccCCc
Confidence            348999999999999999986  57899999999999988887764  45999999999874211     1    23467


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      .+.|.-|.|
T Consensus        89 v~~i~i~FP   97 (195)
T PF02390_consen   89 VDRIYINFP   97 (195)
T ss_dssp             EEEEEEES-
T ss_pred             hheEEEeCC
Confidence            899998876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.14  E-value=1.5e-05  Score=81.38  Aligned_cols=70  Identities=27%  Similarity=0.509  Sum_probs=52.8

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC------CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~------~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      +..|+|||||+|.|....++.+      .+|+|||.++.++..+++....+   ++|+++++|+.++..           
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----------  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----------  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----------
Confidence            5789999999999987776654      48999999999888876653332   489999999999864           


Q ss_pred             ccCCCeeEEEec
Q 017450          213 KSSSGFAKVVAN  224 (371)
Q Consensus       213 ~~~~~~d~VVaN  224 (371)
                        +.+.|+||+-
T Consensus       256 --pekvDIIVSE  265 (448)
T PF05185_consen  256 --PEKVDIIVSE  265 (448)
T ss_dssp             --SS-EEEEEE-
T ss_pred             --CCceeEEEEe
Confidence              3579999974

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.14  E-value=4.7e-06  Score=76.05  Aligned_cols=110  Identities=15%  Similarity=0.222  Sum_probs=83.5

Q ss_pred             CcccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcc
Q 017450          120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQED  195 (371)
Q Consensus       120 GQ~fl~~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD  195 (371)
                      ||-..++..++..|+...... ..+.|+|.-||.|.-|...+..+..|++||+|+.-+..|+.|.+-+|   ++++++||
T Consensus        72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD  151 (263)
T KOG2730|consen   72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD  151 (263)
T ss_pred             ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence            454566666666666544322 56789999999999999999999999999999999999999998765   89999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHh
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL  237 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~L  237 (371)
                      ++++--.     +-   ......|.|+..+|+.-++-+...+
T Consensus       152 ~ld~~~~-----lq---~~K~~~~~vf~sppwggp~y~~~~~  185 (263)
T KOG2730|consen  152 FLDLASK-----LK---ADKIKYDCVFLSPPWGGPSYLRADV  185 (263)
T ss_pred             HHHHHHH-----Hh---hhhheeeeeecCCCCCCcchhhhhh
Confidence            9886321     10   1234578999999987766544333

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.13  E-value=1.2e-05  Score=71.51  Aligned_cols=102  Identities=21%  Similarity=0.282  Sum_probs=74.9

Q ss_pred             CC-cHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhc---C-CCCCEEEEEcCcccHHHHHHHHhCC--eEEEEe
Q 017450           98 DD-DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---V-QEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIE  170 (371)
Q Consensus        98 ~~-~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~---~-~~~~~VLEIG~G~G~lt~~La~~~~--~V~aIE  170 (371)
                      |+ .|..-++.+++++....-|||.  -....+++++.....   + ...++|||+|||.|.+...|++.+-  +++|||
T Consensus        21 WD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvD   98 (227)
T KOG1271|consen   21 WDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVD   98 (227)
T ss_pred             HHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccc
Confidence            44 5666677777777777778874  222345555555544   2 2445999999999999999999863  699999


Q ss_pred             CCHHHHHHHHHHhccCC--C-eEEEEcccccchh
Q 017450          171 KDQHMVGLVRERFASID--Q-LKVLQEDFVKCHI  201 (371)
Q Consensus       171 ~d~~~i~~a~~~~~~~~--~-v~vi~gD~~~~~~  201 (371)
                      .++..++.|+...+..+  + |++.+.|+.+-++
T Consensus        99 Ys~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~  132 (227)
T KOG1271|consen   99 YSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF  132 (227)
T ss_pred             cCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc
Confidence            99999999887766543  3 8999999987543

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.10  E-value=9.5e-06  Score=78.19  Aligned_cols=82  Identities=23%  Similarity=0.366  Sum_probs=65.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.|++.-....++.|||+|||+|.++...++.|+ +|+|||-+ +|.++|++..+.+   .+++++.|-++++.+    
T Consensus       166 ~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL----  240 (517)
T KOG1500|consen  166 QRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL----  240 (517)
T ss_pred             HHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC----
Confidence            34455544455789999999999999999999875 89999975 6889999888765   388999999999865    


Q ss_pred             hhHHHhhccCCCeeEEEecC
Q 017450          206 LSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNl  225 (371)
                               +++.|++|+.+
T Consensus       241 ---------PEk~DviISEP  251 (517)
T KOG1500|consen  241 ---------PEKVDVIISEP  251 (517)
T ss_pred             ---------chhccEEEecc
Confidence                     35688888764

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=1.9e-05  Score=74.20  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~  203 (371)
                      ++.|+..+.+.+|++|||-|+|+|.++.++++.-   .+++..|.++...+.|.+.+++.   +++++.+-|+....+..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            5778899999999999999999999999999873   59999999999999999999865   38999999998765531


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                ....+|.|+-++|-
T Consensus       174 ----------ks~~aDaVFLDlPa  187 (314)
T KOG2915|consen  174 ----------KSLKADAVFLDLPA  187 (314)
T ss_pred             ----------cccccceEEEcCCC
Confidence                      24568999999874

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.09  E-value=1.9e-05  Score=75.84  Aligned_cols=90  Identities=20%  Similarity=0.279  Sum_probs=60.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHH--HHhccCC-CeEEEEcccccchhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR--ERFASID-QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~--~~~~~~~-~v~vi~gD~~~~~~~~~~~  206 (371)
                      +++...+..-.|++|||||||.|+.+..|+..|+ .|+|||.+.......+  +++-... .+..+---+.+++      
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------  178 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------  178 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence            3455666566899999999999999999999986 6999999988766432  2332211 2223212223322      


Q ss_pred             hHHHhhccCCCeeEEEe-cCCCcccHHH
Q 017450          207 SLFERRKSSSGFAKVVA-NIPFNISTDV  233 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVa-NlPy~iss~i  233 (371)
                             ..+.||+|++ ..-||-.+|+
T Consensus       179 -------~~~~FDtVF~MGVLYHrr~Pl  199 (315)
T PF08003_consen  179 -------NLGAFDTVFSMGVLYHRRSPL  199 (315)
T ss_pred             -------ccCCcCEEEEeeehhccCCHH
Confidence                   1367998875 5788887765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.04  E-value=1.5e-05  Score=73.11  Aligned_cols=94  Identities=17%  Similarity=0.318  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhc-------cC----CCeEE
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA-------SI----DQLKV  191 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~-------~~----~~v~v  191 (371)
                      +.+.....|++.+++.+++..+|||||.|......+.. ++ +.+|||+.+...+.|+....       ..    +++++
T Consensus        26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l  105 (205)
T PF08123_consen   26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL  105 (205)
T ss_dssp             CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence            45677888899999999999999999999987766654 55 59999999999887765332       11    37889


Q ss_pred             EEcccccchhhhhhhhHHHhhccCCCeeEEEec-CCC
Q 017450          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF  227 (371)
Q Consensus       192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-lPy  227 (371)
                      .+||+++.+....   +.      ...|+|+.| .-|
T Consensus       106 ~~gdfl~~~~~~~---~~------s~AdvVf~Nn~~F  133 (205)
T PF08123_consen  106 IHGDFLDPDFVKD---IW------SDADVVFVNNTCF  133 (205)
T ss_dssp             ECS-TTTHHHHHH---HG------HC-SEEEE--TTT
T ss_pred             eccCccccHhHhh---hh------cCCCEEEEecccc
Confidence            9999998764321   11      235677665 554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.03  E-value=2.3e-05  Score=73.00  Aligned_cols=77  Identities=25%  Similarity=0.303  Sum_probs=62.7

Q ss_pred             CCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ...+||||||.|.++..+|+..  ..++|||+....+..|.+.+...+  |+.++++|+.++...      +   ...+.
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~------~---~~~~s  119 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY------L---IPDGS  119 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh------c---CCCCC
Confidence            3589999999999999999984  589999999999998888876543  999999999886421      1   23348


Q ss_pred             eeEEEecCCC
Q 017450          218 FAKVVANIPF  227 (371)
Q Consensus       218 ~d~VVaNlPy  227 (371)
                      .+.|.-|.|=
T Consensus       120 l~~I~i~FPD  129 (227)
T COG0220         120 LDKIYINFPD  129 (227)
T ss_pred             eeEEEEECCC
Confidence            8999999864

>PLN02823 spermine synthase

Probab=98.03  E-value=2.4e-05  Score=76.97  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .+++||.||+|.|.++..+++.  ..+|++||+|+.+++.+++.+..      .++++++.+|+.++-.           
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~-----------  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE-----------  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-----------
Confidence            5679999999999999998885  35899999999999999998853      3589999999987531           


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                      ...+.||+|+.++
T Consensus       172 ~~~~~yDvIi~D~  184 (336)
T PLN02823        172 KRDEKFDVIIGDL  184 (336)
T ss_pred             hCCCCccEEEecC
Confidence            1246799999885

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.99  E-value=2.2e-05  Score=78.45  Aligned_cols=93  Identities=17%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVK  198 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~~  198 (371)
                      +-..+....+...+   .|++||++-|=||.++...|..|+ +||+||.|...++.|++|++-++    .+.++++|+.+
T Consensus       203 lDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~  279 (393)
T COG1092         203 LDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK  279 (393)
T ss_pred             HHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence            33334444444443   389999999999999999999988 99999999999999999998654    57899999988


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +--..     .   .....||+||.+||=
T Consensus       280 ~l~~~-----~---~~g~~fDlIilDPPs  300 (393)
T COG1092         280 WLRKA-----E---RRGEKFDLIILDPPS  300 (393)
T ss_pred             HHHHH-----H---hcCCcccEEEECCcc
Confidence            63221     0   134589999999994

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.91  E-value=1.4e-05  Score=77.27  Aligned_cols=116  Identities=27%  Similarity=0.365  Sum_probs=94.2

Q ss_pred             HHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHH-------
Q 017450          105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG-------  177 (371)
Q Consensus       105 ~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~-------  177 (371)
                      .+++.++.++.+...|- .-.|.++.--+++.+.+.+|+.|+|.-.|||.+....+.-|+.|+|-|||-.++.       
T Consensus       173 R~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~  251 (421)
T KOG2671|consen  173 RELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDE  251 (421)
T ss_pred             HhHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCc
Confidence            34566677777777776 7788888888899999999999999999999999988888999999999998887       


Q ss_pred             HHHHHhccCC----CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450          178 LVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       178 ~a~~~~~~~~----~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~  232 (371)
                      -.+.|++.++    -+.++.+|+..-++..           ...+|.||+++||.+-..
T Consensus       252 si~aNFkQYg~~~~fldvl~~D~sn~~~rs-----------n~~fDaIvcDPPYGVRe~  299 (421)
T KOG2671|consen  252 SIKANFKQYGSSSQFLDVLTADFSNPPLRS-----------NLKFDAIVCDPPYGVREG  299 (421)
T ss_pred             chhHhHHHhCCcchhhheeeecccCcchhh-----------cceeeEEEeCCCcchhhh
Confidence            3456666554    3578889988876642           356999999999987643

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.90  E-value=7.2e-05  Score=66.71  Aligned_cols=81  Identities=21%  Similarity=0.300  Sum_probs=49.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-----CeEEEEcccccchhhhhhhhHHHh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-----~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ...+.+|||+|||+|..+..++..  +.+|+..|.++ .++.++.|++.++     ++++..-|.-+-..    .+.   
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~----~~~---  114 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELD----SDL---  114 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HH----HHH---
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccc----ccc---
Confidence            457889999999999999999998  67999999999 9999999987542     55555555433110    111   


Q ss_pred             hccCCCeeEEEe-cCCCc
Q 017450          212 RKSSSGFAKVVA-NIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVa-NlPy~  228 (371)
                       .....||+|++ ..-|.
T Consensus       115 -~~~~~~D~IlasDv~Y~  131 (173)
T PF10294_consen  115 -LEPHSFDVILASDVLYD  131 (173)
T ss_dssp             -HS-SSBSEEEEES--S-
T ss_pred             -cccccCCEEEEecccch
Confidence             13357898886 35553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.90  E-value=4.9e-05  Score=78.58  Aligned_cols=204  Identities=12%  Similarity=0.126  Sum_probs=122.2

Q ss_pred             CcHHHHHHHHHhcCC-CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CeEEEEeC
Q 017450           99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEK  171 (371)
Q Consensus        99 ~~~~~~~~~l~~~~~-~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~aIE~  171 (371)
                      +..+.+.+++.+..- ...+..|| |.++.++++.|+..+.+.+..+|+|.-||+|.+-...++.    .  ..++|.|+
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~  222 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEI  222 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeC
Confidence            355555555444433 34455588 9999999999999999888889999999999876555542    1  46899999


Q ss_pred             CHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH---HHHH-----HhccC
Q 017450          172 DQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIK-----QLLPM  240 (371)
Q Consensus       172 d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss---~il~-----~Ll~~  240 (371)
                      ++.....++-+.--.+   ++.+.++|-+.-+...--       .....+|.|++|+||+...   ..+.     +....
T Consensus       223 ~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~  295 (489)
T COG0286         223 NDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFY  295 (489)
T ss_pred             CHHHHHHHHHHHHHhCCCccccccccccccCCccccc-------CCccceeEEEeCCCCCcccccccccccccccccccc
Confidence            9999999998864322   357777877765543100       1236699999999997321   1110     01111


Q ss_pred             CCc-h-hHHHHHhhhhHHhhhc------cCCCCCCCCc--ceeeeeee---eccceEEEEeCCCCcccCCCCceEEEEEE
Q 017450          241 GDI-F-SEVVLLLQEETALRLV------EPSLRTSEYR--PINIFVNF---YSEPEYKFKVPRTNFFPQPKVDAAVVTFK  307 (371)
Q Consensus       241 g~~-~-~~~~lmvQke~a~rl~------~a~pg~k~Yg--~Lsv~~q~---~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~  307 (371)
                      +.. . ......+......++.      .--|.+..++  ....+.+.   -..++.+...|...|++. .+...++.|.
T Consensus       296 ~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t-~i~~~Il~l~  374 (489)
T COG0286         296 GVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNT-GIPTNILFLT  374 (489)
T ss_pred             CCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhccceEEeeeCChhhcccC-CCCeEEEEee
Confidence            111 0 1111111222222222      0112222222  11111111   223466688999999999 8888899887


Q ss_pred             EccC
Q 017450          308 LKQA  311 (371)
Q Consensus       308 ~~~~  311 (371)
                      +.+.
T Consensus       375 k~k~  378 (489)
T COG0286         375 KNKP  378 (489)
T ss_pred             cCCC
Confidence            6543

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=2.9e-05  Score=78.83  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      +-+...+-++++...++.+||+-||||.++..+++...+|+|||+++..++.|+.+...++  |.+++.|.++++-..  
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s--  446 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS--  446 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccch--
Confidence            3344555667788888999999999999999999999999999999999999999988765  999999977765321  


Q ss_pred             hhhHHHhhccCCCee-EEEecCCCcccHH-HHHHhcc
Q 017450          205 MLSLFERRKSSSGFA-KVVANIPFNISTD-VIKQLLP  239 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d-~VVaNlPy~iss~-il~~Ll~  239 (371)
                         ++.  ...+.-+ ++|.++|..-... ++..|..
T Consensus       447 ---l~~--~~~~~~~~v~iiDPpR~Glh~~~ik~l~~  478 (534)
T KOG2187|consen  447 ---LLT--PCCDSETLVAIIDPPRKGLHMKVIKALRA  478 (534)
T ss_pred             ---hcc--cCCCCCceEEEECCCcccccHHHHHHHHh
Confidence               110  0111233 7788999754443 3344443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.87  E-value=9.2e-05  Score=71.42  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhcCCC-----CCEEEEEcCcccHHHHHHH-H-hCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEccc
Q 017450          128 EINDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLL-N-AGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDF  196 (371)
Q Consensus       128 ~v~~~i~~~l~~~~-----~~~VLEIG~G~G~lt~~La-~-~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~  196 (371)
                      +.+..|..++....     .-++||||||.-..=-.|. . .+.+++|.|+|+..++.|++++..++    +|+++...-
T Consensus        84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~  163 (299)
T PF05971_consen   84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN  163 (299)
T ss_dssp             HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred             HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence            44556666665432     3489999999775433333 2 38899999999999999999998762    688876532


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHH
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~i  233 (371)
                      ...-+..    +.   ...+.+|...+|+||+-+.+-
T Consensus       164 ~~~i~~~----i~---~~~e~~dftmCNPPFy~s~~e  193 (299)
T PF05971_consen  164 PDNIFDG----II---QPNERFDFTMCNPPFYSSQEE  193 (299)
T ss_dssp             T-SSTTT----ST---T--S-EEEEEE-----SS---
T ss_pred             ccccchh----hh---cccceeeEEecCCccccChhh
Confidence            2111111    11   123579999999999887643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=3.4e-05  Score=69.97  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             CEEEEEcCcccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHhccC--CCeE-EEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~-vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ..|||+|||||..-...-- .+.+||++|.++.|-++|.+.+++.  .++. ++.+|..+++.           ...+++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-----------l~d~s~  146 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-----------LADGSY  146 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-----------cccCCe
Confidence            3589999999986555443 4789999999999999999888754  3676 89999998862           134789


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |.||.-+-
T Consensus       147 DtVV~Tlv  154 (252)
T KOG4300|consen  147 DTVVCTLV  154 (252)
T ss_pred             eeEEEEEE
Confidence            99997653

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.83  E-value=8.5e-05  Score=63.88  Aligned_cols=46  Identities=24%  Similarity=0.425  Sum_probs=40.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHH-----h-CCeEEEEeCCHHHHHHHHHHhcc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~-----~-~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      .+...|+|+|||.|+|+..|+.     . +.+|++||.++..++.+.++...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~   75 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK   75 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence            5678999999999999999998     3 67999999999999988877653

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.80  E-value=0.00013  Score=72.79  Aligned_cols=81  Identities=12%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CEEEEEcCcccHHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      -+|||..||+|..++.++..  | .+|+++|+|+..++.+++|.+.++  +++++++|+..+...           ....
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-----------~~~~  114 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-----------RNRK  114 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-----------hCCC
Confidence            48999999999999999987  4 489999999999999999997654  688999999876321           1246


Q ss_pred             eeEEEecCCCcccHHHHH
Q 017450          218 FAKVVANIPFNISTDVIK  235 (371)
Q Consensus       218 ~d~VVaNlPy~iss~il~  235 (371)
                      ||+|+.++ |.-..+.+.
T Consensus       115 fDvIdlDP-fGs~~~fld  131 (374)
T TIGR00308       115 FHVIDIDP-FGTPAPFVD  131 (374)
T ss_pred             CCEEEeCC-CCCcHHHHH
Confidence            99999988 665556554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.75  E-value=0.00026  Score=68.68  Aligned_cols=97  Identities=11%  Similarity=0.384  Sum_probs=78.1

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEccccc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVK  198 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~  198 (371)
                      ||..-|-+++.+++.+.+.+++.++|.=+|.|.-|..+++.  .++|+|+|.|+.+++.+++++..++ +++++++++.+
T Consensus         1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            35556778889999999899999999999999999999986  3799999999999999999887653 89999999988


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      +...      +.. .....+|.|+.|+
T Consensus        81 l~~~------l~~-~~~~~vDgIl~DL  100 (305)
T TIGR00006        81 FFEH------LDE-LLVTKIDGILVDL  100 (305)
T ss_pred             HHHH------HHh-cCCCcccEEEEec
Confidence            6421      111 1224578888776

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.75  E-value=0.00015  Score=69.76  Aligned_cols=93  Identities=22%  Similarity=0.298  Sum_probs=65.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~  197 (371)
                      |+-..+....+...+   .+++||++-|=||.++...+..|+ +|++||.+..+++.+++|+.-++    +++++.+|+.
T Consensus       108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred             cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            454455555555543   578999999999999999888776 79999999999999999987543    7899999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.--.     +    ....+||+||.+||=
T Consensus       185 ~~l~~-----~----~~~~~fD~IIlDPPs  205 (286)
T PF10672_consen  185 KFLKR-----L----KKGGRFDLIILDPPS  205 (286)
T ss_dssp             HHHHH-----H----HHTT-EEEEEE--SS
T ss_pred             HHHHH-----H----hcCCCCCEEEECCCC
Confidence            74211     1    124689999999994

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.73  E-value=7.9e-05  Score=63.47  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=46.8

Q ss_pred             EEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccC--CCeEEEEccccc
Q 017450          144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~  198 (371)
                      ++||||||.|..+..++..+.  +|+++|.++.+++.++++++.+  +++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999998754  6999999999999999998754  468888776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.00032  Score=64.69  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=76.1

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQED  195 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD  195 (371)
                      ...+.++....+...+....++++||||.=||+++..+|..   +++|+++|+|++.++.+.+..+..+   .+++++|+
T Consensus        54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~  133 (237)
T KOG1663|consen   54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP  133 (237)
T ss_pred             ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence            36777888888888888888999999999999999888875   6799999999999999977765443   89999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      +.+.-.     +++++ .+.+.||.+|-
T Consensus       134 a~esLd-----~l~~~-~~~~tfDfaFv  155 (237)
T KOG1663|consen  134 ALESLD-----ELLAD-GESGTFDFAFV  155 (237)
T ss_pred             hhhhHH-----HHHhc-CCCCceeEEEE
Confidence            987421     22222 23577998884

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.65  E-value=0.00022  Score=73.24  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=72.5

Q ss_pred             cCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcc
Q 017450          123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQED  195 (371)
Q Consensus       123 fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD  195 (371)
                      |.++.......+..+  .+.++++|||+++|.|.=|..+++.   ...|+|+|+++..+..+++++...+  |+.+.+.|
T Consensus        93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D  172 (470)
T PRK11933         93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD  172 (470)
T ss_pred             EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            333333344444555  6789999999999999999999986   2589999999999999999998765  78899999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.++...           .+..||.|+.+.|=
T Consensus       173 ~~~~~~~-----------~~~~fD~ILvDaPC  193 (470)
T PRK11933        173 GRVFGAA-----------LPETFDAILLDAPC  193 (470)
T ss_pred             hhhhhhh-----------chhhcCeEEEcCCC
Confidence            8765321           12568999988883

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.61  E-value=0.00014  Score=68.33  Aligned_cols=72  Identities=21%  Similarity=0.263  Sum_probs=57.3

Q ss_pred             ccCcccCCCHHHHHHHHHHhc-----CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEE
Q 017450          118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (371)
Q Consensus       118 ~lGQ~fl~~~~v~~~i~~~l~-----~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi  192 (371)
                      ..|.-|+.+.+-..+++....     .....++||||+|.|..|..|+..-.+|++.|.++.|...++++     +.+++
T Consensus        66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl  140 (265)
T PF05219_consen   66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL  140 (265)
T ss_pred             cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence            456778888877777776552     22456899999999999999999888999999999999888875     56665


Q ss_pred             Ec
Q 017450          193 QE  194 (371)
Q Consensus       193 ~g  194 (371)
                      ..
T Consensus       141 ~~  142 (265)
T PF05219_consen  141 DI  142 (265)
T ss_pred             eh
Confidence            33

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.58  E-value=0.00044  Score=65.19  Aligned_cols=75  Identities=21%  Similarity=0.348  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .+++||-||-|.|..+..+++..  .+|++||+|+..++.+++.+..      .++++++.+|+..+--.          
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----------  145 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----------  145 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----------
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----------
Confidence            67899999999999999999874  6899999999999999998753      35899999999875321          


Q ss_pred             ccCC-CeeEEEecCC
Q 017450          213 KSSS-GFAKVVANIP  226 (371)
Q Consensus       213 ~~~~-~~d~VVaNlP  226 (371)
                       ... .||+|+.+++
T Consensus       146 -~~~~~yDvIi~D~~  159 (246)
T PF01564_consen  146 -TQEEKYDVIIVDLT  159 (246)
T ss_dssp             -SSST-EEEEEEESS
T ss_pred             -ccCCcccEEEEeCC
Confidence             224 7999998765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00063  Score=65.35  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=60.5

Q ss_pred             CEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC------CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~------~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ++||-||-|.|..++.++++.  .+++.||+|+..++.+++.+...      ++++++.+|+.++--.           .
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-----------~  146 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-----------C  146 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-----------C
Confidence            699999999999999999985  58999999999999999998632      5889999999886321           2


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      ..+||+|+.+.
T Consensus       147 ~~~fDvIi~D~  157 (282)
T COG0421         147 EEKFDVIIVDS  157 (282)
T ss_pred             CCcCCEEEEcC
Confidence            34799999864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.46  E-value=0.00052  Score=71.34  Aligned_cols=78  Identities=14%  Similarity=0.085  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ..+..+||||||.|.++..+|..  ...++|||+....+..+.......  .|+.++.+|+..+..      .    ...
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~----~~~  415 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------D----LPN  415 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------h----cCc
Confidence            35679999999999999999987  468999999999888877765443  489998888654321      1    134


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      ...|.|.-|.|=
T Consensus       416 ~sv~~i~i~FPD  427 (506)
T PRK01544        416 NSLDGIYILFPD  427 (506)
T ss_pred             ccccEEEEECCC
Confidence            568899998764

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.43  E-value=0.00021  Score=66.39  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=41.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI  186 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~~~  186 (371)
                      ..+..+|||||-+|.+|..+++. ++ .|+|+|||+.++..|+++++..
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            35778999999999999999997 54 7999999999999999998643

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.42  E-value=0.00043  Score=67.76  Aligned_cols=69  Identities=20%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .+|.++|||||++|..|..|+++|.+|+|||..+ |.    ..+...++|+.+.+|......            ....+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p------------~~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRP------------PRKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCC------------CCCCCC
Confidence            5788999999999999999999999999999543 33    333455789999999877642            135689


Q ss_pred             EEEecC
Q 017450          220 KVVANI  225 (371)
Q Consensus       220 ~VVaNl  225 (371)
                      .+|++.
T Consensus       273 wvVcDm  278 (357)
T PRK11760        273 WLVCDM  278 (357)
T ss_pred             EEEEec
Confidence            999875

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.39  E-value=0.0014  Score=61.21  Aligned_cols=109  Identities=15%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             CCCcccccCcccCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-
Q 017450          112 GRFPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-  187 (371)
Q Consensus       112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-  187 (371)
                      .-.+...+.|.+.+...++.+....+.-  -.|++||=+|=.--. ++..+.....+|+.+|+|+++++..++..+..+ 
T Consensus        13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl   92 (243)
T PF01861_consen   13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL   92 (243)
T ss_dssp             -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred             CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence            4467889999999999999988877754  368999999855443 223333346799999999999999998877655 


Q ss_pred             CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       188 ~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      +++.++.|+.+--.++          -.+.||+++.+|||.+.
T Consensus        93 ~i~~~~~DlR~~LP~~----------~~~~fD~f~TDPPyT~~  125 (243)
T PF01861_consen   93 PIEAVHYDLRDPLPEE----------LRGKFDVFFTDPPYTPE  125 (243)
T ss_dssp             -EEEE---TTS---TT----------TSS-BSEEEE---SSHH
T ss_pred             ceEEEEecccccCCHH----------HhcCCCEEEeCCCCCHH
Confidence            6899999987642221          23789999999999764

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.21  E-value=0.00066  Score=63.10  Aligned_cols=42  Identities=14%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      +.++|+|||+|.-++.+++.-.+|+|+|+++.|+..|++...
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~   76 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPP   76 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCC
Confidence            389999999997777888887899999999999999988764

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.11  E-value=0.0014  Score=60.99  Aligned_cols=66  Identities=20%  Similarity=0.238  Sum_probs=48.8

Q ss_pred             cccCCCHHHHHHHHHHhc-CCCC--CEEEEEcCcccHHHHHHHHhC----CeEEEEeCCHHHHHHHHHHhccC
Q 017450          121 QHYMLNSEINDQLAAAAA-VQEG--DIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASI  186 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~-~~~~--~~VLEIG~G~G~lt~~La~~~----~~V~aIE~d~~~i~~a~~~~~~~  186 (371)
                      ..|..|.+.+.+=...+. ....  .+|||||||.|.....+++-.    -.|+++|.+++.++..+++....
T Consensus        48 ~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~  120 (264)
T KOG2361|consen   48 NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD  120 (264)
T ss_pred             ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc
Confidence            357777776655443333 2222  279999999999999998852    57999999999999999886543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.06  E-value=0.0011  Score=59.08  Aligned_cols=75  Identities=23%  Similarity=0.423  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+.+|||+||++|..|..+++++   .+|+|||+.+.         ....++..+.+|+.+....+.+.+...  .....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence            34799999999999999999987   68999999876         122477888899876533222222211  01257


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      +|.|+++.-
T Consensus        92 ~dlv~~D~~  100 (181)
T PF01728_consen   92 FDLVLSDMA  100 (181)
T ss_dssp             ESEEEE---
T ss_pred             cceeccccc
Confidence            999999873

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.98  E-value=0.0053  Score=57.25  Aligned_cols=62  Identities=21%  Similarity=0.351  Sum_probs=49.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccc
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV  197 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~  197 (371)
                      ..+.......+..+|||||.|.|.++..+++.  +.+++..|. +..++.+++    .++++++.||+.
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f  153 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF  153 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH
Confidence            34555666667789999999999999999987  568999998 788888887    459999999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.0039  Score=61.95  Aligned_cols=97  Identities=18%  Similarity=0.256  Sum_probs=74.2

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC----CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~----~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~  196 (371)
                      |.++..........+++.+|++|||.-++.|.=|..+++..    ..|+|+|+|+.-+..+++++...+  |+.+++.|+
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~  217 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA  217 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence            34444444555567889999999999999999999999863    457999999999999999998776  778889998


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ....-..         .....||.|+...|=.
T Consensus       218 ~~~~~~~---------~~~~~fD~iLlDaPCS  240 (355)
T COG0144         218 RRLAELL---------PGGEKFDRILLDAPCS  240 (355)
T ss_pred             ccccccc---------cccCcCcEEEECCCCC
Confidence            7653210         1123599999988853

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.97  E-value=0.0043  Score=55.97  Aligned_cols=67  Identities=24%  Similarity=0.276  Sum_probs=52.8

Q ss_pred             EEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      +++|||+|-|.=+..++-.  ..+++.+|....-+..++.-....  .|++++++++.+.             .....||
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-------------~~~~~fd  117 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP-------------EYRESFD  117 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-------------TTTT-EE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-------------ccCCCcc
Confidence            8999999999977777654  568999999999888888776654  4899999999881             1246799


Q ss_pred             EEEe
Q 017450          220 KVVA  223 (371)
Q Consensus       220 ~VVa  223 (371)
                      .|++
T Consensus       118 ~v~a  121 (184)
T PF02527_consen  118 VVTA  121 (184)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.96  E-value=0.0049  Score=56.87  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchh
Q 017450          127 SEINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~  201 (371)
                      .++.+.+.-.-.... +++++|||+|.|.=+..||-  ...+|+-+|....-+..++.-....  +|++++++.++++..
T Consensus        52 rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~  131 (215)
T COG0357          52 RHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ  131 (215)
T ss_pred             HHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc
Confidence            344444443333334 68999999999998888763  3567999999999888888877654  489999999998753


Q ss_pred             hhhhhhHHHhhccCCC-eeEEEec--CCCcccHHHHHHhccCCC
Q 017450          202 RSHMLSLFERRKSSSG-FAKVVAN--IPFNISTDVIKQLLPMGD  242 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~-~d~VVaN--lPy~iss~il~~Ll~~g~  242 (371)
                      .             .. ||+|.+=  -+.+...++...|+..+.
T Consensus       132 ~-------------~~~~D~vtsRAva~L~~l~e~~~pllk~~g  162 (215)
T COG0357         132 E-------------KKQYDVVTSRAVASLNVLLELCLPLLKVGG  162 (215)
T ss_pred             c-------------cccCcEEEeehccchHHHHHHHHHhcccCC
Confidence            1             23 8888752  222334455556655543

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.95  E-value=0.0046  Score=59.56  Aligned_cols=96  Identities=20%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~  199 (371)
                      +...-....+..+.+.+++.|||..+|.|.=|..+++.   ...|+|.|+++..+..+++++...+  ++.++..|+.+.
T Consensus        69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~  148 (283)
T PF01189_consen   69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL  148 (283)
T ss_dssp             EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH
T ss_pred             ecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc
Confidence            33333444556678889999999999999999999986   3589999999999999999988765  788888888876


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ....          ....||.|+.+.|=.-+
T Consensus       149 ~~~~----------~~~~fd~VlvDaPCSg~  169 (283)
T PF01189_consen  149 DPKK----------PESKFDRVLVDAPCSGL  169 (283)
T ss_dssp             HHHH----------HTTTEEEEEEECSCCCG
T ss_pred             cccc----------cccccchhhcCCCccch
Confidence            4321          12459999999885443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=96.95  E-value=0.0062  Score=57.96  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=57.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      ..+++||=||-|.|...+.++++..+|+-||+|+++++.+++.++.      .++++++.. +.+              .
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--------------~  135 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--------------L  135 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--------------c
Confidence            4678999999999999999999867999999999999999996653      257888751 111              1


Q ss_pred             cCCCeeEEEecCCC
Q 017450          214 SSSGFAKVVANIPF  227 (371)
Q Consensus       214 ~~~~~d~VVaNlPy  227 (371)
                      ..+.||+||....|
T Consensus       136 ~~~~fDVIIvDs~~  149 (262)
T PRK00536        136 DIKKYDLIICLQEP  149 (262)
T ss_pred             cCCcCCEEEEcCCC
Confidence            23579999998544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.93  E-value=0.0036  Score=57.43  Aligned_cols=55  Identities=24%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             EEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450          145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (371)
Q Consensus       145 VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~  199 (371)
                      |.||||--|++..+|++.+.  +++++|+++.-++.|++++...+   ++++..||.++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~   60 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV   60 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence            68999999999999999875  89999999999999999998764   799999998874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.89  E-value=0.0052  Score=59.72  Aligned_cols=93  Identities=13%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~  203 (371)
                      |-+++.+++.+.+.++...+|.=-|.|..|..+++.  +++|+|+|.|+.+++.+++++... +++.++++++.++.-. 
T Consensus         6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~-   84 (310)
T PF01795_consen    6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEY-   84 (310)
T ss_dssp             -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHH-
T ss_pred             cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHH-
Confidence            456778888888889999999999999999999986  579999999999999999998765 4899999999887532 


Q ss_pred             hhhhHHHhhccCCCeeEEEecC
Q 017450          204 HMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                           +........+|.|+.++
T Consensus        85 -----l~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   85 -----LKELNGINKVDGILFDL  101 (310)
T ss_dssp             -----HHHTTTTS-EEEEEEE-
T ss_pred             -----HHHccCCCccCEEEEcc
Confidence                 11101235688888766

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.86  E-value=0.003  Score=60.50  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=59.0

Q ss_pred             EEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV  222 (371)
                      +|+|+.||.|.++..+.+.|.+ |.++|+|+..++..+.|+..   . ++.+|+.++...+.          .+.+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~----------~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDF----------IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhc----------CCCCCEEE
Confidence            5899999999999999888875 77999999999999998753   2 67888888764310          25689999


Q ss_pred             ecCCCcccH
Q 017450          223 ANIPFNIST  231 (371)
Q Consensus       223 aNlPy~iss  231 (371)
                      +.+|-.-.|
T Consensus        68 ~gpPCq~fS   76 (275)
T cd00315          68 GGFPCQPFS   76 (275)
T ss_pred             eCCCChhhh
Confidence            999975443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PHA01634 hypothetical protein

Probab=96.82  E-value=0.0025  Score=53.74  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhcc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      .+++|+|||.+.|.++++++-+|+ +|+++|.++.+.+..+++++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            578999999999999999999976 799999999999999998864

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.81  E-value=0.0021  Score=57.99  Aligned_cols=88  Identities=19%  Similarity=0.333  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~  205 (371)
                      ..++.+...-+.-.+++|||.|+|+|--+...+..|+ .|++.|+++...+.++-|.+.++ ++.+.+.|..- +     
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~-----  139 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S-----  139 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----
Confidence            4455566555556789999999999999998888875 79999999999999888887776 77888888765 2     


Q ss_pred             hhHHHhhccCCCeeEEE-ecCCCccc
Q 017450          206 LSLFERRKSSSGFAKVV-ANIPFNIS  230 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VV-aNlPy~is  230 (371)
                               ++.+|+++ |++-|+-+
T Consensus       140 ---------~~~~Dl~LagDlfy~~~  156 (218)
T COG3897         140 ---------PPAFDLLLAGDLFYNHT  156 (218)
T ss_pred             ---------CcceeEEEeeceecCch
Confidence                     24577665 55666543

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.80  E-value=0.0053  Score=60.44  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--------CC----CeEEEEcccccchhhhhhhh
Q 017450          141 EGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       141 ~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--------~~----~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ++.+|||+|||-|. +..+....-.+++|+|++...++.|++++..        ..    ...++.+|.....+.+... 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~-  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP-  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS-
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc-
Confidence            67899999999777 5555554456899999999999999999821        11    3467788887654432110 


Q ss_pred             HHHhhccCCCeeEEEecCC
Q 017450          208 LFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlP  226 (371)
                           .....||+|-+-..
T Consensus       141 -----~~~~~FDvVScQFa  154 (331)
T PF03291_consen  141 -----PRSRKFDVVSCQFA  154 (331)
T ss_dssp             -----STTS-EEEEEEES-
T ss_pred             -----ccCCCcceeehHHH
Confidence                 11247888766543

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.62  E-value=0.0065  Score=55.19  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~  181 (371)
                      ...+..++++++...- .+|+.|||.-||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            4566788999987764 578999999999999888888889999999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.62  E-value=0.0069  Score=58.22  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      .+.+++++++...- .+|+.|||.-+|+|..+.+..+.|.+.+|+|++++.++.|++++.
T Consensus       193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            44677888887765 578999999999999888877789999999999999999999985

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.60  E-value=0.02  Score=55.11  Aligned_cols=78  Identities=13%  Similarity=0.290  Sum_probs=68.0

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC  199 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~  199 (371)
                      ..-+-+++..++.+.+.++...+|.=-|-|..+..+++..   ++++|+|.|+.+++.|++.+..+ ++++++++.+.++
T Consensus         6 ~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l   85 (314)
T COG0275           6 RHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL   85 (314)
T ss_pred             CccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence            3345678889999999999999999999999999999873   57999999999999999998775 4999999998876


Q ss_pred             hh
Q 017450          200 HI  201 (371)
Q Consensus       200 ~~  201 (371)
                      ..
T Consensus        86 ~~   87 (314)
T COG0275          86 AE   87 (314)
T ss_pred             HH
Confidence            53

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.35  E-value=0.0083  Score=55.55  Aligned_cols=78  Identities=12%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ....++|||||.|++...+...+. +++-+|.+-.|++.++..-.  +  .+....+|-..+++.            +..
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--p~i~~~~~v~DEE~Ldf~------------ens  137 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--PSIETSYFVGDEEFLDFK------------ENS  137 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--CceEEEEEecchhccccc------------ccc
Confidence            346899999999999999998864 89999999999998876532  3  344556887777764            356


Q ss_pred             eeEEEecCCCcccHH
Q 017450          218 FAKVVANIPFNISTD  232 (371)
Q Consensus       218 ~d~VVaNlPy~iss~  232 (371)
                      +|.|++.+-.+|+.+
T Consensus       138 ~DLiisSlslHW~Nd  152 (325)
T KOG2940|consen  138 VDLIISSLSLHWTND  152 (325)
T ss_pred             hhhhhhhhhhhhhcc
Confidence            888888877776653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.29  E-value=0.012  Score=56.68  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             EEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV  222 (371)
                      +++|+-||.|.++..+.+.|. -|.++|+|+..++..+.|+.     .+..+|+.+++....         +. ..|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l---------~~-~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDL---------PK-DVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHH---------HH-T-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccc---------cc-cceEEE
Confidence            689999999999999999986 47799999999999999985     788999999876521         11 489999


Q ss_pred             ecCC
Q 017450          223 ANIP  226 (371)
Q Consensus       223 aNlP  226 (371)
                      +.+|
T Consensus        67 ggpP   70 (335)
T PF00145_consen   67 GGPP   70 (335)
T ss_dssp             EE--
T ss_pred             eccC
Confidence            9887

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.27  E-value=0.024  Score=55.54  Aligned_cols=68  Identities=16%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHhc--cCCCeEE--EEcccccc
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC  199 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~a~~~~~--~~~~v~v--i~gD~~~~  199 (371)
                      ...|++.+.  ++..++|+|||.|.=|..|++.      ....++||++.++++.+.+++.  ..+.+++  +.||+.+.
T Consensus        67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        67 SSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            345555543  5668999999999988877653      2479999999999999999887  3466665  78998664

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.17  E-value=0.0082  Score=60.19  Aligned_cols=53  Identities=36%  Similarity=0.498  Sum_probs=44.8

Q ss_pred             EEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      .|||||+|||.|+...+..|+ .|+|+|.-..|.+.|++....+|   +++++..--
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS  125 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS  125 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence            799999999999988887765 79999999999999999887764   777775433

>PRK13699 putative methylase; Provisional

Probab=96.16  E-value=0.021  Score=53.27  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      ..+.++.+.++.... .+|+.|||.-||+|..+.+..+.|.+.+|+|++++.++.+.+++..
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            345677787776544 4789999999999998888888899999999999999999998764

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.13  E-value=0.011  Score=55.25  Aligned_cols=86  Identities=21%  Similarity=0.337  Sum_probs=54.3

Q ss_pred             HHHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---C--------CCeEEEEccccc
Q 017450          132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I--------DQLKVLQEDFVK  198 (371)
Q Consensus       132 ~i~~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~--------~~v~vi~gD~~~  198 (371)
                      .|+..++++++  ++|||.=+|.|.=+..++..|++|+++|.++-+...++.-+..   .        .+++++++|+.+
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            56677777665  4999999999999999998899999999999988776643321   1        278999999988


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +-..           ....+|+|.-+|=|.
T Consensus       144 ~L~~-----------~~~s~DVVY~DPMFp  162 (234)
T PF04445_consen  144 YLRQ-----------PDNSFDVVYFDPMFP  162 (234)
T ss_dssp             HCCC-----------HSS--SEEEE--S--
T ss_pred             HHhh-----------cCCCCCEEEECCCCC
Confidence            6321           236799999887663

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.03  Score=52.24  Aligned_cols=83  Identities=23%  Similarity=0.355  Sum_probs=54.7

Q ss_pred             HHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEE-EcccccchhhhhhhhHH
Q 017450          133 LAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       133 i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi-~gD~~~~~~~~~~~~l~  209 (371)
                      +++...+. +++.+||||+-||.+|..++++|+ +|+|||.-...+..   .++..+++.++ ..|+..+...+.     
T Consensus        70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~~-----  141 (245)
T COG1189          70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPEDF-----  141 (245)
T ss_pred             HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHHc-----
Confidence            33444433 688999999999999999999965 89999987543321   23333455444 355655544321     


Q ss_pred             HhhccCCCeeEEEecCCCc
Q 017450          210 ERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~  228 (371)
                           .+..|.+++..-|-
T Consensus       142 -----~~~~d~~v~DvSFI  155 (245)
T COG1189         142 -----TEKPDLIVIDVSFI  155 (245)
T ss_pred             -----ccCCCeEEEEeehh
Confidence                 23678888887763

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.94  E-value=0.013  Score=53.76  Aligned_cols=85  Identities=15%  Similarity=0.124  Sum_probs=49.4

Q ss_pred             cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHH-HHHHhccCCCe
Q 017450          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGL-VRERFASIDQL  189 (371)
Q Consensus       117 k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~-a~~~~~~~~~v  189 (371)
                      .++|...+-.|.-...+-+.+--.+++.|+|+|.-.|.++..+|..      .++|+|||+|-+.... +.+...-.++|
T Consensus         8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI   87 (206)
T PF04989_consen    8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI   87 (206)
T ss_dssp             EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred             cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence            5667666666655444444444446789999999999999888762      3699999998654432 22221222589


Q ss_pred             EEEEcccccchh
Q 017450          190 KVLQEDFVKCHI  201 (371)
Q Consensus       190 ~vi~gD~~~~~~  201 (371)
                      ++++||..+...
T Consensus        88 ~~i~Gds~d~~~   99 (206)
T PF04989_consen   88 TFIQGDSIDPEI   99 (206)
T ss_dssp             EEEES-SSSTHH
T ss_pred             EEEECCCCCHHH
Confidence            999999987654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.71  E-value=0.019  Score=56.11  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=54.4

Q ss_pred             EEEEcCcccHHHHHHHHhCCeE-EEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          145 VLEIGPGTGSLTNVLLNAGATV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       145 VLEIG~G~G~lt~~La~~~~~V-~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      |+|+-||.|.++..+.+.|.++ .++|+|+..++..+.|+.   + .++++|+.+++..+           .+..|++++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~-----------~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSD-----------IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhh-----------CCCcCEEEe
Confidence            6899999999999998888875 589999999999999875   3 56678988876432           245799999


Q ss_pred             cCC
Q 017450          224 NIP  226 (371)
Q Consensus       224 NlP  226 (371)
                      .+|
T Consensus        66 g~P   68 (315)
T TIGR00675        66 GFP   68 (315)
T ss_pred             cCC
Confidence            887

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.67  E-value=0.044  Score=50.16  Aligned_cols=76  Identities=17%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++..|+|+|+..|.-+..+++..   ..|+|||+++-         ...+++.++++|+.+-+..+.+...    ....
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~----l~~~  110 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEA----LGGA  110 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHH----cCCC
Confidence            478999999999999999999873   24999999864         1234799999999876544322221    1233


Q ss_pred             CeeEEEecCCCc
Q 017450          217 GFAKVVANIPFN  228 (371)
Q Consensus       217 ~~d~VVaNlPy~  228 (371)
                      +.|+|++.+.-+
T Consensus       111 ~~DvV~sD~ap~  122 (205)
T COG0293         111 PVDVVLSDMAPN  122 (205)
T ss_pred             CcceEEecCCCC
Confidence            469999875433

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.63  E-value=0.051  Score=49.74  Aligned_cols=58  Identities=26%  Similarity=0.261  Sum_probs=41.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCe-EEEEcccccc
Q 017450          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKC  199 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v-~vi~gD~~~~  199 (371)
                      +.+|||||||||-.+.+++..  .....--|.|+.............  +|+ .-+.-|+.+-
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~   88 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP   88 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence            336999999999999999987  457789999999876666655433  243 2334455443

The function of this family is unknown.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.62  E-value=0.041  Score=52.68  Aligned_cols=56  Identities=14%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID  187 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~  187 (371)
                      .+...+....+.+|||+|+|+|.-+....+.   -.+++++|.++.|.+.++..+...+
T Consensus        24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~   82 (274)
T PF09243_consen   24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP   82 (274)
T ss_pred             HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence            3333333346779999999999866555543   3479999999999999988776543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.61  E-value=0.036  Score=52.13  Aligned_cols=59  Identities=25%  Similarity=0.342  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~  199 (371)
                      .+++|+|||||.=-++......  +..++|+|+|..+++.+...+...+ +.++...|.+.-
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~  166 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD  166 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc
Confidence            4789999999999999876654  4689999999999999998876654 777888888764

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.54  E-value=0.041  Score=51.09  Aligned_cols=100  Identities=14%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhcCC------CCCEEEEEcCcccHHHHHHH--HhCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEcc
Q 017450          128 EINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASID----QLKVLQED  195 (371)
Q Consensus       128 ~v~~~i~~~l~~~------~~~~VLEIG~G~G~lt~~La--~~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD  195 (371)
                      ..+..+..++...      ++-++||||.|--..=-.+-  +.|.+.+|-|+|+..++.|+..+..++    .+++....
T Consensus        59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk  138 (292)
T COG3129          59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK  138 (292)
T ss_pred             HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence            4556666655432      33478999887544322222  237899999999999999999987764    34544322


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHH
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il  234 (371)
                      =.+.-+..    .+   ...+.||...+|+||+-+.+-.
T Consensus       139 ~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da  170 (292)
T COG3129         139 DSDAIFNG----II---GKNERYDATLCNPPFHDSAADA  170 (292)
T ss_pred             Cccccccc----cc---cccceeeeEecCCCcchhHHHH
Confidence            11111111    11   1246799999999998876543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.46  E-value=0.046  Score=53.94  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHh--cc-------CCCeEEEEcccccchhhhhhhhH
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERF--AS-------IDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~--~~-------~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      +...+||-+|-|.|--.+.+.+.  -.+++-||.||+|++.++.+.  .+       .++++++..|+.++--.      
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~------  361 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT------  361 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh------
Confidence            45679999999999999999986  358999999999999998432  21       24899999999876321      


Q ss_pred             HHhhccCCCeeEEEecCCC
Q 017450          209 FERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy  227 (371)
                           ....||.||-++|-
T Consensus       362 -----a~~~fD~vIVDl~D  375 (508)
T COG4262         362 -----AADMFDVVIVDLPD  375 (508)
T ss_pred             -----hcccccEEEEeCCC
Confidence                 34579999988873

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.36  E-value=0.033  Score=54.10  Aligned_cols=82  Identities=21%  Similarity=0.316  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC----C----CeEEEEcccccchhhhhhhhHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~----~----~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ..+++.++++|||-|.=.+..-..| .+++|+||.+-.+..|+++..+.    .    .+.++.||-....+.+..    
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~----  190 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL----  190 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc----
Confidence            4578899999999988665555555 48999999999999999987642    1    468889998776554321    


Q ss_pred             HhhccCCCeeEEEecCC
Q 017450          210 ERRKSSSGFAKVVANIP  226 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlP  226 (371)
                      +  ...+.||+|-+-..
T Consensus       191 e--~~dp~fDivScQF~  205 (389)
T KOG1975|consen  191 E--FKDPRFDIVSCQFA  205 (389)
T ss_pred             c--CCCCCcceeeeeee
Confidence            1  12344888766433

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.33  E-value=0.05  Score=50.17  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhcc-CCC-eEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS-IDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~-~~~-v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ...++||.|+|+|..|..++.. ..+|-.||..+.+++.|++.+.. .++ .++.+....++.+            ....
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P------------~~~~  122 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP------------EEGK  122 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC------------CCCc
Confidence            3469999999999999877554 56899999999999999988765 223 3555555555432            2367


Q ss_pred             eeEEEec
Q 017450          218 FAKVVAN  224 (371)
Q Consensus       218 ~d~VVaN  224 (371)
                      +|+|...
T Consensus       123 YDlIW~Q  129 (218)
T PF05891_consen  123 YDLIWIQ  129 (218)
T ss_dssp             EEEEEEE
T ss_pred             EeEEEeh
Confidence            9999864

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.21  E-value=0.091  Score=48.46  Aligned_cols=59  Identities=17%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~  199 (371)
                      .+.++.||||--|+|+.+|.+.+  ..+++.|+++..++.|.+++...+   .+++..+|.+..
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~   79 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV   79 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence            45569999999999999999974  489999999999999999998764   678888888653

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.05  E-value=0.23  Score=46.08  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      +.+.+|.+||-+|.++|..-..++..   ...|+|||.+++....+-.-.+..+|+--+.+|+..-.--.         .
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~---------~  139 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR---------M  139 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT---------T
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh---------c
Confidence            34678999999999999999999986   35899999999877766655555579988899997532111         1


Q ss_pred             cCCCeeEEEecCCCcccHHH
Q 017450          214 SSSGFAKVVANIPFNISTDV  233 (371)
Q Consensus       214 ~~~~~d~VVaNlPy~iss~i  233 (371)
                      .-+..|+|+++..-.-...|
T Consensus       140 lv~~VDvI~~DVaQp~Qa~I  159 (229)
T PF01269_consen  140 LVEMVDVIFQDVAQPDQARI  159 (229)
T ss_dssp             TS--EEEEEEE-SSTTHHHH
T ss_pred             ccccccEEEecCCChHHHHH
Confidence            12578999998764333333

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=94.91  E-value=0.047  Score=47.79  Aligned_cols=47  Identities=9%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             EEEeCCHHHHHHHHHHhcc-----CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          167 LAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       167 ~aIE~d~~~i~~a~~~~~~-----~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      +|+|++++|++.|+++...     ..+++++++|+.++++.            .+.||.|+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~------------~~~fD~v~~~~   52 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD------------DCEFDAVTMGY   52 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC------------CCCeeEEEecc
Confidence            4899999999999876542     13799999999988652            35799998754

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.79  E-value=0.47  Score=45.71  Aligned_cols=60  Identities=18%  Similarity=0.137  Sum_probs=48.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-C---CeEEEEeCCHHHHHHHHHHhccCC--Ce-EEEEcccccc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-G---ATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKC  199 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~---~~V~aIE~d~~~i~~a~~~~~~~~--~v-~vi~gD~~~~  199 (371)
                      ..+-+||||.||.|..-.-..+. .   .+|...|.++..++..++.++..+  ++ ++.++|+.+.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            45669999999999976665554 2   479999999999999999887654  55 9999999874

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.64  E-value=0.1  Score=51.32  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC-CeeE
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS-GFAK  220 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~-~~d~  220 (371)
                      -+++|+-||.|.+...+...|.+ +.++|+|+..++..+.++..   -.++++|+.++..+..          .. .+|+
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~----------~~~~~Dv   70 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEAL----------RKSDVDV   70 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhc----------cccCCCE
Confidence            47999999999999999988876 66999999999999998863   5577788877654321          12 6899


Q ss_pred             EEecCC
Q 017450          221 VVANIP  226 (371)
Q Consensus       221 VVaNlP  226 (371)
                      +++.+|
T Consensus        71 ligGpP   76 (328)
T COG0270          71 LIGGPP   76 (328)
T ss_pred             EEeCCC
Confidence            999887

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.30  E-value=0.17  Score=52.58  Aligned_cols=103  Identities=24%  Similarity=0.381  Sum_probs=71.0

Q ss_pred             ccccCcccCCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHh---C---CeEEEEeCCHHHHHHHHHHhc--c
Q 017450          116 RKSLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFA--S  185 (371)
Q Consensus       116 ~k~lGQ~fl~~~~v~~~i~~~l~~~--~~~~VLEIG~G~G~lt~~La~~---~---~~V~aIE~d~~~i~~a~~~~~--~  185 (371)
                      .+.-|+ |.++..++..++..+...  ++..|.|.-||+|.+.......   +   ..+++-|....+...++.+..  .
T Consensus       191 ~t~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~  269 (501)
T TIGR00497       191 GKSGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN  269 (501)
T ss_pred             CCcCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence            344556 888999999998887654  5578999999999977654331   2   368999999999999998742  1


Q ss_pred             C--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          186 I--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       186 ~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      .  +...+..+|-+.-+.      +    ....++|.|++|+||..
T Consensus       270 ~~~~t~~~~~~dtl~~~d------~----~~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       270 IDYANFNIINADTLTTKE------W----ENENGFEVVVSNPPYSI  305 (501)
T ss_pred             CCccccCcccCCcCCCcc------c----cccccCCEEeecCCccc
Confidence            1  133444555443210      0    11245899999999964

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.29  E-value=0.29  Score=50.43  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh----hhHHHhh-ccCC
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSSS  216 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~----~~l~~~~-~~~~  216 (371)
                      -+++|+-||.|.++..+-..|.+ |.++|+|+.+.+.-+.|+...+...++.+|+.+++..+..    .+....+ ...+
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p  168 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP  168 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence            48999999999999999888875 6799999999999888875334556677888877643110    0000000 0123


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++++.+|
T Consensus       169 ~~DvL~gGpP  178 (467)
T PRK10458        169 DHDVLLAGFP  178 (467)
T ss_pred             CCCEEEEcCC
Confidence            5799999887

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.16  E-value=0.19  Score=40.41  Aligned_cols=53  Identities=32%  Similarity=0.506  Sum_probs=38.9

Q ss_pred             EEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCC--eEEEEccccc
Q 017450          145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK  198 (371)
Q Consensus       145 VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~--v~vi~gD~~~  198 (371)
                      ++|+|||+|..+ .++...   ..++++|.++.++..++........  +.+..+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence            999999999977 444432   4899999999999986655432111  6788888776

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.95  E-value=0.11  Score=45.19  Aligned_cols=74  Identities=14%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~  202 (371)
                      -++..++.+...+..+.+|+|+|.|..-...++.| ..-+|+|+++-++.+++-..-..   +...+...|.-+.++.
T Consensus        60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~  137 (199)
T KOG4058|consen   60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR  137 (199)
T ss_pred             HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence            34555667766676789999999999998888888 47999999999998877654222   2667888888877654

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=93.90  E-value=0.024  Score=51.74  Aligned_cols=75  Identities=19%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             HHhcCCCcccccCcccCCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       108 l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~  182 (371)
                      |.+-.+..--..|.-|+.+++--++++..-++   +.+.++||+|+|.|..|..|+..-.+|+|.|.+..|...+++.
T Consensus        76 ms~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen   76 MSQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             hhhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence            44445555566778899888887777665433   2457999999999999999998777899999999999998765

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=93.81  E-value=0.19  Score=47.85  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCcccH--HHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCC--eEEEEccccc
Q 017450          127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK  198 (371)
Q Consensus       127 ~~v~~~i~~~l~~~-~~~~VLEIG~G~G~--lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~--v~vi~gD~~~  198 (371)
                      ...+.+.+..+... .=...||||||.-.  .+..+++.   .++|+-||.|+-.+.+++..+...++  ..++++|+.+
T Consensus        53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD  132 (267)
T ss_dssp             HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred             HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence            34455566665544 44689999999654  45566654   67999999999999999999887766  8999999987


Q ss_pred             ch
Q 017450          199 CH  200 (371)
Q Consensus       199 ~~  200 (371)
                      ..
T Consensus       133 p~  134 (267)
T PF04672_consen  133 PE  134 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=93.70  E-value=0.21  Score=45.06  Aligned_cols=76  Identities=20%  Similarity=0.314  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEc-ccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~g-D~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|||+||..|.-+....++   ...|.|||+-.         +.....++++.+ |+.+-....   .+.+. .+.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~---ki~e~-lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYR---KIFEA-LPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHH---HHHHh-CCC
Confidence            47899999999999999988876   35799999742         222236777777 776643322   22222 233


Q ss_pred             CCeeEEEecCCCc
Q 017450          216 SGFAKVVANIPFN  228 (371)
Q Consensus       216 ~~~d~VVaNlPy~  228 (371)
                      -..|+|++++.-+
T Consensus       135 r~VdvVlSDMapn  147 (232)
T KOG4589|consen  135 RPVDVVLSDMAPN  147 (232)
T ss_pred             CcccEEEeccCCC
Confidence            5678999875433

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.60  E-value=0.27  Score=46.29  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             CCEEEEEcCcccHHHHHHHHh----------CCeEEEEeCCHHHHHHHHHHhcc
Q 017450          142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~----------~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      +-+|+|+|+|.|.++.-+++.          ..+++-||+++.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            359999999999999988763          13799999999999998888865

; PDB: 4F3N_A 1ZKD_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=93.56  E-value=0.5  Score=45.32  Aligned_cols=59  Identities=29%  Similarity=0.392  Sum_probs=38.7

Q ss_pred             CCEEEEEcCcccHHHHHHHH-h---CCeEEEEeCCHHHHHHHHHHhcc-C---CCeEEEEcccccch
Q 017450          142 GDIVLEIGPGTGSLTNVLLN-A---GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCH  200 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~-~---~~~V~aIE~d~~~i~~a~~~~~~-~---~~v~vi~gD~~~~~  200 (371)
                      +++|+=||+|.=-+|..+.. .   +..|+++|+|+..++.+++-... .   .+++++.+|+.+.+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~  187 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT  187 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence            35999999997666655544 3   45799999999999999987762 2   37899999998764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.37  E-value=0.39  Score=47.50  Aligned_cols=64  Identities=17%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             ccCCCHHHHHH--------HHHHhc---CCCCCEEEEEcCcccHHHHHHHHh----------CCeEEEEeCCHHHHHHHH
Q 017450          122 HYMLNSEINDQ--------LAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR  180 (371)
Q Consensus       122 ~fl~~~~v~~~--------i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~----------~~~V~aIE~d~~~i~~a~  180 (371)
                      .|++.+++-..        +++...   ...+-.++|||+|.|.+..-++..          ..++.-||.++++.+.=+
T Consensus        47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            58888776443        333332   222347999999999998877752          358999999999999888


Q ss_pred             HHhcc
Q 017450          181 ERFAS  185 (371)
Q Consensus       181 ~~~~~  185 (371)
                      ++++.
T Consensus       127 ~~L~~  131 (370)
T COG1565         127 ETLKA  131 (370)
T ss_pred             HHHhc
Confidence            88764

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=93.35  E-value=0.19  Score=48.87  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             EEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      +|||+|.-.+-..+-..  +..-+++|+|+..+..|+++...++   .+.+++....+..+.+...+     .....||.
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-----~~e~~ydF  181 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-----ESEIIYDF  181 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-----CccceeeE
Confidence            68877655543333222  5678999999999999999988654   56666664433322211000     11234899


Q ss_pred             EEecCCCccc
Q 017450          221 VVANIPFNIS  230 (371)
Q Consensus       221 VVaNlPy~is  230 (371)
                      +.+|+||.-.
T Consensus       182 cMcNPPFfe~  191 (419)
T KOG2912|consen  182 CMCNPPFFEN  191 (419)
T ss_pred             EecCCchhhc
Confidence            9999999654

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=93.03  E-value=0.029  Score=53.89  Aligned_cols=59  Identities=25%  Similarity=0.399  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCcccHHHH-HHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450          141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~-~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~  199 (371)
                      .+..|.|+-+|.||+|. .+...|+ .|+|+|.++..++.++.+...++   ...+++||-...
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~  257 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP  257 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence            45789999999999999 6677765 79999999999999999987653   345666665543

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=92.92  E-value=0.071  Score=42.91  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=23.0

Q ss_pred             EEEcCcccHHHHHHHHh---C--CeEEEEeCCHH---HHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~---~--~~V~aIE~d~~---~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ||||+..|.+|..+++.   .  .+++++|..+.   .-+.+++ ..-.++++++++|..+.-. .    +     ..++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-~----~-----~~~~   69 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-S----L-----PDGP   69 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-H----H-----HH--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-H----c-----CCCC
Confidence            79999999999998874   2  37999999994   3333333 1112489999999976421 1    1     1256


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      +|.++-+-
T Consensus        70 ~dli~iDg   77 (106)
T PF13578_consen   70 IDLIFIDG   77 (106)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEECC
Confidence            88887554

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.89  E-value=0.31  Score=48.49  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=35.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~  181 (371)
                      .+-+.|+|+|.|.|+++..|+-. |..|.|||-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            35578999999999999999875 7799999999877766553

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=92.39  E-value=0.13  Score=46.94  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=45.5

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---------CCeEEEEcccccc
Q 017450          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDFVKC  199 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---------~~v~vi~gD~~~~  199 (371)
                      -.+.|||||-|.+...|+..  ..-++|+||-....++.++++...         .|+.+...++...
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~  129 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF  129 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence            46899999999999999987  456999999888888887776532         3777887777765

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=92.36  E-value=0.39  Score=44.16  Aligned_cols=72  Identities=11%  Similarity=0.133  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450          130 NDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       130 ~~~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      ++.|++.+.-.+ +-.|-|.|||.+.++..+. .+.+|...|+-..             |-.++.+|+..+|++      
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~------  119 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLE------  119 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--------
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCC------
Confidence            577777776554 4589999999999986643 3457999997542             234778999999874      


Q ss_pred             HHhhccCCCeeEEEecCCC
Q 017450          209 FERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy  227 (371)
                            .+..|++|-.|-.
T Consensus       120 ------~~svDv~VfcLSL  132 (219)
T PF05148_consen  120 ------DESVDVAVFCLSL  132 (219)
T ss_dssp             ------TT-EEEEEEES--
T ss_pred             ------CCceeEEEEEhhh
Confidence                  3668998876654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=92.34  E-value=0.23  Score=45.82  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             cCcccccHHHHHHHHhhhc-CCCCcHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHH
Q 017450           77 SSIAGVQKGAASACIVCAR-SQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSL  155 (371)
Q Consensus        77 ~~i~~~~~~~r~~mv~~~~-~~~~~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~l  155 (371)
                      +.+||...++++..+-.-. |..++...+.+.+.......+..-                     ..-++|||||=+...
T Consensus         7 ~~~GGl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~---------------------~~lrlLEVGals~~N   65 (219)
T PF11968_consen    7 EALGGLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGR---------------------PKLRLLEVGALSTDN   65 (219)
T ss_pred             HHccCHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhcccccccc---------------------ccceEEeecccCCCC
Confidence            4567777777666553333 556677777777766444322211                     125899999864442


Q ss_pred             HHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          156 TNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       156 t~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ...  ..+ -.|+.||+++.             .-.+.+.|+++.+++.         .+.+.||+|+..+-.
T Consensus        66 ~~s--~~~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~---------~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   66 ACS--TSGWFDVTRIDLNSQ-------------HPGILQQDFMERPLPK---------NESEKFDVISLSLVL  114 (219)
T ss_pred             ccc--ccCceeeEEeecCCC-------------CCCceeeccccCCCCC---------CcccceeEEEEEEEE
Confidence            221  222 37999998763             3358899999987642         134679999877654

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=92.30  E-value=0.099  Score=52.51  Aligned_cols=61  Identities=13%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---C-CeEEEEcccccc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKC  199 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~-~v~vi~gD~~~~  199 (371)
                      .++|+.|.|+-||.|-++..++..++.|++-|.++++++.++.++.-+   + +++++..|+.++
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            457899999999999999999999999999999999999999998754   2 588998888664

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.20  E-value=0.31  Score=46.58  Aligned_cols=118  Identities=12%  Similarity=0.196  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhc---CCCcccccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHH-HHHHH--hCCeEEEEeCC
Q 017450          101 YHATIKALNSK---GRFPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLT-NVLLN--AGATVLAIEKD  172 (371)
Q Consensus       101 ~~~~~~~l~~~---~~~~~k~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G~G~lt-~~La~--~~~~V~aIE~d  172 (371)
                      +.++++.+++.   ...+...+.|-|.++...+.++.-.-  +...|+.|+=+|  .--|| ++++-  ...+|..||+|
T Consensus       107 f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDID  184 (354)
T COG1568         107 FKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDID  184 (354)
T ss_pred             HHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEech
Confidence            44555544433   34567889999999988877655433  233677899998  33333 33332  35689999999


Q ss_pred             HHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          173 QHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       173 ~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ++++....+..+..+  |++.+.-|..+--.++          -...||+++.++|+.+.
T Consensus       185 ERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~----------~~~kFDvfiTDPpeTi~  234 (354)
T COG1568         185 ERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED----------LKRKFDVFITDPPETIK  234 (354)
T ss_pred             HHHHHHHHHHHHHhCccchhheeehhcccChHH----------HHhhCCeeecCchhhHH
Confidence            999998887776554  6877777766532221          12579999999998664

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.05  E-value=0.22  Score=40.86  Aligned_cols=47  Identities=21%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCC
Q 017450          126 NSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD  172 (371)
Q Consensus       126 ~~~v~~~i~~~l~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d  172 (371)
                      |-.+++.++.+-..    .+...-+|||||.|-|...|...|.+=.|+|.-
T Consensus        39 DlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   39 DLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             HHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            33556666665432    234579999999999999999999888888853

; GO: 0008168 methyltransferase activity

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.79  E-value=0.39  Score=43.93  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=61.7

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      +.+.+|++||=+|+.+|....+++.- + ..++|||.+++....+-....+.+|+--+.+|+..-.--.   .+      
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~---~~------  142 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR---HL------  142 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh---hh------
Confidence            34678999999999999999999986 3 5799999999988877777776678888899987532111   11      


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      -+..|+|+.+..
T Consensus       143 Ve~VDviy~DVA  154 (231)
T COG1889         143 VEKVDVIYQDVA  154 (231)
T ss_pred             cccccEEEEecC
Confidence            245788887654

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=91.68  E-value=0.39  Score=44.32  Aligned_cols=45  Identities=22%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-C---CeEEEEeCCHHHHHHHHHHhc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-G---ATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~---~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ..+-++.|.-||.|++...+.-. +   ..|+|-|+|+++++.|++|+.
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            34559999999999987665542 2   479999999999999988863

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.67  E-value=0.33  Score=49.94  Aligned_cols=56  Identities=25%  Similarity=0.378  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhcC--CCC--CEEEEEcCcccHHHHHHHHhCCeEEEEe---CCHHHHHHHHHH
Q 017450          127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAIE---KDQHMVGLVRER  182 (371)
Q Consensus       127 ~~v~~~i~~~l~~--~~~--~~VLEIG~G~G~lt~~La~~~~~V~aIE---~d~~~i~~a~~~  182 (371)
                      ...++.|.+.+..  ..+  ..+||||||+|.++.+|.+++..+.++-   ..+..++.|.++
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR  161 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER  161 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence            3566677777665  333  4899999999999999999876544443   334566666554

; GO: 0008168 methyltransferase activity

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.60  E-value=0.8  Score=41.58  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             ccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHhccCCCe
Q 017450          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQL  189 (371)
Q Consensus       116 ~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~aIE~d~~~i~~a~~~~~~~~~v  189 (371)
                      ..+.|...+..+.-.-.+-+.+-..+++.|+|+|.-.|.++...|..    |  .+|+++|+|-.-...+...   .+.+
T Consensus        44 ~twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i  120 (237)
T COG3510          44 YTWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDI  120 (237)
T ss_pred             eeEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCe
Confidence            46778877777777666666666667889999999999999888863    5  5899999996654433322   3589


Q ss_pred             EEEEcccccchhhh
Q 017450          190 KVLQEDFVKCHIRS  203 (371)
Q Consensus       190 ~vi~gD~~~~~~~~  203 (371)
                      .+++|+-.+....+
T Consensus       121 ~f~egss~dpai~e  134 (237)
T COG3510         121 LFIEGSSTDPAIAE  134 (237)
T ss_pred             EEEeCCCCCHHHHH
Confidence            99999988765443

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=91.41  E-value=0.51  Score=47.51  Aligned_cols=86  Identities=14%  Similarity=0.213  Sum_probs=68.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+..+.+++|.+|||.-+..|.=|.++|..   -.-|+|.|.+...+..++.++...+  |..+.+.|..+++-..    
T Consensus       233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~----  308 (460)
T KOG1122|consen  233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE----  308 (460)
T ss_pred             eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc----
Confidence            445567889999999999999999999885   3479999999999999999988765  6677888888764321    


Q ss_pred             HHHhhccCCCeeEEEecCCCc
Q 017450          208 LFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            -++.||.|.-.-|=.
T Consensus       309 ------~~~~fDRVLLDAPCS  323 (460)
T KOG1122|consen  309 ------FPGSFDRVLLDAPCS  323 (460)
T ss_pred             ------cCcccceeeecCCCC
Confidence                  124799999887754

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=91.36  E-value=0.94  Score=38.29  Aligned_cols=84  Identities=13%  Similarity=0.280  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +++.+....   ..++|+|||-|.=. .+..|.+.|..|+++|+++.   .+.      ..+.++.-|+.+-++.     
T Consensus         4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l~-----   66 (127)
T PF03686_consen    4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNLE-----   66 (127)
T ss_dssp             HHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HH-----
T ss_pred             HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCHH-----
Confidence            344455443   34599999988654 56677778999999999998   111      2677888998875432     


Q ss_pred             HHHhhccCCCeeEEEe-cCCCcccHHHHH
Q 017450          208 LFERRKSSSGFAKVVA-NIPFNISTDVIK  235 (371)
Q Consensus       208 l~~~~~~~~~~d~VVa-NlPy~iss~il~  235 (371)
                      +      ....|.|.| ++|-.+..+++.
T Consensus        67 i------Y~~a~lIYSiRPP~El~~~il~   89 (127)
T PF03686_consen   67 I------YEGADLIYSIRPPPELQPPILE   89 (127)
T ss_dssp             H------HTTEEEEEEES--TTSHHHHHH
T ss_pred             H------hcCCcEEEEeCCChHHhHHHHH
Confidence            1      135788887 677666666653

; PDB: 2K4M_A.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.28  E-value=3.2  Score=40.11  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .|+.||==|.|.|.   ++..+|++|++++..|+++.......+.+++.+.+....+|..+.+.-....+.++  .+-+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence            57889999988885   56677778999999999999888888877766678888899887543222222222  23467


Q ss_pred             eeEEEecC-------CCcccHHHHHHhccC
Q 017450          218 FAKVVANI-------PFNISTDVIKQLLPM  240 (371)
Q Consensus       218 ~d~VVaNl-------Py~iss~il~~Ll~~  240 (371)
                      .+++|-|-       -++.+.+.+++.++-
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~v  144 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDV  144 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHH
Confidence            88888772       236667777766553

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.58  E-value=0.53  Score=42.88  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCcccH----HHHHHHHh-----C--CeEEEEeCCHHHHHHHHH
Q 017450          141 EGDIVLEIGPGTGS----LTNVLLNA-----G--ATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       141 ~~~~VLEIG~G~G~----lt~~La~~-----~--~~V~aIE~d~~~i~~a~~  181 (371)
                      +.-+|+..||++|.    ++..+.+.     +  .+|+|.|+|+.+++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            34599999999997    44444441     2  389999999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=90.57  E-value=0.69  Score=44.24  Aligned_cols=38  Identities=26%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHH
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL  178 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~  178 (371)
                      .+.+||=.|||.|.|+..+|..|..+.|.|.+-.|+-.
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~   93 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA   93 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH
Confidence            45699999999999999999999999999999988643

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.33  E-value=1.1  Score=36.24  Aligned_cols=64  Identities=20%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             CcccHHHHHHHHh---C-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          150 PGTGSLTNVLLNA---G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       150 ~G~G~lt~~La~~---~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      ||.|.++..+++.   + .+|+.+|.|++.++.+++.     .+.++.||+.+...-..        ......+.++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l~~--------a~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVLER--------AGIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHHHH--------TTGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHHhh--------cCccccCEEEEcc
Confidence            5667777777763   4 4899999999998888765     47899999988643211        1224566666544


Q ss_pred             C
Q 017450          226 P  226 (371)
Q Consensus       226 P  226 (371)
                      +
T Consensus        71 ~   71 (116)
T PF02254_consen   71 D   71 (116)
T ss_dssp             S
T ss_pred             C
Confidence            4

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=90.18  E-value=1.9  Score=39.98  Aligned_cols=82  Identities=18%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .....+.+. .+|.+||+||.|.|.....+.+.. .+-+-||..++..+..+..--. ..||.++.|-..+.-..     
T Consensus        91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~-----  164 (271)
T KOG1709|consen   91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT-----  164 (271)
T ss_pred             HHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc-----
Confidence            333333333 567899999999999998888774 4667899999999998876432 24888888776654211     


Q ss_pred             HHHhhccCCCeeEEE
Q 017450          208 LFERRKSSSGFAKVV  222 (371)
Q Consensus       208 l~~~~~~~~~~d~VV  222 (371)
                           ...+.||-|.
T Consensus       165 -----L~d~~FDGI~  174 (271)
T KOG1709|consen  165 -----LPDKHFDGIY  174 (271)
T ss_pred             -----ccccCcceeE
Confidence                 1235588877

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=89.75  E-value=0.54  Score=44.57  Aligned_cols=72  Identities=10%  Similarity=0.136  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          128 EINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~-~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      +=++.|+..+...++ -.|-|+|||.+-++.   ..-.+|...|+-..             |-+++.+|+.+++++    
T Consensus       166 nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~-------------~~~V~~cDm~~vPl~----  225 (325)
T KOG3045|consen  166 NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV-------------NERVIACDMRNVPLE----  225 (325)
T ss_pred             ChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeecC-------------CCceeeccccCCcCc----
Confidence            346778888776654 478899999998765   23457888886422             556888999998864    


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                              .+..|++|..|-.
T Consensus       226 --------d~svDvaV~CLSL  238 (325)
T KOG3045|consen  226 --------DESVDVAVFCLSL  238 (325)
T ss_pred             --------cCcccEEEeeHhh
Confidence                    3668888865543

>PRK12829 short chain dehydrogenase; Provisional

Probab=89.58  E-value=4.2  Score=37.50  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+++++|=+|++ |.++..+    +++|.+|++++.++...+...+..... ++.++.+|+.+..--....+...  ...
T Consensus         9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~   84 (264)
T PRK12829          9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERF   84 (264)
T ss_pred             cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            467899988875 5555544    445889999999987766555544322 56888999886542111111111  112


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      ++.|.||.|..
T Consensus        85 ~~~d~vi~~ag   95 (264)
T PRK12829         85 GGLDVLVNNAG   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            45788887754

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=89.57  E-value=1.3  Score=42.90  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             ccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccH----HHHHHHHh------CCeEEEEeCCHHHHHHHHHH
Q 017450          122 HYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS----LTNVLLNA------GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~----lt~~La~~------~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .|.-++...+.+...+... ..-+|+..||+||-    ++..+.+.      ..+|+|+|+|+.+++.|++-
T Consensus        95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            3555555555555544222 23599999999997    33444442      24799999999999999865

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=89.11  E-value=1.5  Score=41.74  Aligned_cols=60  Identities=23%  Similarity=0.282  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      -+..+..+++.. ...+++.|||.-+|+|.........+.+.+++|++++.++.+.+++..
T Consensus       207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence            345666777776 667899999999999998887777789999999999999999999864

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.73  E-value=0.69  Score=46.23  Aligned_cols=78  Identities=12%  Similarity=0.207  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHH----------hcc-CCCeEE
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKV  191 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~----------~~~-~~~v~v  191 (371)
                      +.++-...+++.+++.+++.-.|+|.|.|.+....+..+  ..=+|+|+.....+.+..+          +.. .+.++.
T Consensus       176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~  255 (419)
T KOG3924|consen  176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET  255 (419)
T ss_pred             hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence            346677889999999999999999999999988888763  3678999875554444332          111 135789


Q ss_pred             EEcccccchhh
Q 017450          192 LQEDFVKCHIR  202 (371)
Q Consensus       192 i~gD~~~~~~~  202 (371)
                      ++|++..-...
T Consensus       256 i~gsf~~~~~v  266 (419)
T KOG3924|consen  256 IHGSFLDPKRV  266 (419)
T ss_pred             cccccCCHHHH
Confidence            99999886543

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=88.69  E-value=1  Score=44.37  Aligned_cols=55  Identities=18%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      -+..+|+|.|+|..+..+...-.+|-+|+.|...+-.+...+.  +.|+-+.||..+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq  232 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQ  232 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceecccccc
Confidence            3799999999999999999876689999999999988888874  357777888765

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=88.60  E-value=1.6  Score=38.54  Aligned_cols=99  Identities=16%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             cCcccCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcc
Q 017450          119 LGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (371)
Q Consensus       119 lGQ~fl~~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La-~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD  195 (371)
                      +.| |.-+.+.++.+++.+.-  .++.+|+=|||=+-+-...-. ..+.+++..|+|.+......       + +++.-|
T Consensus         2 lsQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~-------~-~F~fyD   72 (162)
T PF10237_consen    2 LSQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGG-------D-EFVFYD   72 (162)
T ss_pred             ccc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCC-------c-ceEECC
Confidence            346 66677777777776653  456799999997766554431 13568999999988755321       3 355555


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                      ..+-.      .+.+.  -.+.+|+||.+||| ++.+++.
T Consensus        73 ~~~p~------~~~~~--l~~~~d~vv~DPPF-l~~ec~~  103 (162)
T PF10237_consen   73 YNEPE------ELPEE--LKGKFDVVVIDPPF-LSEECLT  103 (162)
T ss_pred             CCChh------hhhhh--cCCCceEEEECCCC-CCHHHHH
Confidence            44311      11111  13689999999999 6666653

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK05867 short chain dehydrogenase; Provisional

Probab=88.37  E-value=3.8  Score=37.80  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.+++-.+.+.+.+... +++..+.+|+.+..--. ....+.+   ..
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA---EL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            46789999976553   45555667899999999988777666655433 36778888987643211 1111111   12


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|.-
T Consensus        85 g~id~lv~~ag   95 (253)
T PRK05867         85 GGIDIAVCNAG   95 (253)
T ss_pred             CCCCEEEECCC
Confidence            56889988753

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=88.26  E-value=1.3  Score=43.87  Aligned_cols=90  Identities=23%  Similarity=0.263  Sum_probs=64.2

Q ss_pred             HHhcCCCCCEEEEEcCcccHHHHHHHHhCC------eEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhh
Q 017450          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~~~------~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~  206 (371)
                      -.++++++++|||.-+..|.-|..|.+...      .|+|=|.|...+..+.......  +++.+...|+...+-...- 
T Consensus       149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-  227 (375)
T KOG2198|consen  149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-  227 (375)
T ss_pred             hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-
Confidence            455778999999999999999999988632      7999999999888888777543  3667777776655422100 


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ++..  .....||.|..+.|=
T Consensus       228 ~~~~--~~~~~fDrVLvDVPC  246 (375)
T KOG2198|consen  228 DGND--KEQLKFDRVLVDVPC  246 (375)
T ss_pred             cCch--hhhhhcceeEEeccc
Confidence            0000  123569999998884

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=88.09  E-value=2.7  Score=39.95  Aligned_cols=72  Identities=14%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-------CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      ..|.+.-.+.+...++|.|||.|.|+.++++.-       ..++.||....-. ..-..+...   +.++=+..|+.+++
T Consensus         8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen    8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD   86 (259)
T ss_pred             HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence            333333334566799999999999999999852       4789999865333 222222222   25666788998888


Q ss_pred             hhh
Q 017450          201 IRS  203 (371)
Q Consensus       201 ~~~  203 (371)
                      +..
T Consensus        87 l~~   89 (259)
T PF05206_consen   87 LSK   89 (259)
T ss_pred             hhh
Confidence            754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=87.84  E-value=4.1  Score=37.77  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~~d  219 (371)
                      +||=.|.+.|.   ++..+++.|++|+.++.++.-.+.+.+.+...+++.++.+|+.+...-. ......+   ..+..|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~---~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE---LLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH---hcCCCC
Confidence            46777765443   4455556789999999998877766666554457788889987643211 1111111   235689


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      ++|.|.-
T Consensus        79 ~li~naG   85 (259)
T PRK08340         79 ALVWNAG   85 (259)
T ss_pred             EEEECCC
Confidence            9987753

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=87.70  E-value=2.5  Score=43.38  Aligned_cols=63  Identities=17%  Similarity=0.328  Sum_probs=51.7

Q ss_pred             CCC-EEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHh-ccCCCeEEEEcccccchhhh
Q 017450          141 EGD-IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       141 ~~~-~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~-~~~~~v~vi~gD~~~~~~~~  203 (371)
                      +-+ ++|.+|||.-.++..+-+-|. .|+.+|+|+-.++...... ...+-.++...|+..+.+++
T Consensus        47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed  112 (482)
T KOG2352|consen   47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED  112 (482)
T ss_pred             hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence            445 899999999999988888875 6999999999998777665 34457899999999988753

>PRK06172 short chain dehydrogenase; Provisional

Probab=87.69  E-value=4.8  Score=37.02  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|+.+..-- .......+   ..
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~~   82 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA---AY   82 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---Hh
Confidence            46789999875433   33445556889999999987666555554433 3688889998774321 11111111   12


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      ++.|.+|.|.-
T Consensus        83 g~id~li~~ag   93 (253)
T PRK06172         83 GRLDYAFNNAG   93 (253)
T ss_pred             CCCCEEEECCC
Confidence            46788887753

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.49  E-value=3.2  Score=41.80  Aligned_cols=89  Identities=20%  Similarity=0.312  Sum_probs=61.8

Q ss_pred             CEEEEEcCcc-cHHHHHH-HHhC-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          143 DIVLEIGPGT-GSLTNVL-LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       143 ~~VLEIG~G~-G~lt~~L-a~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .+||=||||. |...... ++.+ .+|+..|++.+-++.+.....  ++++.+.-|+.+.+-.   .+++      ..+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al---~~li------~~~d   70 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDAL---VALI------KDFD   70 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHH---HHHH------hcCC
Confidence            4789999963 3333333 4445 699999999888887776643  2788999999886421   1222      2359


Q ss_pred             EEEecCCCcccHHHHHHhccCCC
Q 017450          220 KVVANIPFNISTDVIKQLLPMGD  242 (371)
Q Consensus       220 ~VVaNlPy~iss~il~~Ll~~g~  242 (371)
                      +|+.-+|++....+++...+.|-
T Consensus        71 ~VIn~~p~~~~~~i~ka~i~~gv   93 (389)
T COG1748          71 LVINAAPPFVDLTILKACIKTGV   93 (389)
T ss_pred             EEEEeCCchhhHHHHHHHHHhCC
Confidence            99999999888888776665543

>PRK08339 short chain dehydrogenase; Provisional

Probab=87.39  E-value=5.2  Score=37.38  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+...  .++.++.+|+.+..--+.   +++.....
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~---~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLER---TVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHH---HHHHHHhh
Confidence            46788888876554   55566667999999999987766665554322  368888999887542211   21111122


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.+|.|.
T Consensus        84 g~iD~lv~na   93 (263)
T PRK08339         84 GEPDIFFFST   93 (263)
T ss_pred             CCCcEEEECC
Confidence            5678888774

>PRK07024 short chain dehydrogenase; Provisional

Probab=87.35  E-value=5.4  Score=36.90  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~~~  218 (371)
                      ++||=.|++.|.   ++..|++.|.+|+.++.+++..+.+.+.+...+++.++.+|+.+...- +....+.+   ..+..
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~g~i   79 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIA---AHGLP   79 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH---hCCCC
Confidence            467778865433   344455568899999999877766555543323688889998774321 11111111   23457


Q ss_pred             eEEEecC
Q 017450          219 AKVVANI  225 (371)
Q Consensus       219 d~VVaNl  225 (371)
                      |++|.|.
T Consensus        80 d~lv~~a   86 (257)
T PRK07024         80 DVVIANA   86 (257)
T ss_pred             CEEEECC
Confidence            8888774

>PLN02253 xanthoxin dehydrogenase

Probab=87.34  E-value=5.2  Score=37.51  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++ |.++.    .|++.|.+|+.++.+++..+.+.+.+....++.++.+|..+...-+...+...  ...+
T Consensus        17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~~g   93 (280)
T PLN02253         17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV--DKFG   93 (280)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH--HHhC
Confidence            46788888854 44444    44556899999999887666555554333468889999987543211111111  1224


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        94 ~id~li~~A  102 (280)
T PLN02253         94 TLDIMVNNA  102 (280)
T ss_pred             CCCEEEECC
Confidence            678888764

>PRK07063 short chain dehydrogenase; Provisional

Probab=87.07  E-value=5.5  Score=36.82  Aligned_cols=82  Identities=16%  Similarity=0.204  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR-SHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~-~~~~~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++-.+.+.+.+..   ..++.++.+|..+..-- .....+.+   
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE---   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH---
Confidence            46789988876443   4455566789999999998877766655543   23678888998764321 11111111   


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+..|.+|.|.
T Consensus        83 ~~g~id~li~~a   94 (260)
T PRK07063         83 AFGPLDVLVNNA   94 (260)
T ss_pred             HhCCCcEEEECC
Confidence            225688888774

>PRK07454 short chain dehydrogenase; Provisional

Probab=86.87  E-value=7.1  Score=35.56  Aligned_cols=83  Identities=10%  Similarity=0.047  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccHHH----HHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ..+++|=.|+ +|.++    ..++++|.+|++++.++.-.+.+.+.+... .++.++.+|+.+.+.-....+.+.  ...
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELL--EQF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4567888885 45444    444556889999999987665555544332 378889999987542211111111  112


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|.-
T Consensus        82 ~~id~lv~~ag   92 (241)
T PRK07454         82 GCPDVLINNAG   92 (241)
T ss_pred             CCCCEEEECCC
Confidence            45788887753

>PRK06194 hypothetical protein; Provisional

Probab=86.77  E-value=5.6  Score=37.37  Aligned_cols=83  Identities=10%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .+++||=.|.+.|.   ++..|++.|.+|+.++.+.+..+.+.+.+... .++.++.+|+.+...- .....+.+   ..
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---~~   81 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE---RF   81 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            35688877764332   34445556899999999877665554444332 3678899998765321 11111111   12


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.||.|.-
T Consensus        82 g~id~vi~~Ag   92 (287)
T PRK06194         82 GAVHLLFNNAG   92 (287)
T ss_pred             CCCCEEEECCC
Confidence            45788888754

>PRK05866 short chain dehydrogenase; Provisional

Probab=86.54  E-value=5.9  Score=37.85  Aligned_cols=83  Identities=19%  Similarity=0.324  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..+++.|.+|++++++++..+.+.+.+... +.+.++.+|+.+...-....+.+.  ...+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~g  116 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE--KRIG  116 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            45789988875443   34445556889999999987766665554332 367788899886542211111111  1224


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus       117 ~id~li~~A  125 (293)
T PRK05866        117 GVDILINNA  125 (293)
T ss_pred             CCCEEEECC
Confidence            678888775

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=86.50  E-value=1.9  Score=41.31  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             CCEEEEEcCcccH----HHHHHHHhC-------CeEEEEeCCHHHHHHHHH
Q 017450          142 GDIVLEIGPGTGS----LTNVLLNAG-------ATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       142 ~~~VLEIG~G~G~----lt~~La~~~-------~~V~aIE~d~~~i~~a~~  181 (371)
                      .-+|+.+||+||-    ++..|.+..       .+|+|.|+|...++.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            4599999999996    344444432       489999999999998874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=86.46  E-value=6  Score=36.67  Aligned_cols=81  Identities=23%  Similarity=0.371  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~~  216 (371)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+...  .++.++.+|..+...-... ....+   ..+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g   79 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTVD---AFG   79 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHH---hcC
Confidence            46789999875443   344555668999999999877766555442  2677888998775422111 11111   235


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|.-
T Consensus        80 ~id~li~~ag   89 (263)
T PRK06200         80 KLDCFVGNAG   89 (263)
T ss_pred             CCCEEEECCC
Confidence            6889998754

>PRK09072 short chain dehydrogenase; Provisional

Probab=86.28  E-value=7  Score=36.24  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ++.+||=.|++.|.   ++..++++|.+|+++++++.-.+.+...+...+++.++.+|..+..--....+...   ..+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcCC
Confidence            45678888876433   45556667899999999988776665554333478888999877542211111111   1245


Q ss_pred             eeEEEecCCC
Q 017450          218 FAKVVANIPF  227 (371)
Q Consensus       218 ~d~VVaNlPy  227 (371)
                      .|.+|.|..+
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            7888877543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=86.22  E-value=7  Score=35.97  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhh-ccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR-KSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~  215 (371)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|..+..--.   .+++.. ...
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVA---AAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHH---HHHHHHHHhc
Confidence            57789988864332   33344556899999999987665555544433 36888899987643211   111111 122


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      ++.|.+|.|.-
T Consensus        87 ~~id~vi~~ag   97 (256)
T PRK06124         87 GRLDILVNNVG   97 (256)
T ss_pred             CCCCEEEECCC
Confidence            46788887754

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=86.16  E-value=7.1  Score=36.00  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.+++++... .+.+.+.. ..++.++.+|+.+...- .....+.+   ..
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   82 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAVE---AF   82 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH---Hc
Confidence            46788888875443   4555566789999999986533 33333322 23677888998774321 11111111   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.+|.|.
T Consensus        83 ~~id~lv~nA   92 (260)
T PRK12823         83 GRIDVLINNV   92 (260)
T ss_pred             CCCeEEEECC
Confidence            5688998875

>PRK08589 short chain dehydrogenase; Validated

Probab=86.06  E-value=7  Score=36.63  Aligned_cols=82  Identities=20%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++. .+.+.+.+... .++..+.+|+.+..--. ....+.+   ..
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEA-VSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE---QF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH-HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH---Hc
Confidence            46788888876553   44556667999999999944 33333333322 36888889987643211 1111111   23


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|.-
T Consensus        81 g~id~li~~Ag   91 (272)
T PRK08589         81 GRVDVLFNNAG   91 (272)
T ss_pred             CCcCEEEECCC
Confidence            56789998753

>PRK07677 short chain dehydrogenase; Provisional

Probab=86.02  E-value=6.3  Score=36.28  Aligned_cols=81  Identities=14%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      ++++|=.|++.|.   ++..+++.|.+|++++.++...+.+.+.+... +++.++.+|..+...- .......+   ..+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~   77 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE---KFG   77 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---HhC
Confidence            3578878876543   44455566889999999987666665554432 3788889998764321 11111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        78 ~id~lI~~a   86 (252)
T PRK07677         78 RIDALINNA   86 (252)
T ss_pred             CccEEEECC
Confidence            578888774

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=85.96  E-value=5.5  Score=39.37  Aligned_cols=46  Identities=28%  Similarity=0.468  Sum_probs=38.6

Q ss_pred             hcCCCCCEEEEEcCc-ccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHH
Q 017450          137 AAVQEGDIVLEIGPG-TGSLTNVLLN-AGATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       137 l~~~~~~~VLEIG~G-~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ....+|++|+=+|+| .|.++..+|+ .+++|+++|++++-.+.|++.
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence            566789999988877 5567888888 489999999999999988876

>PRK06139 short chain dehydrogenase; Provisional

Probab=85.92  E-value=6  Score=38.74  Aligned_cols=84  Identities=15%  Similarity=0.253  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+...+ ++.++..|+.+..--+...+.+.  ...+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA--SFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HhcC
Confidence            46788888875443   445566679999999999887776666554433 67778888876432111111111  1225


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|.-
T Consensus        84 ~iD~lVnnAG   93 (330)
T PRK06139         84 RIDVWVNNVG   93 (330)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PRK07478 short chain dehydrogenase; Provisional

Probab=85.80  E-value=7.4  Score=35.79  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.++.-.+.+.+.+... +++.++.+|+.+.+--.. ...+.+   ..
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE---RF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---hc
Confidence            45688888876443   44555667899999999987766665555433 367888899876542211 111111   22


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|.-
T Consensus        82 ~~id~li~~ag   92 (254)
T PRK07478         82 GGLDIAFNNAG   92 (254)
T ss_pred             CCCCEEEECCC
Confidence            46788887753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.61  E-value=7.6  Score=35.37  Aligned_cols=84  Identities=14%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcc--cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhccCC
Q 017450          141 EGDIVLEIGPGT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~--G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~~  216 (371)
                      .+.+||=+|++.  |. ++..|+++|.+|++++.++.-.+.+...+....++.++.+|+.+...-.... ....   ..+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~   80 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALE---RFG   80 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---HhC
Confidence            356788888643  33 4455566688999999998766655555433236788999988754321111 1111   224


Q ss_pred             CeeEEEecCCC
Q 017450          217 GFAKVVANIPF  227 (371)
Q Consensus       217 ~~d~VVaNlPy  227 (371)
                      ..|.||.|..+
T Consensus        81 ~~d~vi~~ag~   91 (251)
T PRK07231         81 SVDILVNNAGT   91 (251)
T ss_pred             CCCEEEECCCC
Confidence            67889887543

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=85.60  E-value=1.6  Score=41.09  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             EEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      |..-||+-.++..+.+...+.+.+|+.+.-.+.+++++....++++++.|..+.-...     +   .+.+.--+|+-++
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~al-----l---PP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKAL-----L---PPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH---------S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhh-----C---CCCCCCeEEEECC
Confidence            7899999999999998888999999999999999999987679999999998753221     1   2334566888899


Q ss_pred             CCcccHH
Q 017450          226 PFNISTD  232 (371)
Q Consensus       226 Py~iss~  232 (371)
                      ||...++
T Consensus       134 pYE~~~d  140 (245)
T PF04378_consen  134 PYEQKDD  140 (245)
T ss_dssp             ---STTH
T ss_pred             CCCCchH
Confidence            9988764

; PDB: 2OO3_A.

>PRK07890 short chain dehydrogenase; Provisional

Probab=85.58  E-value=7.3  Score=35.75  Aligned_cols=82  Identities=18%  Similarity=0.251  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|+++|.+|+.+++++.-.+.+.+.+... .++..+..|+.+...-.... ...+   ..
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   80 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE---RF   80 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH---Hc
Confidence            46788888865443   34455567899999999987666665554432 36788899987643211111 1111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.+|.|.
T Consensus        81 g~~d~vi~~a   90 (258)
T PRK07890         81 GRVDALVNNA   90 (258)
T ss_pred             CCccEEEECC
Confidence            4578888775

>PRK08226 short chain dehydrogenase; Provisional

Probab=85.37  E-value=7.6  Score=35.88  Aligned_cols=83  Identities=12%  Similarity=0.110  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|+. |.++..    +++.|.+|+.++.++...+.+.+......++.++.+|+.+..--+...+.+.  ...+
T Consensus         5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~   81 (263)
T PRK08226          5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAK--EKEG   81 (263)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888875 444444    4456889999999886544443332222367788899876432211111111  1234


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|.-
T Consensus        82 ~id~vi~~ag   91 (263)
T PRK08226         82 RIDILVNNAG   91 (263)
T ss_pred             CCCEEEECCC
Confidence            5788887643

>PRK07035 short chain dehydrogenase; Provisional

Probab=85.34  E-value=7.6  Score=35.60  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.++.++.-.+.+.+.+... .++.++..|..+..--+ ......+   ..
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE---RH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence            45788889977654   44555666899999999977666655555433 35777888887654211 1111111   12


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|..
T Consensus        84 ~~id~li~~ag   94 (252)
T PRK07035         84 GRLDILVNNAA   94 (252)
T ss_pred             CCCCEEEECCC
Confidence            45788887654

>PRK05872 short chain dehydrogenase; Provisional

Probab=85.33  E-value=7.9  Score=36.91  Aligned_cols=83  Identities=19%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++-++.+.+.+.....+..+.+|+.+..--. ....+.+   ..+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVE---RFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            56789988865543   3445555689999999998877666555543224555668887643211 1111111   225


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|.-
T Consensus        85 ~id~vI~nAG   94 (296)
T PRK05872         85 GIDVVVANAG   94 (296)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PRK05876 short chain dehydrogenase; Provisional

Probab=85.09  E-value=8.4  Score=36.34  Aligned_cols=84  Identities=13%  Similarity=0.061  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.++.-.+.+.+.+...+ ++.++.+|+.+..--....+...  ...+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888876543   344455568899999999876665555544332 57788899877542111111111  1224


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|--
T Consensus        83 ~id~li~nAg   92 (275)
T PRK05876         83 HVDVVFSNAG   92 (275)
T ss_pred             CCCEEEECCC
Confidence            6788888753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.94  E-value=8.8  Score=34.92  Aligned_cols=82  Identities=11%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      +++++|=+|++ |.++..    +++.|.+|+.++.++.-.+.+.+.+... .++.++..|..+...- +....+.+   .
T Consensus         4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   79 (253)
T PRK08217          4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE---D   79 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            46789988863 333333    4456889999999987666555554432 3678888998764321 11111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.||.|.-
T Consensus        80 ~~~id~vi~~ag   91 (253)
T PRK08217         80 FGQLNGLINNAG   91 (253)
T ss_pred             cCCCCEEEECCC
Confidence            245788888754

>PRK07109 short chain dehydrogenase; Provisional

Probab=84.72  E-value=7.9  Score=37.83  Aligned_cols=84  Identities=12%  Similarity=0.148  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|+.+...-+...+...  ...+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHCC
Confidence            45688888865443   33445567899999999988776666555433 378888999877542211111111  1235


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|.-
T Consensus        85 ~iD~lInnAg   94 (334)
T PRK07109         85 PIDTWVNNAM   94 (334)
T ss_pred             CCCEEEECCC
Confidence            6888887754

>PRK06138 short chain dehydrogenase; Provisional

Probab=84.66  E-value=8.9  Score=34.99  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      +++++|=.|+..|.   ++..|++.|++|+++..+.+......+......++.++.+|+.+...-. ....+.+   ..+
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~---~~~   80 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAA---RWG   80 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---HcC
Confidence            45688889885332   3344555688999999987766555544432236788999987653211 1111111   124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.||.|..
T Consensus        81 ~id~vi~~ag   90 (252)
T PRK06138         81 RLDVLVNNAG   90 (252)
T ss_pred             CCCEEEECCC
Confidence            6788887754

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.65  E-value=6.7  Score=36.47  Aligned_cols=83  Identities=12%  Similarity=0.059  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|=.|.+    .|. ++..+++.|++|+.++++++..+.+.+.....+...++.+|+.+..--+...+.+.  ...
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIA--EEW   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHH--HHc
Confidence            46789999975    443 45556667899999998865433333322222345567788876542221111111  122


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|.
T Consensus        87 g~ld~lv~nA   96 (258)
T PRK07533         87 GRLDFLLHSI   96 (258)
T ss_pred             CCCCEEEEcC
Confidence            5689999885

>PRK08643 acetoin reductase; Validated

Probab=84.48  E-value=8.4  Score=35.43  Aligned_cols=84  Identities=13%  Similarity=0.200  Sum_probs=50.3

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ++++|=+|+..|.   ++..+++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..--....+...  ...+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVV--DTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcCC
Confidence            4577877755442   33445556889999999987766665555432 367788899877542111111111  12246


Q ss_pred             eeEEEecCCC
Q 017450          218 FAKVVANIPF  227 (371)
Q Consensus       218 ~d~VVaNlPy  227 (371)
                      .|.+|.|..+
T Consensus        80 id~vi~~ag~   89 (256)
T PRK08643         80 LNVVVNNAGV   89 (256)
T ss_pred             CCEEEECCCC
Confidence            7888887643

>PRK05854 short chain dehydrogenase; Provisional

Probab=84.38  E-value=9.1  Score=36.92  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.+.++++-.+.+.+.+.. .  .++.++..|..+..--....+.+.  ..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~--~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR--AE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--Hh
Confidence            46788888876554   4455666789999999997766555444432 1  267888999887543221111111  12


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|.
T Consensus        91 ~~~iD~li~nA  101 (313)
T PRK05854         91 GRPIHLLINNA  101 (313)
T ss_pred             CCCccEEEECC
Confidence            35689998774

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=84.36  E-value=8.7  Score=35.90  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.+++..+.+.+.+... .++.++.+|..+...-.. ...+.+   ..
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~~   85 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE---DF   85 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            46788888876443   44555566899999999987666555555433 367888999876542211 111111   12


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|..
T Consensus        86 g~id~li~~ag   96 (278)
T PRK08277         86 GPCDILINGAG   96 (278)
T ss_pred             CCCCEEEECCC
Confidence            56788988743

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=84.31  E-value=9.1  Score=35.54  Aligned_cols=85  Identities=21%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.+++-.+.+.+.+...+ ++.++.+|..+..--....+...  ...+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence            56789988877554   455666778999999999877666665554433 68888999876542211111111  1225


Q ss_pred             CeeEEEecCCC
Q 017450          217 GFAKVVANIPF  227 (371)
Q Consensus       217 ~~d~VVaNlPy  227 (371)
                      ..|.+|.|.-+
T Consensus        87 ~id~li~~ag~   97 (265)
T PRK07097         87 VIDILVNNAGI   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            67899887643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=84.24  E-value=9.4  Score=35.13  Aligned_cols=84  Identities=19%  Similarity=0.202  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+++||=.|. +|.++..+    ++.|.+|+.++.++...+.+.+.+... .++.++.+|+.+...-....+-..  ...
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence            4678998885 45545444    446889999999987766665555443 257788899877442211111111  123


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      +..|.+|.|.-.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            567888877543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.23  E-value=9.7  Score=34.45  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      ++++||=.|++ |.++.    .+++.|.+|+++..+++-.+.+.+.....+++.++.+|..+.+
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~   66 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTE   66 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence            46789999986 33333    4445688999999998877666554444457888899988644

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.17  E-value=7.1  Score=36.77  Aligned_cols=82  Identities=21%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh-cc
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KS  214 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~-~~  214 (371)
                      +++++|=.|++    .|. ++..|++.|++|+.++.++...+.+++.....+....+.+|+.+..--+   .+++.. ..
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~---~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVD---AVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHH---HHHHHHHHH
Confidence            46789999975    444 5666777799999998876544333333222233346778887754221   121111 12


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|.
T Consensus        83 ~g~iD~lVnnA   93 (271)
T PRK06505         83 WGKLDFVVHAI   93 (271)
T ss_pred             hCCCCEEEECC
Confidence            35789999874

>PRK09242 tropinone reductase; Provisional

Probab=84.04  E-value=9  Score=35.29  Aligned_cols=85  Identities=24%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++-.+.+.+.+...   .++.++.+|+.+...-....+...  ..
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~   85 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--DH   85 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence            46789989885443   34445556899999999987776665555332   367888899876432111111111  12


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|.+|.|.-+
T Consensus        86 ~g~id~li~~ag~   98 (257)
T PRK09242         86 WDGLHILVNNAGG   98 (257)
T ss_pred             cCCCCEEEECCCC
Confidence            3567888877644

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=84.01  E-value=7.7  Score=35.92  Aligned_cols=72  Identities=24%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             EEEEEcCcc-c-HHHHHHHHhCCeEEEEeCCHHHHHHHHH-HhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          144 IVLEIGPGT-G-SLTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       144 ~VLEIG~G~-G-~lt~~La~~~~~V~aIE~d~~~i~~a~~-~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      +++=||||. | .++..|.+.|..|++||.|++.++.... ..    ...++++|+.+.+.-       ++ .....+|.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L-------~~-agi~~aD~   69 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVL-------EE-AGIDDADA   69 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHH-------Hh-cCCCcCCE
Confidence            466788873 3 3555666678899999999998877333 32    578999999876431       11 23456777


Q ss_pred             EEecCCC
Q 017450          221 VVANIPF  227 (371)
Q Consensus       221 VVaNlPy  227 (371)
                      +++-..-
T Consensus        70 vva~t~~   76 (225)
T COG0569          70 VVAATGN   76 (225)
T ss_pred             EEEeeCC
Confidence            7764443

>PRK08267 short chain dehydrogenase; Provisional

Probab=83.90  E-value=9.7  Score=35.15  Aligned_cols=81  Identities=9%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~~  218 (371)
                      +++|=+|++.|.   ++..+++.|.+|+.++.+++-.+.+..... ..++.++.+|+.+...-. ......+  ...++.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA--ATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH--HcCCCC
Confidence            367778865432   445555668999999999887776655543 237889999997754211 1111111  013567


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |.||.|.-
T Consensus        79 d~vi~~ag   86 (260)
T PRK08267         79 DVLFNNAG   86 (260)
T ss_pred             CEEEECCC
Confidence            88987754

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=83.64  E-value=9.7  Score=34.96  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcc--cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~--G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|+..  |. ++..|++.|.+|+.++.++...+.+.+.+...+ ++.++.+|+.+...-+...+-..  ...+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   83 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERFG   83 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            467888777642  21 344555668899999999876665555554333 67788999887543211111111  1124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|.-
T Consensus        84 ~~d~vi~~ag   93 (262)
T PRK13394         84 SVDILVSNAG   93 (262)
T ss_pred             CCCEEEECCc
Confidence            5788887653

>PRK08862 short chain dehydrogenase; Provisional

Probab=83.47  E-value=9.3  Score=35.05  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..+++.|.+|+.+..+++.++.+.+.+... ..+..+..|..+..-- .......+   ..
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   80 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ---QF   80 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            46789999988876   56667777999999999988777665555433 2566667777653311 11111111   12


Q ss_pred             C-CeeEEEecC
Q 017450          216 S-GFAKVVANI  225 (371)
Q Consensus       216 ~-~~d~VVaNl  225 (371)
                      + ..|++|.|.
T Consensus        81 g~~iD~li~na   91 (227)
T PRK08862         81 NRAPDVLVNNW   91 (227)
T ss_pred             CCCCCEEEECC
Confidence            4 689999885

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=83.46  E-value=12  Score=34.11  Aligned_cols=83  Identities=12%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccHHH----HHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      +++++|=.|++ |.++    ..|++.|.+|+.++.+......+...+... .++.++.+|+.+...-+. ...+.+   .
T Consensus         2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~   77 (250)
T TIGR03206         2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ---A   77 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            35678888864 4444    444556889999999987766665554432 378899999876542211 111111   1


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|.+|.|..+
T Consensus        78 ~~~~d~vi~~ag~   90 (250)
T TIGR03206        78 LGPVDVLVNNAGW   90 (250)
T ss_pred             cCCCCEEEECCCC
Confidence            2457888877654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07814 short chain dehydrogenase; Provisional

Probab=83.45  E-value=10  Score=35.16  Aligned_cols=82  Identities=18%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      +++++|=.|.+ |.++..    |+++|.+|+.++.+++-.+.+.+.+... .++.++.+|..+...-....+...  ...
T Consensus         9 ~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (263)
T PRK07814          9 DDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAV--EAF   85 (263)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            46789988854 444444    4456889999999987666555544332 367888899877542211111111  112


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.||.|.
T Consensus        86 ~~id~vi~~A   95 (263)
T PRK07814         86 GRLDIVVNNV   95 (263)
T ss_pred             CCCCEEEECC
Confidence            4678888764

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=83.39  E-value=1.2  Score=42.68  Aligned_cols=51  Identities=18%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHh--c-CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHH
Q 017450          127 SEINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG  177 (371)
Q Consensus       127 ~~v~~~i~~~l--~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~  177 (371)
                      -..+..+.+.+  + ...+++|||+|||.|.........+ ..+...|.+.+.++
T Consensus        99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            44555666443  2 3478999999999999988888777 68999999888774

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=83.36  E-value=11  Score=34.80  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+....+.+...+... .++.++.+|+.+...- +....+.+   ..
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS---KL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence            46899999966543   34445566889999999887776655544332 3677888998875421 11111111   22


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|.-
T Consensus        87 ~~~d~li~~ag   97 (255)
T PRK06113         87 GKVDILVNNAG   97 (255)
T ss_pred             CCCCEEEECCC
Confidence            46788887743

>PRK06949 short chain dehydrogenase; Provisional

Probab=83.29  E-value=11  Score=34.47  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchh-hhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI-RSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~-~~~~~~l~~~~~~  214 (371)
                      .+++||=.|. +|.++..++    +.|.+|++++.+++..+.+...+... .+++++.+|+.+..- ......+.+   .
T Consensus         8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   83 (258)
T PRK06949          8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET---E   83 (258)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---h
Confidence            5678998884 444444444    45889999999988776666555332 368889999876432 111111111   2


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.+|.|..
T Consensus        84 ~~~~d~li~~ag   95 (258)
T PRK06949         84 AGTIDILVNNSG   95 (258)
T ss_pred             cCCCCEEEECCC
Confidence            246788887754

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=83.29  E-value=4.7  Score=38.10  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=63.4

Q ss_pred             EEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      |.--||+--++..+.....++.++|+.+.=...++.+|....++++..+|....--..    +    .+.+.--.|+-++
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~----L----PP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAH----L----PPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhh----C----CCCCcceEEEeCC
Confidence            8899999999999998888999999999999999999987679999999976532211    1    2334466788899


Q ss_pred             CCcccHH
Q 017450          226 PFNISTD  232 (371)
Q Consensus       226 Py~iss~  232 (371)
                      ||....+
T Consensus       165 PfE~~~e  171 (279)
T COG2961         165 PFELKDE  171 (279)
T ss_pred             CcccccH
Confidence            9976653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=83.20  E-value=8.4  Score=35.63  Aligned_cols=80  Identities=14%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhh-ccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR-KSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.++.  +.+.+..... .++.++.+|+.+..--.   .+++.. ...
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~~~~   81 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDID---SIVSQAVEVM   81 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHHHHHHc
Confidence            46889999976654   45556667899999887642  2222222222 36888899987754221   111111 123


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|.
T Consensus        82 g~iD~lv~~a   91 (251)
T PRK12481         82 GHIDILINNA   91 (251)
T ss_pred             CCCCEEEECC
Confidence            5689999875

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.07  E-value=8.7  Score=35.83  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|=.|+    |.|. ++..+++.|++|+.+..++...+.+++.....+....+.+|+.+.+--+...+...  ...
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLG--KHW   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH--HHh
Confidence            4678999996    4444 45555667899988776654444444443333444567888877543221111111  123


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|.
T Consensus        83 g~iD~lVnnA   92 (261)
T PRK08690         83 DGLDGLVHSI   92 (261)
T ss_pred             CCCcEEEECC
Confidence            5689999885

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.06  E-value=9.4  Score=36.09  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++.+|=.|+    |.|. ++..+++.|++|+.++++++..+.+.+.....+.-..+.+|+.+..--+...+.+.  ...
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~--~~~   81 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK--KDL   81 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH--HHc
Confidence            4678999997    4554 45566677999999998864333333322222211567888877543221111111  123


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|--
T Consensus        82 g~iDilVnnAG   92 (274)
T PRK08415         82 GKIDFIVHSVA   92 (274)
T ss_pred             CCCCEEEECCc
Confidence            56899998853

>PRK07062 short chain dehydrogenase; Provisional

Probab=82.83  E-value=10  Score=35.08  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEcccccchhhhhhhhHHHhh-c
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERR-K  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~~~~~~~~~~l~~~~-~  213 (371)
                      .++++|=.|++.|.   ++..+++.|++|+.++++++-.+.+.+.+.. .  .++..+.+|+.+.+--.   .+.+.. .
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~---~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVA---AFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHH---HHHHHHHH
Confidence            46789999976553   4455556689999999998766655444432 1  25777888887754211   111111 1


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+..|.+|.|.-
T Consensus        84 ~~g~id~li~~Ag   96 (265)
T PRK07062         84 RFGGVDMLVNNAG   96 (265)
T ss_pred             hcCCCCEEEECCC
Confidence            2256788888753

>PRK08265 short chain dehydrogenase; Provisional

Probab=82.81  E-value=10  Score=35.20  Aligned_cols=81  Identities=15%  Similarity=0.179  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..+++.|.+|+.++++++-.+.+.+...  .++.++.+|+.+..-- .......+   ..+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~---~~g   79 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVA---RFG   79 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHH---HhC
Confidence            46788988865432   445555668999999999775554444332  3678889999875321 11111111   224


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|.-
T Consensus        80 ~id~lv~~ag   89 (261)
T PRK08265         80 RVDILVNLAC   89 (261)
T ss_pred             CCCEEEECCC
Confidence            6788888753

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.74  E-value=9.8  Score=35.71  Aligned_cols=84  Identities=20%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|=.|.|    .|. ++..+++.|++|+.++.+....+.+.+.....+....+.+|+.+.+--+...+...  ...
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG--KVW   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH--hhc
Confidence            46789999975    443 56777778999998888754333343332223456677888876442221111111  123


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|.-
T Consensus        83 g~iD~linnAg   93 (262)
T PRK07984         83 PKFDGFVHSIG   93 (262)
T ss_pred             CCCCEEEECCc
Confidence            56899998864

>PRK07791 short chain dehydrogenase; Provisional

Probab=82.72  E-value=11  Score=35.81  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH---------HHHHHHHHHhccC-CCeEEEEcccccchhhhh-hh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-ML  206 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~---------~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~  206 (371)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+.         +-.+.+.+.+... .++.++..|+.+..--.. ..
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~   84 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD   84 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence            56789999987664   4455666789999888764         3344333333322 367788889877542211 11


Q ss_pred             hHHHhhccCCCeeEEEecC
Q 017450          207 SLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNl  225 (371)
                      ...+   ..+..|.+|.|.
T Consensus        85 ~~~~---~~g~id~lv~nA  100 (286)
T PRK07791         85 AAVE---TFGGLDVLVNNA  100 (286)
T ss_pred             HHHH---hcCCCCEEEECC
Confidence            1111   235688999874

>PRK12939 short chain dehydrogenase; Provisional

Probab=82.63  E-value=13  Score=33.82  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ++++||=.|+ +|.++..+    ++.|.+|++++.+++-.....+.+... .++.++.+|+.+...-....+...  ...
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAA--AAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4678887776 34445444    445889999999887666555544332 378899999986542111111111  112


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.+|.|.
T Consensus        83 ~~id~vi~~a   92 (250)
T PRK12939         83 GGLDGLVNNA   92 (250)
T ss_pred             CCCCEEEECC
Confidence            4678888764

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.63  E-value=9.6  Score=35.90  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|=.|.    |.|. ++..+++.|++|+.+..++...+.+.+.....+....+.+|+.+..--+...+.+.  ...
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   86 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE--KKW   86 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH--Hhc
Confidence            4678999997    4555 45666677999988877644333333333223445567888876432221111111  123


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|.
T Consensus        87 g~iD~lv~nA   96 (272)
T PRK08159         87 GKLDFVVHAI   96 (272)
T ss_pred             CCCcEEEECC
Confidence            5689999885

>PLN02780 ketoreductase/ oxidoreductase

Probab=82.48  E-value=9.5  Score=37.09  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEccccc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVK  198 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~  198 (371)
                      .|+.+|=.|++.|.   ++..++++|.+|+.++++++-.+.+.+.+.. .  .++..+..|+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~  115 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG  115 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence            46789999976664   5666677799999999999877766655542 2  256667778763

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=82.45  E-value=11  Score=34.40  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhh-
Q 017450          140 QEGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-  212 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~-  212 (371)
                      .++++||=.|+ +|.++..+    ++.|.+|++++.+..-.+.+.+.+...  .++.++.+|+...+..+. .++.+.+ 
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~   87 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNY-QQLADTIE   87 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHH-HHHHHHHH
Confidence            36788999995 45555444    445889999999987665555544432  257788888864332211 1111111 


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                      ...+..|.||.|.
T Consensus        88 ~~~~~id~vi~~A  100 (247)
T PRK08945         88 EQFGRLDGVLHNA  100 (247)
T ss_pred             HHhCCCCEEEECC
Confidence            1224678888764

>PRK08303 short chain dehydrogenase; Provisional

Probab=82.42  E-value=9.3  Score=36.85  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH----------HHHHHHHHHhccCC-CeEEEEcccccchhhhhhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ----------HMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~----------~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~  206 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++.          +-++.+.+.+...+ ++.++.+|+.+..--+...
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            56789999986654   4455556689999998873          23333333333333 5778889987754222111


Q ss_pred             hHHHhhccCCCeeEEEecC
Q 017450          207 SLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNl  225 (371)
                      +...  ...+..|++|.|.
T Consensus        87 ~~~~--~~~g~iDilVnnA  103 (305)
T PRK08303         87 ERID--REQGRLDILVNDI  103 (305)
T ss_pred             HHHH--HHcCCccEEEECC
Confidence            1111  1225689999886

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.39  E-value=9.2  Score=35.43  Aligned_cols=82  Identities=12%  Similarity=0.186  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++++|=.|.+    .|. ++..|++.|.+|+.+..+++..+.+++...  .++..+..|+.+..--+...+.+.  ...
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   81 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIK--ERV   81 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHH--HHh
Confidence            46789988865    444 556666679999999888654444333321  357788899876432211111111  123


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|.-
T Consensus        82 g~iD~lv~nAg   92 (252)
T PRK06079         82 GKIDGIVHAIA   92 (252)
T ss_pred             CCCCEEEEccc
Confidence            56899998853

>PRK05650 short chain dehydrogenase; Provisional

Probab=82.36  E-value=11  Score=35.00  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=47.3

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      +||=.|+..|.   ++..|++.|.+|+.++.+..-.+.+...+... .++.++.+|+.+...-....+.+.  ...+..|
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~~id   79 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE--EKWGGID   79 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcCCCC
Confidence            57767754332   34445556889999999877665554444332 367888999876442111111111  1224678


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      .+|.|.-
T Consensus        80 ~lI~~ag   86 (270)
T PRK05650         80 VIVNNAG   86 (270)
T ss_pred             EEEECCC
Confidence            8888743

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=82.35  E-value=9.5  Score=35.26  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccH--HHHHHHH--h--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLLN--A--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~--lt~~La~--~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      .|.+.++|.+++.-...+.++|+.|+-|.  .|..|+.  +  |.++++|-.|+.-....++.+...+   -++++.||.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            56788888888888888999999766443  4555543  2  7899999999888777777765443   358888885


Q ss_pred             cc
Q 017450          197 VK  198 (371)
Q Consensus       197 ~~  198 (371)
                      .+
T Consensus       106 ~e  107 (218)
T PF07279_consen  106 PE  107 (218)
T ss_pred             HH
Confidence            43

The function of this family is unknown.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=81.94  E-value=11  Score=35.00  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      +++++|=.|++.|.   ++..|++.|.+|+.++.+.+.++.+.+..  ..++..+.+|+.+..-.. ....+.+   ..+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~---~~g   78 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCVA---AFG   78 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHHH---HhC
Confidence            46788888875442   44555567899999999887665554432  136778888987643211 1111111   125


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        79 ~id~li~~A   87 (262)
T TIGR03325        79 KIDCLIPNA   87 (262)
T ss_pred             CCCEEEECC
Confidence            678888874

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=81.92  E-value=13  Score=34.17  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .++++|=.|.+.|.   ++..|++.|.+|+.++.++.-...+.+.+... .++..+.+|+.+.+--. ....+.+   ..
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~   84 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK---DI   84 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---hc
Confidence            46789988865443   34455556889999999977666555554432 35677888887654211 1111111   23


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|.-
T Consensus        85 ~~id~vi~~ag   95 (254)
T PRK08085         85 GPIDVLINNAG   95 (254)
T ss_pred             CCCCEEEECCC
Confidence            56899998764

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=81.88  E-value=3.2  Score=39.07  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=55.7

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .+.++++.+||=+|+++|..-...+.. |  .-|+|||.++..=..+..-....+|+--+.-|+..-.---         
T Consensus       151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR---------  221 (317)
T KOG1596|consen  151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR---------  221 (317)
T ss_pred             ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------
Confidence            445779999999999999988888875 3  3699999986654444433333357766777775421000         


Q ss_pred             ccCCCeeEEEecCCCc
Q 017450          213 KSSSGFAKVVANIPFN  228 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy~  228 (371)
                      ..-+-.|+|+++++-.
T Consensus       222 mlVgmVDvIFaDvaqp  237 (317)
T KOG1596|consen  222 MLVGMVDVIFADVAQP  237 (317)
T ss_pred             eeeeeEEEEeccCCCc
Confidence            1124578888887643

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.73  E-value=12  Score=34.95  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++.+|=.|++    .|. ++..+++.|++|+.++.++...+.+++.....+...++..|+.+..--+...+.+.  ...
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence            46788888985    443 45667778999998888754333333332222333456788876532221111111  123


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|.-
T Consensus        85 g~iDilVnnag   95 (260)
T PRK06603         85 GSFDFLLHGMA   95 (260)
T ss_pred             CCccEEEEccc
Confidence            56899998864

>PRK07326 short chain dehydrogenase; Provisional

Probab=81.71  E-value=15  Score=33.16  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=40.8

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      .+.+||=+|. +|.++..++    +.|.+|+++++++.-...+.+.+.....+.++.+|+.+..
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~   67 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEA   67 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHH
Confidence            3578998884 555555554    4588999999998766655555433246888899987643

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.70  E-value=1.5  Score=43.83  Aligned_cols=69  Identities=17%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~  199 (371)
                      =.....+.+.+|..|+|+-|..|.-|..++..   -.++.|.|.|.+..+..+..+...+  .++..++|++..
T Consensus       203 clpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t  276 (413)
T KOG2360|consen  203 CLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT  276 (413)
T ss_pred             cchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence            34555667778899999999999999999874   4589999999999999888876544  677889999885

>PRK06500 short chain dehydrogenase; Provisional

Probab=81.43  E-value=13  Score=33.85  Aligned_cols=83  Identities=17%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ++++||=.|++.|.   ++..+++.|.+|++++.+++....+.+.+.  .++.++++|..+........+.+.  ...+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~   80 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALA--EAFGR   80 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            45678888875432   344455568899999998776555544432  367788888876542211111111  12246


Q ss_pred             eeEEEecCCC
Q 017450          218 FAKVVANIPF  227 (371)
Q Consensus       218 ~d~VVaNlPy  227 (371)
                      .|.+|.|..+
T Consensus        81 id~vi~~ag~   90 (249)
T PRK06500         81 LDAVFINAGV   90 (249)
T ss_pred             CCEEEECCCC
Confidence            7888877543

>PRK06181 short chain dehydrogenase; Provisional

Probab=81.27  E-value=14  Score=34.01  Aligned_cols=80  Identities=15%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             CEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+||=.|+. |.++..    +++.|.+|++++.++.-.+.+.+.+... .++.++.+|..+..--....+...  ...+.
T Consensus         2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~   78 (263)
T PRK06181          2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG   78 (263)
T ss_pred             CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            467777753 444444    4456889999999976655554444333 368888899877542111111110  11245


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|.||.|.
T Consensus        79 id~vi~~a   86 (263)
T PRK06181         79 IDILVNNA   86 (263)
T ss_pred             CCEEEECC
Confidence            78888764

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=81.25  E-value=4.9  Score=34.66  Aligned_cols=53  Identities=13%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       165 ~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +|+|+|+.+++++..++++...   .++++++.+-.+++..          .+.++.|.++-|+=|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~----------i~~~~v~~~iFNLGY   56 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY----------IPEGPVDAAIFNLGY   56 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh----------CccCCcCEEEEECCc
Confidence            6999999999999999999875   3799999888876531          122478999999765

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=81.25  E-value=14  Score=34.15  Aligned_cols=82  Identities=18%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++. .+.+.+.+... .++.++.+|+.+...-.... ...+   ..
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN-WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE---EF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence            56889999987654   44555667899999988843 33333333322 36888899988754321111 1111   22


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|.+|.|..
T Consensus        90 g~id~li~~ag  100 (258)
T PRK06935         90 GKIDILVNNAG  100 (258)
T ss_pred             CCCCEEEECCC
Confidence            46788887753

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=81.13  E-value=3  Score=35.52  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=25.5

Q ss_pred             EEcCccc--HHHHHHHH--h--CCeEEEEeCCHHHHHHHHHH
Q 017450          147 EIGPGTG--SLTNVLLN--A--GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       147 EIG~G~G--~lt~~La~--~--~~~V~aIE~d~~~i~~a~~~  182 (371)
                      |||+..|  ..+..++.  .  +.+|+++|.++..++.++.+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  76666542  2  46899999999999999988

; PDB: 2PY6_A.

>PRK06196 oxidoreductase; Provisional

Probab=81.00  E-value=13  Score=35.72  Aligned_cols=80  Identities=16%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++ |.++.    .|++.|.+|+++.++++..+.+.+.+.   ++.++.+|+.+..--....+.+.  ...+
T Consensus        25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---~v~~~~~Dl~d~~~v~~~~~~~~--~~~~   98 (315)
T PRK06196         25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVMLDLADLESVRAFAERFL--DSGR   98 (315)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---hCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence            46789988865 44444    444568899999999876655544432   47788899887542211111111  1235


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|..
T Consensus        99 ~iD~li~nAg  108 (315)
T PRK06196         99 RIDILINNAG  108 (315)
T ss_pred             CCCEEEECCC
Confidence            6899998764

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=80.99  E-value=14  Score=33.94  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++ |.++.    .|+++|.+|+.++.+....+.+.+...  .++.++.+|+.+..--....+...  ...+
T Consensus         5 ~~~~vlItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (257)
T PRK07067          5 QGKVALLTGAA-SGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAV--ERFG   79 (257)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            35688888854 44444    444568899999999887766555442  367888899876542211111111  1124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        80 ~id~li~~a   88 (257)
T PRK07067         80 GIDILFNNA   88 (257)
T ss_pred             CCCEEEECC
Confidence            578888764

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.93  E-value=4.7  Score=39.55  Aligned_cols=51  Identities=29%  Similarity=0.502  Sum_probs=42.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~  183 (371)
                      ........+.|.+||=+|+|. |-+|...|+. | .+|+.+|.++..++.|++ +
T Consensus       160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~  213 (354)
T KOG0024|consen  160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F  213 (354)
T ss_pred             hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h
Confidence            445566788999999999995 7777777775 5 489999999999999998 5

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=80.93  E-value=16  Score=37.02  Aligned_cols=70  Identities=20%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          125 LNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~--~~~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      .++.-+..+...+...  ...+|+=+|+|  .++..+++    .+.+|+.+|.|++.++.+++..   .++.++.||+.+
T Consensus       212 g~~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~  286 (453)
T PRK09496        212 GAREHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTD  286 (453)
T ss_pred             eCHHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCC
Confidence            3455556665555422  34678888884  44444443    4789999999999988887764   257789999976


Q ss_pred             c
Q 017450          199 C  199 (371)
Q Consensus       199 ~  199 (371)
                      .
T Consensus       287 ~  287 (453)
T PRK09496        287 Q  287 (453)
T ss_pred             H
Confidence            4

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=80.67  E-value=2.6  Score=39.26  Aligned_cols=56  Identities=13%  Similarity=0.164  Sum_probs=40.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ++..|.+.+......+++|+-||+|..+..+...+..|+.-|+++..+...+..+.
T Consensus         8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen    8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence            45667777665467899999999999999888788899999999999888775554

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=80.63  E-value=15  Score=33.74  Aligned_cols=83  Identities=14%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      .++++|=.|+ +|.++..++    +.|.+|+.++.+.+-.+.+...+... .++.++.+|+.+...- .....+.+   .
T Consensus        11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~---~   86 (259)
T PRK08213         11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE---R   86 (259)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            4678999984 455555544    45889999999987766666555433 3678889998875321 11111111   1


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|.||.|...
T Consensus        87 ~~~id~vi~~ag~   99 (259)
T PRK08213         87 FGHVDILVNNAGA   99 (259)
T ss_pred             hCCCCEEEECCCC
Confidence            2457888887543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.49  E-value=4.2  Score=43.38  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             CEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ++|+=+|+|  ..+..++    +.+.+++.+|.|++.++.+++.     ...++.||+.+.+.-+.        ..-++.
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~--------agi~~A  465 (601)
T PRK03659        401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRA--------AGAEKA  465 (601)
T ss_pred             CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHh--------cCCccC
Confidence            356656554  5444444    3478999999999999988753     57799999998653211        123456


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      +.+|...+
T Consensus       466 ~~vv~~~~  473 (601)
T PRK03659        466 EAIVITCN  473 (601)
T ss_pred             CEEEEEeC
Confidence            67776555

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=80.48  E-value=16  Score=35.10  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|+..|.   ++..|++.|.+|+.++.+..-.+.+.+.+.. ..++.++.+|..+..--....+.+.  ...+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~   82 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALGK   82 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhCC
Confidence            46788888865432   3445555688999999988766655554432 2368888899876542111111111  1124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        83 ~iD~li~nA   91 (322)
T PRK07453         83 PLDALVCNA   91 (322)
T ss_pred             CccEEEECC
Confidence            578998874

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.31  E-value=4.4  Score=40.74  Aligned_cols=51  Identities=20%  Similarity=0.224  Sum_probs=39.0

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      .+.+++.++++||-|.+|-.+...++.+..++|+|||+++.-...++-+.+
T Consensus        28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   28 MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            455678899999999877655555555556799999999998887765544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=80.26  E-value=17  Score=33.00  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      .+++||=.|++ |.++..    ++++|.+|+++..++.-...+...+... .++.++.+|..+..-- .......   ..
T Consensus         5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~---~~   80 (251)
T PRK12826          5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV---ED   80 (251)
T ss_pred             CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH---HH
Confidence            45688877754 555444    4556889999999966555444444332 3688899998764321 1111111   11


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|.||.|...
T Consensus        81 ~~~~d~vi~~ag~   93 (251)
T PRK12826         81 FGRLDILVANAGI   93 (251)
T ss_pred             hCCCCEEEECCCC
Confidence            2457888877543

>PRK07774 short chain dehydrogenase; Provisional

Probab=80.18  E-value=16  Score=33.27  Aligned_cols=83  Identities=14%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .++++|=.|+ +|.++..+    ++.|.+|+.++.++.-.+.+.+.+... +++..+.+|..+..--.... .+.+   .
T Consensus         5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~   80 (250)
T PRK07774          5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS---A   80 (250)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            4578888884 44544444    456889999999976655554444322 36778888987654211111 1111   1


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|.||.|..+
T Consensus        81 ~~~id~vi~~ag~   93 (250)
T PRK07774         81 FGGIDYLVNNAAI   93 (250)
T ss_pred             hCCCCEEEECCCC
Confidence            2457899987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
2h1r_A	299	Crystal Structure Of A Dimethyladenosine Transferas		7e-19
3fuu_A	271	T. Thermophilus 16s Rrna A1518 And A1519 Methyltran		2e-17
3fut_A	271	Apo-Form Of T. Thermophilus 16s Rrna A1518 And A151		5e-17
3uzu_A	279	The Structure Of The Ribosomal Rna Small Subunit Me		5e-17
1zq9_A	285	Crystal Structure Of Human Dimethyladenosine Transf		7e-17
3tqs_A	255	Structure Of The Dimethyladenosine Transferase (Ksg		6e-16
3grr_A	295	Crystal Structure Of The Complex Between S-Adenosyl		7e-16
3tpz_A	273	2.1 Angstrom Crystal Structure Of The L114p Mutant		6e-13
3fyd_A	263	Crystal Structure Of Dim1 From The Thermophilic Arc		9e-13
3fyc_A	265	Crystal Structure Of Dim1 From The Thermophilic Arc		1e-12
2erc_A	244	Crystal Structure Of Ermc' A Rrna-Methyl Transferas		2e-11
3ftc_A	249	Crystal Structure Of A. Aeolicus Ksga At 1.72-Angst		4e-11
3r9x_B	248	Crystal Structure Of Era In Complex With Mggdpnp, N		5e-11
1qyr_A	252	2.1 Angstrom Crystal Structure Of Ksga: A Universal		1e-10
1yub_A	245	Solution Structure Of An Rrna Methyltransferase (Er		1e-10

>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 17/195 (8%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
           GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ I+ D  M+  V
Sbjct: 21  GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 80
Query: 180 RER--FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           ++R  +   + L+V + D +K        ++F +      F    ANIP+ IS+ +I +L
Sbjct: 81  KKRCLYEGYNNLEVYEGDAIK--------TVFPK------FDVCTANIPYKISSPLIFKL 126
Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQP 297
           +    +F   VL+ Q+E A R++  ++  S Y  + I V  + +      V R++F P P
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERML-ANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPP 185
Query: 298 KVDAAVVTFKLKQAT 312
           KVD+ +V    K+++
Sbjct: 186 KVDSVIVKLIPKESS 200

>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 Length = 271

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
           +I+T ++ +LL  G  F+ +V L+Q+E A R+     +T  Y  + + V  ++  E  F 
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERMTA-RPKTPAYGVLTLRVAHHAVAERLFD 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAV 317
           +P   FFP PKV +++V      A D P +
Sbjct: 179 LPPGAFFPPPKVWSSLVRLTPTGALDDPGL 208

>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
           +I+T ++ +LL  G  F+ +V L+Q+E A R      +T  Y  + + V  ++  E  F 
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERXTA-RPKTPAYGVLTLRVAHHAVAERLFD 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAV 317
           +P   FFP PKV +++V      A D P +
Sbjct: 179 LPPGAFFPPPKVWSSLVRLTPTGALDDPGL 208

>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit Methyltransferase A From Burkholderia Pseudomallei Length = 279

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 21/215 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV----LLNAGATV 166
           +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT      L   G+ +
Sbjct: 12  QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPL 71
Query: 167 LAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
            A+E D+ ++G + +RF  + +L     L  DF               R       +++ 
Sbjct: 72  HAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI-----------ARPGDEPSLRIIG 120
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
           N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP   T  +  +++ + +    
Sbjct: 121 NLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVM 178
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV 317
           +    VP  +F P PKVD+A+V        + PAV
Sbjct: 179 DKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAV 213

>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 20/196 (10%)
Query: 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG 177
            +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V 
Sbjct: 5   GIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVA 64
Query: 178 LVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
            + +R        +L+VL  D +K  +                F   VAN+P+ IS+  +
Sbjct: 65  ELHKRVQGTPVASKLQVLVGDVLKTDL--------------PFFDTCVANLPYQISSPFV 110
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
            +LL     F   +L+ Q E ALRLV +P  +   Y  ++I     +  ++  KV + NF
Sbjct: 111 FKLLLHRPFFRCAILMFQREFALRLVAKPGDKL--YCRLSINTQLLARVDHLMKVGKNNF 168
Query: 294 FPQPKVDAAVVTFKLK 309
            P PKV+++VV  + K
Sbjct: 169 RPPPKVESSVVRIEPK 184

>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From Coxiella Burnetii Length = 255

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +
Sbjct: 4   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           V  +++++     + + Q D ++          F   K+     +VV N+P+NIST ++ 
Sbjct: 64  VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 114
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
            L        +    LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P
Sbjct: 115 HLFSQIHCIEDXHFXLQKE-VVRRITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTP 173
Query: 296 QPKVDAAVV 304
            P+V++A++
Sbjct: 174 PPRVESAII 182

>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. Length = 295

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ 
Sbjct: 24  PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +     +     + ++++  D +K  +            +   F KVVAN+P+ IS+ + 
Sbjct: 84  LEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPIT 131
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
            +L+  G  F   VL+ Q E A R+V  +  T +Y  +++ V   ++ E   KVP + F+
Sbjct: 132 FKLIKRG--FDLAVLMYQYEFAKRMVAAA-GTKDYGRLSVAVQSRADVEIVAKVPPSAFY 188
Query: 295 PQPKVDAAVVTFK 307
           P+PKV +A+V  K
Sbjct: 189 PKPKVYSAIVKIK 201

>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E. Coli Ksga Length = 273

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
           +G   RK  GQ+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE
Sbjct: 7   QGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIE 66
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
            D+ +   ++       +L + Q+D       +   +  E  +      +V  N P+NIS
Sbjct: 67  LDRDLAARLQTHPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNPPYNIS 119
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
           T ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP 
Sbjct: 120 TPLMFHLFSYTDAIADMHFMLQKEVVNRLVA-GPNSKAYGRLSVMAQYYCNVIPVLEVPP 178
Query: 291 TNFFPQPKVDAAVV 304
           + F P PKVD+AVV
Sbjct: 179 SAFTPPPKVDSAVV 192

>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +     
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+  
Sbjct: 61  KLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKR 108
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
           G  F   VL+ Q E A R+V  +  T +Y  +++ V   ++ E   KVP + F+P+PKV 
Sbjct: 109 G--FDLAVLMYQYEFAKRMVAAA-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVY 165
Query: 301 AAVVTFK 307
           +A+V  K
Sbjct: 166 SAIVKIK 172

>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +    
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+ 
Sbjct: 62  NKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIK 109
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
            G  F   VL+ Q E A R+V     T +Y  +++ V   ++ E   KVP + F+P+PKV
Sbjct: 110 RG--FDLAVLMYQYEFAKRMVAKE-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKV 166
Query: 300 DAAVVTFK 307
            +A+V  K
Sbjct: 167 YSAIVKIK 174

>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase Length = 244

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           D++     + E D + EIG G G  T  L+     V AIE D  +      +    D  +
Sbjct: 20  DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQ 79
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
           VL +D ++          F+  K+ S   K+  NIP+NISTD+I++++    I  E+ L+
Sbjct: 80  VLNKDILQ----------FKFPKNQS--YKIFGNIPYNISTDIIRKIV-FDSIADEIYLI 126
Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
           ++   A RL+         R + +F+    +      VPR  F P+PKV+++++    K+
Sbjct: 127 VEYGFAKRLLNTK------RSLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKK 180
Query: 311 A 311
           +
Sbjct: 181 S 181

>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution Length = 249

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 112/220 (50%), Gaps = 32/220 (14%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 6   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65
Query: 175 MVGLVRERFASI--DQLKVLQEDFVK---CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED  K   C +   +              KVV N+P+N+
Sbjct: 66  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 107
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
           ++ +I+  +   D     V ++Q+E A +L     + + +  +++FV  + +  Y   VP
Sbjct: 108 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL--QGKKDTGW--LSVFVRTFYDVNYVMTVP 163
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMV 327
              F P PKV +AV+  KL +   +P   + + K F + +
Sbjct: 164 PRFFVPPPKVQSAVI--KLVKNEKFPVKDLKNYKKFLTKI 201

>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp, Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga Length = 248

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 112/220 (50%), Gaps = 32/220 (14%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 5   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64
Query: 175 MVGLVRERFASI--DQLKVLQEDFVK---CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED  K   C +   +              KVV N+P+N+
Sbjct: 65  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 106
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
           ++ +I+  +   D     V ++Q+E A +L     + + +  +++FV  + +  Y   VP
Sbjct: 107 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL--QGKKDTGW--LSVFVRTFYDVNYVMTVP 162
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMV 327
              F P PKV +AV+  KL +   +P   + + K F + +
Sbjct: 163 PRFFVPPPKVQSAVI--KLVKNEKFPVKDLKNYKKFLTKI 200

>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 8/184 (4%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D       +   +  E  +      +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
            D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD
Sbjct: 114 TDAIADMHFMLQKEVVNRLVA-GPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 172
Query: 301 AAVV 304
           +AVV
Sbjct: 173 SAVV 176

>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure Length = 245

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H+  L 
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            E+     ++ ++ +D ++          F  ++      K+V NIP+++ST +IK+++ 
Sbjct: 68  SEKLKLNTRVTLIHQDILQFQ--------FPNKQR----YKIVGNIPYHLSTQIIKKVV- 114
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
                S++ L+++E    R ++       +R + + ++     +   K+P   F P+PKV
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDI------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKV 168
Query: 300 DAAVVTFKLKQATDYP 315
           ++ ++    +  TD P
Sbjct: 169 NSVLIKLT-RHTTDVP 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	9e-54
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	2e-53
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	7e-53
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	3e-52
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	5e-52
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	9e-52
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	1e-49
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	1e-47
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	6e-45
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	7e-44
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	9e-28
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	6e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	8e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	5e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	5e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	3e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	6e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	7e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	7e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	8e-05
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	1e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	3e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	3e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	5e-04
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	5e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	5e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	6e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	7e-04
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	9e-04

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score =  178 bits (454), Expect = 9e-54
 Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 22/222 (9%)

Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
           +S GR      GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ 
Sbjct: 10  HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVIT 69

Query: 169 IEKDQHMVGLVRERF--ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
           I+ D  M+  V++R      + L+V + D +K                   F    ANIP
Sbjct: 70  IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK--------------FDVCTANIP 115

Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYK 285
           + IS+ +I +L+    +F   VL+ Q+E A R++       S Y  + I V  + +    
Sbjct: 116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG--DSNYSRLTINVKLFCKVTKV 173

Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
             V R++F P PKVD+ +V    K++     +T+   + +++
Sbjct: 174 CNVNRSSFNPPPKVDSVIVKLIPKES---SFLTNFDEWDNLL 212

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295

 Score =  177 bits (451), Expect = 2e-53
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 19/226 (8%)

Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
           + +    S    P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L   
Sbjct: 12  SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN 71

Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
              V  IE D+ +     +     + ++++  D +K  +            +   F KVV
Sbjct: 72  AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVV 119

Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSE 281
           AN+P+ IS+ +  +L+  G  F   VL+ Q E A R+V      T +Y  +++ V   ++
Sbjct: 120 ANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAAAG--TKDYGRLSVAVQSRAD 175

Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
            E   KVP + F+P+PKV +A+V  K  +      + +   F   +
Sbjct: 176 VEIVAKVPPSAFYPKPKVYSAIVKIKPNK--GKYHIENENFFDDFL 219

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285

 Score =  175 bits (447), Expect = 7e-53
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 23/216 (10%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
              +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +
Sbjct: 3   NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62

Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
           V  + +R        +L+VL  D +K  +                F   VAN+P+ IS+ 
Sbjct: 63  VAELHKRVQGTPVASKLQVLVGDVLKTDLPF--------------FDTCVANLPYQISSP 108

Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
            + +LL     F   +L+ Q E ALRLV +P      Y  ++I     +  ++  KV + 
Sbjct: 109 FVFKLLLHRPFFRCAILMFQREFALRLVAKPG--DKLYCRLSINTQLLARVDHLMKVGKN 166

Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           NF P PKV+++VV  + K     P   + + +  +V
Sbjct: 167 NFRPPPKVESSVVRIEPKNP---PPPINFQEWDGLV 199

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244

 Score =  173 bits (440), Expect = 3e-52
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 21/213 (9%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  
Sbjct: 4   KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +      +    D  +VL +D ++                 +   K+  NIP+NISTD+I
Sbjct: 64  LCKTTENKLVDHDNFQVLNKDILQFKF------------PKNQSYKIFGNIPYNISTDII 111

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           ++++    I  E+ L+++   A RL+      +  R + +F+    +      VPR  F 
Sbjct: 112 RKIV-FDSIADEIYLIVEYGFAKRLL------NTKRSLALFLMAEVDISILSMVPREYFH 164

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           P+PKV+++++    K+     +    + +   V
Sbjct: 165 PKPKVNSSLIRLNRKK--SRISHKDKQKYNYFV 195

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245

 Score =  172 bits (438), Expect = 5e-52
 Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 21/213 (9%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L  E+     ++ ++ +D ++                +    K+V NIP+++ST +I
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQF------------PNKQRYKIVGNIPYHLSTQII 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           K+++      S++ L+++E    R          +R + + ++     +   K+P   F 
Sbjct: 111 KKVV-FESRASDIYLIVEEGFYKRT------LDIHRTLGLLLHTQVSIQQLLKLPAECFH 163

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           P+PKV++ ++                K +   V
Sbjct: 164 PKPKVNSVLIKLTRHTT--DVPDKYWKLYTYFV 194

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255

 Score =  171 bits (437), Expect = 9e-52
 Identities = 49/214 (22%), Positives = 102/214 (47%), Gaps = 13/214 (6%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ 
Sbjct: 3   MRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +V  +++++     + + Q D ++        S+   +       +VV N+P+NIST ++
Sbjct: 63  LVAFLQKKYNQQKNITIYQNDALQFDFS----SVKTDKP-----LRVVGNLPYNISTPLL 113

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
             L        ++  +LQ+E   R+  E    + +Y  +++   ++ +  Y F V    F
Sbjct: 114 FHLFSQIHCIEDMHFMLQKEVVRRITAEVG--SHDYGRLSVMAQYFCDNTYLFTVSPQAF 171

Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
            P P+V++A++    +         +      +V
Sbjct: 172 TPPPRVESAIIRLIPRHNFTPV-AKNLDQLSHVV 204

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Length = 279

 Score =  167 bits (425), Expect = 1e-49
 Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--- 160
              +   +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT  ++   
Sbjct: 5   MSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL 64

Query: 161 -NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
              G+ + A+E D+ ++G + +RF   + L++   D +     S      E         
Sbjct: 65  ATPGSPLHAVELDRDLIGRLEQRFG--ELLELHAGDALTFDFGSIARPGDEPS------L 116

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
           +++ N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP   T  +  +++ + +
Sbjct: 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQY 174

Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
               +    VP  +F P PKVD+A+V        + PAV        +V
Sbjct: 175 RYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAV-DPAVLGEVV 222

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Length = 252

 Score =  160 bits (408), Expect = 1e-47
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 11/208 (5%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQPL-------RVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
            D  +++  +LQ+E   RLV  P+  +  Y  +++   +Y       +VP + F P PKV
Sbjct: 114 TDAIADMHFMLQKEVVNRLVAGPN--SKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKV 171

Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           D+AVV         +P V   +    + 
Sbjct: 172 DSAVVRLVPHATMPHP-VKDVRVLSRIT 198

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Length = 249

 Score =  154 bits (391), Expect = 6e-45
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 21/214 (9%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQ 173
            +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      +  IE D+
Sbjct: 5   LKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR 64

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            MV  ++      ++L+V+ ED  K        SL +         KVV N+P+N+++ +
Sbjct: 65  EMVENLKSIGD--ERLEVINEDASKFPFC----SLGKE-------LKVVGNLPYNVASLI 111

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
           I+  +   D     V ++Q+E A +L        +   +++FV  + +  Y   VP   F
Sbjct: 112 IENTVYNKDCVPLAVFMVQKEVAEKLQG----KKDTGWLSVFVRTFYDVNYVMTVPPRFF 167

Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
            P PKV +AV+     +      V   K++   +
Sbjct: 168 VPPPKVQSAVIKLVKNEK---FPVKDLKNYKKFL 198

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271

 Score =  151 bits (385), Expect = 7e-44
 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 18/217 (8%)

Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
            +++AL  + G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL 
Sbjct: 8   QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLE 66

Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
           AGA V AIEKD  +  ++ E  + +  ++++ +D +          + +          +
Sbjct: 67  AGAEVTAIEKDLRLRPVLEETLSGLP-VRLVFQDALLYPWE----EVPQGS-------LL 114

Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           VAN+P++I+T ++ +LL  G   + +V L+Q+E A R+   P   T  Y  + + V  ++
Sbjct: 115 VANLPYHIATPLVTRLLKTGRF-ARLVFLVQKEVAERMTARPK--TPAYGVLTLRVAHHA 171

Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV 317
             E  F +P   FFP PKV +++V      A D P +
Sbjct: 172 VAERLFDLPPGAFFPPPKVWSSLVRLTPTGALDDPGL 208

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score =  110 bits (277), Expect = 9e-28
 Identities = 37/258 (14%), Positives = 76/258 (29%), Gaps = 48/258 (18%)

Query: 115 PRKSLGQHYMLNSEINDQ------LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TV 166
            +   G  Y+ N  + ++      L       E   VL++ PG G  + +  N       
Sbjct: 26  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS---LFERRKSSSGFA---- 219
             +EK   +   +  +F     L++L+ D       S+++    +F     SS       
Sbjct: 86  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 144

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 203

Query: 272 INIFVNFYSEPE---------------------YKFKVPRTNFFPQPKVDAAVVTFK-LK 309
            ++    +++ +                               +P      A+V    + 
Sbjct: 204 CSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPID 263

Query: 310 QATDYPAVTS-TKSFFSM 326
              D       T+    +
Sbjct: 264 FDFDVDNWDYVTRHLMIL 281

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           + +      +    VLE G GTG+LTN LL AG TV  IE  + M  + +E+     +  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFS 92

Query: 191 VLQEDF 196
           + + DF
Sbjct: 93  ITEGDF 98

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
            I + +     + +G ++ +IG GTG  +  L N G  V A+E    M       
Sbjct: 21  RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH 75

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
           ++        +  ++++ G G G     LL     +  I+ +   +  V+E+F S+
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSV 62

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKV 191
             A   + D+ +++G GTG +T  L      V AI+++   +        R    D + +
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86

Query: 192 LQEDF 196
           ++ D 
Sbjct: 87  MEGDA 91

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            +A     E  + LE+G GTG +   L+  G   +A++ D  M+ + R++ A +D
Sbjct: 31  ASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD 85

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           + L      Q G+ +L++G GTG LT  +  +GA VL  +    M+   R+ +  + 
Sbjct: 47  EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLH 103

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 94  ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
           A +   + +  +       R P   +      + E+   L  +  +     VLE G G G
Sbjct: 3   AMNHSRESYDRLARELGGYRHPWARVLSGP--DPELTFDLWLSRLLTPQTRVLEAGCGHG 60

Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
                     A   A +    ++ L R      D
Sbjct: 61  PDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            L    A     ++L++G GTG  T  L + G  +  +E    +V L R+   S+     
Sbjct: 32  VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVT---F 88

Query: 192 LQEDF 196
                
Sbjct: 89  HHGTI 93

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L  + +       LEIG   G+ T  L      +  I+     +G   +R      +   
Sbjct: 43  LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102

Query: 193 QEDF 196
             D 
Sbjct: 103 ATDI 106

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L    A      VLE+  GTG  T  L      V A++    M+          D ++  
Sbjct: 38  LERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL--DNVEFR 95

Query: 193 QEDF 196
           Q+D 
Sbjct: 96  QQDL 99

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 24/155 (15%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASI---- 186
           LA+  A      + ++G G G+    +      A V   E+ Q M    R          
Sbjct: 28  LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA 87

Query: 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ-------- 236
              +++VL+ D     +     +  E       F  V+ N P+N + D            
Sbjct: 88  FSARIEVLEAD-----VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAH 142

Query: 237 ---LLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
                   D       ++     L L+      +E
Sbjct: 143 AMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE 177

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLK 190
           ++ A+   E   +L++G GTG L+  L+     AT   ++  + M+ + + RF    ++K
Sbjct: 36  VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95

Query: 191 VLQEDFVK 198
            ++ D+ K
Sbjct: 96  YIEADYSK 103

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 99  DDYHATIKALNSKGRFPRKSLG--------QHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             +H     L  +G    +  G           +  S +     AA A + G+++ +IG 
Sbjct: 5   HHHHHHSSGLVPRGSHMSQVPGRPESAFAHDGQITKSPMRALTLAALAPRRGELLWDIGG 64

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKVLQEDF 196
           G+GS++     AG   + IE     +  +++    +    +++ +Q   
Sbjct: 65  GSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA 113

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                +  G  +LE+G G G     +L AG  V A +    +      R  
Sbjct: 36  KFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG 86

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +LE+G   G  T+ L      +  +E  +  +   + R    D +  +   F
Sbjct: 46  LLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRF 95

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFAS 185
           +   L        G  VLE G G G+ T +L   N  A + +I+     +   RE    
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
             +   A  +    VL+IG G G             + ++  + MV +    
Sbjct: 11  GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 62

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            A    G  +L+ G G G +   L   G  VL  + D  ++   ++ F    
Sbjct: 41  DAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEAR 92

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +E   VL+IG  +G+L   +   G  V  IE         +E+   +    +   D 
Sbjct: 31  KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM 87

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
           +  A   ++ + VL++G G G L   L + G   + ++ D+ +V   R   A
Sbjct: 44  ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA 95

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195
              + +G  VLEIG G G  T ++      V+++E ++ M     +  +  + +K++  D
Sbjct: 65  ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD 124

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 118 SLGQHYMLNSEINDQLAAA--AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           +     M +S     +       V++   VL++G G G  T  L   G   + ++  + M
Sbjct: 28  NQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVM 87

Query: 176 VGLVRERFASIDQLKVLQED 195
           +   +ER      L  ++ D
Sbjct: 88  IQKGKER-GEGPDLSFIKGD 106

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            +A    + +   VLE G G+G+L  VL      V   E  +      ++        K 
Sbjct: 82  YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-----KF 136

Query: 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI--FSEVVL 249
                VK        +        + F  V    P++    V K L+    +        
Sbjct: 137 NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE--PWHYLEKVHKSLMEGAPVGFLLPTAN 194

Query: 250 LLQEET-ALRLVEPSLRTSE 268
            + +   ++     +L   E
Sbjct: 195 QVIKLLESIENYFGNLEVVE 214

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN--VLLNAGATVLAIEKDQHMVGLVRE 181
           +    +     +A A +  + + +IG G+GS+    +      T +  E  +     +  
Sbjct: 8   LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67

Query: 182 RFAS--IDQLKVLQEDF 196
              +  +     +Q+  
Sbjct: 68  NAINLGVSDRIAVQQGA 84

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 111 KGRFPRKSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATV 166
           +   P ++L   Y     +      AA    + G+  + IG G   LT +LL    G  V
Sbjct: 90  ESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRV 149

Query: 167 LAIEKDQHMVGLVRERFAS--IDQLKVLQED 195
             +E +  +  L R+      +D + V+  D
Sbjct: 150 NVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194
           A         VLE+  G G LT   L+ G  V A+E    ++   R+R A        + 
Sbjct: 76  ATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135

Query: 195 DFVKCHIRSHMLSLFER 211
             V+  + +   +L +R
Sbjct: 136 TLVQGDMSA--FALDKR 150

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 56/215 (26%)

Query: 173 QHM---VGLVRERFASIDQLKVLQEDFVK---C-HIRSHMLSLFERRKSSSGFAKVVANI 225
            HM    G  + ++  I  L V ++ FV    C  ++    S+                 
Sbjct: 5   HHMDFETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSIL---------------- 46

Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
               S + I  ++   D              LRL   +L + +   +  FV       YK
Sbjct: 47  ----SKEEIDHIIMSKD---------AVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYK 92

Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVP---LLNVLQFKLLTTT 342
           F +       + +   +++T    +  D       + F    V        L+  LL   
Sbjct: 93  FLMSP--IKTEQR-QPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALL--- 145

Query: 343 SSFPDDSALFVH------KNIILPSIFLDADIQQN 371
                   + +       K  +   + L   +Q  
Sbjct: 146 -ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
              +     VLEIG G+G  T +L +    V ++E+ + +    R R  ++D
Sbjct: 72  LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD 123

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQ 188
            +L   AA++  + VL++  G G + N        V+A +  + ++ + R         Q
Sbjct: 27  AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 86

Query: 189 LKVLQED 195
           ++ +Q D
Sbjct: 87  VEYVQGD 93

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 5/49 (10%), Positives = 16/49 (32%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                    +++   G G+ T  L      V+ ++  +  + +  +   
Sbjct: 51  ELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT 99

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185
           A  + +  IV++   G G+ T  L      V A +  +  +G   +R + 
Sbjct: 17  AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI--- 186
             L     ++ G  +L++G G+G +      + G T   I+         + R   +   
Sbjct: 26  ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS 85

Query: 187 DQLKVLQEDF 196
           +++  +  D 
Sbjct: 86  ERVHFIHNDA 95

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERF--ASIDQLKVL 192
            A ++ G  +LE+G G+G    ++       V  IE+   +V   +     A +  + V+
Sbjct: 86  IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI 145

Query: 193 QED 195
             D
Sbjct: 146 LGD 148

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-- 185
           +++     ++EG  VL++G G G     L         V AI+  + MV    E+     
Sbjct: 27  EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG 86

Query: 186 IDQLKVLQED 195
           +  ++VL+ +
Sbjct: 87  LKNVEVLKSE 96

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
           VL+IG G G    +    G   + ++ ++ M+     +        V++ D ++
Sbjct: 45  VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIE 92

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 137 AAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS 185
             + +   +++ G G G L  VL   L  G+    I+  + ++   RE F  
Sbjct: 18  WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID 187
             L A   ++      ++G G G+ T +L +      +  I+ D  M+    +R  + +
Sbjct: 23  RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 38.7 bits (91), Expect = 9e-04
 Identities = 9/47 (19%), Positives = 23/47 (48%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
               + + D+V+++G G+G +T  +      V AI+     + + ++
Sbjct: 29  GKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	100.0
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	100.0
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	100.0
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	100.0
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	100.0
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	100.0
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	100.0
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	100.0
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	100.0
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	100.0
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	100.0
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.5
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.48
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.46
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.46
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.34
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.33
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.33
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.32
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.32
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.3
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.3
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.29
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.28
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.27
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.27
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.27
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.27
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.27
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.26
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.26
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.25
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.25
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.25
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.23
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.23
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.23
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.23
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.23
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.22
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.22
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.22
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.22
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.2
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.19
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.19
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.19
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.18
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.18
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.17
3ufb_A	530	Type I restriction-modification system methyltran	99.17
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.17
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.17
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.17
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.16
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.16
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.15
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.15
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.15
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.15
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.15
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.14
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.14
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.14
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.13
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.11
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.1
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.1
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.1
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.1
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.1
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.1
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.09
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.09
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.09
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.09
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.09
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.08
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.08
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.08
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.08
3lkd_A	542	Type I restriction-modification system methyltrans	99.08
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.08
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.08
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.07
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.07
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.07
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.07
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.06
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.06
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.06
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.06
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.06
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.06
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.06
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.06
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.05
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.05
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.05
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.04
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.03
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.03
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.03
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.02
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.02
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.02
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.01
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.01
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.01
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.01
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.01
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.01
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.01
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.0
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.0
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.0
3khk_A	544	Type I restriction-modification system methylation	99.0
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.0
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.99
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.99
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.99
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.99
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.99
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.98
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.98
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.98
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.97
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.97
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.97
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.97
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.97
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.97
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.97
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.97
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.97
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.97
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.96
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.96
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.96
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.95
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.95
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.95
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.95
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.95
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.95
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.94
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.94
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.94
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.94
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.94
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.94
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.93
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.93
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.93
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.92
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.92
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.92
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.92
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.91
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.91
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.91
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.91
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.91
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.91
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.9
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.9
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.89
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.89
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.88
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.88
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.87
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.87
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.87
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.87
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.86
2o07_A	304	Spermidine synthase; structural genomics, structur	98.85
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.85
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.85
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.85
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.85
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.85
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.84
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.84
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.83
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.83
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.83
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.83
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.83
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.83
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.83
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.82
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.82
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.82
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.82
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.81
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.8
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.8
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.8
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.79
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.79
3ocj_A	305	Putative exported protein; structural genomics, PS	98.79
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.79
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.79
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.78
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.78
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.78
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.77
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.77
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.77
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.77
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.77
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.76
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.76
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.74
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.73
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.72
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.72
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.71
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.7
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.7
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.7
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.69
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.69
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.66
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.65
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.62
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.6
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.59
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.55
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.53
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.53
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.52
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.51
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.5
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.5
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.49
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.48
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.47
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.46
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.46
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.43
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.42
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.41
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.4
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.38
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.38
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.38
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.37
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.34
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.34
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.32
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.32
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.27
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.27
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.24
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.18
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.16
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.08
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.02
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.02
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.0
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.94
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.88
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.88
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.87
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.86
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.84
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.84
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.78
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.72
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.71
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.71
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.69
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.51
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.38
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.36
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.35
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.27
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.26
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.22
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.0
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.94
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.89
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.68
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.6
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.33
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.33
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.16
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.08
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.06
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.75
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.83
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	94.19
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.79
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.76
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.6
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.56
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	93.09
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	92.93
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.81
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.7
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.57
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	92.5
3imf_A	257	Short chain dehydrogenase; structural genomics, in	92.47
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.21
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.06
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.04
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.97
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	91.75
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.73
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	91.69
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.63
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.62
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.6
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.55
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.41
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	91.29
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	91.14
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	91.1
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.09
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.06
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	90.86
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	90.84
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.83
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	90.77
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	90.73
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	90.68
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	90.65
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.63
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	90.56
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	90.55
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	90.55
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	90.51
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	90.48
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	90.47
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.47
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	90.46
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	90.39
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	90.29
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	90.25
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	90.16
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.16
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	90.16
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	90.11
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	90.1
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.07
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	90.05
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	90.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	89.99
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.94
3cxt_A	291	Dehydrogenase with different specificities; rossma	89.9
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	89.88
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.84
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	89.83
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	89.74
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	89.69
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	89.68
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	89.67
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.66
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.55
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	89.55
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	89.52
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	89.5
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.42
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.4
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	89.37
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	89.36
1xkq_A	280	Short-chain reductase family member (5D234); parra	89.34
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	89.31
3rih_A	293	Short chain dehydrogenase or reductase; structural	89.29
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	89.1
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	89.07
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	88.95
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	88.87
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	88.83
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	88.83
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.79
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.76
4dqx_A	277	Probable oxidoreductase protein; structural genomi	88.69
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	88.48
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	88.46
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	88.4
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	88.38
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	88.34
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	88.32
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	88.3
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	88.29
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	88.26
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	88.23
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	88.14
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	88.13
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.11
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	87.93
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	87.92
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	87.92
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	87.85
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	87.83
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	87.82
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.77
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	87.75
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	87.74
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	87.65
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	87.57
1xhl_A	297	Short-chain dehydrogenase/reductase family member	87.54
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.48
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	87.38
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	87.37
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	87.37
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	87.36
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	87.24
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	87.19
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.1
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	87.1
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	87.07
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	87.05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.03
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.0
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	86.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	86.87
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.86
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	86.83
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.82
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	86.79
1spx_A	278	Short-chain reductase family member (5L265); paral	86.76
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	86.69
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.6
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	86.43
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	86.33
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	86.23
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	86.22
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	86.16
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	86.15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.13
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	86.12
1xq1_A	266	Putative tropinone reducatse; structural genomics,	86.01
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	86.0
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	85.95
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	85.92
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	85.9
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	85.79
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.63
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	85.62
4g65_A	461	TRK system potassium uptake protein TRKA; structur	85.58
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	85.48
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	85.42
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	85.4
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	85.36
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	85.35
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	85.28
4g65_A	461	TRK system potassium uptake protein TRKA; structur	85.23
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	85.18
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	85.12
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	85.06
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	85.02
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.85
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	84.73
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	84.69
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	84.65
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	84.63
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	84.52
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	84.51
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	84.49
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	84.46
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	84.18
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	84.16
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.08
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	84.07
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	83.96
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	83.78
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	83.77
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	83.76
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	83.74
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	83.7
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	83.61
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.48
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	83.23
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	83.21
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	83.15
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	83.12
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	83.08

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=2.1e-53  Score=400.41  Aligned_cols=235  Identities=22%  Similarity=0.409  Sum_probs=206.8

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~  193 (371)
                      +++|++||||++|+.+++.|++.+.+.++++|||||||+|.+|..|++.+.+|+|||+|++|++.+++++...+++++++
T Consensus         2 ~~~k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~   81 (255)
T 3tqs_A            2 PMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQ   81 (255)
T ss_dssp             -------CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCCcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999987667999999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls  273 (371)
                      +|++++++.+.        ...++++ ||+|+||+++++++.+++.....+..+++|+|||+|+|++ +.||++.||++|
T Consensus        82 ~D~~~~~~~~~--------~~~~~~~-vv~NlPY~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~-a~pg~k~yg~ls  151 (255)
T 3tqs_A           82 NDALQFDFSSV--------KTDKPLR-VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRIT-AEVGSHDYGRLS  151 (255)
T ss_dssp             SCTTTCCGGGS--------CCSSCEE-EEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHT-CCTTSTTCSHHH
T ss_pred             cchHhCCHHHh--------ccCCCeE-EEecCCcccCHHHHHHHHhCCCChheEEEEEeHHHHHHhh-CCCCCCccchhh
Confidence            99999987532        0123455 9999999999999999998877888999999999999999 899999999999


Q ss_pred             eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEc-cCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHH
Q 017450          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK-QATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALF  352 (371)
Q Consensus       274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~-~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~  352 (371)
                      |++|+|++++++++||+++|+|+|+|||+||+|+|+ +.+..  ..+.+.|+.+|+++|+||||||+|+|+++...  ..
T Consensus       152 v~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~~~~--~~~~~~~~~~v~~~F~~rrK~l~~~L~~~~~~--~~  227 (255)
T 3tqs_A          152 VMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRLIPRHNFTPV--AKNLDQLSHVVKEAFSYRRKTVGNALKKLINP--SQ  227 (255)
T ss_dssp             HHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCSCSSC--CSCHHHHHHHHHHHHHSTTSCHHHHTTTTCCG--GG
T ss_pred             heeeeeEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCCc--cccHHHHHHHHHHHHHccChHHHHHHhhhCCH--HH
Confidence            999999999999999999999999999999999998 55433  34678999999999999999999999988644  35


Q ss_pred             HHHcCCCCcc
Q 017450          353 VHKNIILPSI  362 (371)
Q Consensus       353 ~~~~~~~~~~  362 (371)
                      |.++||+|+.
T Consensus       228 l~~~~i~~~~  237 (255)
T 3tqs_A          228 WPLLEINPQL  237 (255)
T ss_dssp             TGGGTCCTTS
T ss_pred             HHHCCcCCCC
Confidence            7889999874

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=100.00  E-value=1.1e-52  Score=398.67  Aligned_cols=242  Identities=27%  Similarity=0.408  Sum_probs=220.8

Q ss_pred             cHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHH
Q 017450          100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV  179 (371)
Q Consensus       100 ~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a  179 (371)
                      +...+.+.+++++++++|++||||++|+.+++.|++.+.+.++ +|||||||+|.+|..|++.+.+|+|||+|++|++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l   84 (271)
T 3fut_A            6 SPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVL   84 (271)
T ss_dssp             CHHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CHHHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            4567788899999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhh
Q 017450          180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL  259 (371)
Q Consensus       180 ~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl  259 (371)
                      ++++.. ++++++++|++++++.+           ...+|.||+|+||+++++++.+|+.. ..+..+++|+|+|+|+|+
T Consensus        85 ~~~~~~-~~v~vi~~D~l~~~~~~-----------~~~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~QkEva~Rl  151 (271)
T 3fut_A           85 EETLSG-LPVRLVFQDALLYPWEE-----------VPQGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQKEVAERM  151 (271)
T ss_dssp             HHHTTT-SSEEEEESCGGGSCGGG-----------SCTTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEHHHHHHH
T ss_pred             HHhcCC-CCEEEEECChhhCChhh-----------ccCccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeeeeeeeec
Confidence            999873 58999999999987642           13579999999999999999999987 778899999999999999


Q ss_pred             ccCCCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchH
Q 017450          260 VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLL  339 (371)
Q Consensus       260 ~~a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~  339 (371)
                      + +.||++.||+|||++|+|++++++++||+++|+|+|+|||+||+|+|++.+.      .+.|+.+|+++|+||||||+
T Consensus       152 ~-A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~------~~~~~~~v~~~F~~rrKtL~  224 (271)
T 3fut_A          152 T-ARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGALD------DPGLFRLVEAAFGKRRKTLL  224 (271)
T ss_dssp             T-CCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSCCC------CHHHHHHHHHHTSSTTSCHH
T ss_pred             c-cCCCCCcccHHHHHHHHHeeEEEEEEEChHHeECCCCCcEEEEEEEECCCCc------HHHHHHHHHHHHhcCCcHHH
Confidence            9 8999999999999999999999999999999999999999999999987532      47899999999999999999


Q ss_pred             hhccCCC---CCchHHHHHcCCCCcc
Q 017450          340 TTTSSFP---DDSALFVHKNIILPSI  362 (371)
Q Consensus       340 ~~l~~~~---~~~~~~~~~~~~~~~~  362 (371)
                      |+|+++.   +.....|.++||+|+.
T Consensus       225 n~L~~~~~~~~~~~~~l~~~~i~~~~  250 (271)
T 3fut_A          225 NALAAAGYPKARVEEALRALGLPPRV  250 (271)
T ss_dssp             HHHHHTTCCHHHHHHHHHHTTCCTTC
T ss_pred             HHHHhhcCCHHHHHHHHHHCCcCCCC
Confidence            9998873   2234678999999974

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=100.00  E-value=3.1e-52  Score=397.22  Aligned_cols=239  Identities=23%  Similarity=0.396  Sum_probs=209.0

Q ss_pred             CCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCe----EEEEeCCHHHHHHHHHHhccCC
Q 017450          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASID  187 (371)
Q Consensus       112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~----V~aIE~d~~~i~~a~~~~~~~~  187 (371)
                      +++++|.+||||++|+.+++.|++.+.+.++++|||||||+|.+|..|++.+.+    |+|||+|++|++.++++.  .+
T Consensus        13 ~~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~   90 (279)
T 3uzu_A           13 GHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GE   90 (279)
T ss_dssp             -----CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GG
T ss_pred             CCCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CC
Confidence            678999999999999999999999999999999999999999999999998777    999999999999999984  45


Q ss_pred             CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCC
Q 017450          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (371)
Q Consensus       188 ~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k  267 (371)
                      +++++++|++++++.+...      ......+.||+|+||+|+++++.+|+.....+..+++|+|||+|+|++ +.||++
T Consensus        91 ~v~~i~~D~~~~~~~~~~~------~~~~~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~QkEva~Rl~-A~pg~k  163 (279)
T 3uzu_A           91 LLELHAGDALTFDFGSIAR------PGDEPSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMV-AEPGTK  163 (279)
T ss_dssp             GEEEEESCGGGCCGGGGSC------SSSSCCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEHHHHHHHT-CCTTST
T ss_pred             CcEEEECChhcCChhHhcc------cccCCceEEEEccCccccHHHHHHHHhccCCccEEEEEeeHHHHHHHh-CCCCCC
Confidence            8999999999998764210      000145789999999999999999998877788999999999999999 899999


Q ss_pred             CCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCC
Q 017450          268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPD  347 (371)
Q Consensus       268 ~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~  347 (371)
                      .||+|||++|+|++++++++||+++|+|+|+|||+||+|+|++.+..+ ..+.+.|+.+|+++|+||||||+|+|+++..
T Consensus       164 ~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~~~-~~~~~~~~~~v~~~F~~rrK~l~n~L~~~~~  242 (279)
T 3uzu_A          164 AFSRLSVMLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELP-AVDPAVLGEVVTAAFSQRRKMLRNTLGGYRD  242 (279)
T ss_dssp             TCCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCGGGSC-SSCHHHHHHHHHHHGGGTTSBHHHHTGGGTT
T ss_pred             cccHHHHHHhhheEEEEEEEEChHHccCCCCCeEEEEEEEecCCCCCC-cccHHHHHHHHHHHHhccChHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999998764333 3467899999999999999999999998765


Q ss_pred             CchHHHHHcCCCCcc
Q 017450          348 DSALFVHKNIILPSI  362 (371)
Q Consensus       348 ~~~~~~~~~~~~~~~  362 (371)
                      +  .+|.++||+|+.
T Consensus       243 ~--~~l~~~~i~~~~  255 (279)
T 3uzu_A          243 L--VDFDALGFDLAR  255 (279)
T ss_dssp             T--CCTTTTTCCTTS
T ss_pred             H--HHHHHCCcCCCC
Confidence            3  357888999864

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=100.00  E-value=1.9e-48  Score=365.43  Aligned_cols=224  Identities=26%  Similarity=0.400  Sum_probs=199.7

Q ss_pred             CCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCCCeEE
Q 017450          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKV  191 (371)
Q Consensus       113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~v  191 (371)
                      ++++|.+||||++|+.+++.|++.+...++++|||||||+|.+|..+++.+ .+|+|||+|+.+++.++++  ..+++++
T Consensus         3 ~~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~   80 (249)
T 3ftd_A            3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEV   80 (249)
T ss_dssp             -----CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEE
T ss_pred             CCCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEE
Confidence            578999999999999999999999999999999999999999999999995 8999999999999999988  3468999


Q ss_pred             EEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcc
Q 017450          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP  271 (371)
Q Consensus       192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~  271 (371)
                      +++|++++++.+.          .+ .+.|++|+||+++++++.+++.....+..+++|+|+|+|+|++ +   ++.||+
T Consensus        81 i~~D~~~~~~~~~----------~~-~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~-a---~k~yg~  145 (249)
T 3ftd_A           81 INEDASKFPFCSL----------GK-ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQ-G---KKDTGW  145 (249)
T ss_dssp             ECSCTTTCCGGGS----------CS-SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEHHHHHHHH-T---SSCCCH
T ss_pred             EEcchhhCChhHc----------cC-CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeHHHHHHhh-c---cccccH
Confidence            9999999887531          12 4589999999999999999999877888999999999999999 4   799999


Q ss_pred             eeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchH
Q 017450          272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSAL  351 (371)
Q Consensus       272 Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~  351 (371)
                      +|+++|++++++++++||+++|+|+|+|||+||+|+|++.+..+   ..+.|+.+|+++|+||||||+|+|+++      
T Consensus       146 lsv~~q~~~~~~~~~~v~~~~F~P~PkV~savv~l~~~~~~~~~---~~~~~~~~v~~~F~~rrk~l~~~l~~~------  216 (249)
T 3ftd_A          146 LSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVK---DLKNYKKFLTKIFQNRRKVLRKKIPEE------  216 (249)
T ss_dssp             HHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCC---CHHHHHHHHHHHHSSTTSCGGGTSCHH------
T ss_pred             HHHHHHhHEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCcc---hHHHHHHHHHHHHhCcChhHHHHHHHH------
Confidence            99999999999999999999999999999999999998764322   378899999999999999999999876      


Q ss_pred             HHHHcCCCCcc
Q 017450          352 FVHKNIILPSI  362 (371)
Q Consensus       352 ~~~~~~~~~~~  362 (371)
                      .|.++||+|+.
T Consensus       217 ~l~~~~i~~~~  227 (249)
T 3ftd_A          217 LLKEAGINPDA  227 (249)
T ss_dssp             HHHHTTCCTTC
T ss_pred             HHHHCCCCCCC
Confidence            78999999964

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=100.00  E-value=5e-48  Score=363.13  Aligned_cols=229  Identities=22%  Similarity=0.352  Sum_probs=202.6

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCe--EEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~--V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      |||++|+.++++|++.+.+.++++|||||||+|.+|. ++ .+.+  |+|||+|++|++.+++++...++++++++|+.+
T Consensus         1 QnfL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~   78 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence            8999999999999999999999999999999999999 65 4667  999999999999999988655689999999999


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeee
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF  278 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~  278 (371)
                      +++.+.. ++      .+..++||+|+||+++++++.+++.....+..+++|+|+|+|+|++ +.||++.||+||+++|+
T Consensus        79 ~~~~~~~-~~------~~~~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~QkEva~Rl~-a~pG~k~yg~lsv~~q~  150 (252)
T 1qyr_A           79 FNFGELA-EK------MGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQY  150 (252)
T ss_dssp             CCHHHHH-HH------HTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHH
T ss_pred             CCHHHhh-cc------cCCceEEEECCCCCccHHHHHHHHhcCCCcceEEEEEeHHHHHHhc-CCCCCccccHHHHHHHH
Confidence            8765321 00      1346899999999999999999998766788999999999999999 89999999999999999


Q ss_pred             eccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHHHHcCC
Q 017450          279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNII  358 (371)
Q Consensus       279 ~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~~~~~~  358 (371)
                      +++++.+++||+++|+|+|+|||+||+|+|++.+..+ ..+.+.|+.+|+++|+||||||+|+|+++..  ...|.++||
T Consensus       151 ~~~~~~~~~v~~~~F~P~PkV~Savv~l~~~~~~~~~-~~~~~~~~~~v~~~F~~rrK~l~n~l~~~~~--~~~l~~~~i  227 (252)
T 1qyr_A          151 YCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFS--VEVLTGMGI  227 (252)
T ss_dssp             HEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSC-CSCHHHHHHHHHHHHHTTTSBHHHHTTTTCC--HHHHHHTTC
T ss_pred             HheEEEEEEEChHHccCCCCceEEEEEEEEcCcCCCC-ccCHHHHHHHHHHHHHhCCcHHHHHHhhhhh--HHHHHHcCC
Confidence            9999999999999999999999999999998764332 2357889999999999999999999998764  456889999


Q ss_pred             CCcc
Q 017450          359 LPSI  362 (371)
Q Consensus       359 ~~~~  362 (371)
                      +|+.
T Consensus       228 ~~~~  231 (252)
T 1qyr_A          228 DPAM  231 (252)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            9974

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=100.00  E-value=2.7e-48  Score=372.54  Aligned_cols=239  Identities=26%  Similarity=0.394  Sum_probs=199.3

Q ss_pred             HHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450          105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       105 ~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ...+.+++.+++|.+||||++|+.++++|++.+.+.++++|||||||+|.+|..|++.+.+|+|||+|+++++.+++++.
T Consensus        14 ~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           14 LVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             ----------------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH
T ss_pred             hchhHhcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCC
Q 017450          185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSL  264 (371)
Q Consensus       185 ~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~p  264 (371)
                      ..++++++++|++++++.+            ..||+||+|+||+++++++.++++.+  +..+++|+|+|+|+|++ +.|
T Consensus        94 ~~~~v~vi~gD~l~~~~~~------------~~fD~Iv~NlPy~is~pil~~lL~~~--~~~~~lm~Q~eva~Rl~-a~p  158 (295)
T 3gru_A           94 LYNNIEIIWGDALKVDLNK------------LDFNKVVANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMV-AAA  158 (295)
T ss_dssp             HCSSEEEEESCTTTSCGGG------------SCCSEEEEECCGGGHHHHHHHHHHHC--CSEEEEEEEHHHHHHHH-CCT
T ss_pred             cCCCeEEEECchhhCCccc------------CCccEEEEeCcccccHHHHHHHHhcc--cceEEEeeecccccEEE-ecC
Confidence            6679999999999987532            35899999999999999999999853  66789999999999999 899


Q ss_pred             CCCCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450          265 RTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS  344 (371)
Q Consensus       265 g~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~  344 (371)
                      |++.||++|+++|++++++++++||+++|+|+|+|||+||+|+|++.+ . ...+.+.|+.+|+++|+||||||+|+|++
T Consensus       159 g~k~yg~Lsv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~-~-~~~~~~~~~~~v~~~F~~rrK~l~n~L~~  236 (295)
T 3gru_A          159 GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGK-Y-HIENENFFDDFLRAIFQHRNKSVRKALID  236 (295)
T ss_dssp             TSTTCSHHHHHHHTTEEEEEEEEECGGGEESCCSSCEEEEEEEECHHH-H-CCSCHHHHHHHHHHHHTTTTSBHHHHHHH
T ss_pred             CCcchhHHHHHHHhhccEEEEEEECcccCCCcCCCeEEEEEEEcCCCC-C-CcccHHHHHHHHHHHHccCchHHHHHHhh
Confidence            999999999999999999999999999999999999999999998532 2 23467889999999999999999999987


Q ss_pred             CCC-------CchHHHHHc-----CCCC
Q 017450          345 FPD-------DSALFVHKN-----IILP  360 (371)
Q Consensus       345 ~~~-------~~~~~~~~~-----~~~~  360 (371)
                      +..       .....|.++     ||+|
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (295)
T 3gru_A          237 SSKELNYNKDEMKKILEDFLNTNSEIKN  264 (295)
T ss_dssp             TGGGGTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhccccCCHHHHHHHHHHhhhcccCCCc
Confidence            532       123456776     6766

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=100.00  E-value=7.6e-45  Score=355.66  Aligned_cols=229  Identities=15%  Similarity=0.132  Sum_probs=192.4

Q ss_pred             CCcccccCcccCCCHHHHHHHHHHhcCCC------CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhc
Q 017450          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~------~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ..++|++|||||+|++++++|++.+++.+      ++.|||||||.|.+|..|++.  +.+|++||+|+++++.+++.+ 
T Consensus        24 ~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-  102 (353)
T 1i4w_A           24 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-  102 (353)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-
T ss_pred             cCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-
Confidence            35889999999999999999999998764      589999999999999999986  569999999999999999987 


Q ss_pred             cCCCeEEEEcccccch-hhhhhhh--HHHh----hccCCCeeEEEecCCCcccHHHHHHhccCC--------CchhHHHH
Q 017450          185 SIDQLKVLQEDFVKCH-IRSHMLS--LFER----RKSSSGFAKVVANIPFNISTDVIKQLLPMG--------DIFSEVVL  249 (371)
Q Consensus       185 ~~~~v~vi~gD~~~~~-~~~~~~~--l~~~----~~~~~~~d~VVaNlPy~iss~il~~Ll~~g--------~~~~~~~l  249 (371)
                      ..++++++++|+++++ +.+...+  +...    .........||||+||+|+++++.+++...        ..+..+++
T Consensus       103 ~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~l  182 (353)
T 1i4w_A          103 EGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL  182 (353)
T ss_dssp             TTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEEE
T ss_pred             cCCCEEEEECCccchhhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhccccccccccCcceEEE
Confidence            4579999999998886 3321100  0000    000011358999999999999999998731        12357899


Q ss_pred             HhhhhHHhhhccCCCCCCCCcceeeeeeeeccceEEEEeC---CCCcccCC----------CC--------ceEEEEEEE
Q 017450          250 LLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP---RTNFFPQP----------KV--------DAAVVTFKL  308 (371)
Q Consensus       250 mvQke~a~rl~~a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp---~~~F~P~P----------kV--------dS~vv~l~~  308 (371)
                      |+|+|+|+|++ |.||++.||+|||++|+++++++++.||   +++|+|+|          +|        ||+||+|+|
T Consensus       183 mvQkEvA~Rl~-A~PGsk~yg~LSV~~q~~~~v~~l~~v~~~~~~~F~P~P~~k~~p~~~PkV~~~~~~~~dSaVV~l~p  261 (353)
T 1i4w_A          183 WMPSTTARKLL-ARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDP  261 (353)
T ss_dssp             EEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEEEEE
T ss_pred             EeEHHHHHHhc-CCCCCccccHHHHHHHHHcceEEEEecCCccCCCccCCCcccccccccCcccccCCCCCceEEEEEEE
Confidence            99999999999 8999999999999999999999999999   99999998          89        999999999


Q ss_pred             ccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCC
Q 017450          309 KQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDD  348 (371)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~  348 (371)
                      ++.   +  .+.+.|+.+|+++|+||||||+|+|+.+...
T Consensus       262 ~~~---~--~~~~~~~~vvr~~F~qRRKtL~n~L~~l~~~  296 (353)
T 1i4w_A          262 IDF---D--FDVDNWDYVTRHLMILKRTPLNTVMDSLGHG  296 (353)
T ss_dssp             CCC---C--SCHHHHHHHHHHHHTTTTSCTTTGGGGSSTT
T ss_pred             CCC---c--ccHHHHHHHHHHHHhhchHHHHHHHHhhccc
Confidence            764   1  3567899999999999999999999887543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=100.00  E-value=1.8e-40  Score=309.93  Aligned_cols=220  Identities=24%  Similarity=0.353  Sum_probs=186.6

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~  193 (371)
                      ++++.+||||++++.+++.|++.+.+.++++|||||||+|.+|..+++.+.+|+|||+|+.+++.+++++...+++++++
T Consensus         3 ~~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~   82 (244)
T 1qam_A            3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLN   82 (244)
T ss_dssp             -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred             CCCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEE
Confidence            57899999999999999999999998899999999999999999999999999999999999999999987667999999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls  273 (371)
                      +|+.++++.            .+....||+|+||+++++++.+++.+ .....+++|+|+|++.|++ +.+     |.++
T Consensus        83 ~D~~~~~~~------------~~~~~~vv~nlPy~~~~~~l~~~l~~-~~~~~~~lm~q~e~a~rll-~~~-----G~l~  143 (244)
T 1qam_A           83 KDILQFKFP------------KNQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NTK-----RSLA  143 (244)
T ss_dssp             CCGGGCCCC------------SSCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CTT-----SHHH
T ss_pred             ChHHhCCcc------------cCCCeEEEEeCCcccCHHHHHHHHhc-CCCCeEEEEEEHHHHHHHh-cCC-----cchh
Confidence            999988652            11233799999999999999999875 3456678999999999998 433     7899


Q ss_pred             eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHH
Q 017450          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFV  353 (371)
Q Consensus       274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~  353 (371)
                      ++.+++++++.++.||+++|+|+|+|+|+|+++++++. ..+ ..+.+.|+.+|+++|+||||+|.|++.        .+
T Consensus       144 v~~~~~~~~~~~~~v~~~~F~P~p~v~s~vv~~~~~~~-~~~-~~~~~~~~~~v~~~F~~rrk~l~~~~~--------~~  213 (244)
T 1qam_A          144 LFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKS-RIS-HKDKQKYNYFVMKWVNKEYKKIFTKNQ--------FN  213 (244)
T ss_dssp             HHHTTTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCC-SSC-GGGHHHHHHHHHHHHTTCGGGTCCHHH--------HH
T ss_pred             HHhhhhEeEEEEEEEChhhccCCCCceEEEEEEEECCC-CCC-cccHHHHHHHHHHHHhhccccccchHH--------HH
Confidence            99999999999999999999999999999999998753 222 235688999999999999999999882        47


Q ss_pred             HHcCCCCcc
Q 017450          354 HKNIILPSI  362 (371)
Q Consensus       354 ~~~~~~~~~  362 (371)
                      .++||+|..
T Consensus       214 ~~~~~~~~~  222 (244)
T 1qam_A          214 NSLKHAGID  222 (244)
T ss_dssp             HHHHHHTCS
T ss_pred             HHCCCCCCC
Confidence            788888753

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=100.00  E-value=3.9e-40  Score=314.47  Aligned_cols=211  Identities=30%  Similarity=0.437  Sum_probs=189.5

Q ss_pred             ccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEE
Q 017450          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVL  192 (371)
Q Consensus       116 ~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi  192 (371)
                      +|.+||||++++.+++.|++.+...++++|||||||+|.+|..+++.+.+|+|||+|+.+++.+++++...   ++++++
T Consensus         3 ~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~   82 (285)
T 1zq9_A            3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVL   82 (285)
T ss_dssp             -----CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred             CCCCCcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            68899999999999999999999999999999999999999999999999999999999999999998654   379999


Q ss_pred             EcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcce
Q 017450          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (371)
Q Consensus       193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~L  272 (371)
                      ++|+.+.++              +.+|.|++|+||+++++++.+++.+...+..+++|+|+|+++|++ +.||++.|+.+
T Consensus        83 ~~D~~~~~~--------------~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~v-lkPGg~~y~~l  147 (285)
T 1zq9_A           83 VGDVLKTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRL  147 (285)
T ss_dssp             ESCTTTSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHH
T ss_pred             Ecceecccc--------------hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHh-cCCCCcccchh
Confidence            999998743              368999999999999999999998777788899999999999998 78999999999


Q ss_pred             eeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450          273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS  344 (371)
Q Consensus       273 sv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~  344 (371)
                      |+..+++++++..+.||+++|+|+|+|+|+|+++.+++.+.   ..+.+.|+.+++++|+||||+|.|+|++
T Consensus       148 sv~~~~~~~~~~~~~v~~~~F~P~p~v~savv~~~~~~~~~---~~~~~~~~~~~~~~F~~rrK~l~~~l~~  216 (285)
T 1zq9_A          148 SINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPP---PINFQEWDGLVRITFVRKNKTLSAAFKS  216 (285)
T ss_dssp             HHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCC---SCCHHHHHHHHHHHHTTTTSBHHHHTTS
T ss_pred             hhhhhhhhheeeeEEEChhhCCCCCCCcEEEEEEEECCCCC---CCCHHHHHHHHHHHHhcchhHHHHHhch
Confidence            99999999999999999999999999999999999986532   2346789999999999999999999875

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.4e-39  Score=312.83  Aligned_cols=217  Identities=31%  Similarity=0.443  Sum_probs=183.9

Q ss_pred             hcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--C
Q 017450          110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D  187 (371)
Q Consensus       110 ~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~  187 (371)
                      +++..+++.+||||++++.+++.|++.+.+.++++|||||||+|.+|..+++.+.+|+|||+|+.+++.+++++...  +
T Consensus        11 ~~~~~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~   90 (299)
T 2h1r_A           11 SSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYN   90 (299)
T ss_dssp             ------------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             cccccchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            34667899999999999999999999999989999999999999999999999889999999999999999988533  5


Q ss_pred             CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCC
Q 017450          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (371)
Q Consensus       188 ~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k  267 (371)
                      +++++++|+.++++              +.+|.|++|+||+++++++.+++.....+..+++|+|+|++.|++ +.||++
T Consensus        91 ~v~~~~~D~~~~~~--------------~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rll-a~~G~~  155 (299)
T 2h1r_A           91 NLEVYEGDAIKTVF--------------PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERML-ANVGDS  155 (299)
T ss_dssp             CEEC----CCSSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHT-CCTTST
T ss_pred             ceEEEECchhhCCc--------------ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHh-cCCCCc
Confidence            89999999998743              468999999999999999999998777788899999999999999 889999


Q ss_pred             CCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450          268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS  344 (371)
Q Consensus       268 ~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~  344 (371)
                      .|+.+++..+++++++.++.||++.|.|+|+|+|+|+++.+++.+ ..  .+.+.|+.+++.+|+||||+|.|+|++
T Consensus       156 ~y~~ls~~~~~~~~~~~~~~v~~~~F~p~p~V~s~vv~~~~~~~~-~~--~~~~~~~~~v~~~F~~rrKtl~~~l~~  229 (299)
T 2h1r_A          156 NYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKESS-FL--TNFDEWDNLLRICFSRKRKTLHAIFKR  229 (299)
T ss_dssp             TCCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECGGG-GG--SCHHHHHHHHHHHHTTTTSBHHHHHTS
T ss_pred             chhHHHHHHHHhhceEEEEEECchhcCCCCCCEEEEEEEEECCCC-CC--CCHHHHHHHHHHHHhhcchHHHHHhhh
Confidence            999999999999999999999999999999999999999987653 11  256789999999999999999999864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=100.00  E-value=5.1e-35  Score=272.58  Aligned_cols=219  Identities=23%  Similarity=0.385  Sum_probs=185.5

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~  193 (371)
                      ++++.+||||++++.+++.|++.+...++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+++++++
T Consensus         2 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~   81 (245)
T 1yub_A            2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCcccCCCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEE
Confidence            57899999999999999999999999899999999999999999999999999999999999999988876445899999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls  273 (371)
                      +|+.++++.           ..+.+ .||+|+||+++++++.+++.+ .....+++|+|+|.+.|++ + |+    |.++
T Consensus        82 ~D~~~~~~~-----------~~~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll-~-~~----G~l~  142 (245)
T 1yub_A           82 QDILQFQFP-----------NKQRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL-D-IH----RTLG  142 (245)
T ss_dssp             SCCTTTTCC-----------CSSEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH-C-GG----GSHH
T ss_pred             CChhhcCcc-----------cCCCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHh-C-CC----Cchh
Confidence            999987642           11346 899999999999999888754 2344578899999999999 3 33    7789


Q ss_pred             eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHH
Q 017450          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFV  353 (371)
Q Consensus       274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~  353 (371)
                      +..+.+++++..+.+++..|.|.|+|+|+++++++++. ... ..+...|..+++++|+||||+|.|++.        .+
T Consensus       143 v~~~~~~~~~~~~~v~~~~f~P~p~v~s~~v~~~~~~~-~~~-~~~~~~~~~~~~~~f~~rrk~l~~~~~--------~~  212 (245)
T 1yub_A          143 LLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTT-DVP-DKYWKLYTYFVSKWVNREYRQLFTKNQ--------FH  212 (245)
T ss_dssp             HHTTTTBCCCEEEEECCTTSBSSCCSCEEEEEECBCSC-SSC-HHHHHHHHHHHHHHHHTCHHHHCSSSH--------HH
T ss_pred             hhheeheeEEEEEEECchhccCCCCceEEEEEEEECCC-CCC-cccHHHHHHHHHHHHhhcchhhhchHH--------HH
Confidence            99999999999999999999999999999999987542 222 224567999999999999999999873        35


Q ss_pred             HHcCCCCc
Q 017450          354 HKNIILPS  361 (371)
Q Consensus       354 ~~~~~~~~  361 (371)
                      .+.||+|.
T Consensus       213 ~~~~~~~~  220 (245)
T 1yub_A          213 QAMKHAKV  220 (245)
T ss_dssp             HHHHHTTC
T ss_pred             HHcCCCCC
Confidence            66666654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.50  E-value=2.4e-13  Score=123.60  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=108.3

Q ss_pred             HHHHHHhhhcCCCCcHHHHHHHHHhcCCC---c---------------ccccCcccCCCHHHHHHHHHHhcCCCCCEEEE
Q 017450           86 AASACIVCARSQDDDYHATIKALNSKGRF---P---------------RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (371)
Q Consensus        86 ~r~~mv~~~~~~~~~~~~~~~~l~~~~~~---~---------------~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLE  147 (371)
                      +|+.|+++|++    +.++.++|......   +               ....|| .+..+.++..+++.+...++++|||
T Consensus         2 ar~~~~~~~~~----~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vLd   76 (231)
T 1vbf_A            2 SEKEEILRKIK----TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGI-NTTALNLGIFMLDELDLHKGQKVLE   76 (231)
T ss_dssp             CHHHHHHHHCC----CHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTE-EECCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cHHHHHHHHhC----CHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCC-ccCCHHHHHHHHHhcCCCCCCEEEE
Confidence            57889999999    56666666653221   0               112355 4788999999999999889999999


Q ss_pred             EcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          148 IGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       148 IG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ||||+|.++..+++.+.+|+++|+++.+++.+++++...++++++.+|+.+...            ..+.||+|+++.++
T Consensus        77 iG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~v~~~~~~  144 (231)
T 1vbf_A           77 IGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE------------EEKPYDRVVVWATA  144 (231)
T ss_dssp             ECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG------------GGCCEEEEEESSBB
T ss_pred             EcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc------------cCCCccEEEECCcH
Confidence            999999999999999899999999999999999998766689999999987321            12579999988654


Q ss_pred             -cccHHHHHHhccCCCc
Q 017450          228 -NISTDVIKQLLPMGDI  243 (371)
Q Consensus       228 -~iss~il~~Ll~~g~~  243 (371)
                       ++...+...|.++|.+
T Consensus       145 ~~~~~~~~~~L~pgG~l  161 (231)
T 1vbf_A          145 PTLLCKPYEQLKEGGIM  161 (231)
T ss_dssp             SSCCHHHHHTEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEE
Confidence             4555555555555433

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.48  E-value=3.2e-13  Score=120.77  Aligned_cols=102  Identities=29%  Similarity=0.405  Sum_probs=88.1

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-C
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q  188 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~  188 (371)
                      .+++.+|| |.+++.+...++..+.   ..++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ +
T Consensus        20 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   98 (207)
T 1wy7_A           20 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   98 (207)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             Ccccceee-ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            56788999 8899999998887664   45788999999999999999999864 79999999999999999987655 8


Q ss_pred             eEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       189 v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      ++++++|+.+++               ..+|+|++|+||+...
T Consensus        99 ~~~~~~d~~~~~---------------~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           99 FKVFIGDVSEFN---------------SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EEEEESCGGGCC---------------CCCSEEEECCCCSSSS
T ss_pred             EEEEECchHHcC---------------CCCCEEEEcCCCcccc
Confidence            999999998752               3699999999997653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.46  E-value=7.4e-13  Score=118.63  Aligned_cols=145  Identities=18%  Similarity=0.196  Sum_probs=109.1

Q ss_pred             HHHHHHhhhc-CCCCcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450           86 AASACIVCAR-SQDDDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (371)
Q Consensus        86 ~r~~mv~~~~-~~~~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEI  148 (371)
                      .|..|+..++ ...+...++.+++......   +.             ...|+ ++..+.+...+++.+...++++||||
T Consensus         6 ~~~~~~~~~l~~~gv~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~vLdi   84 (210)
T 3lbf_A            6 RRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQ-TISQPYMVARMTELLELTPQSRVLEI   84 (210)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSC-EECCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCC-EeCCHHHHHHHHHhcCCCCCCEEEEE
Confidence            3456666766 5566777777777654321   10             11233 56789999999999999999999999


Q ss_pred             cCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          149 GPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       149 G~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      |||+|.++..+++.+.+|+++|+++.+++.+++++...  ++++++.+|+.+...            ..+.||+|+++..
T Consensus        85 G~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~~D~i~~~~~  152 (210)
T 3lbf_A           85 GTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ------------ARAPFDAIIVTAA  152 (210)
T ss_dssp             CCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG------------GGCCEEEEEESSB
T ss_pred             cCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc------------cCCCccEEEEccc
Confidence            99999999999999999999999999999999998754  379999999987543            2357999998743


Q ss_pred             -CcccHHHHHHhccCCCc
Q 017450          227 -FNISTDVIKQLLPMGDI  243 (371)
Q Consensus       227 -y~iss~il~~Ll~~g~~  243 (371)
                       .++..++...|.++|.+
T Consensus       153 ~~~~~~~~~~~L~pgG~l  170 (210)
T 3lbf_A          153 PPEIPTALMTQLDEGGIL  170 (210)
T ss_dssp             CSSCCTHHHHTEEEEEEE
T ss_pred             hhhhhHHHHHhcccCcEE
Confidence             34555555555555543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.3e-13  Score=121.94  Aligned_cols=97  Identities=21%  Similarity=0.322  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccc
Q 017450          124 MLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~  197 (371)
                      .+...+.+.+++.+..   .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...  ++++++++|+.
T Consensus        24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  103 (189)
T 3p9n_A           24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA  103 (189)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH
T ss_pred             cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH
Confidence            3455666666666543   5788999999999999998888765 7999999999999999998654  38999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ++...          ...+.||+|++|+||+..
T Consensus       104 ~~~~~----------~~~~~fD~i~~~~p~~~~  126 (189)
T 3p9n_A          104 AVVAA----------GTTSPVDLVLADPPYNVD  126 (189)
T ss_dssp             HHHHH----------CCSSCCSEEEECCCTTSC
T ss_pred             HHHhh----------ccCCCccEEEECCCCCcc
Confidence            86421          124679999999999874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.34  E-value=5.7e-12  Score=112.18  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             cccccCcccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeE
Q 017450          115 PRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLK  190 (371)
Q Consensus       115 ~~k~lGQ~fl~~~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~  190 (371)
                      ++..++| |.++..+...++..+.   ..++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..   +++
T Consensus        23 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~   98 (200)
T 1ne2_A           23 FKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVN   98 (200)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSE
T ss_pred             cccceee-cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCE
Confidence            4455666 7788888888887664   45778999999999999999998865 79999999999999999976   799


Q ss_pred             EEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       191 vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      ++++|+.+++               +.+|+|++|+||+...
T Consensus        99 ~~~~d~~~~~---------------~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           99 FMVADVSEIS---------------GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             EEECCGGGCC---------------CCEEEEEECCCC----
T ss_pred             EEECcHHHCC---------------CCeeEEEECCCchhcc
Confidence            9999998752               4699999999997654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.33  E-value=1.5e-11  Score=111.57  Aligned_cols=147  Identities=13%  Similarity=0.182  Sum_probs=105.1

Q ss_pred             HHHHHhhhcCCC-CcHHHHHHHHHhcCCC---ccc---------ccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 017450           87 ASACIVCARSQD-DDYHATIKALNSKGRF---PRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (371)
Q Consensus        87 r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~k---------~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G  151 (371)
                      +..|++.+.+.+ .....+.+.+......   +..         ..|+ .+..+.+...+++.+  .+.++++|||||||
T Consensus        12 ~~~~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G   90 (227)
T 2pbf_A           12 HKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGV-TISAPHMHALSLKRLINVLKPGSRAIDVGSG   90 (227)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSSTTSSSCEEEETTE-EECCHHHHHHHHHHHTTTSCTTCEEEEESCT
T ss_pred             HHHHHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcccCCCCccccCCCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            566777777554 5678888888764321   111         1233 577888999999888  47788999999999


Q ss_pred             ccHHHHHHHHhCC-------eEEEEeCCHHHHHHHHHHhccC-------CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          152 TGSLTNVLLNAGA-------TVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       152 ~G~lt~~La~~~~-------~V~aIE~d~~~i~~a~~~~~~~-------~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      +|.++..+++...       +|+++|+++.+++.|++++...       ++++++.+|+.+......    .    ....
T Consensus        91 ~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~----~~~~  162 (227)
T 2pbf_A           91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK----K----ELGL  162 (227)
T ss_dssp             TSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH----H----HHCC
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC----c----cCCC
Confidence            9999999998753       9999999999999999987643       479999999987431000    0    1256


Q ss_pred             eeEEEecCCC-cccHHHHHHhccCCC
Q 017450          218 FAKVVANIPF-NISTDVIKQLLPMGD  242 (371)
Q Consensus       218 ~d~VVaNlPy-~iss~il~~Ll~~g~  242 (371)
                      ||+|+.+.++ .+...+...|.++|.
T Consensus       163 fD~I~~~~~~~~~~~~~~~~LkpgG~  188 (227)
T 2pbf_A          163 FDAIHVGASASELPEILVDLLAENGK  188 (227)
T ss_dssp             EEEEEECSBBSSCCHHHHHHEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHhcCCCcE
Confidence            9999988765 344445444445443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.33  E-value=1.4e-12  Score=113.71  Aligned_cols=91  Identities=14%  Similarity=0.296  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchh
Q 017450          127 SEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHI  201 (371)
Q Consensus       127 ~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~  201 (371)
                      ..+.+.+++.+. ..++++|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...+   +++++.+|+.+...
T Consensus        16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID   95 (177)
T ss_dssp             --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence            345666777666 5678899999999999999999985 599999999999999999987653   69999999987421


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      .           ..+.||+|++|+||.
T Consensus        96 ~-----------~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           96 C-----------LTGRFDLVFLDPPYA  111 (177)
T ss_dssp             H-----------BCSCEEEEEECCSSH
T ss_pred             h-----------hcCCCCEEEECCCCC
Confidence            1           235699999999984

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.32  E-value=1.2e-11  Score=112.29  Aligned_cols=97  Identities=15%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~  200 (371)
                      +++....+.+.......++++|||+||| +|.++..+++. +.+|+|+|+|+.+++.|++++...+ +++++++|+..+.
T Consensus        38 ~~p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  117 (230)
T 3evz_A           38 LVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK  117 (230)
T ss_dssp             CCCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSST
T ss_pred             EeCCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhh
Confidence            3444445666444456788999999999 99999999998 8899999999999999999987665 7999999975432


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      .           ...+.||+|++|+||....
T Consensus       118 ~-----------~~~~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          118 G-----------VVEGTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             T-----------TCCSCEEEEEECCCCC---
T ss_pred             h-----------cccCceeEEEECCCCcCCc
Confidence            1           1236799999999996543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.32  E-value=8.3e-12  Score=109.50  Aligned_cols=80  Identities=14%  Similarity=0.276  Sum_probs=66.1

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...  ++++++++|+..++..           ..
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~-----------~~   87 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY-----------VR   87 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT-----------CC
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh-----------cc
Confidence            3567899999999999999999999889999999999999999998643  4899999888765321           23


Q ss_pred             CCeeEEEecCCCc
Q 017450          216 SGFAKVVANIPFN  228 (371)
Q Consensus       216 ~~~d~VVaNlPy~  228 (371)
                      +.||.|++|++|.
T Consensus        88 ~~fD~v~~~~~~~  100 (185)
T 3mti_A           88 EPIRAAIFNLGYL  100 (185)
T ss_dssp             SCEEEEEEEEC--
T ss_pred             CCcCEEEEeCCCC
Confidence            6799999998763

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=2.1e-11  Score=109.43  Aligned_cols=145  Identities=21%  Similarity=0.201  Sum_probs=105.9

Q ss_pred             HHHHHHHhhh-cCCCCcHHHHHHHHHhcCCC---ccc-------------ccCcccCCCHHHHHHHHHHhcCCCCCEEEE
Q 017450           85 GAASACIVCA-RSQDDDYHATIKALNSKGRF---PRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (371)
Q Consensus        85 ~~r~~mv~~~-~~~~~~~~~~~~~l~~~~~~---~~k-------------~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLE  147 (371)
                      .+|..|++.. .+...+..++.+.+......   +..             ..|+ .+..+.++..+++.+...++.+|||
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vLd   83 (215)
T 2yxe_A            5 EQKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQ-TISAIHMVGMMCELLDLKPGMKVLE   83 (215)
T ss_dssp             HHHHHHHHHHHHHTSCCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTE-EECCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             HHHHHHHHHhHHhcCCCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCc-EeCcHHHHHHHHHhhCCCCCCEEEE
Confidence            4567788655 34456788888888775332   111             1233 4577899999999999889999999


Q ss_pred             EcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450          148 IGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (371)
Q Consensus       148 IG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV  222 (371)
                      ||||+|.++..+++.+   .+|+++|+++.+++.+++++...  ++++++.+|+.....            ....||+|+
T Consensus        84 iG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~v~  151 (215)
T 2yxe_A           84 IGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE------------PLAPYDRIY  151 (215)
T ss_dssp             ECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG------------GGCCEEEEE
T ss_pred             ECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC------------CCCCeeEEE
Confidence            9999999999999874   79999999999999999987643  479999999854311            125699999


Q ss_pred             ecCCCc-ccHHHHHHhccCCC
Q 017450          223 ANIPFN-ISTDVIKQLLPMGD  242 (371)
Q Consensus       223 aNlPy~-iss~il~~Ll~~g~  242 (371)
                      ++.++. +...+...|.++|.
T Consensus       152 ~~~~~~~~~~~~~~~L~pgG~  172 (215)
T 2yxe_A          152 TTAAGPKIPEPLIRQLKDGGK  172 (215)
T ss_dssp             ESSBBSSCCHHHHHTEEEEEE
T ss_pred             ECCchHHHHHHHHHHcCCCcE
Confidence            886653 44444444444443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.30  E-value=1.1e-11  Score=124.75  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---------------CCeEEEEeCCHHHHHH
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGL  178 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---------------~~~V~aIE~d~~~i~~  178 (371)
                      ..++..|| |.+++.+++.|++.+.+.++.+|||+|||+|.++..+++.               +.+++|+|+|+.+++.
T Consensus       145 ~~~~~~G~-fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~l  223 (445)
T 2okc_A          145 DKKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  223 (445)
T ss_dssp             CTTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             hccccCCc-ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHH
Confidence            44567888 7799999999999999888899999999999999888763               3579999999999999


Q ss_pred             HHHHhccC--C--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          179 VRERFASI--D--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       179 a~~~~~~~--~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      |+.++...  +  +++++++|++..+.             ...||+|++|+||...
T Consensus       224 A~~nl~l~g~~~~~~~i~~gD~l~~~~-------------~~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          224 ASMNLYLHGIGTDRSPIVCEDSLEKEP-------------STLVDVILANPPFGTR  266 (445)
T ss_dssp             HHHHHHHTTCCSSCCSEEECCTTTSCC-------------SSCEEEEEECCCSSCC
T ss_pred             HHHHHHHhCCCcCCCCEeeCCCCCCcc-------------cCCcCEEEECCCCCCc
Confidence            99887532  2  67899999987642             2479999999999753

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.29  E-value=4.4e-11  Score=107.59  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--C-CeEEEEcccc
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFV  197 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~-~v~vi~gD~~  197 (371)
                      ...++.+.+...++..+.+.++++|||||||+|.++..+++.+.+|+|+|+++.+++.|+++.+..  + +++++.+|+.
T Consensus        35 ~~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  114 (204)
T 3njr_A           35 DGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP  114 (204)
T ss_dssp             SSCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CCCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh
Confidence            346788899999999999999999999999999999999999889999999999999999998654  3 7999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc--ccHHHHHHhccCCCch
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIF  244 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~--iss~il~~Ll~~g~~~  244 (371)
                      +...            ..+.+|.|+.+....  +...+...|.++|.++
T Consensus       115 ~~~~------------~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv  151 (204)
T 3njr_A          115 AALA------------DLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIV  151 (204)
T ss_dssp             GGGT------------TSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEE
T ss_pred             hhcc------------cCCCCCEEEECCcccHHHHHHHHHhcCCCcEEE
Confidence            7321            224689999886432  2233334444555443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.28  E-value=4.4e-11  Score=109.40  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhhc-CCCCcHHHHHHHHHhcCCC---ccc-------------ccCcccCCCHHHHHHHHHHhcCCCCCEEE
Q 017450           84 KGAASACIVCAR-SQDDDYHATIKALNSKGRF---PRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVL  146 (371)
Q Consensus        84 ~~~r~~mv~~~~-~~~~~~~~~~~~l~~~~~~---~~k-------------~lGQ~fl~~~~v~~~i~~~l~~~~~~~VL  146 (371)
                      ..+|..|++... +.......+.+.+......   +..             ..|+ ....+.++..+++.+...++++||
T Consensus        18 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~vL   96 (235)
T 1jg1_A           18 YEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ-TVSAPHMVAIMLEIANLKPGMNIL   96 (235)
T ss_dssp             HHHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTC-EECCHHHHHHHHHHHTCCTTCCEE
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCc-eeccHHHHHHHHHhcCCCCCCEEE
Confidence            345677887755 4455667777777654321   111             1233 567889999999999988999999


Q ss_pred             EEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          147 EIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       147 EIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      |||||+|.++..+++.+ .+|+++|+++.+++.+++++...  ++++++.+|+. .++.           ....||+|++
T Consensus        97 diG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~-----------~~~~fD~Ii~  164 (235)
T 1jg1_A           97 EVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KGFP-----------PKAPYDVIIV  164 (235)
T ss_dssp             EECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCG-----------GGCCEEEEEE
T ss_pred             EEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cCCC-----------CCCCccEEEE
Confidence            99999999999999986 89999999999999999998654  37999999982 2221           1245899998


Q ss_pred             cCCC-cccHHHHHHhccCCCc
Q 017450          224 NIPF-NISTDVIKQLLPMGDI  243 (371)
Q Consensus       224 NlPy-~iss~il~~Ll~~g~~  243 (371)
                      +.+. ++...+...|.++|.+
T Consensus       165 ~~~~~~~~~~~~~~L~pgG~l  185 (235)
T 1jg1_A          165 TAGAPKIPEPLIEQLKIGGKL  185 (235)
T ss_dssp             CSBBSSCCHHHHHTEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCCcEE
Confidence            7654 4555555555555543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.27  E-value=1.1e-11  Score=113.43  Aligned_cols=103  Identities=13%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      +.+.+.....+...+...++.+|||||||+|+++..+++  .+.+|+++|+++.+++.|++++...+   +++++.+|+.
T Consensus        53 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (232)
T 3ntv_A           53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNAL  132 (232)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGG
T ss_pred             CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            456788888888888777889999999999999999998  46799999999999999999987553   8999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                      +.....          ..+.||.|+.+.+..-...++.
T Consensus       133 ~~~~~~----------~~~~fD~V~~~~~~~~~~~~l~  160 (232)
T 3ntv_A          133 EQFENV----------NDKVYDMIFIDAAKAQSKKFFE  160 (232)
T ss_dssp             GCHHHH----------TTSCEEEEEEETTSSSHHHHHH
T ss_pred             HHHHhh----------ccCCccEEEEcCcHHHHHHHHH
Confidence            753200          1367999999876554444443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.27  E-value=2.3e-11  Score=119.62  Aligned_cols=94  Identities=18%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      ..+++.+++.|+..+ ..++.+|||+|||+|.++..++..+.  +|+|+|+|+.+++.|+++....+   +++++++|+.
T Consensus       200 a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          200 AHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             TCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            345788999999988 88889999999999999999999876  99999999999999999987654   7999999999


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      +++..            .+.+|+|++|+||..
T Consensus       279 ~~~~~------------~~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          279 QLSQY------------VDSVDFAISNLPYGL  298 (373)
T ss_dssp             GGGGT------------CSCEEEEEEECCCC-
T ss_pred             hCCcc------------cCCcCEEEECCCCCc
Confidence            87642            357999999999975

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.27  E-value=4e-11  Score=104.72  Aligned_cols=90  Identities=17%  Similarity=0.320  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--C--eEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~--v~vi~gD~~~~~~~~  203 (371)
                      ...+.+++.+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...+  +  ++++.+|+.+..   
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---  115 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc---
Confidence            678888888888888999999999999999999988899999999999999999986543  4  999999998742   


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                                ....+|+|++|.||+..
T Consensus       116 ----------~~~~~D~v~~~~~~~~~  132 (194)
T 1dus_A          116 ----------KDRKYNKIITNPPIRAG  132 (194)
T ss_dssp             ----------TTSCEEEEEECCCSTTC
T ss_pred             ----------ccCCceEEEECCCcccc
Confidence                      23579999999999763

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.27  E-value=1.7e-11  Score=105.37  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=78.0

Q ss_pred             cCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccc
Q 017450          123 YMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~  199 (371)
                      ..+...+.+.+++.+..  .++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+ +++++++|+.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  100 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF  100 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHH
Confidence            44556777777777653  267899999999999999999998889999999999999999987555 899999999874


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ...     ..   ...+.+|+|++|+||.
T Consensus       101 ~~~-----~~---~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A          101 LPE-----AK---AQGERFTVAFMAPPYA  121 (171)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCTT
T ss_pred             HHh-----hh---ccCCceEEEEECCCCc
Confidence            211     00   1124799999999985

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.27  E-value=1.4e-11  Score=114.66  Aligned_cols=88  Identities=15%  Similarity=0.254  Sum_probs=71.4

Q ss_pred             HHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhh
Q 017450          133 LAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       133 i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +...+... ++++|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..++   +++++++|+.++...     
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-----  114 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-----  114 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-----
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-----
Confidence            44455666 789999999999999999999865 99999999999999999987553   699999999886421     


Q ss_pred             HHHhhccCCCeeEEEecCCCccc
Q 017450          208 LFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                           ...+.||+|++|+||...
T Consensus       115 -----~~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          115 -----IPKERADIVTCNPPYFAT  132 (259)
T ss_dssp             -----SCTTCEEEEEECCCC---
T ss_pred             -----hccCCccEEEECCCCCCC
Confidence                 124679999999999654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.26  E-value=7.6e-11  Score=102.11  Aligned_cols=102  Identities=16%  Similarity=0.230  Sum_probs=85.4

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~  200 (371)
                      ....+.+...+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...  ++++++.+|+.+ .
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V   95 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence            5777889999999999888999999999999999999997789999999999999999998755  479999999987 3


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL  238 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll  238 (371)
                      +.            .+.+|+|+++.+ .....++..+.
T Consensus        96 ~~------------~~~~D~i~~~~~-~~~~~~l~~~~  120 (183)
T 2yxd_A           96 LD------------KLEFNKAFIGGT-KNIEKIIEILD  120 (183)
T ss_dssp             GG------------GCCCSEEEECSC-SCHHHHHHHHH
T ss_pred             cc------------CCCCcEEEECCc-ccHHHHHHHHh
Confidence            32            257999999988 44455555443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.26  E-value=1.3e-11  Score=112.92  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccch
Q 017450          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (371)
Q Consensus       125 ~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~  200 (371)
                      .+..+...++..+. ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...+   +++++++|+.++.
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA  140 (241)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG
T ss_pred             CHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc
Confidence            44555666665543 2368899999999999999999999999999999999999999987554   7999999998864


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~  232 (371)
                      .             ...||+|++|+||+....
T Consensus       141 ~-------------~~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          141 S-------------FLKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             G-------------GCCCSEEEECCCCSSGGG
T ss_pred             c-------------cCCCCEEEECCCcCCcch
Confidence            2             257999999999976543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.26  E-value=2.6e-11  Score=118.08  Aligned_cols=95  Identities=21%  Similarity=0.220  Sum_probs=83.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~  197 (371)
                      ..+.+.++..++..+...++.+|||+|||+|.++..++..+   .+|+|+|+|+.+++.|++++...+  +++++++|+.
T Consensus       185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~  264 (354)
T 3tma_A          185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR  264 (354)
T ss_dssp             CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred             CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence            56778899999999999999999999999999999999965   799999999999999999988665  7999999999


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      +++..            .+.+|+|++|+||..
T Consensus       265 ~~~~~------------~~~~D~Ii~npPyg~  284 (354)
T 3tma_A          265 HLPRF------------FPEVDRILANPPHGL  284 (354)
T ss_dssp             GGGGT------------CCCCSEEEECCCSCC
T ss_pred             hCccc------------cCCCCEEEECCCCcC
Confidence            87542            245799999999965

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.25  E-value=3.8e-11  Score=109.14  Aligned_cols=144  Identities=18%  Similarity=0.265  Sum_probs=104.9

Q ss_pred             HHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc---------cccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 017450           87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR---------KSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (371)
Q Consensus        87 r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~---------k~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G  151 (371)
                      +..|++.+.+.+ ....++.++|......   +.         ...|| .+..+.+...+++.+  .+.++.+|||||||
T Consensus        16 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G   94 (227)
T 1r18_A           16 NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGV-TISAPHMHAFALEYLRDHLKPGARILDVGSG   94 (227)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcccccCCCcccCCCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            456777766554 4577778887754321   11         12344 677899999999988  47788999999999


Q ss_pred             ccHHHHHHHHh-C-------CeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          152 TGSLTNVLLNA-G-------ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       152 ~G~lt~~La~~-~-------~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      +|+++..+++. +       .+|+++|+++.+++.+++++..       .++++++.+|+.+. +.           ...
T Consensus        95 ~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~-----------~~~  162 (227)
T 1r18_A           95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YP-----------PNA  162 (227)
T ss_dssp             TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CG-----------GGC
T ss_pred             ccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-CC-----------cCC
Confidence            99999999985 4       4999999999999999998764       34899999999872 21           125


Q ss_pred             CeeEEEecCCC-cccHHHHHHhccCCCc
Q 017450          217 GFAKVVANIPF-NISTDVIKQLLPMGDI  243 (371)
Q Consensus       217 ~~d~VVaNlPy-~iss~il~~Ll~~g~~  243 (371)
                      .||+|+.+.+. ++...+...|.++|.+
T Consensus       163 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l  190 (227)
T 1r18_A          163 PYNAIHVGAAAPDTPTELINQLASGGRL  190 (227)
T ss_dssp             SEEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred             CccEEEECCchHHHHHHHHHHhcCCCEE
Confidence            79999988765 4445555555555543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.25  E-value=6.4e-11  Score=105.64  Aligned_cols=107  Identities=15%  Similarity=0.237  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~  200 (371)
                      +.+.+...++..+.+.++++|||||||+|.++..+++.+  .+|+++|+++.+++.|++++...  ++++++.+|+.+..
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  103 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL  103 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence            788888999999999999999999999999999999986  79999999999999999988643  48999999997642


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH----HhccCCCc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK----QLLPMGDI  243 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~----~Ll~~g~~  243 (371)
                      .            ..+.+|.|+.+.++.....++.    .|.++|.+
T Consensus       104 ~------------~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l  138 (204)
T 3e05_A          104 D------------DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVI  138 (204)
T ss_dssp             T------------TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEE
T ss_pred             h------------cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence            1            1256999999987654444443    34455544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.25  E-value=1e-11  Score=108.44  Aligned_cols=85  Identities=24%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             CCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh
Q 017450          124 MLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~  201 (371)
                      +++......+++.+..  .++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++.       .++++++++|+.+. +
T Consensus         4 ~~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~-~   74 (170)
T 3q87_B            4 YEPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HRGGNLVRADLLCS-I   74 (170)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CSSSCEEECSTTTT-B
T ss_pred             cCcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------ccCCeEEECChhhh-c
Confidence            3444455556666554  567899999999999999999999 99999999999988       34789999999872 2


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                                  ..+.||.|++|+||..
T Consensus        75 ------------~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           75 ------------NQESVDVVVFNPPYVP   90 (170)
T ss_dssp             ------------CGGGCSEEEECCCCBT
T ss_pred             ------------ccCCCCEEEECCCCcc
Confidence                        1257999999999974

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.23  E-value=1.9e-11  Score=109.74  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchh
Q 017450          126 NSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~  201 (371)
                      ...+.+.+++.+... ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+  +++++++|+.+...
T Consensus        38 ~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~  117 (202)
T 2fpo_A           38 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA  117 (202)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh
Confidence            345555566555432 67899999999999999988876 489999999999999999987653  89999999987421


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                                 .....||+|++|+||.
T Consensus       118 -----------~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A          118 -----------QKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             -----------SCCCCEEEEEECCSSS
T ss_pred             -----------hcCCCCCEEEECCCCC
Confidence                       1235799999999986

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.23  E-value=3.7e-11  Score=107.85  Aligned_cols=87  Identities=17%  Similarity=0.078  Sum_probs=71.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--------------CCCeEEEEcc
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKVLQED  195 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--------------~~~v~vi~gD  195 (371)
                      +..++..+.+.++.+|||+|||+|..+..|++.|.+|+|||+++.|++.|+++...              .++++++++|
T Consensus        11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   90 (203)
T 1pjz_A           11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   90 (203)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence            33445566677889999999999999999999999999999999999999988642              3589999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.++++.+           .+.||.|+++..+
T Consensus        91 ~~~l~~~~-----------~~~fD~v~~~~~l  111 (203)
T 1pjz_A           91 FFALTARD-----------IGHCAAFYDRAAM  111 (203)
T ss_dssp             CSSSTHHH-----------HHSEEEEEEESCG
T ss_pred             cccCCccc-----------CCCEEEEEECcch
Confidence            99986531           1469999986554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.23  E-value=3e-11  Score=106.94  Aligned_cols=83  Identities=16%  Similarity=0.292  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhh
Q 017450          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +....+.++++|||+|||+|.++..+++.   +.+|+|+|+++.+++.|++++...   ++++++++|+.+++..     
T Consensus        15 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----   89 (197)
T 3eey_A           15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-----   89 (197)
T ss_dssp             HHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-----
T ss_pred             HHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-----
Confidence            33445678899999999999999999987   259999999999999999998764   4799999999876421     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                            ..+.+|.|++|+||
T Consensus        90 ------~~~~fD~v~~~~~~  103 (197)
T 3eey_A           90 ------IDCPVKAVMFNLGY  103 (197)
T ss_dssp             ------CCSCEEEEEEEESB
T ss_pred             ------ccCCceEEEEcCCc
Confidence                  23679999999988

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.23  E-value=1.3e-11  Score=122.28  Aligned_cols=95  Identities=22%  Similarity=0.321  Sum_probs=75.8

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLK  190 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~  190 (371)
                      ..++..|| |.+++.+++.|++.+...++.+|||+|||+|.++..+++.   +.+++|+|+|+.+++.|       .+++
T Consensus        13 ~~~~~~g~-~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~   84 (421)
T 2ih2_A           13 SAPRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAE   84 (421)
T ss_dssp             ---------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEE
T ss_pred             hhcccCce-EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCc
Confidence            45677888 8899999999999998766779999999999999999985   46999999999998876       4789


Q ss_pred             EEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       191 vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++++|+.+..             ..+.||+|++|+||..
T Consensus        85 ~~~~D~~~~~-------------~~~~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           85 GILADFLLWE-------------PGEAFDLILGNPPYGI  110 (421)
T ss_dssp             EEESCGGGCC-------------CSSCEEEEEECCCCCC
T ss_pred             EEeCChhhcC-------------ccCCCCEEEECcCccC
Confidence            9999998763             2357999999999953

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.23  E-value=1.6e-11  Score=110.14  Aligned_cols=92  Identities=17%  Similarity=0.243  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchh
Q 017450          128 EINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHI  201 (371)
Q Consensus       128 ~v~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~  201 (371)
                      .+.+.+++.+... ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...    ++++++.+|+.++..
T Consensus        39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  118 (201)
T 2ift_A           39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK  118 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH
Confidence            3445555554432 67899999999999999988876 48999999999999999998654    379999999987532


Q ss_pred             hhhhhhHHHhhccCCC-eeEEEecCCCcc
Q 017450          202 RSHMLSLFERRKSSSG-FAKVVANIPFNI  229 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~-~d~VVaNlPy~i  229 (371)
                      .          ..... ||+|++|+||..
T Consensus       119 ~----------~~~~~~fD~I~~~~~~~~  137 (201)
T 2ift_A          119 Q----------PQNQPHFDVVFLDPPFHF  137 (201)
T ss_dssp             S----------CCSSCCEEEEEECCCSSS
T ss_pred             h----------hccCCCCCEEEECCCCCC
Confidence            1          01357 999999999863

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.22  E-value=4.7e-11  Score=111.89  Aligned_cols=75  Identities=23%  Similarity=0.359  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ++++.+|||||||+|.++..|++.    +++|+|||+++.|++.|++++...+   +++++++|+.++++          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            568899999999999999999985    5689999999999999999987543   79999999988753          


Q ss_pred             hccCCCeeEEEecCCC
Q 017450          212 RKSSSGFAKVVANIPF  227 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy  227 (371)
                          +.+|+|++|.-.
T Consensus       138 ----~~~d~v~~~~~l  149 (261)
T 4gek_A          138 ----ENASMVVLNFTL  149 (261)
T ss_dssp             ----CSEEEEEEESCG
T ss_pred             ----cccccceeeeee
Confidence                458999987543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.22  E-value=4.3e-11  Score=104.53  Aligned_cols=97  Identities=16%  Similarity=0.345  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          124 MLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       124 l~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      .+...+++.+++.+. ..++++|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...   ++++++++|+.+
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  105 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  105 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence            455677778887774 4578899999999999999988876 59999999999999999998653   379999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ....     +.   .....||+|++|+||.
T Consensus       106 ~~~~-----~~---~~~~~fD~i~~~~~~~  127 (187)
T 2fhp_A          106 ALEQ-----FY---EEKLQFDLVLLDPPYA  127 (187)
T ss_dssp             HHHH-----HH---HTTCCEEEEEECCCGG
T ss_pred             HHHH-----HH---hcCCCCCEEEECCCCC
Confidence            4321     00   0136799999999986

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.22  E-value=4.4e-11  Score=119.96  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~  205 (371)
                      .+++.+++.+...++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++  +++++++|+.+...... 
T Consensus       273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~-  351 (433)
T 1uwv_A          273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP-  351 (433)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh-
Confidence            356666777777788999999999999999999998899999999999999999987553  89999999987321000 


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcccHHHHHHhcc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~  239 (371)
                             .....||+|++|+||....+++..+..
T Consensus       352 -------~~~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          352 -------WAKNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             -------GGTTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             -------hhcCCCCEEEECCCCccHHHHHHHHHh
Confidence                   012469999999999877788777754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.22  E-value=6.2e-12  Score=111.90  Aligned_cols=95  Identities=15%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             HHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~  204 (371)
                      +++.+++.+.. .++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.+++++...+ +++++++|+.+ .+.+.
T Consensus        17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~   95 (215)
T 4dzr_A           17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIER   95 (215)
T ss_dssp             HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHH
T ss_pred             HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhh
Confidence            45556666655 67889999999999999999998  5599999999999999999987655 68888899887 32210


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      .       ...+.+|+|++|+||....
T Consensus        96 ~-------~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           96 A-------ERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             H-------HTTCCBSEEEECCCCCC--
T ss_pred             h-------hccCcccEEEECCCCCCCc
Confidence            0       0236799999999997654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.20  E-value=6.4e-11  Score=122.03  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=81.4

Q ss_pred             cccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--------------------CCeEEEEeCCHH
Q 017450          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQH  174 (371)
Q Consensus       115 ~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--------------------~~~V~aIE~d~~  174 (371)
                      .++..|| |.+++.+++.|++.+.+.++.+|||++||+|.+...+++.                    ..+++|+|+|+.
T Consensus       144 ~~~~~G~-fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~  222 (541)
T 2ar0_A          144 TKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  222 (541)
T ss_dssp             ------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             ccccCCe-eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence            3567888 7899999999999999888999999999999998877753                    137999999999


Q ss_pred             HHHHHHHHhccCC--C-----eEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          175 MVGLVRERFASID--Q-----LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       175 ~i~~a~~~~~~~~--~-----v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ++..|+.++.-.+  +     .++.++|++..+..           ....||+|++||||...
T Consensus       223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~-----------~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          223 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-----------NLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH-----------TSCCEEEEEECCCCTTC
T ss_pred             HHHHHHHHHHHhCCCccccccCCeEeCCCcccccc-----------cccCCeEEEECCCcccc
Confidence            9999998875332  3     78999999875431           23579999999999654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.19  E-value=4.5e-11  Score=113.36  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      .+++.++..+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++...++   +++++++|+.+..   
T Consensus       110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---  186 (284)
T 1nv8_A          110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---  186 (284)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---
Confidence            45556666555446779999999999999999998 7899999999999999999987653   4999999998731   


Q ss_pred             hhhhHHHhhccCCCe---eEEEecCCCcccH
Q 017450          204 HMLSLFERRKSSSGF---AKVVANIPFNIST  231 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~---d~VVaNlPy~iss  231 (371)
                                 .+.|   |+|++|+||.-..
T Consensus       187 -----------~~~f~~~D~IvsnPPyi~~~  206 (284)
T 1nv8_A          187 -----------KEKFASIEMILSNPPYVKSS  206 (284)
T ss_dssp             -----------GGGTTTCCEEEECCCCBCGG
T ss_pred             -----------ccccCCCCEEEEcCCCCCcc
Confidence                       1246   9999999997544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.19  E-value=8.8e-11  Score=101.71  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=83.2

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      .++.+.+...++..+...++++|||||||+|.++..+++.  +.+|+++|+++.+++.+++++...+   ++ ++++|+.
T Consensus         7 ~~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~   85 (178)
T 3hm2_A            7 QLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAP   85 (178)
T ss_dssp             CSHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTT
T ss_pred             cccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchH
Confidence            3456778888899999889999999999999999999987  6799999999999999999987543   68 8889986


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcc---cHHHHHHhccCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI---STDVIKQLLPMGDI  243 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i---ss~il~~Ll~~g~~  243 (371)
                      + .+.          ...+.||+|+++.+++.   ...+...|.++|.+
T Consensus        86 ~-~~~----------~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l  123 (178)
T 3hm2_A           86 R-AFD----------DVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRL  123 (178)
T ss_dssp             G-GGG----------GCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEE
T ss_pred             h-hhh----------ccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEE
Confidence            5 221          11267999999877654   33344444555544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.19  E-value=8.4e-11  Score=112.83  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHhccC--CCeEEEEccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~  198 (371)
                      ...+.+...+++.+...++++|||||||+|.++..+++.+.   +|+|+|+++.+++.|++++...  ++++++.+|+.+
T Consensus        58 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (317)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             ccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence            45778999999999999999999999999999999998754   4999999999999999998654  379999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCc-ccHHHHHHhccCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDI  243 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~-iss~il~~Ll~~g~~  243 (371)
                      ....            .+.||+|+++.+.. +...+...|.++|.+
T Consensus       138 ~~~~------------~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~l  171 (317)
T 1dl5_A          138 GVPE------------FSPYDVIFVTVGVDEVPETWFTQLKEGGRV  171 (317)
T ss_dssp             CCGG------------GCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred             cccc------------CCCeEEEEEcCCHHHHHHHHHHhcCCCcEE
Confidence            5321            25799999987763 445555555555543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.18  E-value=6.6e-11  Score=117.27  Aligned_cols=95  Identities=13%  Similarity=0.149  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhc---------c--CCCeEE
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA---------S--IDQLKV  191 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~---------~--~~~v~v  191 (371)
                      +.+..+..+++.+.+.++++|||||||+|.++..++.. ++ +|+|||+++.+++.|+++.+         .  .+++++
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            45788999999999999999999999999999999875 55 59999999999999987542         1  258999


Q ss_pred             EEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++||+.+.++.+.          .+.+|+|++|.+|..
T Consensus       237 i~GD~~~lp~~d~----------~~~aDVVf~Nn~~F~  264 (438)
T 3uwp_A          237 ERGDFLSEEWRER----------IANTSVIFVNNFAFG  264 (438)
T ss_dssp             EECCTTSHHHHHH----------HHTCSEEEECCTTCC
T ss_pred             EECcccCCccccc----------cCCccEEEEcccccC
Confidence            9999999876421          135899999988754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.18  E-value=7.9e-11  Score=108.49  Aligned_cols=90  Identities=18%  Similarity=0.279  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~  205 (371)
                      ...+..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....++++++.+|+.+.++    
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----  116 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF----  116 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCC----
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCC----
Confidence            456778888888888999999999999999999997 889999999999999999998765789999999988754    


Q ss_pred             hhHHHhhccCCCeeEEEecCCCc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                              ..+.||+|+++..++
T Consensus       117 --------~~~~fD~v~~~~~l~  131 (266)
T 3ujc_A          117 --------PENNFDLIYSRDAIL  131 (266)
T ss_dssp             --------CTTCEEEEEEESCGG
T ss_pred             --------CCCcEEEEeHHHHHH
Confidence                    236799999875543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.17  E-value=6.6e-11  Score=110.49  Aligned_cols=93  Identities=23%  Similarity=0.290  Sum_probs=70.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc---CC---CeEEEEcccccchhhhh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS---ID---QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~---~~---~v~vi~gD~~~~~~~~~  204 (371)
                      +...+...++.+|||+|||+|.++..+++..  .+|+|||+++.+++.|++++..   ++   +++++++|+.+......
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence            3444556678899999999999999999984  6899999999999999999876   43   59999999988632100


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCccc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                           ........||+|++|+||...
T Consensus       108 -----~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          108 -----EAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             -----HTTCCTTCEEEEEECCCC---
T ss_pred             -----hhccCCCCcCEEEECCCCcCC
Confidence                 000123679999999999765

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.17  E-value=5.7e-10  Score=114.68  Aligned_cols=184  Identities=14%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             cccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---------------CCeEEEEeCCHHHHHHH
Q 017450          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLV  179 (371)
Q Consensus       115 ~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---------------~~~V~aIE~d~~~i~~a  179 (371)
                      ..+..|| |.|++.+++.|++.+.+.++++|+|..||+|.+.....+.               ...++|+|+++.++..|
T Consensus       192 ~~g~~Gq-fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          192 AAGDSGE-FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             SSSSCCC-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             hcCcCce-ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            3446799 8899999999999999999999999999999987666542               23699999999999999


Q ss_pred             HHHhc--cCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc--HHHHHHhccCCCchhHHHHHhhhhH
Q 017450          180 RERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIFSEVVLLLQEET  255 (371)
Q Consensus       180 ~~~~~--~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is--s~il~~Ll~~g~~~~~~~lmvQke~  255 (371)
                      +-++-  ..+..++.++|.+..+..+.        .....||+|++||||...  .............-..-...+|+- 
T Consensus       271 ~mNl~lhg~~~~~I~~~dtL~~~~~~~--------~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~-  341 (530)
T 3ufb_A          271 QMNLLLHGLEYPRIDPENSLRFPLREM--------GDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLI-  341 (530)
T ss_dssp             HHHHHHHTCSCCEEECSCTTCSCGGGC--------CGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHH-
T ss_pred             HHHHHhcCCccccccccccccCchhhh--------cccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHH-
Confidence            88753  22356788999987654321        123569999999999643  222222111100000111111211 


Q ss_pred             HhhhccCC-CCCCCCcceeeeee---------------e---eccceEEEEeCCCCcccCCCCceEEEEEEEc
Q 017450          256 ALRLVEPS-LRTSEYRPINIFVN---------------F---YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK  309 (371)
Q Consensus       256 a~rl~~a~-pg~k~Yg~Lsv~~q---------------~---~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~  309 (371)
                       .+..... -..+.=|++.+.+-               +   -+.++.+..+|.+.|+|.-.|.++|+.|++.
T Consensus       342 -l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~  413 (530)
T 3ufb_A          342 -MRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRS  413 (530)
T ss_dssp             -HHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESS
T ss_pred             -HHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECC
Confidence             1111000 00001122221110               0   1334667899999999877899999999754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.17  E-value=4e-10  Score=98.12  Aligned_cols=100  Identities=15%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      .+...+...++..+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...   ++++++++|+.+ .
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence            677888999999999889999999999999999999998889999999999999999987654   478999999876 2


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                      +.           ..+.+|+|+++.++.-...++.
T Consensus        95 ~~-----------~~~~~D~v~~~~~~~~~~~~l~  118 (192)
T 1l3i_A           95 LC-----------KIPDIDIAVVGGSGGELQEILR  118 (192)
T ss_dssp             HT-----------TSCCEEEEEESCCTTCHHHHHH
T ss_pred             cc-----------cCCCCCEEEECCchHHHHHHHH
Confidence            21           1247999999988655555554

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.17  E-value=1.8e-10  Score=107.32  Aligned_cols=92  Identities=12%  Similarity=0.021  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc-------------------c
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA-------------------S  185 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~-------------------~  185 (371)
                      .++.+.+.+.......++.+|||+|||+|..+..|++.|.+|+|||+++.|++.|+++..                   .
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            445566665555555578899999999999999999999999999999999999987763                   1


Q ss_pred             CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       186 ~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      .++++++++|+.+++..           ..+.||.|+++..+
T Consensus       132 ~~~i~~~~~D~~~l~~~-----------~~~~FD~V~~~~~l  162 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRA-----------NIGKFDRIWDRGAL  162 (252)
T ss_dssp             TSSEEEEESCTTTGGGG-----------CCCCEEEEEESSST
T ss_pred             CCceEEEECccccCCcc-----------cCCCEEEEEEhhhh
Confidence            25899999999987642           12679999987554

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.17  E-value=6.2e-11  Score=115.03  Aligned_cols=112  Identities=14%  Similarity=0.140  Sum_probs=84.1

Q ss_pred             HHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHhC-------CeEEEEeC
Q 017450          103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEK  171 (371)
Q Consensus       103 ~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l----~~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~aIE~  171 (371)
                      ...+.+...........|+ +.++..++..|...+    ...++.+|||+|||+|.++..+++..       .+++|+|+
T Consensus        89 ~~ye~~~~~~~~~~~~~g~-~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi  167 (344)
T 2f8l_A           89 KGLQLALLKGMKHGIQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDV  167 (344)
T ss_dssp             HHHHHHHHHHTSSSCCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred             HHHHHHHHHHhhcccccCc-CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEEC
Confidence            3444443333345566788 458888876655544    34567899999999999999988753       68999999


Q ss_pred             CHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          172 DQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       172 d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      |+.+++.|+.++...+ +++++++|++...             ....+|+|++|+||.
T Consensus       168 ~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~-------------~~~~fD~Ii~NPPfg  212 (344)
T 2f8l_A          168 DDLLISLALVGADLQRQKMTLLHQDGLANL-------------LVDPVDVVISDLPVG  212 (344)
T ss_dssp             CHHHHHHHHHHHHHHTCCCEEEESCTTSCC-------------CCCCEEEEEEECCCS
T ss_pred             CHHHHHHHHHHHHhCCCCceEEECCCCCcc-------------ccCCccEEEECCCCC
Confidence            9999999999875333 6899999987742             235799999999974

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.16  E-value=7.5e-11  Score=116.19  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-----CeEEEEcccccchhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIR  202 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-----~v~vi~gD~~~~~~~  202 (371)
                      .+.+++.+...++.+|||+|||+|.++..+++.  +.+|++||+|+.+++.+++++..++     +++++.+|+.+. + 
T Consensus       211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~-  288 (375)
T 4dcm_A          211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V-  288 (375)
T ss_dssp             HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-C-
T ss_pred             HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-C-
Confidence            445677777777789999999999999999998  5799999999999999999987543     588899999873 1 


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                                 ..+.||.|++|+||+.
T Consensus       289 -----------~~~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          289 -----------EPFRFNAVLCNPPFHQ  304 (375)
T ss_dssp             -----------CTTCEEEEEECCCC--
T ss_pred             -----------CCCCeeEEEECCCccc
Confidence                       2367999999999974

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.16  E-value=1.6e-10  Score=106.57  Aligned_cols=106  Identities=24%  Similarity=0.364  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--C-CeEEEEccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVK  198 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~-~v~vi~gD~~~  198 (371)
                      +.+..+..++..+...++++|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...  + +++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            44666778899999999999999999999999999998   679999999999999999998643  2 49999999986


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCc--ccHHHHHHhccCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDI  243 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~--iss~il~~Ll~~g~~  243 (371)
                      . +            ....+|.|++|+|..  ....+...|.++|.+
T Consensus       157 ~-~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  190 (255)
T 3mb5_A          157 G-I------------EEENVDHVILDLPQPERVVEHAAKALKPGGFF  190 (255)
T ss_dssp             C-C------------CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEE
T ss_pred             c-c------------CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEE
Confidence            4 1            235699999999864  445555556666554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.15  E-value=7.4e-11  Score=105.80  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .....+...+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...++++++.+|+.+.+.      
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------  111 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFST------  111 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCC------
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCC------
Confidence            44455555666677889999999999999999999889999999999999999999877799999999988752      


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                             .+.||+|+++..+
T Consensus       112 -------~~~fD~v~~~~~l  124 (216)
T 3ofk_A          112 -------AELFDLIVVAEVL  124 (216)
T ss_dssp             -------SCCEEEEEEESCG
T ss_pred             -------CCCccEEEEccHH
Confidence                   3679999998554

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.15  E-value=1.1e-10  Score=108.02  Aligned_cols=86  Identities=20%  Similarity=0.276  Sum_probs=72.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +..+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.|++.++++....  ++++++.+|+.++++.     
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~-----  100 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT-----  100 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC-----
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC-----
Confidence            456777777788999999999999999999998889999999999999999987644  4799999999887642     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                             .+.||+|+++...
T Consensus       101 -------~~~fD~V~~~~~l  113 (260)
T 1vl5_A          101 -------DERFHIVTCRIAA  113 (260)
T ss_dssp             -------TTCEEEEEEESCG
T ss_pred             -------CCCEEEEEEhhhh
Confidence                   3679999998554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.15  E-value=3.3e-10  Score=104.55  Aligned_cols=83  Identities=18%  Similarity=0.194  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc-
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS-  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~-  214 (371)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|+++....+   +++++++|+.+.-....        .. 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--------~~~  136 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL--------KEE  136 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTS--------TTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhh--------hcc
Confidence            4679999999999999999876  6899999999999999999987543   59999999876211000        01 


Q ss_pred             -CCCeeEEEecCCCcccH
Q 017450          215 -SSGFAKVVANIPFNIST  231 (371)
Q Consensus       215 -~~~~d~VVaNlPy~iss  231 (371)
                       ...||+|++|+||....
T Consensus       137 ~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          137 SEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CSCCBSEEEECCCCC---
T ss_pred             cCCcccEEEECCCCccCc
Confidence             14799999999997543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.15  E-value=1.9e-10  Score=104.04  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=85.1

Q ss_pred             cCCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhcc-------CCCeE
Q 017450          123 YMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------IDQLK  190 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~-------~~~v~  190 (371)
                      .+.++.+...+++.+.  ..++.+|||||||+|.++..+++. +  .+|+++|+++.+++.+++++..       .++++
T Consensus        57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~  136 (226)
T 1i1n_A           57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  136 (226)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence            5778888889988886  778899999999999999999986 4  5999999999999999998765       34899


Q ss_pred             EEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC-cccHHHHHHhccCCC
Q 017450          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGD  242 (371)
Q Consensus       191 vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy-~iss~il~~Ll~~g~  242 (371)
                      ++.+|+.+...            ..+.||+|+.+.++ .+...+...|.++|.
T Consensus       137 ~~~~d~~~~~~------------~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~  177 (226)
T 1i1n_A          137 LVVGDGRMGYA------------EEAPYDAIHVGAAAPVVPQALIDQLKPGGR  177 (226)
T ss_dssp             EEESCGGGCCG------------GGCCEEEEEECSBBSSCCHHHHHTEEEEEE
T ss_pred             EEECCcccCcc------------cCCCcCEEEECCchHHHHHHHHHhcCCCcE
Confidence            99999876432            12569999988775 344455544445443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.15  E-value=1.5e-10  Score=108.52  Aligned_cols=90  Identities=21%  Similarity=0.399  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~  203 (371)
                      .+++.+++.+. .++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.++++....  ++++++++|+.+..   
T Consensus        97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---  172 (276)
T 2b3t_A           97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---  172 (276)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---
T ss_pred             HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---
Confidence            35566666665 56789999999999999999976  679999999999999999998644  37999999997641   


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                                ..+.||+|++|+||....
T Consensus       173 ----------~~~~fD~Iv~npPy~~~~  190 (276)
T 2b3t_A          173 ----------AGQQFAMIVSNPPYIDEQ  190 (276)
T ss_dssp             ----------TTCCEEEEEECCCCBCTT
T ss_pred             ----------ccCCccEEEECCCCCCcc
Confidence                      135799999999996543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.14  E-value=1.4e-10  Score=114.53  Aligned_cols=89  Identities=26%  Similarity=0.394  Sum_probs=73.5

Q ss_pred             HHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhh
Q 017450          129 INDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       129 v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~  205 (371)
                      +++.+...+.  ..++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++..++ +++++.+|+.+...    
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~----  294 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT----  294 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC----
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc----
Confidence            3444444432  3467899999999999999999999999999999999999999988665 68999999988643    


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                              ..+.||.|++|+||+.
T Consensus       295 --------~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          295 --------EEARFDIIVTNPPFHV  310 (381)
T ss_dssp             --------TTCCEEEEEECCCCCT
T ss_pred             --------cCCCeEEEEECCchhh
Confidence                    2267999999999975

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.14  E-value=6.2e-11  Score=111.23  Aligned_cols=91  Identities=20%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      +..++.++..+.+.++.+|||||||+|.++..+++.+.+|+|||+++.|++.|+++....    ++.+|+.+++.... .
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~-~  105 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIP-K  105 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCC-G
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccc-c
Confidence            456788888898889999999999999999999999999999999999999999998643    34556655543000 0


Q ss_pred             hHHHhhccCCCeeEEEecCCCc
Q 017450          207 SLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            ...+.||.|++|..++
T Consensus       106 ------~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A          106 ------ELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             ------GGTTCCSEEEEESCGG
T ss_pred             ------ccCCCccEEEEhhhhH
Confidence                  0135799999987653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.14  E-value=1.9e-10  Score=102.45  Aligned_cols=83  Identities=24%  Similarity=0.292  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ..++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|++++...+  +++++.+|+.+..              .
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------------~  123 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------------D  123 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------------C
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------------C
Confidence            45788999999999999999998865 99999999999999999987543  5999999997642              3


Q ss_pred             CCeeEEEecCCCcccHHHHH
Q 017450          216 SGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       216 ~~~d~VVaNlPy~iss~il~  235 (371)
                      +.+|+|++|.++.....++.
T Consensus       124 ~~fD~i~~~~~~~~~~~~l~  143 (205)
T 3grz_A          124 GKFDLIVANILAEILLDLIP  143 (205)
T ss_dssp             SCEEEEEEESCHHHHHHHGG
T ss_pred             CCceEEEECCcHHHHHHHHH
Confidence            67999999998765444443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.13  E-value=3.2e-10  Score=107.48  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~  204 (371)
                      .++.++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....+   +++++.+|+.++     
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----  134 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----  134 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----
Confidence            4566778888889999999999999999999998 8999999999999999999987643   799999999775     


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                .+.||+|+++..+
T Consensus       135 ----------~~~fD~v~~~~~~  147 (302)
T 3hem_A          135 ----------DEPVDRIVSLGAF  147 (302)
T ss_dssp             ----------CCCCSEEEEESCG
T ss_pred             ----------CCCccEEEEcchH
Confidence                      2579999988654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.11  E-value=1.9e-10  Score=108.14  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--Ce
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QL  189 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v  189 (371)
                      ......+..|..+......+.......++++|||+|||+|.++..++..+  .+|+|+|+++.+++.|+++.+.++  ++
T Consensus        92 ~f~~~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~  171 (272)
T 3a27_A           92 LFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNV  171 (272)
T ss_dssp             EEEEETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSE
T ss_pred             EEEEechhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE
Confidence            33344455556666555555555567788999999999999999999984  499999999999999999987653  78


Q ss_pred             EEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       190 ~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +++.+|+.+.+.             .+.+|+|++|+|+.
T Consensus       172 ~~~~~d~~~~~~-------------~~~~D~Vi~d~p~~  197 (272)
T 3a27_A          172 IPILADNRDVEL-------------KDVADRVIMGYVHK  197 (272)
T ss_dssp             EEEESCGGGCCC-------------TTCEEEEEECCCSS
T ss_pred             EEEECChHHcCc-------------cCCceEEEECCccc
Confidence            999999988621             25699999999973

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.11  E-value=3.2e-10  Score=112.35  Aligned_cols=95  Identities=12%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---------------------------------------  163 (371)
                      -.+.+.+++.|+..+...++..|||++||+|.+++.++..+                                       
T Consensus       183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            35678899999999999899999999999999998888753                                       


Q ss_pred             -CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          164 -ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       164 -~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                       .+|+|+|+|+.+++.|++|....+   +++++++|+.+++.             ...+|+||+|+||...
T Consensus       263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------------~~~fD~Iv~NPPYg~r  320 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------------EDEYGVVVANPPYGER  320 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------------CCCSCEEEECCCCCCS
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------------CCCCCEEEECCCCccc
Confidence             349999999999999999987654   59999999998743             2579999999999653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.10  E-value=2.3e-10  Score=106.38  Aligned_cols=83  Identities=19%  Similarity=0.330  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ..++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++...++ .++++.+|+.+. +            ..+.
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~------------~~~~  184 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-L------------PFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-G------------GGCC
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-C------------cCCC
Confidence            4678899999999999999999988899999999999999999987654 388999998763 1            1257


Q ss_pred             eeEEEecCCCcccHHHH
Q 017450          218 FAKVVANIPFNISTDVI  234 (371)
Q Consensus       218 ~d~VVaNlPy~iss~il  234 (371)
                      ||+|++|.+++....++
T Consensus       185 fD~Vv~n~~~~~~~~~l  201 (254)
T 2nxc_A          185 FDLLVANLYAELHAALA  201 (254)
T ss_dssp             EEEEEEECCHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHH
Confidence            99999998765444333

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.10  E-value=3.7e-10  Score=102.88  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      +++++.....+...+...++.+|||||||+|.++..+++.  +.+|+++|+++.+++.|++++...+   +++++.+|+.
T Consensus        36 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            5788889888888888778899999999999999999997  6799999999999999999987543   6999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                      +.....         ...+.||+|+.+.+......++.
T Consensus       116 ~~~~~~---------~~~~~fD~I~~~~~~~~~~~~l~  144 (233)
T 2gpy_A          116 QLGEKL---------ELYPLFDVLFIDAAKGQYRRFFD  144 (233)
T ss_dssp             GSHHHH---------TTSCCEEEEEEEGGGSCHHHHHH
T ss_pred             HHHHhc---------ccCCCccEEEECCCHHHHHHHHH
Confidence            742110         01357999999988654444444

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.10  E-value=5.7e-10  Score=102.48  Aligned_cols=90  Identities=13%  Similarity=0.224  Sum_probs=76.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~  199 (371)
                      ...+..++.++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.++
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   98 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence            345678888999998889999999999999999999987 779999999999999999988654   3799999999886


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      ++             .+.||+|+++-.
T Consensus        99 ~~-------------~~~fD~V~~~~~  112 (256)
T 1nkv_A           99 VA-------------NEKCDVAACVGA  112 (256)
T ss_dssp             CC-------------SSCEEEEEEESC
T ss_pred             Cc-------------CCCCCEEEECCC
Confidence            43             256999998544

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.10  E-value=6.7e-10  Score=99.83  Aligned_cols=89  Identities=17%  Similarity=0.314  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-------CeEEEEcccc
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDFV  197 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-------~v~vi~gD~~  197 (371)
                      +...+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+++.+++.+++++...+       +++++.+|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            4556677777776788899999999999999999975  599999999999999999986443       7999999986


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ..+..            .+.||+|+++-.+
T Consensus        95 ~~~~~------------~~~fD~v~~~~~l  112 (217)
T 3jwh_A           95 YQDKR------------FHGYDAATVIEVI  112 (217)
T ss_dssp             SCCGG------------GCSCSEEEEESCG
T ss_pred             ccccc------------CCCcCEEeeHHHH
Confidence            65432            2579999987554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.10  E-value=4.7e-10  Score=103.16  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~  197 (371)
                      ..-+..+..++..+.+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...   ++++++.+|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~  158 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE  158 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh
Confidence            344556678888888889999999999999999999997   579999999999999999998644   58999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc--ccHHHHHHhccCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDI  243 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~--iss~il~~Ll~~g~~  243 (371)
                      +.++            ..+.+|+|+.|+|..  +...+...|.++|.+
T Consensus       159 ~~~~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  194 (258)
T 2pwy_A          159 EAEL------------EEAAYDGVALDLMEPWKVLEKAALALKPDRFL  194 (258)
T ss_dssp             GCCC------------CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEE
T ss_pred             hcCC------------CCCCcCEEEECCcCHHHHHHHHHHhCCCCCEE
Confidence            7643            235699999998743  334455555555544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.10  E-value=2e-10  Score=103.13  Aligned_cols=82  Identities=29%  Similarity=0.497  Sum_probs=69.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHH
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ..++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++.  .+++++.+|+.++++         
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~~---------  103 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFEV---------  103 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCCC---------
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcCC---------
Confidence            345555555678899999999999999999999999999999999999999876  589999999998753         


Q ss_pred             hhccCCCeeEEEecCCC
Q 017450          211 RRKSSSGFAKVVANIPF  227 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy  227 (371)
                         . +.+|+|+++..+
T Consensus       104 ---~-~~fD~v~~~~~l  116 (220)
T 3hnr_A          104 ---P-TSIDTIVSTYAF  116 (220)
T ss_dssp             ---C-SCCSEEEEESCG
T ss_pred             ---C-CCeEEEEECcch
Confidence               2 679999988654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.09  E-value=3.7e-10  Score=105.49  Aligned_cols=108  Identities=20%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC-----CCeEEEEcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQED  195 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~-----~~v~vi~gD  195 (371)
                      .+.+..+..++..+.+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...     ++++++++|
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            456778888999999999999999999999999999986   579999999999999999998643     489999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHhccCCCc
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDI  243 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~Ll~~g~~  243 (371)
                      +.+.++            ..+.+|.|++|+|-  .+...+...|.++|.+
T Consensus       162 ~~~~~~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l  199 (280)
T 1i9g_A          162 LADSEL------------PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVL  199 (280)
T ss_dssp             GGGCCC------------CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEE
T ss_pred             hHhcCC------------CCCceeEEEECCcCHHHHHHHHHHhCCCCCEE
Confidence            988643            23569999999874  3344555555565544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.09  E-value=2.8e-10  Score=112.44  Aligned_cols=94  Identities=12%  Similarity=0.150  Sum_probs=80.5

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---------------------------------------  163 (371)
                      -.+.+.+++.|+......++..+||++||+|.+.+..+..+                                       
T Consensus       176 Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          176 APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            34568899999999999999999999999999998888653                                       


Q ss_pred             -CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          164 -ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       164 -~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                       .+|+|+|+|+.+++.|++|....+   .++++++|+.+++.             ...+|+||+|+||..
T Consensus       256 ~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------------~~~fD~Iv~NPPYG~  312 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------------NKINGVLISNPPYGE  312 (384)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------------CCCSCEEEECCCCTT
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------------cCCcCEEEECCchhh
Confidence             249999999999999999987654   59999999998743             247999999999964

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.09  E-value=2.2e-10  Score=104.67  Aligned_cols=84  Identities=20%  Similarity=0.223  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccc--hhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC--HIR  202 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~--~~~  202 (371)
                      ..+...+...+ ..++.+|||||||+|.++..+++.+. +|+|+|+++.|++.|+++....+ +++++++|+.++  ++ 
T Consensus        47 ~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-  124 (236)
T 1zx0_A           47 TPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-  124 (236)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-
T ss_pred             HHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc-
Confidence            34455555544 45778999999999999999987654 89999999999999999986543 799999999886  33 


Q ss_pred             hhhhhHHHhhccCCCeeEEEe
Q 017450          203 SHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVa  223 (371)
                                 ..+.||.|++
T Consensus       125 -----------~~~~fD~V~~  134 (236)
T 1zx0_A          125 -----------PDGHFDGILY  134 (236)
T ss_dssp             -----------CTTCEEEEEE
T ss_pred             -----------CCCceEEEEE
Confidence                       2367999998

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.09  E-value=9.2e-10  Score=99.62  Aligned_cols=120  Identities=12%  Similarity=0.103  Sum_probs=85.2

Q ss_pred             cHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHH
Q 017450          100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMV  176 (371)
Q Consensus       100 ~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i  176 (371)
                      ....+++.+.++..    .....+.+.+.....+...+...++.+|||||||+|.+|..+++.   +.+|++||+++.++
T Consensus        21 ~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~   96 (221)
T 3u81_A           21 DPQSVLEAIDTYCT----QKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA   96 (221)
T ss_dssp             CHHHHHHHHHHHHH----HHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHhh----hcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH
Confidence            44455555554321    112335677777777777777778899999999999999999984   67999999999999


Q ss_pred             HHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          177 GLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       177 ~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      +.|++++...+   +++++++|+.+.....     ... ...+.||.|+.+.+...
T Consensus        97 ~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~-----~~~-~~~~~fD~V~~d~~~~~  146 (221)
T 3u81_A           97 AITQQMLNFAGLQDKVTILNGASQDLIPQL-----KKK-YDVDTLDMVFLDHWKDR  146 (221)
T ss_dssp             HHHHHHHHHHTCGGGEEEEESCHHHHGGGT-----TTT-SCCCCCSEEEECSCGGG
T ss_pred             HHHHHHHHHcCCCCceEEEECCHHHHHHHH-----HHh-cCCCceEEEEEcCCccc
Confidence            99999987543   6999999997642110     000 01157999998875433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.09  E-value=5e-10  Score=106.70  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHH-HHH-hCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNV-LLN-AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~-La~-~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~  204 (371)
                      +++.-...+.+.++++|||||||+|.+|.. +++ .+++|+|||+|++|++.|+++++..  .+++++++|+.+++    
T Consensus       110 l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----  185 (298)
T 3fpf_A          110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----  185 (298)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----
T ss_pred             HHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----
Confidence            444444677889999999999999987654 455 3889999999999999999998643  58999999998863    


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC----cccHHHHHHhccCCCc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF----NISTDVIKQLLPMGDI  243 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy----~iss~il~~Ll~~g~~  243 (371)
                                ...||+|+.+.--    .+...+...|.++|.+
T Consensus       186 ----------d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~L  218 (298)
T 3fpf_A          186 ----------GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRI  218 (298)
T ss_dssp             ----------GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEE
T ss_pred             ----------CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEE
Confidence                      2568998865321    1223444455555544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.08  E-value=3.3e-10  Score=101.94  Aligned_cols=78  Identities=13%  Similarity=0.234  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|+++....  ++++++++|+.+++..          ...
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------~~~  109 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----------FED  109 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----------SCT
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----------cCC
Confidence            35789999999999999999987  579999999999999999988643  4899999999885410          123


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      +.+|.|++|.|-
T Consensus       110 ~~~D~i~~~~~~  121 (214)
T 1yzh_A          110 GEIDRLYLNFSD  121 (214)
T ss_dssp             TCCSEEEEESCC
T ss_pred             CCCCEEEEECCC
Confidence            569999999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.08  E-value=6.2e-10  Score=100.08  Aligned_cols=90  Identities=17%  Similarity=0.275  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-------CeEEEEccc
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDF  196 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-------~v~vi~gD~  196 (371)
                      .+...+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+++.+++.+++++...+       +++++.+|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            34556667777766778899999999999999999875  699999999999999999986432       799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ...+..            .+.||+|+++-.+
T Consensus        94 ~~~~~~------------~~~fD~V~~~~~l  112 (219)
T 3jwg_A           94 VYRDKR------------FSGYDAATVIEVI  112 (219)
T ss_dssp             SSCCGG------------GTTCSEEEEESCG
T ss_pred             cccccc------------cCCCCEEEEHHHH
Confidence            765432            3579999987544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.08  E-value=6.3e-10  Score=100.91  Aligned_cols=87  Identities=22%  Similarity=0.408  Sum_probs=72.8

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh
Q 017450          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       129 v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~  205 (371)
                      ....++..+. ..++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.+++++...++++++.+|+.+.++    
T Consensus        31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----  106 (234)
T 3dtn_A           31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF----  106 (234)
T ss_dssp             HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCC----
T ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCC----
Confidence            3455555554 456789999999999999999998  779999999999999999998877799999999988753    


Q ss_pred             hhHHHhhccCCCeeEEEecCCCc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                               .+.+|+|+++..++
T Consensus       107 ---------~~~fD~v~~~~~l~  120 (234)
T 3dtn_A          107 ---------EEKYDMVVSALSIH  120 (234)
T ss_dssp             ---------CSCEEEEEEESCGG
T ss_pred             ---------CCCceEEEEeCccc
Confidence                     26799999986653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.08  E-value=2.3e-10  Score=113.11  Aligned_cols=93  Identities=13%  Similarity=0.218  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC----------------------------------------
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----------------------------------------  163 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~----------------------------------------  163 (371)
                      .+.+.+++.|+..+...++..|||+|||+|.++..++..+                                        
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            4567889999999998889999999999999999888753                                        


Q ss_pred             CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          164 ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       164 ~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      .+|+|+|+|+.+++.|+++....+   ++++.++|+.++..             +..+|+||+|+||..
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------------~~~~D~Iv~NPPyg~  313 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------------EDEFGFIITNPPYGE  313 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------------SCBSCEEEECCCCCC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------------CCCCcEEEECCCCcC
Confidence            469999999999999999987543   69999999998742             357999999999964

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.08  E-value=2.6e-10  Score=117.43  Aligned_cols=121  Identities=15%  Similarity=0.148  Sum_probs=91.1

Q ss_pred             CcHHHHHHHHHh-cCCCcccccCcccCCCHHHHHHHHHHhc----CCCCCEEEEEcCcccHHHHHHHHh-----CCeEEE
Q 017450           99 DDYHATIKALNS-KGRFPRKSLGQHYMLNSEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNA-----GATVLA  168 (371)
Q Consensus        99 ~~~~~~~~~l~~-~~~~~~k~lGQ~fl~~~~v~~~i~~~l~----~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~a  168 (371)
                      +..+.+.+.+-+ .....++..|| |.|++.+++.|++.+.    ..++.+|||.+||+|.+...+++.     ..+++|
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~-fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G  253 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGE-FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFG  253 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSS-CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCe-ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEE
Confidence            344555554432 23346678899 8899999999999998    457789999999999988887775     458999


Q ss_pred             EeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          169 IEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       169 IE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      +|+|+.++..|+.++.-.    +++.+.++|.+..++..         .....||+||+||||..
T Consensus       254 ~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~---------~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          254 QELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT---------QEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC---------SSCCCBSEEEECCCTTC
T ss_pred             EECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc---------cccccccEEEecCCcCC
Confidence            999999999999886432    26789999998764211         12467999999999964

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.08  E-value=6.9e-10  Score=98.83  Aligned_cols=89  Identities=19%  Similarity=0.325  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~  202 (371)
                      +.+...+++.+...++ +|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...   ++++++.+|+.++++.
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            4567778888877666 9999999999999999997 679999999999999999998654   3799999999987642


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                                  .+.+|+|+++..++
T Consensus       109 ------------~~~~D~v~~~~~l~  122 (219)
T 3dlc_A          109 ------------DNYADLIVSRGSVF  122 (219)
T ss_dssp             ------------TTCEEEEEEESCGG
T ss_pred             ------------cccccEEEECchHh
Confidence                        36799999986543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.08  E-value=4.6e-10  Score=101.38  Aligned_cols=100  Identities=14%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      +.+++.....+...+...++.+|||||||+|..|..+++.   +.+|+++|+++.+++.+++++...+   +++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            4566777666666666667889999999999999999987   6799999999999999999987543   599999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      .+....     +... ...+.||.|+.+.+..
T Consensus       126 ~~~~~~-----~~~~-~~~~~fD~v~~~~~~~  151 (225)
T 3tr6_A          126 KDTLAE-----LIHA-GQAWQYDLIYIDADKA  151 (225)
T ss_dssp             HHHHHH-----HHTT-TCTTCEEEEEECSCGG
T ss_pred             HHHHHH-----hhhc-cCCCCccEEEECCCHH
Confidence            764211     0000 0015799999887743

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.07  E-value=4.7e-10  Score=110.06  Aligned_cols=116  Identities=13%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      ..+...+++.+... +++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++|.+.++  +++++.+|+.++.....
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~  278 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN  278 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence            34455556665544 5789999999999999999877899999999999999999987653  89999999987532100


Q ss_pred             hhh-H--HHhh-ccCCCeeEEEecCCCc-ccHHHHHHhccCCCc
Q 017450          205 MLS-L--FERR-KSSSGFAKVVANIPFN-ISTDVIKQLLPMGDI  243 (371)
Q Consensus       205 ~~~-l--~~~~-~~~~~~d~VVaNlPy~-iss~il~~Ll~~g~~  243 (371)
                      ... +  +... .....||+||.|+|+. ....++..+.+.+.+
T Consensus       279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~i  322 (369)
T 3bt7_A          279 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRI  322 (369)
T ss_dssp             SCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEE
T ss_pred             hccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEE
Confidence            000 0  0000 0002699999999986 455677777655543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.07  E-value=6.8e-10  Score=101.26  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             cCCCHHHHHHHHHHhcCCC---CCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC----CCeEEE
Q 017450          123 YMLNSEINDQLAAAAAVQE---GDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----DQLKVL  192 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~---~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi  192 (371)
                      +.+++.....+...+...+   +.+|||||||+|++|..|++.   +.+|++||+++.+++.|++++...    ++++++
T Consensus        35 p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~  114 (221)
T 3dr5_A           35 PAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL  114 (221)
T ss_dssp             CCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence            3456665555444444333   449999999999999999985   579999999999999999998753    379999


Q ss_pred             EcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++|+.+....          ...+.||.|+.+.+..
T Consensus       115 ~gda~~~l~~----------~~~~~fD~V~~d~~~~  140 (221)
T 3dr5_A          115 LSRPLDVMSR----------LANDSYQLVFGQVSPM  140 (221)
T ss_dssp             CSCHHHHGGG----------SCTTCEEEEEECCCTT
T ss_pred             EcCHHHHHHH----------hcCCCcCeEEEcCcHH
Confidence            9999875321          1136799999886643

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.07  E-value=2.9e-10  Score=107.20  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      .....+...+  .++++|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++...++   +++++++|+.++..  
T Consensus       114 ~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--  189 (278)
T 2frn_A          114 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--  189 (278)
T ss_dssp             HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--
T ss_pred             HHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--
Confidence            4445555543  4688999999999999999999876 59999999999999999987543   48999999988742  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcc---cHHHHHHhccCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNI---STDVIKQLLPMGD  242 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~i---ss~il~~Ll~~g~  242 (371)
                                 ...||+|++|+|+..   ...+...|.++|.
T Consensus       190 -----------~~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~  220 (278)
T 2frn_A          190 -----------ENIADRILMGYVVRTHEFIPKALSIAKDGAI  220 (278)
T ss_dssp             -----------CSCEEEEEECCCSSGGGGHHHHHHHEEEEEE
T ss_pred             -----------cCCccEEEECCchhHHHHHHHHHHHCCCCeE
Confidence                       357999999999753   2234444445443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.07  E-value=6.8e-10  Score=101.60  Aligned_cols=89  Identities=12%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~  204 (371)
                      +.....++..+.+.++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...  ++++++.+|+.++++   
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---   83 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF---   83 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS---
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC---
Confidence            455677888889999999999999999999999999889999999999999999987543  479999999988754   


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                               ..+.||+|+++...
T Consensus        84 ---------~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           84 ---------PDDSFDIITCRYAA   97 (239)
T ss_dssp             ---------CTTCEEEEEEESCG
T ss_pred             ---------CCCcEEEEEECCch
Confidence                     23679999988543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.07  E-value=8.8e-10  Score=102.31  Aligned_cols=92  Identities=12%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccc
Q 017450          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (371)
Q Consensus       125 ~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~  199 (371)
                      ........++..+. +.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++...   ++++++.+|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence            34566677777766 6688999999999999999999985 49999999999999999998654   3699999999887


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++            ..+.||+|+++.+++
T Consensus       109 ~~------------~~~~fD~i~~~~~~~  125 (267)
T 3kkz_A          109 PF------------RNEELDLIWSEGAIY  125 (267)
T ss_dssp             CC------------CTTCEEEEEESSCGG
T ss_pred             CC------------CCCCEEEEEEcCCce
Confidence            54            236799999987654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.07  E-value=3.7e-10  Score=101.97  Aligned_cols=103  Identities=15%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      .+++.....+...+...++.+|||||||+|.++..+++.   +.+|+++|+++.+++.+++++...+   +++++.+|+.
T Consensus        41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  120 (223)
T 3duw_A           41 DVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL  120 (223)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            346666666666666667899999999999999999997   6799999999999999999987543   5999999997


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHH
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~i  233 (371)
                      +....     +..  ...+.||.|+.+.+.....++
T Consensus       121 ~~~~~-----~~~--~~~~~fD~v~~d~~~~~~~~~  149 (223)
T 3duw_A          121 DSLQQ-----IEN--EKYEPFDFIFIDADKQNNPAY  149 (223)
T ss_dssp             HHHHH-----HHH--TTCCCCSEEEECSCGGGHHHH
T ss_pred             HHHHH-----HHh--cCCCCcCEEEEcCCcHHHHHH
Confidence            64211     100  011569999988774433333

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.07  E-value=9.7e-10  Score=100.81  Aligned_cols=83  Identities=22%  Similarity=0.314  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+..++......++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+ +++++++|+.++++      
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------  102 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF------  102 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC------
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhccc------
Confidence            34555555555677899999999999999999999999999999999999999986544 79999999988643      


Q ss_pred             HHHhhccCCCeeEEEec
Q 017450          208 LFERRKSSSGFAKVVAN  224 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaN  224 (371)
                             .+.+|+|+++
T Consensus       103 -------~~~fD~v~~~  112 (252)
T 1wzn_A          103 -------KNEFDAVTMF  112 (252)
T ss_dssp             -------CSCEEEEEEC
T ss_pred             -------CCCccEEEEc
Confidence                   2569999863

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.06  E-value=1.8e-10  Score=106.27  Aligned_cols=94  Identities=19%  Similarity=0.177  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC---C---C----------
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---D---Q----------  188 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~---~---~----------  188 (371)
                      ++..++..+...++.+|||+|||+|.++..+++.    +.+|+|+|+|+.+++.|+++....   +   +          
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            4444444444446779999999999999999987    568999999999999999887654   2   1          


Q ss_pred             ---------------eE-------------EEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          189 ---------------LK-------------VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       189 ---------------v~-------------vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                                     ++             ++++|+.+......   .    .....||+|++|+||..
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~----~~~~~fD~Iv~npp~~~  180 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSA---V----LAGSAPDVVLTDLPYGE  180 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH---H----HTTCCCSEEEEECCGGG
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeeccccccccccc---c----cCCCCceEEEeCCCeec
Confidence                           66             99999877421000   0    01247999999999854

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.06  E-value=3.2e-10  Score=109.91  Aligned_cols=98  Identities=19%  Similarity=0.173  Sum_probs=75.1

Q ss_pred             cCCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~  197 (371)
                      |.........+.+.+. ..++.+|||+|||+|.++..++..+++|++||+|+.+++.|++++..++    +++++++|+.
T Consensus       134 f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~  213 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  213 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHH
Confidence            3434445555666554 4467899999999999999999998899999999999999999986443    4999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++....     .   .....||+|++|+||.
T Consensus       214 ~~l~~~-----~---~~~~~fD~Ii~dPP~~  236 (332)
T 2igt_A          214 KFIQRE-----E---RRGSTYDIILTDPPKF  236 (332)
T ss_dssp             HHHHHH-----H---HHTCCBSEEEECCCSE
T ss_pred             HHHHHH-----H---hcCCCceEEEECCccc
Confidence            753210     0   0135799999999964

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.06  E-value=4.3e-10  Score=102.51  Aligned_cols=85  Identities=12%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHh
Q 017450          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ++.+.+.++++|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++....++++++.+|+.+.....        
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~--------  138 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA--------  138 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT--------
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccc--------
Confidence            34445667889999999999999999988 4 6999999999999999999876679999999998721100        


Q ss_pred             hccCCCeeEEEecCCC
Q 017450          212 RKSSSGFAKVVANIPF  227 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy  227 (371)
                       .....+|+|+.++|.
T Consensus       139 -~~~~~~D~v~~~~~~  153 (230)
T 1fbn_A          139 -NIVEKVDVIYEDVAQ  153 (230)
T ss_dssp             -TTSCCEEEEEECCCS
T ss_pred             -ccCccEEEEEEecCC
Confidence             012579999987764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.06  E-value=2.6e-10  Score=107.89  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..+|++|||+|||+|.++..+|..| ++|+|+|+|+.+++.+++|++.++   +++++++|+.++.             .
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------------~  189 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------------G  189 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------------C
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-------------c
Confidence            4578999999999999999999987 589999999999999999988653   6999999998863             2


Q ss_pred             CCCeeEEEecCCCcc
Q 017450          215 SSGFAKVVANIPFNI  229 (371)
Q Consensus       215 ~~~~d~VVaNlPy~i  229 (371)
                      .+.+|.|++|+|+..
T Consensus       190 ~~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          190 ENIADRILMGYVVRT  204 (278)
T ss_dssp             CSCEEEEEECCCSSG
T ss_pred             ccCCCEEEECCCCcH
Confidence            367999999999753

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.06  E-value=6.1e-10  Score=106.54  Aligned_cols=96  Identities=10%  Similarity=0.305  Sum_probs=78.3

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~  202 (371)
                      .+.+++.+++.+.+.++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|++++..+ ++++++++|+.+++..
T Consensus        11 ~pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           11 IPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL   90 (301)
T ss_dssp             CCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence            3456778888888888999999999999999999997  479999999999999999998765 4899999999886521


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            +.. .....+|.|+.|+|+.
T Consensus        91 ------l~~-~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           91 ------LKT-LGIEKVDGILMDLGVS  109 (301)
T ss_dssp             ------HHH-TTCSCEEEEEEECSCC
T ss_pred             ------HHh-cCCCCCCEEEEcCccc
Confidence                  000 0124699999999974

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.06  E-value=1.2e-09  Score=98.19  Aligned_cols=74  Identities=20%  Similarity=0.271  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      ++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++.... .+++++.+|+.++++            ..+.+|
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~------------~~~~~D  105 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF------------EDKTFD  105 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS------------CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCC------------CCCcEE
Confidence            4789999999999999999999889999999999999999988654 489999999988653            235799


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      .|+++.+
T Consensus       106 ~v~~~~~  112 (227)
T 1ve3_A          106 YVIFIDS  112 (227)
T ss_dssp             EEEEESC
T ss_pred             EEEEcCc
Confidence            9999988

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.06  E-value=6e-10  Score=100.88  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=79.0

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQED  195 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD  195 (371)
                      .+.+++.....+...+...++++|||||||+|.++..+++.   +.+|+++|+++.+++.+++++...   ++++++++|
T Consensus        50 ~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d  129 (229)
T 2avd_A           50 DSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP  129 (229)
T ss_dssp             GGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcC
Confidence            47788888887777777778899999999999999999986   579999999999999999998654   379999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +.+....     +... ...+.||.|+.+.+..
T Consensus       130 ~~~~~~~-----~~~~-~~~~~~D~v~~d~~~~  156 (229)
T 2avd_A          130 ALETLDE-----LLAA-GEAGTFDVAVVDADKE  156 (229)
T ss_dssp             HHHHHHH-----HHHT-TCTTCEEEEEECSCST
T ss_pred             HHHHHHH-----HHhc-CCCCCccEEEECCCHH
Confidence            9764211     1000 0015799999998743

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.06  E-value=2.8e-10  Score=105.67  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      +.....+.+.+.+.+.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.    +++++.+|+.+++
T Consensus        14 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~   89 (261)
T 3ege_A           14 QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLA   89 (261)
T ss_dssp             CSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTSCC
T ss_pred             hcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhhCC
Confidence            344566788999999998888999999999999999999998899999999999998876554    8999999998876


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.            .+.||.|+++..+
T Consensus        90 ~~------------~~~fD~v~~~~~l  104 (261)
T 3ege_A           90 LP------------DKSVDGVISILAI  104 (261)
T ss_dssp             SC------------TTCBSEEEEESCG
T ss_pred             CC------------CCCEeEEEEcchH
Confidence            42            3679999988654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.06  E-value=1.3e-09  Score=100.28  Aligned_cols=92  Identities=24%  Similarity=0.392  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHh-----cCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccc
Q 017450          126 NSEINDQLAAAA-----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKC  199 (371)
Q Consensus       126 ~~~v~~~i~~~l-----~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~  199 (371)
                      +......+++.+     ...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++.. .++++++.+|+.++
T Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~   98 (263)
T 2yqz_A           19 PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI   98 (263)
T ss_dssp             CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC
T ss_pred             ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC
Confidence            445555555555     456788999999999999999999989999999999999999999732 24899999999887


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++            ..+.||+|+++..++.
T Consensus        99 ~~------------~~~~fD~v~~~~~l~~  116 (263)
T 2yqz_A           99 PL------------PDESVHGVIVVHLWHL  116 (263)
T ss_dssp             CS------------CTTCEEEEEEESCGGG
T ss_pred             CC------------CCCCeeEEEECCchhh
Confidence            53            2357999999866544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.06  E-value=5.6e-10  Score=103.26  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      .+++.....+...+...++.+|||||||+|.++..+++.   +.+|+++|+++.+++.|++++...+   +++++.+|+.
T Consensus        46 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  125 (248)
T 3tfw_A           46 DVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPAL  125 (248)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            345666666655556667899999999999999999987   6799999999999999999987543   7999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHH
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il  234 (371)
                      +.....         ...+.||.|+.+.+.....+.+
T Consensus       126 ~~l~~~---------~~~~~fD~V~~d~~~~~~~~~l  153 (248)
T 3tfw_A          126 QSLESL---------GECPAFDLIFIDADKPNNPHYL  153 (248)
T ss_dssp             HHHHTC---------CSCCCCSEEEECSCGGGHHHHH
T ss_pred             HHHHhc---------CCCCCeEEEEECCchHHHHHHH
Confidence            742110         1124799999887654333333

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.05  E-value=1.2e-09  Score=101.38  Aligned_cols=89  Identities=22%  Similarity=0.302  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~  203 (371)
                      .+.+.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.++++. 
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-  126 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE-  126 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC-
Confidence            45677888888888999999999999999999986 789999999999999999988654   2799999999887542 


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCc
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                                 .+.||+|+++-.++
T Consensus       127 -----------~~~fD~v~~~~~l~  140 (273)
T 3bus_A          127 -----------DASFDAVWALESLH  140 (273)
T ss_dssp             -----------TTCEEEEEEESCTT
T ss_pred             -----------CCCccEEEEechhh
Confidence                       35799999876543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.05  E-value=1.9e-09  Score=98.47  Aligned_cols=108  Identities=18%  Similarity=0.273  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      ++.+..+..++..+.+.++++|||+|||+|.++..+++.+.+|+++|+++.+++.|+++....   ++++++.+|+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            445667778889999889999999999999999999998889999999999999999998654   47999999998743


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHhccCCCc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDI  243 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~Ll~~g~~  243 (371)
                      .            ....+|+|+.|+|.  .....+...|.++|.+
T Consensus       154 ~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  186 (248)
T 2yvl_A          154 V------------PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPV  186 (248)
T ss_dssp             C------------CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEE
T ss_pred             c------------CCCcccEEEECCcCHHHHHHHHHHHcCCCCEE
Confidence            1            23569999999874  2334444455555544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.05  E-value=1.3e-09  Score=107.04  Aligned_cols=107  Identities=12%  Similarity=0.211  Sum_probs=84.5

Q ss_pred             CCCcccccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC
Q 017450          112 GRFPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID  187 (371)
Q Consensus       112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~  187 (371)
                      ...+...++|.+.+.+..+..++...  ...++++|||+| |+|.++..++..+  .+|+++|+|+.+++.|+++++..+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g  219 (373)
T 2qm3_A          141 RPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG  219 (373)
T ss_dssp             CCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred             CCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            33466778888888888777776443  233678999999 9999999999875  589999999999999999987544


Q ss_pred             --CeEEEEccccc-chhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          188 --QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       188 --~v~vi~gD~~~-~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                        +++++.+|+.+ ++..           ..+.||+|++|+||...
T Consensus       220 ~~~v~~~~~D~~~~l~~~-----------~~~~fD~Vi~~~p~~~~  254 (373)
T 2qm3_A          220 YEDIEIFTFDLRKPLPDY-----------ALHKFDTFITDPPETLE  254 (373)
T ss_dssp             CCCEEEECCCTTSCCCTT-----------TSSCBSEEEECCCSSHH
T ss_pred             CCCEEEEEChhhhhchhh-----------ccCCccEEEECCCCchH
Confidence              79999999988 4321           12469999999999653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.05  E-value=8.2e-10  Score=97.14  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      .+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...  ++++++.+|+.+.++        
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------   94 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--------   94 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC--------
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC--------
Confidence            4555566667889999999999999999999899999999999999999987643  379999999988643        


Q ss_pred             HhhccCCCeeEEEecCCCc
Q 017450          210 ERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~  228 (371)
                           .+.+|+|+++.+++
T Consensus        95 -----~~~~D~v~~~~~l~  108 (199)
T 2xvm_A           95 -----DRQYDFILSTVVLM  108 (199)
T ss_dssp             -----CCCEEEEEEESCGG
T ss_pred             -----CCCceEEEEcchhh
Confidence                 25799999986654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.05  E-value=4.5e-10  Score=99.65  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=62.2

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V  221 (371)
                      +.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.   ++++++.+|+.++++            ..+.+|+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~------------~~~~fD~v  106 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH---PSVTFHHGTITDLSD------------SPKRWAGL  106 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC---TTSEEECCCGGGGGG------------SCCCEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC---CCCeEEeCccccccc------------CCCCeEEE
Confidence            779999999999999999999999999999999999999884   489999999988754            24679999


Q ss_pred             EecCCC
Q 017450          222 VANIPF  227 (371)
Q Consensus       222 VaNlPy  227 (371)
                      +++..+
T Consensus       107 ~~~~~l  112 (203)
T 3h2b_A          107 LAWYSL  112 (203)
T ss_dssp             EEESSS
T ss_pred             EehhhH
Confidence            987543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.05  E-value=1.1e-09  Score=100.64  Aligned_cols=91  Identities=12%  Similarity=0.166  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccch
Q 017450          126 NSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (371)
Q Consensus       126 ~~~v~~~i~~~l-~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~  200 (371)
                      .+.....++..+ .+.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++...+   +++++.+|+.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  109 (257)
T 3f4k_A           30 SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP  109 (257)
T ss_dssp             CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred             CHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            355666666666 466788999999999999999999854 99999999999999999987543   5999999998875


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +            ..+.||+|+++..++
T Consensus       110 ~------------~~~~fD~v~~~~~l~  125 (257)
T 3f4k_A          110 F------------QNEELDLIWSEGAIY  125 (257)
T ss_dssp             S------------CTTCEEEEEEESCSC
T ss_pred             C------------CCCCEEEEEecChHh
Confidence            4            236799999886554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.05  E-value=1e-09  Score=102.77  Aligned_cols=106  Identities=19%  Similarity=0.316  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      +-+..+..++..+.+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...   ++++++.+|+.+
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34455678888889999999999999999999999987   569999999999999999998654   379999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCc--ccHHHHHHhccCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDI  243 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~--iss~il~~Ll~~g~~  243 (371)
                      . +            ..+.+|+|++|+|..  +...+...|.++|.+
T Consensus       176 ~-~------------~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l  209 (277)
T 1o54_A          176 G-F------------DEKDVDALFLDVPDPWNYIDKCWEALKGGGRF  209 (277)
T ss_dssp             C-C------------SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEE
T ss_pred             c-c------------cCCccCEEEECCcCHHHHHHHHHHHcCCCCEE
Confidence            5 2            235799999999863  344455555555544

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.04  E-value=5.3e-10  Score=104.85  Aligned_cols=103  Identities=19%  Similarity=0.337  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~  201 (371)
                      .....++..+...++++|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++...   ++++++.+|+.+. +
T Consensus        97 ~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~  175 (275)
T 1yb2_A           97 IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I  175 (275)
T ss_dssp             ---------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C
T ss_pred             hhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc-C
Confidence            34456777788889999999999999999999987   679999999999999999998765   4899999999872 1


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHhccCCCc
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDI  243 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~Ll~~g~~  243 (371)
                                  ..+.||.|++++|.  .+...+...|.++|.+
T Consensus       176 ------------~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l  207 (275)
T 1yb2_A          176 ------------SDQMYDAVIADIPDPWNHVQKIASMMKPGSVA  207 (275)
T ss_dssp             ------------CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEE
T ss_pred             ------------cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEE
Confidence                        23579999999874  3344455555555544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.04  E-value=2.7e-10  Score=106.55  Aligned_cols=87  Identities=11%  Similarity=0.058  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~  205 (371)
                      ++.+.+.|.....  .+.+|||||||+|.++..|++.+.+|+|||+++.|++.|++    .++++++++|+.++++.   
T Consensus        26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~~~---   96 (257)
T 4hg2_A           26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTGLP---   96 (257)
T ss_dssp             CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC----CTTEEEEECCTTCCCCC---
T ss_pred             HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh----cCCceeehhhhhhhccc---
Confidence            5677777777654  45699999999999999999999999999999999987753    36899999999998753   


Q ss_pred             hhHHHhhccCCCeeEEEecCCCccc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                               .+.+|.|+++..+++.
T Consensus        97 ---------~~sfD~v~~~~~~h~~  112 (257)
T 4hg2_A           97 ---------PASVDVAIAAQAMHWF  112 (257)
T ss_dssp             ---------SSCEEEEEECSCCTTC
T ss_pred             ---------CCcccEEEEeeehhHh
Confidence                     4679999998766554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.04  E-value=8.5e-10  Score=103.90  Aligned_cols=88  Identities=15%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          127 SEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       127 ~~v~~~i~~~l----~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      ...++.++..+    ...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            34567778887    7788899999999999999999987 889999999999999999987542   379999999998


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      +++.            .+.||+|+++-.
T Consensus       144 ~~~~------------~~~fD~v~~~~~  159 (297)
T 2o57_A          144 IPCE------------DNSYDFIWSQDA  159 (297)
T ss_dssp             CSSC------------TTCEEEEEEESC
T ss_pred             CCCC------------CCCEeEEEecch
Confidence            7642            357999998754

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.04  E-value=6.6e-10  Score=104.22  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             HHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhc
Q 017450          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      +.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+ +++++.+|+.+.+.            
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~------------  181 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI------------  181 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC------------
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc------------
Confidence            33333478899999999999999999999999999999999999999987665 89999999988643            


Q ss_pred             cCCCeeEEEecCCCc
Q 017450          214 SSSGFAKVVANIPFN  228 (371)
Q Consensus       214 ~~~~~d~VVaNlPy~  228 (371)
                       .+.||+|+++.+++
T Consensus       182 -~~~fD~i~~~~~~~  195 (286)
T 3m70_A          182 -QENYDFIVSTVVFM  195 (286)
T ss_dssp             -CSCEEEEEECSSGG
T ss_pred             -cCCccEEEEccchh
Confidence             36799999987764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.03  E-value=1.5e-09  Score=96.54  Aligned_cols=76  Identities=22%  Similarity=0.327  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++....++++++.+|+.++++            ..+.+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~------------~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDF------------PSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCS------------CSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCC------------CCCcc
Confidence            5778999999999999999999876 8999999999999999998765689999999988753            23579


Q ss_pred             eEEEecCCC
Q 017450          219 AKVVANIPF  227 (371)
Q Consensus       219 d~VVaNlPy  227 (371)
                      |+|+++.++
T Consensus       109 D~v~~~~~~  117 (215)
T 2pxx_A          109 DVVLEKGTL  117 (215)
T ss_dssp             EEEEEESHH
T ss_pred             cEEEECcch
Confidence            999998765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.03  E-value=9.8e-10  Score=99.30  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|+++....  +|++++++|+.+++..          ...+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~----------~~~~  107 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV----------FEPG  107 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH----------CCTT
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----------cCcC
Confidence            5779999999999999999987  679999999999999999988654  4899999999885310          1235


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      .+|.|+.|.|
T Consensus       108 ~~d~v~~~~~  117 (213)
T 2fca_A          108 EVKRVYLNFS  117 (213)
T ss_dssp             SCCEEEEESC
T ss_pred             CcCEEEEECC
Confidence            6899988865

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.03  E-value=1.2e-09  Score=104.21  Aligned_cols=86  Identities=10%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~  204 (371)
                      .+.+++.+. +.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++....+   +++++.+|+.++++   
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---  181 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF---  181 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC---
Confidence            345666666 778899999999999999999998 8999999999999999999987653   79999999988754   


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                               ..+.||+|+++-.+
T Consensus       182 ---------~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          182 ---------DKGAVTASWNNEST  195 (312)
T ss_dssp             ---------CTTCEEEEEEESCG
T ss_pred             ---------CCCCEeEEEECCch
Confidence                     23679999987543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.02  E-value=1.2e-09  Score=101.35  Aligned_cols=99  Identities=11%  Similarity=0.101  Sum_probs=75.8

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      +.+.+.....+...+...++++|||||||+|+.+..+++.   +.+|+++|+++.+++.|++++...+   +++++.+|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            5567777777666666667889999999999999999986   6799999999999999999987543   799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .+....     +...-...+.||.|+.+.+
T Consensus       141 ~~~l~~-----l~~~~~~~~~fD~V~~d~~  165 (247)
T 1sui_A          141 LPVLDE-----MIKDEKNHGSYDFIFVDAD  165 (247)
T ss_dssp             HHHHHH-----HHHSGGGTTCBSEEEECSC
T ss_pred             HHHHHH-----HHhccCCCCCEEEEEEcCc
Confidence            875211     0000001367999998765

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.02  E-value=1.1e-09  Score=99.38  Aligned_cols=100  Identities=15%  Similarity=0.089  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccc-cchhhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KCHIRSHMLS  207 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~-~~~~~~~~~~  207 (371)
                      ++..++... ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++   .++++++++|+. .+++.     
T Consensus        37 l~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~~~-----  107 (226)
T 3m33_A           37 TFDLWLSRL-LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---APHADVYEWNGKGELPAG-----  107 (226)
T ss_dssp             HHHHHHHHH-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---CTTSEEEECCSCSSCCTT-----
T ss_pred             HHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---CCCceEEEcchhhccCCc-----
Confidence            344444332 25678999999999999999999999999999999999999998   358999999995 34321     


Q ss_pred             HHHhhccCCCeeEEEecCC-CcccHHHHHHhccCCCc
Q 017450          208 LFERRKSSSGFAKVVANIP-FNISTDVIKQLLPMGDI  243 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlP-y~iss~il~~Ll~~g~~  243 (371)
                            ..+.||+|+++.. -.+...+...|.++|.+
T Consensus       108 ------~~~~fD~v~~~~~~~~~l~~~~~~LkpgG~l  138 (226)
T 3m33_A          108 ------LGAPFGLIVSRRGPTSVILRLPELAAPDAHF  138 (226)
T ss_dssp             ------CCCCEEEEEEESCCSGGGGGHHHHEEEEEEE
T ss_pred             ------CCCCEEEEEeCCCHHHHHHHHHHHcCCCcEE
Confidence                  1367999999842 23334455555555544

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.02  E-value=1.3e-09  Score=102.46  Aligned_cols=92  Identities=16%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             cCCCHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l-~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~  197 (371)
                      +..++.....++..+ ...++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.+++++...+ +++++.+|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~   82 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT   82 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence            345677778887766 5567889999999999999999987   5799999999999999999987665 8999999999


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ++++             .+.||+|+++..+
T Consensus        83 ~~~~-------------~~~fD~v~~~~~l   99 (284)
T 3gu3_A           83 EIEL-------------NDKYDIAICHAFL   99 (284)
T ss_dssp             TCCC-------------SSCEEEEEEESCG
T ss_pred             hcCc-------------CCCeeEEEECChh
Confidence            8653             2579999987654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.01  E-value=1.2e-09  Score=100.27  Aligned_cols=84  Identities=18%  Similarity=0.231  Sum_probs=70.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ..+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.++++.. ..+++++.+|+.++++        
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~--------  104 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIAI--------  104 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCCC--------
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCCC--------
Confidence            3455555656789999999999999999999977 99999999999999999986 4589999999988754        


Q ss_pred             HhhccCCCeeEEEecCCC
Q 017450          210 ERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy  227 (371)
                          ..+.||+|+++..+
T Consensus       105 ----~~~~fD~v~~~~~l  118 (253)
T 3g5l_A          105 ----EPDAYNVVLSSLAL  118 (253)
T ss_dssp             ----CTTCEEEEEEESCG
T ss_pred             ----CCCCeEEEEEchhh
Confidence                23679999987654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.01  E-value=1.3e-09  Score=97.57  Aligned_cols=93  Identities=14%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      +.+++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+   +++++++|+
T Consensus        38 p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  117 (210)
T 3c3p_A           38 PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP  117 (210)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH
Confidence            3456665555555444456789999999999999999986   6799999999999999999886433   699999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      .+....           ..+ ||.|+.+.+.
T Consensus       118 ~~~~~~-----------~~~-fD~v~~~~~~  136 (210)
T 3c3p_A          118 LGIAAG-----------QRD-IDILFMDCDV  136 (210)
T ss_dssp             HHHHTT-----------CCS-EEEEEEETTT
T ss_pred             HHHhcc-----------CCC-CCEEEEcCCh
Confidence            764211           124 9999988553

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.01  E-value=7.5e-10  Score=99.27  Aligned_cols=85  Identities=21%  Similarity=0.354  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~  205 (371)
                      ..++..+...++.+|||||||+|.++..+++.+   .+|+|+|+++.+++.+++++...  ++++++.+|+.++++    
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----  102 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL----  102 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS----
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC----
Confidence            567777788888999999999999999999875   69999999999999999998643  379999999988754    


Q ss_pred             hhHHHhhccCCCeeEEEecCCC
Q 017450          206 LSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                              ..+.+|+|+++..+
T Consensus       103 --------~~~~fD~v~~~~~l  116 (219)
T 3dh0_A          103 --------PDNTVDFIFMAFTF  116 (219)
T ss_dssp             --------CSSCEEEEEEESCG
T ss_pred             --------CCCCeeEEEeehhh
Confidence                    23679999987654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.01  E-value=1.1e-09  Score=99.08  Aligned_cols=91  Identities=11%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             HHHHHHHH---HhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh
Q 017450          128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (371)
Q Consensus       128 ~v~~~i~~---~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~  201 (371)
                      .....++.   .+.+.++++|||+|||+|.++..+++. +  .+|+|+|+++.+++.++++....++++++.+|+.+...
T Consensus        57 ~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  136 (227)
T 1g8a_A           57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE  136 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG
T ss_pred             hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch
Confidence            34455533   333668899999999999999999986 3  69999999999999999998766789999999987432


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ..         ...+.+|+|+++.|.
T Consensus       137 ~~---------~~~~~~D~v~~~~~~  153 (227)
T 1g8a_A          137 YR---------ALVPKVDVIFEDVAQ  153 (227)
T ss_dssp             GT---------TTCCCEEEEEECCCS
T ss_pred             hh---------cccCCceEEEECCCC
Confidence            10         012479999999883

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.01  E-value=7.5e-10  Score=100.77  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|+++....  .|++++.+|+.++...     .    ...+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~-----~----~~~~  104 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHK-----M----IPDN  104 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHH-----H----SCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-----H----cCCC
Confidence            5789999999999999999987  458999999999999999998654  4899999999874110     0    1346


Q ss_pred             CeeEEEec--CCC
Q 017450          217 GFAKVVAN--IPF  227 (371)
Q Consensus       217 ~~d~VVaN--lPy  227 (371)
                      .+|.|+.|  .||
T Consensus       105 ~~d~v~~~~~~p~  117 (218)
T 3dxy_A          105 SLRMVQLFFPDPW  117 (218)
T ss_dssp             CEEEEEEESCCCC
T ss_pred             ChheEEEeCCCCc
Confidence            79999999  454

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.01  E-value=1.1e-09  Score=105.74  Aligned_cols=109  Identities=19%  Similarity=0.257  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhcc-------------CCC
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------------IDQ  188 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~-------------~~~  188 (371)
                      ..+.....++..+.+.++++|||+|||+|.++..+++. +  .+|+++|+++.+++.|++++..             .++
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            56677888888899999999999999999999999987 4  7899999999999999998863             248


Q ss_pred             eEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc--ccHHHHHHhccCCCc
Q 017450          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDI  243 (371)
Q Consensus       189 v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~--iss~il~~Ll~~g~~  243 (371)
                      ++++.+|+.+....          ...+.+|.|++|+|-.  ....+...|.++|.+
T Consensus       169 v~~~~~d~~~~~~~----------~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~l  215 (336)
T 2b25_A          169 VDFIHKDISGATED----------IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVC  215 (336)
T ss_dssp             EEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEE
T ss_pred             eEEEECChHHcccc----------cCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEE
Confidence            99999999876211          0124699999987643  234444455555544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.01  E-value=9.8e-10  Score=99.36  Aligned_cols=82  Identities=16%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+.++++|||+|||+|.++..+++..  .+|+|+|+++.|++.+.+......++.++.+|+.+.....         ...
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~---------~~~  124 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS---------GIV  124 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT---------TTC
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhc---------ccc
Confidence            45678899999999999999999874  6899999999988766665544468999999987642100         012


Q ss_pred             CCeeEEEecCCCc
Q 017450          216 SGFAKVVANIPFN  228 (371)
Q Consensus       216 ~~~d~VVaNlPy~  228 (371)
                      +.||.|++|.+..
T Consensus       125 ~~fD~V~~~~~~~  137 (210)
T 1nt2_A          125 EKVDLIYQDIAQK  137 (210)
T ss_dssp             CCEEEEEECCCST
T ss_pred             cceeEEEEeccCh
Confidence            6799999997643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.00  E-value=2.5e-09  Score=98.59  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh
Q 017450          128 EINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (371)
Q Consensus       128 ~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~  201 (371)
                      .....++..+.   ++++++|||+|||+|..|..+++.   ..+|+|+|+++.|++.+.+......|+.++.+|+.....
T Consensus        60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~  139 (232)
T 3id6_C           60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS  139 (232)
T ss_dssp             HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh
Confidence            45566666554   779999999999999999999986   359999999999876555444444689999999986432


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ..         ...+.+|+|++|.+.
T Consensus       140 ~~---------~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          140 YK---------SVVENVDVLYVDIAQ  156 (232)
T ss_dssp             TT---------TTCCCEEEEEECCCC
T ss_pred             hh---------ccccceEEEEecCCC
Confidence            11         113579999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.00  E-value=2.8e-09  Score=98.29  Aligned_cols=85  Identities=14%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      +.+++|++|||+|||+|+++..+++. |  .+|+|+|++++|++.++++....+|+..+.+|+.+.....         .
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~---------~  143 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR---------H  143 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT---------T
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc---------c
Confidence            45789999999999999999999986 3  5899999999999999999888789999999987643211         1


Q ss_pred             cCCCeeEEEecCCCccc
Q 017450          214 SSSGFAKVVANIPFNIS  230 (371)
Q Consensus       214 ~~~~~d~VVaNlPy~is  230 (371)
                      ..+.+|+|+.++++...
T Consensus       144 ~~~~vDvVf~d~~~~~~  160 (233)
T 4df3_A          144 LVEGVDGLYADVAQPEQ  160 (233)
T ss_dssp             TCCCEEEEEECCCCTTH
T ss_pred             ccceEEEEEEeccCChh
Confidence            23678999998887643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.00  E-value=1.4e-09  Score=105.60  Aligned_cols=88  Identities=17%  Similarity=0.341  Sum_probs=71.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~  204 (371)
                      ..+.|...+...++++|||||||+|.++..+++.+. +|+|+|+++ +++.|++++..+   ++++++.+|+.++++   
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---  127 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL---  127 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC---
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC---
Confidence            335566666667889999999999999999999875 899999996 999999988654   489999999998753   


Q ss_pred             hhhHHHhhccCCCeeEEEecC-CCcc
Q 017450          205 MLSLFERRKSSSGFAKVVANI-PFNI  229 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNl-Py~i  229 (371)
                               +.+.+|+|+++. +|..
T Consensus       128 ---------~~~~~D~Ivs~~~~~~l  144 (340)
T 2fyt_A          128 ---------PVEKVDVIISEWMGYFL  144 (340)
T ss_dssp             ---------SCSCEEEEEECCCBTTB
T ss_pred             ---------CCCcEEEEEEcCchhhc
Confidence                     235799999986 5543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.00  E-value=3.9e-10  Score=116.22  Aligned_cols=117  Identities=15%  Similarity=0.064  Sum_probs=87.8

Q ss_pred             cHHHHHHHHHh-cCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----------------
Q 017450          100 DYHATIKALNS-KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----------------  162 (371)
Q Consensus       100 ~~~~~~~~l~~-~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----------------  162 (371)
                      ..+.+.+.+-+ .....++..|| |.+++.+++.|++.+.+.++ +|||.+||+|.+...+++.                
T Consensus       204 ~lG~~yE~ll~~~a~~~~k~~G~-fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~  281 (544)
T 3khk_A          204 ILGHVYEYFLGQFALAEGKQGGQ-YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQK  281 (544)
T ss_dssp             SHHHHHHHHHHHHHHTTTCCSTT-TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHG
T ss_pred             HHHHHHHHHHHHHHHhhCccCCe-EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHh
Confidence            44445554332 22245677899 89999999999999988766 9999999999987776432                


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          163 -GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       163 -~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                       ..+++|+|+|+.++..|+.++.-.+   ++.+.++|.+..+..           ....||+||+||||..
T Consensus       282 ~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~-----------~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          282 KQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH-----------PDLRADFVMTNPPFNM  341 (544)
T ss_dssp             GGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC-----------TTCCEEEEEECCCSSC
T ss_pred             hhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc-----------ccccccEEEECCCcCC
Confidence             3479999999999999999875432   444478888765421           2367999999999975

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.00  E-value=2.3e-09  Score=102.14  Aligned_cols=85  Identities=19%  Similarity=0.248  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      ..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....+   +++++.+|+.+++   
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---  153 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  153 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence            45566777777888999999999999999999987 8999999999999999999987543   6999999987652   


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                  +.||+|+++..+
T Consensus       154 ------------~~fD~v~~~~~l  165 (318)
T 2fk8_A          154 ------------EPVDRIVSIEAF  165 (318)
T ss_dssp             ------------CCCSEEEEESCG
T ss_pred             ------------CCcCEEEEeChH
Confidence                        469999987544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.99  E-value=3.3e-10  Score=104.76  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=78.6

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~  196 (371)
                      +.+++.....+...+...++.+|||||||+|+.|..+++.   +++|++||+++.+++.|++++...   ++++++.+|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            5677888887777777777889999999999999999984   579999999999999999998754   3899999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      .+....     +... ...+.||.|+.+.+..
T Consensus       122 ~~~l~~-----~~~~-~~~~~fD~V~~d~~~~  147 (242)
T 3r3h_A          122 LDTLHS-----LLNE-GGEHQFDFIFIDADKT  147 (242)
T ss_dssp             HHHHHH-----HHHH-HCSSCEEEEEEESCGG
T ss_pred             HHHHHH-----Hhhc-cCCCCEeEEEEcCChH
Confidence            875321     0000 0136799999887643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.99  E-value=1.6e-09  Score=108.32  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=74.0

Q ss_pred             cCCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccch
Q 017450          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~  200 (371)
                      |..++...+.+...+. ..++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++ +++++.+|+.++.
T Consensus       271 ~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~  350 (425)
T 2jjq_A          271 FQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS  350 (425)
T ss_dssp             CCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC
T ss_pred             cccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcC
Confidence            4445555554444332 4577899999999999999999998899999999999999999986432 3899999998863


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      .              ..||+|+.|+|+.-.
T Consensus       351 ~--------------~~fD~Vv~dPPr~g~  366 (425)
T 2jjq_A          351 V--------------KGFDTVIVDPPRAGL  366 (425)
T ss_dssp             C--------------TTCSEEEECCCTTCS
T ss_pred             c--------------cCCCEEEEcCCccch
Confidence            1              269999999998543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.99  E-value=1.2e-09  Score=107.74  Aligned_cols=97  Identities=11%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~  197 (371)
                      |..++.....++.... .++++|||+|||+|.++..++..++ +|++||+++.+++.|++++..++    +++++++|+.
T Consensus       195 ff~~~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~  273 (385)
T 2b78_A          195 IFLDQRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  273 (385)
T ss_dssp             SCGGGHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cCCcHHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            3366666666655442 5778999999999999999998765 89999999999999999987553    7999999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +....     +.   .....||+|+.|+|+.
T Consensus       274 ~~l~~-----~~---~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          274 DYFKY-----AR---RHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCCC
T ss_pred             HHHHH-----HH---HhCCCccEEEECCCCC
Confidence            74211     10   1235799999999985

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.99  E-value=1.7e-09  Score=108.24  Aligned_cols=97  Identities=12%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHH-------HHHhccC-
Q 017450          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLV-------RERFASI-  186 (371)
Q Consensus       117 k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a-------~~~~~~~-  186 (371)
                      ..+|+.   .+.++..+++.+.+.++++|||||||+|.++..+++. + .+|+|||+++.+++.|       ++++... 
T Consensus       221 ~~yGet---~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G  297 (433)
T 1u2z_A          221 YVYGEL---LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG  297 (433)
T ss_dssp             GCCCCB---CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccc---cHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC
Confidence            445652   2889999999999999999999999999999999986 5 4799999999999988       7776543 


Q ss_pred             ---CCeEEEEcccccc--hhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          187 ---DQLKVLQEDFVKC--HIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       187 ---~~v~vi~gD~~~~--~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                         ++++++++|....  ++..          ..+.||+|++|..
T Consensus       298 l~~~nV~~i~gD~~~~~~~~~~----------~~~~FDvIvvn~~  332 (433)
T 1u2z_A          298 MRLNNVEFSLKKSFVDNNRVAE----------LIPQCDVILVNNF  332 (433)
T ss_dssp             BCCCCEEEEESSCSTTCHHHHH----------HGGGCSEEEECCT
T ss_pred             CCCCceEEEEcCcccccccccc----------ccCCCCEEEEeCc
Confidence               4899999875532  1110          1246899998743

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.99  E-value=2.3e-09  Score=98.49  Aligned_cols=99  Identities=10%  Similarity=0.091  Sum_probs=74.7

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      +.+++.....+...+...++++|||||||+|+.+..+++.   +.+|+++|+++.+++.|++++...+   +++++.+|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4456666666666566667889999999999999999986   6799999999999999999987543   699999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .+....     +...-...+.||.|+.+.+
T Consensus       132 ~~~l~~-----l~~~~~~~~~fD~I~~d~~  156 (237)
T 3c3y_A          132 MLALDN-----LLQGQESEGSYDFGFVDAD  156 (237)
T ss_dssp             HHHHHH-----HHHSTTCTTCEEEEEECSC
T ss_pred             HHHHHH-----HHhccCCCCCcCEEEECCc
Confidence            875211     1000001357999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.98  E-value=2e-09  Score=98.54  Aligned_cols=77  Identities=13%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+.+.....+...+...++++|||||||+|.++..+++.   +.+|+++|+++.+++.|++++...+   +++++.+|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            5778888888888887778899999999999999999987   5799999999999999999986543   599999998


Q ss_pred             ccc
Q 017450          197 VKC  199 (371)
Q Consensus       197 ~~~  199 (371)
                      .+.
T Consensus       122 ~~~  124 (239)
T 2hnk_A          122 LET  124 (239)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.98  E-value=3.4e-09  Score=94.47  Aligned_cols=83  Identities=18%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       130 ~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      ...++..+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++  ...++++++.+|+.++ +       
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~-~-------  103 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW-T-------  103 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC-C-------
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC-C-------
Confidence            444555554 5677899999999999999999999999999999999999988  2335899999999876 2       


Q ss_pred             HHhhccCCCeeEEEecCCC
Q 017450          209 FERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy  227 (371)
                           ..+.+|+|+++..+
T Consensus       104 -----~~~~~D~v~~~~~l  117 (218)
T 3ou2_A          104 -----PDRQWDAVFFAHWL  117 (218)
T ss_dssp             -----CSSCEEEEEEESCG
T ss_pred             -----CCCceeEEEEechh
Confidence                 24679999987543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.98  E-value=1.9e-09  Score=98.06  Aligned_cols=86  Identities=19%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+...+...+.  ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.. ..+++++.+|+.++++      
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~------  112 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLPF------  112 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCSS------
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCCC------
Confidence            44555555543  67899999999999999999999999999999999999998853 3589999999998754      


Q ss_pred             HHHhhccCCCeeEEEecCCCc
Q 017450          208 LFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            ..+.+|+|+++..++
T Consensus       113 ------~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A          113 ------ENEQFEAIMAINSLE  127 (242)
T ss_dssp             ------CTTCEEEEEEESCTT
T ss_pred             ------CCCCccEEEEcChHh
Confidence                  236799999875543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.97  E-value=3.5e-09  Score=99.16  Aligned_cols=84  Identities=17%  Similarity=0.212  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~  204 (371)
                      .++.+++.+.+.++.+|||||||+|.++..+++ .+.+|+|+|+++.+++.+++++...   ++++++.+|+.+++    
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  127 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----  127 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----
Confidence            455667777778889999999999999999995 5889999999999999999998754   37999999997642    


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                 +.||+|+++-.+
T Consensus       128 -----------~~fD~v~~~~~l  139 (287)
T 1kpg_A          128 -----------EPVDRIVSIGAF  139 (287)
T ss_dssp             -----------CCCSEEEEESCG
T ss_pred             -----------CCeeEEEEeCch
Confidence                       568999987443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=2.1e-09  Score=98.77  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~  204 (371)
                      ......++..+...++.+|||||||+|.++..+++.  +.+|+++|+++.+++.++++.   ++++++.+|+.+++ .  
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~--   92 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK-P--   92 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC-C--
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC-c--
Confidence            355667777777778899999999999999999998  789999999999999999883   48999999998764 1  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCccc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                                ...||+|+++..++..
T Consensus        93 ----------~~~fD~v~~~~~l~~~  108 (259)
T 2p35_A           93 ----------AQKADLLYANAVFQWV  108 (259)
T ss_dssp             ----------SSCEEEEEEESCGGGS
T ss_pred             ----------cCCcCEEEEeCchhhC
Confidence                      2579999998776543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.97  E-value=3.1e-09  Score=100.42  Aligned_cols=97  Identities=9%  Similarity=0.059  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---hCCeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV  197 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~---~~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~  197 (371)
                      .++.+.+.+..... .++.+|||||||+|.++..+++   .+.+|+|+|+++.+++.|++++...    ++++++++|+.
T Consensus        21 y~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~   99 (299)
T 3g5t_A           21 YPSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD   99 (299)
T ss_dssp             CCHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred             CCHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence            34566666666543 5788999999999999999995   4679999999999999999997653    48999999999


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++++.+.. .     ...+.+|+|+++..++
T Consensus       100 ~~~~~~~~-~-----~~~~~fD~V~~~~~l~  124 (299)
T 3g5t_A          100 DFKFLGAD-S-----VDKQKIDMITAVECAH  124 (299)
T ss_dssp             CCGGGCTT-T-----TTSSCEEEEEEESCGG
T ss_pred             hCCccccc-c-----ccCCCeeEEeHhhHHH
Confidence            87653100 0     0125799999986654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.97  E-value=1.3e-09  Score=100.04  Aligned_cols=86  Identities=20%  Similarity=0.180  Sum_probs=66.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~  206 (371)
                      +.+.+...+ ..+|.+|||||||+|.++..+++. +.+|++||+++.+++.|+++....+ +++++.+|+.++...    
T Consensus        49 ~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~----  123 (236)
T 3orh_A           49 YMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT----  123 (236)
T ss_dssp             HHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG----
T ss_pred             HHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc----
Confidence            334444443 357889999999999999999887 4689999999999999999987655 789999998776432    


Q ss_pred             hHHHhhccCCCeeEEEecC
Q 017450          207 SLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNl  225 (371)
                            .....||.|+.+.
T Consensus       124 ------~~~~~FD~i~~D~  136 (236)
T 3orh_A          124 ------LPDGHFDGILYDT  136 (236)
T ss_dssp             ------SCTTCEEEEEECC
T ss_pred             ------ccccCCceEEEee
Confidence                  1346799988654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.97  E-value=2.2e-09  Score=99.69  Aligned_cols=91  Identities=25%  Similarity=0.301  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHH------HHHHHHHHhccC---CCeEEEEcc
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQH------MVGLVRERFASI---DQLKVLQED  195 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~------~i~~a~~~~~~~---~~v~vi~gD  195 (371)
                      .....++..+.+.++++|||||||+|.++..+++. +  .+|+|+|+++.      +++.+++++...   ++++++.+|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            34567778888889999999999999999999987 4  79999999997      999999998754   379999998


Q ss_pred             -cccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          196 -FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       196 -~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                       +....+.          ...+.||+|+++.+++
T Consensus       110 ~~~~~~~~----------~~~~~fD~v~~~~~l~  133 (275)
T 3bkx_A          110 NLSDDLGP----------IADQHFDRVVLAHSLW  133 (275)
T ss_dssp             CTTTCCGG----------GTTCCCSEEEEESCGG
T ss_pred             hhhhccCC----------CCCCCEEEEEEccchh
Confidence             3222111          1236799999987653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.97  E-value=8.1e-10  Score=103.83  Aligned_cols=92  Identities=16%  Similarity=0.229  Sum_probs=73.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      ...+...+.+.++++|||+|||+|..|..+++.  + .+|+|+|+++.+++.+++++...+  +++++++|+.+++... 
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~-  150 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL-  150 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh-
Confidence            344556677888999999999999999999984  4 699999999999999999987654  8999999998764310 


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                          .   ...+.||.|++|+|+..
T Consensus       151 ----~---~~~~~fD~Vl~d~Pcs~  168 (274)
T 3ajd_A          151 ----L---KNEIFFDKILLDAPCSG  168 (274)
T ss_dssp             ----H---HTTCCEEEEEEEECCC-
T ss_pred             ----h---hccccCCEEEEcCCCCC
Confidence                0   01357999999999864

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.97  E-value=7.7e-10  Score=108.92  Aligned_cols=79  Identities=25%  Similarity=0.330  Sum_probs=64.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhH
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      |.......++++|||||||+|.|+...++.|+ +|+|||.++ +++.|+++++.++   +|+++++|+.++++       
T Consensus        75 i~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------  146 (376)
T 4hc4_A           75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------  146 (376)
T ss_dssp             HHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-------
T ss_pred             HHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-------
Confidence            33333344789999999999999999888875 799999996 8899998887653   79999999998854       


Q ss_pred             HHhhccCCCeeEEEecC
Q 017450          209 FERRKSSSGFAKVVANI  225 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNl  225 (371)
                            ++++|+||+++
T Consensus       147 ------pe~~DvivsE~  157 (376)
T 4hc4_A          147 ------PEQVDAIVSEW  157 (376)
T ss_dssp             ------SSCEEEEECCC
T ss_pred             ------CccccEEEeec
Confidence                  35799999864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.97  E-value=3.3e-09  Score=96.35  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      .+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.++++... .+++++.+|+.++++         
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~---------  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLHL---------  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCCC---------
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhccC---------
Confidence            456666666888999999999999999999987 999999999999999998754 479999999988653         


Q ss_pred             hhccCCCeeEEEecCCC
Q 017450          211 RRKSSSGFAKVVANIPF  227 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy  227 (371)
                         ..+.+|+|+++..+
T Consensus       104 ---~~~~fD~v~~~~~l  117 (243)
T 3bkw_A          104 ---PQDSFDLAYSSLAL  117 (243)
T ss_dssp             ---CTTCEEEEEEESCG
T ss_pred             ---CCCCceEEEEeccc
Confidence               23579999987664

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.97  E-value=3.9e-09  Score=98.88  Aligned_cols=85  Identities=14%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ..++..+... +.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...   ++++++.+|+.+++..     
T Consensus        59 ~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----  132 (285)
T 4htf_A           59 DRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-----  132 (285)
T ss_dssp             HHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-----
T ss_pred             HHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-----
Confidence            3445555443 679999999999999999999999999999999999999998754   3799999999887521     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                            ..+.||+|+++-.+
T Consensus       133 ------~~~~fD~v~~~~~l  146 (285)
T 4htf_A          133 ------LETPVDLILFHAVL  146 (285)
T ss_dssp             ------CSSCEEEEEEESCG
T ss_pred             ------cCCCceEEEECchh
Confidence                  24679999988654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.97  E-value=9.2e-10  Score=109.08  Aligned_cols=93  Identities=20%  Similarity=0.286  Sum_probs=70.1

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhh
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIR  202 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~  202 (371)
                      ..++.....++... ..++++|||+|||+|.++..++..|++|+++|+|+.+++.|++++..++ ..++.++|+.+....
T Consensus       198 f~dqr~~r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~  276 (393)
T 4dmg_A          198 YLDQRENRRLFEAM-VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRG  276 (393)
T ss_dssp             CGGGHHHHHHHHTT-CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHT
T ss_pred             CCCHHHHHHHHHHH-hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH
Confidence            33444444444432 2358899999999999999999998889999999999999999987543 346778998775311


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                                 ..+.||+|+.|+|+.
T Consensus       277 -----------~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          277 -----------LEGPFHHVLLDPPTL  291 (393)
T ss_dssp             -----------CCCCEEEEEECCCCC
T ss_pred             -----------hcCCCCEEEECCCcC
Confidence                       123499999999983

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.96  E-value=2.4e-09  Score=104.07  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~  203 (371)
                      ...+.|...+...++++|||||||+|.++..+++.+. +|+|||+++ +++.|++++..+   ++++++.+|+.++++  
T Consensus        37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--  113 (348)
T 2y1w_A           37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL--  113 (348)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--
T ss_pred             HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC--
Confidence            3456677777777889999999999999999999865 999999996 889999887654   479999999988743  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                 ++.+|+|+++.++
T Consensus       114 -----------~~~~D~Ivs~~~~  126 (348)
T 2y1w_A          114 -----------PEQVDIIISEPMG  126 (348)
T ss_dssp             -----------SSCEEEEEECCCB
T ss_pred             -----------CCceeEEEEeCch
Confidence                       2569999999774

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.96  E-value=1.7e-09  Score=96.01  Aligned_cols=87  Identities=13%  Similarity=0.084  Sum_probs=65.6

Q ss_pred             HHHHHHHHHh-cCCCCCEEEEEcCcccHHH-HHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh
Q 017450          128 EINDQLAAAA-AVQEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       128 ~v~~~i~~~l-~~~~~~~VLEIG~G~G~lt-~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~  204 (371)
                      .....++..+ ...++.+|||+|||+|.++ ..++..+.+|+|+|+++.+++.++++.... .+++++.+|+.++++   
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---   85 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPF---   85 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCS---
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCC---
Confidence            3344444333 3456789999999999974 455566889999999999999999987643 478999999988753   


Q ss_pred             hhhHHHhhccCCCeeEEEecCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                               ..+.+|.|+++-.
T Consensus        86 ---------~~~~fD~v~~~~~   98 (209)
T 2p8j_A           86 ---------KDESMSFVYSYGT   98 (209)
T ss_dssp             ---------CTTCEEEEEECSC
T ss_pred             ---------CCCceeEEEEcCh
Confidence                     2357999998644

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.96  E-value=4.7e-09  Score=96.08  Aligned_cols=88  Identities=19%  Similarity=0.234  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      .....++..+...++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++...++++++.+|+.++++     
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----  154 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL-----  154 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC-----
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCC-----
Confidence            344566666766778999999999999999999874 57999999999999999998765689999999988653     


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                             ..+.||+|+++..+
T Consensus       155 -------~~~~fD~v~~~~~l  168 (254)
T 1xtp_A          155 -------PPNTYDLIVIQWTA  168 (254)
T ss_dssp             -------CSSCEEEEEEESCG
T ss_pred             -------CCCCeEEEEEcchh
Confidence                   23579999987554

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.95  E-value=4.9e-10  Score=104.84  Aligned_cols=89  Identities=17%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCH-------HHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ-------HMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~-------~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~  202 (371)
                      +.+.+...++++|||+|||+|..+..++..+++|+++|+++       .+++.++++...+   ++++++++|+.++...
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~  154 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA  154 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh
Confidence            33344445678999999999999999999999999999999       9999998876533   2599999999875211


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                           +.   .....||+|+.|+||..
T Consensus       155 -----~~---~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          155 -----LV---KTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             -----HH---HHHCCCSEEEECCCC--
T ss_pred             -----hh---ccCCCccEEEECCCCCC
Confidence                 00   00146999999999854

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.95  E-value=1.3e-09  Score=97.51  Aligned_cols=87  Identities=17%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ...++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++    ++++++.+|+.++.....     
T Consensus        41 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~-----  111 (227)
T 3e8s_A           41 DQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKV-----  111 (227)
T ss_dssp             HHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCS-----
T ss_pred             cHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----cccccchhhHHhhccccc-----
Confidence            34455666666779999999999999999999999999999999999999987    477888999877632100     


Q ss_pred             HhhccCCCeeEEEecCCCc
Q 017450          210 ERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~  228 (371)
                         .....||+|+++..++
T Consensus       112 ---~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A          112 ---PVGKDYDLICANFALL  127 (227)
T ss_dssp             ---CCCCCEEEEEEESCCC
T ss_pred             ---ccCCCccEEEECchhh
Confidence               1234599999987765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.95  E-value=2.8e-09  Score=96.71  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhh
Q 017450          128 EINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       128 ~v~~~i~~~l~~~--~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~  204 (371)
                      ...+.+.+.+...  ++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....+ +++++.+|+.++++   
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---   98 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI---   98 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC---
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCc---
Confidence            3455555555443  67899999999999999999999999999999999999999987655 79999999988653   


Q ss_pred             hhhHHHhhccCCCeeEEEecC-CC
Q 017450          205 MLSLFERRKSSSGFAKVVANI-PF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNl-Py  227 (371)
                                .+.+|+|+++. .+
T Consensus        99 ----------~~~fD~v~~~~~~l  112 (246)
T 1y8c_A           99 ----------NRKFDLITCCLDST  112 (246)
T ss_dssp             ----------SCCEEEEEECTTGG
T ss_pred             ----------cCCceEEEEcCccc
Confidence                      25799999876 44

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.95  E-value=1.4e-09  Score=105.85  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=64.4

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhc
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      ...++++|||||||+|.++..+++.+. +|+|||++ .+++.|+++....+   +++++.+|+.++++            
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------  129 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL------------  129 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC------------
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC------------
Confidence            345788999999999999999999865 99999999 59999999887543   59999999998754            


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      +.+.+|+|+++.+
T Consensus       130 ~~~~fD~Iis~~~  142 (349)
T 3q7e_A          130 PVEKVDIIISEWM  142 (349)
T ss_dssp             SSSCEEEEEECCC
T ss_pred             CCCceEEEEEccc
Confidence            2367999999864

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.95  E-value=2.3e-09  Score=97.19  Aligned_cols=82  Identities=13%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       130 ~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      .+.+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++...  +++++++|+.+..        
T Consensus        30 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~~--------   99 (250)
T 2p7i_A           30 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ--------   99 (250)
T ss_dssp             HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC--------
T ss_pred             HHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHcC--------
Confidence            344555443 34677999999999999999999988999999999999999999765  8999999998762        


Q ss_pred             HHhhccCCCeeEEEecCC
Q 017450          209 FERRKSSSGFAKVVANIP  226 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlP  226 (371)
                           ..+.||+|+++--
T Consensus       100 -----~~~~fD~v~~~~~  112 (250)
T 2p7i_A          100 -----LPRRYDNIVLTHV  112 (250)
T ss_dssp             -----CSSCEEEEEEESC
T ss_pred             -----cCCcccEEEEhhH
Confidence                 2357999998644

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.95  E-value=2.5e-09  Score=100.03  Aligned_cols=83  Identities=24%  Similarity=0.417  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      .+.+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.|++.++++.   ++++++.+|+.++++        
T Consensus        46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~--------  114 (279)
T 3ccf_A           46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---PHLHFDVADARNFRV--------  114 (279)
T ss_dssp             CCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCCC--------
T ss_pred             HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCCc--------
Confidence            345667777778899999999999999999998889999999999999999886   478999999988653        


Q ss_pred             HhhccCCCeeEEEecCCCc
Q 017450          210 ERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlPy~  228 (371)
                           .+.||+|+++..++
T Consensus       115 -----~~~fD~v~~~~~l~  128 (279)
T 3ccf_A          115 -----DKPLDAVFSNAMLH  128 (279)
T ss_dssp             -----SSCEEEEEEESCGG
T ss_pred             -----CCCcCEEEEcchhh
Confidence                 25799999986654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.94  E-value=8.8e-10  Score=101.45  Aligned_cols=93  Identities=11%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             cCCC-HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcc
Q 017450          123 YMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (371)
Q Consensus       123 fl~~-~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD  195 (371)
                      .+.. +.....+...+...++++|||||||+|++|..|++.      +++|+|||+++.+++.|+. .  .++++++++|
T Consensus        62 ~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~--~~~v~~~~gD  138 (236)
T 2bm8_A           62 RMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D--MENITLHQGD  138 (236)
T ss_dssp             ECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G--CTTEEEEECC
T ss_pred             cccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c--CCceEEEECc
Confidence            3444 777777777776667789999999999999999986      6799999999999988872 2  2589999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      +.+...-.    .    .....||.|+.+..
T Consensus       139 ~~~~~~l~----~----~~~~~fD~I~~d~~  161 (236)
T 2bm8_A          139 CSDLTTFE----H----LREMAHPLIFIDNA  161 (236)
T ss_dssp             SSCSGGGG----G----GSSSCSSEEEEESS
T ss_pred             chhHHHHH----h----hccCCCCEEEECCc
Confidence            98752100    0    12236899887654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.94  E-value=1.9e-09  Score=104.59  Aligned_cols=87  Identities=17%  Similarity=0.234  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~  205 (371)
                      ..+.+++.+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.+++++...+ +++++.+|+.+..     
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-----  258 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-----  258 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-----
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-----
Confidence            46677777766667899999999999999999885  589999999999999999987654 5788899987642     


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                               .+.||.|++|+||+.
T Consensus       259 ---------~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          259 ---------KGRFDMIISNPPFHD  273 (343)
T ss_dssp             ---------CSCEEEEEECCCCCS
T ss_pred             ---------cCCeeEEEECCCccc
Confidence                     357999999999974

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.94  E-value=5.2e-09  Score=91.20  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      +.++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++.   +++++.+|+.+.++            ..+.+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~---~~~~~~~d~~~~~~------------~~~~~  108 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP---EARWVVGDLSVDQI------------SETDF  108 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---TSEEEECCTTTSCC------------CCCCE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC---CCcEEEcccccCCC------------CCCce
Confidence            4578899999999999999999998999999999999999999864   68999999988653            23579


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |+|+++.+
T Consensus       109 D~i~~~~~  116 (195)
T 3cgg_A          109 DLIVSAGN  116 (195)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCc
Confidence            99999743

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.94  E-value=2.5e-09  Score=103.19  Aligned_cols=85  Identities=18%  Similarity=0.337  Sum_probs=68.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.|.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++..+   ++++++++|+.++++    
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----  101 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL----  101 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC----
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC----
Confidence            34454455555788999999999999999999875 89999999 6999999988654   369999999988753    


Q ss_pred             hhHHHhhccCCCeeEEEecCCC
Q 017450          206 LSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                              +.+.+|+|+++++.
T Consensus       102 --------~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1          102 --------PFPKVDIIISEWMG  115 (328)
T ss_dssp             --------SSSCEEEEEECCCB
T ss_pred             --------CCCcccEEEEeCch
Confidence                    22579999999773

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.94  E-value=3e-09  Score=100.59  Aligned_cols=84  Identities=27%  Similarity=0.403  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-----CCeEEEEcccccch
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCH  200 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-----~~v~vi~gD~~~~~  200 (371)
                      .......++..+...++ +|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...     .+++++.+|+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            45677778887775544 9999999999999999999999999999999999999998764     47999999999875


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEe
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      +             .+.||.|+.
T Consensus       147 ~-------------~~~fD~v~~  156 (299)
T 3g2m_A          147 L-------------DKRFGTVVI  156 (299)
T ss_dssp             C-------------SCCEEEEEE
T ss_pred             c-------------CCCcCEEEE
Confidence            3             367998774

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.94  E-value=2.7e-09  Score=104.92  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=70.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.|.......++.+|||||||+|.++..+++.|. +|+|||++ .|++.|++++..++   +++++++|+.++++    
T Consensus        52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----  126 (376)
T 3r0q_C           52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL----  126 (376)
T ss_dssp             HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC----
T ss_pred             HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc----
Confidence            34444445667889999999999999999999976 99999999 99999999987543   59999999988753    


Q ss_pred             hhHHHhhccCCCeeEEEecC-CCcc
Q 017450          206 LSLFERRKSSSGFAKVVANI-PFNI  229 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNl-Py~i  229 (371)
                               ++.+|+|++++ +|.+
T Consensus       127 ---------~~~~D~Iv~~~~~~~l  142 (376)
T 3r0q_C          127 ---------PEKVDVIISEWMGYFL  142 (376)
T ss_dssp             ---------SSCEEEEEECCCBTTB
T ss_pred             ---------CCcceEEEEcChhhcc
Confidence                     26799999986 4443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.93  E-value=4.1e-09  Score=95.98  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .+.+.++++|||+|||+|.++..+++.   +.+|+|+|+++.+++.+.++.....+++++.+|+.+.....         
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~---------  142 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR---------  142 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG---------
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc---------
Confidence            344667889999999999999999987   26999999999988877777665578999999998743100         


Q ss_pred             ccCCCeeEEEecCC
Q 017450          213 KSSSGFAKVVANIP  226 (371)
Q Consensus       213 ~~~~~~d~VVaNlP  226 (371)
                      ...+.+|+|++|+|
T Consensus       143 ~~~~~~D~V~~~~~  156 (233)
T 2ipx_A          143 MLIAMVDVIFADVA  156 (233)
T ss_dssp             GGCCCEEEEEECCC
T ss_pred             ccCCcEEEEEEcCC
Confidence            12357999999988

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.93  E-value=1e-09  Score=94.60  Aligned_cols=79  Identities=15%  Similarity=0.260  Sum_probs=65.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++   .++++++.+|   .++          
T Consensus         8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d---~~~----------   71 (170)
T 3i9f_A            8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FDSVITLSDP---KEI----------   71 (170)
T ss_dssp             TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CTTSEEESSG---GGS----------
T ss_pred             HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CCCcEEEeCC---CCC----------
Confidence            345556677888999999999999999999877999999999999999998   4589999999   222          


Q ss_pred             hccCCCeeEEEecCCCc
Q 017450          212 RKSSSGFAKVVANIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~  228 (371)
                        ..+.+|+|+++..++
T Consensus        72 --~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           72 --PDNSVDFILFANSFH   86 (170)
T ss_dssp             --CTTCEEEEEEESCST
T ss_pred             --CCCceEEEEEccchh
Confidence              236799999886654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.93  E-value=2.8e-09  Score=102.31  Aligned_cols=92  Identities=14%  Similarity=0.232  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~  199 (371)
                      +.......++..+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...  .+++++++|+.++
T Consensus       102 ~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~  181 (315)
T 1ixk_A          102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI  181 (315)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG
T ss_pred             EeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc
Confidence            34444555667778889999999999999999999985   368999999999999999998754  3899999999886


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +.            ..+.||.|++|+|+.
T Consensus       182 ~~------------~~~~fD~Il~d~Pcs  198 (315)
T 1ixk_A          182 GE------------LNVEFDKILLDAPCT  198 (315)
T ss_dssp             GG------------GCCCEEEEEEECCTT
T ss_pred             cc------------ccccCCEEEEeCCCC
Confidence            43            135799999999964

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.92  E-value=4.3e-09  Score=97.88  Aligned_cols=85  Identities=22%  Similarity=0.302  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~  206 (371)
                      ..+.......++.+|||||||+|.++..+++.  +.+|+++|+++.+++.+++++...  ++++++.+|+.++++     
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-----  101 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF-----  101 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS-----
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC-----
Confidence            33334444567889999999999999999998  679999999999999999998654  389999999998754     


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                             ..+.+|+|+++..+
T Consensus       102 -------~~~~fD~v~~~~~l  115 (276)
T 3mgg_A          102 -------EDSSFDHIFVCFVL  115 (276)
T ss_dssp             -------CTTCEEEEEEESCG
T ss_pred             -------CCCCeeEEEEechh
Confidence                   23679999988655

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.92  E-value=2.9e-09  Score=94.72  Aligned_cols=84  Identities=15%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchh
Q 017450          129 INDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (371)
Q Consensus       129 v~~~i~~~l~~~---~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~  201 (371)
                      +++.++..+...   ++.+|||||||+|.++..++..  +.+|+++|+++.+++.++++....+  +++++++|+.+.. 
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-  128 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-  128 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-
Confidence            445555554332   4789999999999999999986  6799999999999999999887543  6999999998763 


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecC
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                                  ..+.+|+|++|.
T Consensus       129 ------------~~~~~D~i~~~~  140 (207)
T 1jsx_A          129 ------------SEPPFDGVISRA  140 (207)
T ss_dssp             ------------CCSCEEEEECSC
T ss_pred             ------------ccCCcCEEEEec
Confidence                        125799999874

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.92  E-value=2e-09  Score=98.75  Aligned_cols=77  Identities=9%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++.+|||||||+|.++..++..  +.+|+|||+++.+++.|+++....  .+++++++|+.+++...         ...
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---------~~~  139 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------DVR  139 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------TTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccc---------ccc
Confidence            46789999999999999999963  679999999999999999987653  37999999998765310         013


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +.||.|+++.
T Consensus       140 ~~fD~V~~~~  149 (240)
T 1xdz_A          140 ESYDIVTARA  149 (240)
T ss_dssp             TCEEEEEEEC
T ss_pred             CCccEEEEec
Confidence            5799999875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.92  E-value=2.6e-09  Score=97.14  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ..++...... +.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...   .+++++.+|+.+.+.      
T Consensus        57 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------  129 (235)
T 3lcc_A           57 VHLVDTSSLP-LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP------  129 (235)
T ss_dssp             HHHHHTTCSC-CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC------
T ss_pred             HHHHHhcCCC-CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC------
Confidence            3344444443 359999999999999999988889999999999999999998753   379999999988642      


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                             ...||+|+++..+
T Consensus       130 -------~~~fD~v~~~~~l  142 (235)
T 3lcc_A          130 -------TELFDLIFDYVFF  142 (235)
T ss_dssp             -------SSCEEEEEEESST
T ss_pred             -------CCCeeEEEEChhh
Confidence                   2479999987554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.91  E-value=1e-09  Score=109.09  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++++|||+|||+|..+..++..+.+|++||+|+.+++.|++|+..+    .+++++++|+.+.-..          ....
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~----------~~~~  162 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL----------IKTF  162 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH----------HHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh----------ccCC
Confidence            4789999999999999999999999999999999999999998754    4799999999885211          0114


Q ss_pred             CeeEEEecCCCcc
Q 017450          217 GFAKVVANIPFNI  229 (371)
Q Consensus       217 ~~d~VVaNlPy~i  229 (371)
                      .||+|+.|+||.-
T Consensus       163 ~fDvV~lDPPrr~  175 (410)
T 3ll7_A          163 HPDYIYVDPARRS  175 (410)
T ss_dssp             CCSEEEECCEEC-
T ss_pred             CceEEEECCCCcC
Confidence            6999999999975

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.91  E-value=6.2e-09  Score=102.90  Aligned_cols=90  Identities=17%  Similarity=0.189  Sum_probs=70.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---C-CeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~-~v~vi~gD~~~~~~~~~  204 (371)
                      ...++..+  .++++|||+|||+|.++..++..| .+|+|+|+++.+++.|++++..+   . +++++.+|+.+....  
T Consensus       211 ~~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~--  286 (396)
T 3c0k_A          211 SRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT--  286 (396)
T ss_dssp             HHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHH--
T ss_pred             HHHHHHHh--hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHH--
Confidence            34444443  478899999999999999999986 58999999999999999998643   2 789999999876321  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                         +.   .....||+|+.|+|+..
T Consensus       287 ---~~---~~~~~fD~Ii~dpP~~~  305 (396)
T 3c0k_A          287 ---YR---DRGEKFDVIVMDPPKFV  305 (396)
T ss_dssp             ---HH---HTTCCEEEEEECCSSTT
T ss_pred             ---HH---hcCCCCCEEEECCCCCC
Confidence               10   11357999999999843

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.91  E-value=4.6e-09  Score=96.04  Aligned_cols=95  Identities=13%  Similarity=0.191  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~  197 (371)
                      .+++.....+...+...++++|||||||+|+++..+++.   +.+|+++|+++.+++.|++++...   ++++++.+|+.
T Consensus        55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  134 (232)
T 3cbg_A           55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL  134 (232)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            567777666666666667889999999999999999986   569999999999999999988643   26999999987


Q ss_pred             cchhhhhhhhHHHhhccC--CCeeEEEecCC
Q 017450          198 KCHIRSHMLSLFERRKSS--SGFAKVVANIP  226 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~--~~~d~VVaNlP  226 (371)
                      +....     +.   ...  +.||.|+.+.+
T Consensus       135 ~~l~~-----l~---~~~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          135 ATLEQ-----LT---QGKPLPEFDLIFIDAD  157 (232)
T ss_dssp             HHHHH-----HH---TSSSCCCEEEEEECSC
T ss_pred             HHHHH-----HH---hcCCCCCcCEEEECCC
Confidence            64211     10   012  57999998866

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.91  E-value=2.8e-09  Score=103.22  Aligned_cols=75  Identities=16%  Similarity=0.288  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|||+|||+|.++.. +..+.+|+|+|+++.+++.|++++..++   +++++++|+.++.               .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------------~  257 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------------V  257 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------C
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------C
Confidence            5788999999999999999 8766799999999999999999987653   7999999998752               4


Q ss_pred             CeeEEEecCCCccc
Q 017450          217 GFAKVVANIPFNIS  230 (371)
Q Consensus       217 ~~d~VVaNlPy~is  230 (371)
                      .||.|++|+|+...
T Consensus       258 ~fD~Vi~dpP~~~~  271 (336)
T 2yx1_A          258 KGNRVIMNLPKFAH  271 (336)
T ss_dssp             CEEEEEECCTTTGG
T ss_pred             CCcEEEECCcHhHH
Confidence            69999999998643

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.91  E-value=4.6e-09  Score=111.25  Aligned_cols=116  Identities=15%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             HHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHH----hc--CCCCCEEEEEcCcccHHHHHHHHhC-----CeEEEEe
Q 017450          102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAA----AA--VQEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIE  170 (371)
Q Consensus       102 ~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~----l~--~~~~~~VLEIG~G~G~lt~~La~~~-----~~V~aIE  170 (371)
                      ..+.+.+.++....++..|+ |.+++.+++.|+..    +.  ..++.+|||+|||+|.+...+++..     .+++|+|
T Consensus       277 DdL~ell~eya~k~Rkk~Gq-FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvE  355 (878)
T 3s1s_A          277 DELAELIHDIATRGRGHEGV-VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAND  355 (878)
T ss_dssp             HHHHHHHHHHHTTSCCCCBS-SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEEC
T ss_pred             HHHHHHHHHHHHHhCCcCce-EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEE
Confidence            34444555555667788899 99999999999988    22  2357899999999999999988763     3799999


Q ss_pred             CCHHHHHHH--HHHhccC----C--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          171 KDQHMVGLV--RERFASI----D--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       171 ~d~~~i~~a--~~~~~~~----~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      +|+.+++.|  +.+...+    +  ...+..+|+...+..           ....||+||+||||..
T Consensus       356 IDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-----------~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-----------DFANVSVVVMNPPYVS  411 (878)
T ss_dssp             SCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-----------GGTTEEEEEECCBCCS
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-----------ccCCCCEEEECCCccc
Confidence            999999999  5554321    1  335666676654221           2357999999999943

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.91  E-value=4.3e-09  Score=98.75  Aligned_cols=89  Identities=17%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC------CCeEEEEcccccch
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCH  200 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~------~~v~vi~gD~~~~~  200 (371)
                      ..+.+.+...+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++....      .++.+..+|+.+++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            455667777777677889999999999999999999999999999999999999876321      37889999998865


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEec
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      ..     +    ...+.||+|+++
T Consensus       123 ~~-----~----~~~~~fD~V~~~  137 (293)
T 3thr_A          123 KD-----V----PAGDGFDAVICL  137 (293)
T ss_dssp             HH-----S----CCTTCEEEEEEC
T ss_pred             cc-----c----ccCCCeEEEEEc
Confidence            11     0    023679999985

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.90  E-value=5e-09  Score=103.52  Aligned_cols=98  Identities=24%  Similarity=0.267  Sum_probs=74.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~  198 (371)
                      |..++.....++..+ ..++++|||+|||+|.++..++..|+ +|+|+|+++.+++.|++++..++   +++++.+|+.+
T Consensus       200 ~f~~~~~~~~~~~~~-~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~  278 (396)
T 2as0_A          200 FFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  278 (396)
T ss_dssp             CCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             ccCCHHHHHHHHHHH-hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH
Confidence            444544444444443 24788999999999999999999854 89999999999999999987654   79999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ....     +.   .....||+|+.|+|+..
T Consensus       279 ~~~~-----~~---~~~~~fD~Vi~dpP~~~  301 (396)
T 2as0_A          279 EMEK-----LQ---KKGEKFDIVVLDPPAFV  301 (396)
T ss_dssp             HHHH-----HH---HTTCCEEEEEECCCCSC
T ss_pred             HHHH-----HH---hhCCCCCEEEECCCCCC
Confidence            5321     10   12357999999999854

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.90  E-value=6.6e-09  Score=96.37  Aligned_cols=89  Identities=15%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .++.+|||||||+|.++..+++.  +.+|+++|+++.+++.++++.   +++.++.+|+.++++.            .+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~------------~~~  148 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPFS------------DTS  148 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCSBC------------TTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCCCC------------CCc
Confidence            46789999999999999999997  679999999999999999875   4789999999877542            357


Q ss_pred             eeEEEecCCCcccHHHHHHhccCCCc
Q 017450          218 FAKVVANIPFNISTDVIKQLLPMGDI  243 (371)
Q Consensus       218 ~d~VVaNlPy~iss~il~~Ll~~g~~  243 (371)
                      +|+|+++........+...|.++|.+
T Consensus       149 fD~v~~~~~~~~l~~~~~~L~pgG~l  174 (269)
T 1p91_A          149 MDAIIRIYAPCKAEELARVVKPGGWV  174 (269)
T ss_dssp             EEEEEEESCCCCHHHHHHHEEEEEEE
T ss_pred             eeEEEEeCChhhHHHHHHhcCCCcEE
Confidence            99999886655566666666666544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.89  E-value=7.8e-09  Score=93.07  Aligned_cols=76  Identities=24%  Similarity=0.301  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-------CeEEEEcccccchhhhhhhhHHHhh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-------~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++....+       +++++.+|+.++++           
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------   97 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----------   97 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----------
Confidence            367899999999999999999999999999999999999999886543       57999999988754           


Q ss_pred             ccCCCeeEEEecCCC
Q 017450          213 KSSSGFAKVVANIPF  227 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy  227 (371)
                       ..+.+|+|+++..+
T Consensus        98 -~~~~~D~v~~~~~l  111 (235)
T 3sm3_A           98 -HDSSFDFAVMQAFL  111 (235)
T ss_dssp             -CTTCEEEEEEESCG
T ss_pred             -CCCceeEEEEcchh
Confidence             23679999987654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.89  E-value=5.9e-09  Score=96.36  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++..   +++++.+|+.++++             .+.||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~d~~~~~~-------------~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP---DAVLHHGDMRDFSL-------------GRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT---TSEEEECCTTTCCC-------------SCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCEEEECChHHCCc-------------cCCcCE
Confidence            56899999999999999999999999999999999999999864   79999999988753             367999


Q ss_pred             EEecC
Q 017450          221 VVANI  225 (371)
Q Consensus       221 VVaNl  225 (371)
                      |+++.
T Consensus       114 v~~~~  118 (263)
T 3pfg_A          114 VTCMF  118 (263)
T ss_dssp             EEECT
T ss_pred             EEEcC
Confidence            99875

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.88  E-value=3.1e-09  Score=98.65  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .++.+|||||||+|..+..++..  +.+|++||+++.+++.|+++....+  +++++++|+.++....         ...
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~---------~~~  149 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA---------GHR  149 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST---------TTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc---------ccC
Confidence            46789999999999999999986  5799999999999999999987543  7999999998865310         012


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +.||+|+++.
T Consensus       150 ~~fD~I~s~a  159 (249)
T 3g89_A          150 EAYARAVARA  159 (249)
T ss_dssp             TCEEEEEEES
T ss_pred             CCceEEEECC
Confidence            5799999874

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.88  E-value=5.3e-09  Score=106.19  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.++..+...++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++..+   ++++++++|+.++++    
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~----  221 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL----  221 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC----
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc----
Confidence            4456666666678899999999999999999885 4999999998 999999988654   479999999988643    


Q ss_pred             hhHHHhhccCCCeeEEEecCCC
Q 017450          206 LSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                               ++.+|+||+|.+.
T Consensus       222 ---------~~~fD~Ivs~~~~  234 (480)
T 3b3j_A          222 ---------PEQVDIIISEPMG  234 (480)
T ss_dssp             ---------SSCEEEEECCCCH
T ss_pred             ---------CCCeEEEEEeCch
Confidence                     2579999999883

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.87  E-value=3.7e-09  Score=104.11  Aligned_cols=81  Identities=20%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ++++|||+|||+|.++..++..+.+|+++|+++.+++.|++++..++  +++++.+|+.++...     +.   .....|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~-----~~---~~~~~f  280 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRR-----LE---KEGERF  280 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHH-----HH---HTTCCE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHH-----HH---hcCCCe
Confidence            67899999999999999999987799999999999999999987654  699999999876321     10   123579


Q ss_pred             eEEEecCCCcc
Q 017450          219 AKVVANIPFNI  229 (371)
Q Consensus       219 d~VVaNlPy~i  229 (371)
                      |+|+.|+|+..
T Consensus       281 D~Ii~dpP~~~  291 (382)
T 1wxx_A          281 DLVVLDPPAFA  291 (382)
T ss_dssp             EEEEECCCCSC
T ss_pred             eEEEECCCCCC
Confidence            99999999844

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.87  E-value=5.2e-09  Score=96.23  Aligned_cols=84  Identities=13%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .++++|||||||+|+++..++..+  .+|+|+|+++.+++.|++|+..++   +++++.+|+++....            
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~------------   87 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE------------   87 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------------
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc------------
Confidence            467899999999999999999986  379999999999999999998664   699999999875321            


Q ss_pred             CCCeeEE-EecCCCcccHHHHH
Q 017450          215 SSGFAKV-VANIPFNISTDVIK  235 (371)
Q Consensus       215 ~~~~d~V-VaNlPy~iss~il~  235 (371)
                      ...+|+| ++|.=-.+..+++.
T Consensus        88 ~~~~D~IviaGmGg~lI~~IL~  109 (230)
T 3lec_A           88 ADNIDTITICGMGGRLIADILN  109 (230)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHH
T ss_pred             ccccCEEEEeCCchHHHHHHHH
Confidence            1257865 57654333334443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.87  E-value=8.3e-09  Score=91.31  Aligned_cols=74  Identities=15%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      ++ +|||||||+|.++..+++.+.+|+++|+++.+++.++++....+ +++++.+|+.+.++            ..+.+|
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~------------~~~~fD   96 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI------------VADAWE   96 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSC------------CTTTCS
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCC------------CcCCcc
Confidence            55 99999999999999999998999999999999999999886543 79999999988753            235799


Q ss_pred             EEEecCCC
Q 017450          220 KVVANIPF  227 (371)
Q Consensus       220 ~VVaNlPy  227 (371)
                      +|+++..+
T Consensus        97 ~v~~~~~~  104 (202)
T 2kw5_A           97 GIVSIFCH  104 (202)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEhhc
Confidence            99987653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.87  E-value=2.3e-09  Score=100.40  Aligned_cols=88  Identities=17%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             HHHHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc----------C-CCeEEEEcccc
Q 017450          131 DQLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS----------I-DQLKVLQEDFV  197 (371)
Q Consensus       131 ~~i~~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~----------~-~~v~vi~gD~~  197 (371)
                      +.+.+.+.+.++  ++|||+|||+|..+..++..|++|++||+++.+++.++++++.          . .+++++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            345566666677  8999999999999999999999999999999987777766431          1 36899999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++...           ..+.||+|+.|+||..
T Consensus       156 ~~L~~-----------~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          156 TALTD-----------ITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHSTT-----------CSSCCSEEEECCCCCC
T ss_pred             HHHHh-----------CcccCCEEEEcCCCCC
Confidence            75211           1236999999999964

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=8.2e-09  Score=94.28  Aligned_cols=81  Identities=12%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.. ..+++++++|+.+.+......       ....+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~~-------~~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIH-------SEIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHHHH-------HHHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc-ccCceEEECcccccccccccc-------cccCc
Confidence            4567899999999999999999998899999999999999999884 348999999999876532110       11347


Q ss_pred             eEEEecCCC
Q 017450          219 AKVVANIPF  227 (371)
Q Consensus       219 d~VVaNlPy  227 (371)
                      |+|+++..+
T Consensus       126 d~v~~~~~~  134 (245)
T 3ggd_A          126 ANIYMRTGF  134 (245)
T ss_dssp             CEEEEESSS
T ss_pred             cEEEEcchh
Confidence            889887544

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.85  E-value=6e-09  Score=99.67  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ...+.+|||||||+|.++..+++..  .+|++||+|+.+++.|++++..      .++++++.+|+.+.-.         
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---------  163 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---------  163 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh---------
Confidence            3467899999999999999999873  6999999999999999998753      4589999999976421         


Q ss_pred             hhccCCCeeEEEecCCCc
Q 017450          211 RRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy~  228 (371)
                        ...+.||+|++|+|..
T Consensus       164 --~~~~~fD~Ii~d~~~~  179 (304)
T 2o07_A          164 --QNQDAFDVIITDSSDP  179 (304)
T ss_dssp             --TCSSCEEEEEEECC--
T ss_pred             --hCCCCceEEEECCCCC
Confidence              1236799999998764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.85  E-value=9.9e-09  Score=108.80  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---------------------------------------
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---------------------------------------  163 (371)
                      -.+.+.+++.|+..+...++..|||++||+|.+....+..+                                       
T Consensus       172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            34678899999999998889999999999999988877642                                       


Q ss_pred             -----CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          164 -----ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       164 -----~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                           .+|+|+|+|+.+++.|+.|....+   .+++.++|+.++...          ...+.+|+||+||||..
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~----------~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP----------LPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS----------CTTCCCCEEEECCCCCC
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc----------cccCCCCEEEeCCCccc
Confidence                 479999999999999999987654   489999999886421          01126899999999964

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.85  E-value=4.6e-09  Score=98.97  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .+.+|||||||+|.++..+++. + .+|++||+|+.+++.|++++..      .++++++.+|+.+.-.           
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-----------  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-----------  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-----------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-----------
Confidence            5689999999999999999987 4 6999999999999999998742      3589999999986421           


Q ss_pred             ccCCCeeEEEecCCCc
Q 017450          213 KSSSGFAKVVANIPFN  228 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy~  228 (371)
                      ...+.||+|++|+|+.
T Consensus       144 ~~~~~fD~Ii~d~~~~  159 (275)
T 1iy9_A          144 KSENQYDVIMVDSTEP  159 (275)
T ss_dssp             TCCSCEEEEEESCSSC
T ss_pred             hCCCCeeEEEECCCCC
Confidence            1236799999998764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.85  E-value=8.7e-09  Score=106.68  Aligned_cols=75  Identities=16%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .+-+|||||||.|.++..||+.|++|+|||.++.+++.|+......+  ++++.++|+.++...          ...+.|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~~f  135 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA----------LEEGEF  135 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH----------CCTTSC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh----------ccCCCc
Confidence            46799999999999999999999999999999999999999887654  789999999886321          134679


Q ss_pred             eEEEecC
Q 017450          219 AKVVANI  225 (371)
Q Consensus       219 d~VVaNl  225 (371)
                      |+|++.=
T Consensus       136 D~v~~~e  142 (569)
T 4azs_A          136 DLAIGLS  142 (569)
T ss_dssp             SEEEEES
T ss_pred             cEEEECc
Confidence            9998753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.85  E-value=7.6e-09  Score=98.82  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhc------cCCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~------~~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .++.+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++.      ..++++++.+|+.+....         
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---------  164 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ---------  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS---------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh---------
Confidence            46789999999999999999987  4699999999999999999873      235899999999876421         


Q ss_pred             hccCCCeeEEEecCCCcc
Q 017450          212 RKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~i  229 (371)
                       ...+.||+|++|.+...
T Consensus       165 -~~~~~fDvIi~d~~~~~  181 (304)
T 3bwc_A          165 -TPDNTYDVVIIDTTDPA  181 (304)
T ss_dssp             -SCTTCEEEEEEECC---
T ss_pred             -ccCCceeEEEECCCCcc
Confidence             02367999999987643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.85  E-value=7.8e-09  Score=95.10  Aligned_cols=77  Identities=19%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhc--------cCCCeEEEEccccc-chhhhhhhhH
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--------SIDQLKVLQEDFVK-CHIRSHMLSL  208 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~--------~~~~v~vi~gD~~~-~~~~~~~~~l  208 (371)
                      .++.+|||||||+|.++..|++.  +.+|+|||+++.|++.|++++.        ...|++++++|+.+ ++.      .
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~------~  118 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPN------F  118 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHH------H
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhh------h
Confidence            35679999999999999999987  4689999999999999987753        23589999999987 431      0


Q ss_pred             HHhhccCCCeeEEEecCC
Q 017450          209 FERRKSSSGFAKVVANIP  226 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlP  226 (371)
                          ...+.+|.|+.+.|
T Consensus       119 ----~~~~~~D~v~~~~~  132 (235)
T 3ckk_A          119 ----FYKGQLTKMFFLFP  132 (235)
T ss_dssp             ----CCTTCEEEEEEESC
T ss_pred             ----CCCcCeeEEEEeCC
Confidence                12467999998865

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.84  E-value=5.3e-09  Score=102.86  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC----------CCeEEEEcccccchhhhhh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~----------~~v~vi~gD~~~~~~~~~~  205 (371)
                      ..++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.+++++...          ++++++.+|+.++......
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            447889999999999999999985   459999999999999999987422          5899999999886210000


Q ss_pred             hhHHHhhccCCCeeEEEecCCCccc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                       .     ...+.||+|++|..++..
T Consensus       161 -~-----~~~~~fD~V~~~~~l~~~  179 (383)
T 4fsd_A          161 -G-----VPDSSVDIVISNCVCNLS  179 (383)
T ss_dssp             -C-----CCTTCEEEEEEESCGGGC
T ss_pred             -C-----CCCCCEEEEEEccchhcC
Confidence             0     123679999999876543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.84  E-value=1e-08  Score=98.35  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHHH
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ..+.+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++..       .++++++.+|+.+...         
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~---------  146 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE---------  146 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH---------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH---------
Confidence            45689999999999999999987  46999999999999999998753       3589999999987421         


Q ss_pred             hhccCCCeeEEEecCCCcc
Q 017450          211 RRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy~i  229 (371)
                        ...+.||+|+++.+...
T Consensus       147 --~~~~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          147 --RTEERYDVVIIDLTDPV  163 (314)
T ss_dssp             --HCCCCEEEEEEECCCCB
T ss_pred             --hcCCCccEEEECCCCcc
Confidence              12467999999987755

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.83  E-value=9.8e-09  Score=91.60  Aligned_cols=80  Identities=20%  Similarity=0.261  Sum_probs=65.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      .+..++..  +.++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++    +++++.+|+.+++        
T Consensus        33 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~--------   98 (211)
T 3e23_A           33 TLTKFLGE--LPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD--------   98 (211)
T ss_dssp             HHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC--------
T ss_pred             HHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC--------
Confidence            33444433  346789999999999999999999999999999999999999987    5778899998775        


Q ss_pred             HHhhccCCCeeEEEecCCC
Q 017450          209 FERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy  227 (371)
                           ..+.||+|+++..+
T Consensus        99 -----~~~~fD~v~~~~~l  112 (211)
T 3e23_A           99 -----AIDAYDAVWAHACL  112 (211)
T ss_dssp             -----CCSCEEEEEECSCG
T ss_pred             -----CCCcEEEEEecCch
Confidence                 13679999988654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.83  E-value=4.9e-09  Score=94.18  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHH----hcc--CCCeEEEEcccccchhhh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER----FAS--IDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~----~~~--~~~v~vi~gD~~~~~~~~  203 (371)
                      ..+..+...++.+|||||||+|.++..+++.  +.+|+|||+++.|++.+.++    ...  .++++++++|+.++++. 
T Consensus        18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~-   96 (218)
T 3mq2_A           18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL-   96 (218)
T ss_dssp             HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC-
T ss_pred             HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC-
Confidence            3445556678899999999999999999998  67999999999988864322    222  24899999999987642 


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                 .+. |.++..+++
T Consensus        97 -----------~~~-d~v~~~~~~  108 (218)
T 3mq2_A           97 -----------SGV-GELHVLMPW  108 (218)
T ss_dssp             -----------CCE-EEEEEESCC
T ss_pred             -----------CCC-CEEEEEccc
Confidence                       233 777766664

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.83  E-value=8.1e-09  Score=94.68  Aligned_cols=59  Identities=17%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccccc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~  198 (371)
                      .++++|||||||+|+++..++..+  .+|+|+|+|+.+++.|++|...++   +++++.+|+++
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~   77 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA   77 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh
Confidence            467899999999999999999975  489999999999999999998664   69999999975

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.83  E-value=1.4e-08  Score=94.91  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      +.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|++++...   .+++++.+|+.+.++.           .
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----------~  130 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----------L  130 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----------C
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-----------C
Confidence            46788999999999999999988865 9999999999999999998754   3689999999887541           2


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+.||+|+++...
T Consensus       131 ~~~fD~v~~~~~l  143 (298)
T 1ri5_A          131 GKEFDVISSQFSF  143 (298)
T ss_dssp             SSCEEEEEEESCG
T ss_pred             CCCcCEEEECchh
Confidence            3679999987554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.83  E-value=1.1e-08  Score=108.74  Aligned_cols=92  Identities=10%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhc--------cCCCeEEEEccc
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFA--------SIDQLKVLQEDF  196 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~--------~~~~v~vi~gD~  196 (371)
                      ..++.+++.+...++.+|||||||+|.++..|++.+   .+|+|||+++.|++.|++++.        ..++++++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            456667777776788999999999999999999987   699999999999999998654        124799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCC-cccH
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NIST  231 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy-~iss  231 (371)
                      .++++.            .+.||+|+++-.+ ++..
T Consensus       788 ~dLp~~------------d~sFDlVV~~eVLeHL~d  811 (950)
T 3htx_A          788 LEFDSR------------LHDVDIGTCLEVIEHMEE  811 (950)
T ss_dssp             TSCCTT------------SCSCCEEEEESCGGGSCH
T ss_pred             HhCCcc------------cCCeeEEEEeCchhhCCh
Confidence            987652            3679999987554 3443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.83  E-value=1.4e-08  Score=92.05  Aligned_cols=82  Identities=16%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~  206 (371)
                      ...+.+...+.  ++.+|||||||+|.++..+++. .+|+++|+++.+++.++++.... .+++++.+|+.+.++     
T Consensus        22 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----   93 (243)
T 3d2l_A           22 EWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL-----   93 (243)
T ss_dssp             HHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC-----
T ss_pred             HHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCC-----
Confidence            45556666654  5689999999999999999988 89999999999999999988654 379999999987643     


Q ss_pred             hHHHhhccCCCeeEEEecC
Q 017450          207 SLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNl  225 (371)
                              ...+|+|+++.
T Consensus        94 --------~~~fD~v~~~~  104 (243)
T 3d2l_A           94 --------PEPVDAITILC  104 (243)
T ss_dssp             --------SSCEEEEEECT
T ss_pred             --------CCCcCEEEEeC
Confidence                    25799999864

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.83  E-value=1.2e-08  Score=93.98  Aligned_cols=78  Identities=21%  Similarity=0.235  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc----------CCCeEEEEccccc-chhhhhhh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVK-CHIRSHML  206 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~----------~~~v~vi~gD~~~-~~~~~~~~  206 (371)
                      .++.+|||||||+|.++..++..+  .+|+|||+++.+++.+++++..          .++++++.+|+.+ ++..    
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~----  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF----  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT----
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh----
Confidence            467899999999999999999975  5899999999999999987653          2589999999987 3210    


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                            .....+|.|+.+.|-
T Consensus       124 ------~~~~~~d~v~~~~p~  138 (246)
T 2vdv_E          124 ------FEKGQLSKMFFCFPD  138 (246)
T ss_dssp             ------SCTTCEEEEEEESCC
T ss_pred             ------ccccccCEEEEECCC
Confidence                  123568888877553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.82  E-value=8.5e-09  Score=104.66  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450          128 EINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (371)
Q Consensus       128 ~v~~~i~~~l~~~--~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~  200 (371)
                      .....++..+.+.  ++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...  .+++++++|+.+++
T Consensus       102 ~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          102 ASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred             HHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence            3344445566777  8999999999999999999986   368999999999999999998754  38999999998864


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ..           ..+.||.|+.|+|+.
T Consensus       182 ~~-----------~~~~fD~Il~D~PcS  198 (479)
T 2frx_A          182 AA-----------VPEMFDAILLDAPCS  198 (479)
T ss_dssp             HH-----------STTCEEEEEEECCCC
T ss_pred             hh-----------ccccCCEEEECCCcC
Confidence            31           235799999999984

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.82  E-value=1e-08  Score=102.49  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=80.6

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~  199 (371)
                      +.++......++..+...++++|||+|||+|..|..+++..  .+|+|+|+++.+++.+++++...+ +++++++|+.+.
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~  307 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  307 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhc
Confidence            44555666777788888899999999999999999999974  699999999999999999987655 689999999886


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      +..          .....||.|+.|+|+..+
T Consensus       308 ~~~----------~~~~~fD~Vl~D~Pcsg~  328 (429)
T 1sqg_A          308 SQW----------CGEQQFDRILLDAPCSAT  328 (429)
T ss_dssp             HHH----------HTTCCEEEEEEECCCCCG
T ss_pred             hhh----------cccCCCCEEEEeCCCCcc
Confidence            421          123579999999998653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.82  E-value=8.9e-09  Score=98.79  Aligned_cols=95  Identities=14%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~  201 (371)
                      ......++..+.+.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.++++++..+  +++++++|+.++..
T Consensus        88 d~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~  167 (309)
T 2b9e_A           88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  167 (309)
T ss_dssp             CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence            333445556778889999999999999999999985   3689999999999999999998654  89999999988653


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ..         .....||.|+.|+|+.-+
T Consensus       168 ~~---------~~~~~fD~Vl~D~PcSg~  187 (309)
T 2b9e_A          168 SD---------PRYHEVHYILLDPSCSGS  187 (309)
T ss_dssp             TC---------GGGTTEEEEEECCCCCC-
T ss_pred             cc---------cccCCCCEEEEcCCcCCC
Confidence            21         011469999999998643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.82  E-value=8.9e-09  Score=95.47  Aligned_cols=61  Identities=13%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccch
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~  200 (371)
                      .++++|||||||+|+++..++..+  .+|+|+|+|+.+++.|++|+..++   +++++.+|.++..
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~   85 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI   85 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence            467899999999999999999985  379999999999999999987664   5999999998753

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.81  E-value=5.6e-09  Score=95.39  Aligned_cols=78  Identities=9%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCC-HHHHHHH---HHHhccC--CCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKD-QHMVGLV---RERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d-~~~i~~a---~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .++++|||||||+|.++..+++.  +.+|+|||++ +.|++.|   +++....  ++++++.+|+.+++..         
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~---------   93 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE---------   93 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG---------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh---------
Confidence            47789999999999999999954  6789999999 7777776   6665443  4899999999987431         


Q ss_pred             hccCCCeeEEEecCCCc
Q 017450          212 RKSSSGFAKVVANIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~  228 (371)
                        ..+.++.+++|+|+.
T Consensus        94 --~~d~v~~i~~~~~~~  108 (225)
T 3p2e_A           94 --LKNIADSISILFPWG  108 (225)
T ss_dssp             --GTTCEEEEEEESCCH
T ss_pred             --ccCeEEEEEEeCCCc
Confidence              125578888998864

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.80  E-value=2.9e-08  Score=93.47  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeC-CHHHHHHHHHHh-----ccC-------CCeEEEEc
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK-DQHMVGLVRERF-----ASI-------DQLKVLQE  194 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~-d~~~i~~a~~~~-----~~~-------~~v~vi~g  194 (371)
                      +++.+.......++.+|||||||+|.++..++..+. +|+|+|+ ++.+++.++++.     ...       ++++++..
T Consensus        67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~  146 (281)
T 3bzb_A           67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY  146 (281)
T ss_dssp             HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred             HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence            445555555456788999999999999999999876 8999999 899999999998     332       25777766


Q ss_pred             ccccchhhhhhhhHHHhhccCCCeeEEEe-cCCCcc
Q 017450          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVA-NIPFNI  229 (371)
Q Consensus       195 D~~~~~~~~~~~~l~~~~~~~~~~d~VVa-NlPy~i  229 (371)
                      |..+....     +... ...+.||+|++ +..|+.
T Consensus       147 ~~~~~~~~-----~~~~-~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          147 RWGDSPDS-----LQRC-TGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             CTTSCTHH-----HHHH-HSCSSBSEEEEESCCSCG
T ss_pred             cCCCccHH-----HHhh-ccCCCCCEEEEeCcccCh
Confidence            55432100     1000 02357999886 777765

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.80  E-value=1.9e-08  Score=89.83  Aligned_cols=83  Identities=11%  Similarity=0.048  Sum_probs=61.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~  206 (371)
                      ...+...+  .++++|||+|||+|.++..++..  +.+|+|+|+|++|++.+++++...+ ..++..+|.....      
T Consensus        40 Y~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~------  111 (200)
T 3fzg_A           40 YTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDV------  111 (200)
T ss_dssp             HHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHH------
T ss_pred             HHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccC------
Confidence            34444445  35789999999999999999876  5699999999999999999997654 2244446665432      


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                             .++.+|+|+++--+
T Consensus       112 -------~~~~~DvVLa~k~L  125 (200)
T 3fzg_A          112 -------YKGTYDVVFLLKML  125 (200)
T ss_dssp             -------TTSEEEEEEEETCH
T ss_pred             -------CCCCcChhhHhhHH
Confidence                   34678999986543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.80  E-value=2.7e-08  Score=94.66  Aligned_cols=78  Identities=15%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+.+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++..      .++++++.+|+.+...          
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~----------  158 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----------  158 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----------
Confidence            35689999999999999999987  36999999999999999998742      3589999999977421          


Q ss_pred             hccCCCeeEEEecCCCc
Q 017450          212 RKSSSGFAKVVANIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~  228 (371)
                       ...+.||+|++|+|..
T Consensus       159 -~~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          159 -KFKNEFDVIIIDSTDP  174 (296)
T ss_dssp             -GCSSCEEEEEEEC---
T ss_pred             -hCCCCceEEEEcCCCc
Confidence             1235799999998654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.79  E-value=2.2e-08  Score=91.36  Aligned_cols=74  Identities=11%  Similarity=0.100  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++...  .+++++.+|+.++++            ..+.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~------------~~~~  146 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP------------EPDS  146 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC------------CSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC------------CCCC
Confidence            57899999999999999998874 59999999999999999998754  268999999887653            2347


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      ||+|+++..
T Consensus       147 fD~v~~~~~  155 (241)
T 2ex4_A          147 YDVIWIQWV  155 (241)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEcch
Confidence            999998744

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.79  E-value=5.9e-09  Score=105.11  Aligned_cols=93  Identities=16%  Similarity=0.155  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~  199 (371)
                      ++......++..+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...+  ++.++++|+.++
T Consensus        89 vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l  168 (456)
T 3m4x_A           89 SQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAEL  168 (456)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHH
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence            33344455666778889999999999999999999986   3589999999999999999987644  799999999876


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ...           ..+.||.|+.|+|+.
T Consensus       169 ~~~-----------~~~~FD~Il~DaPCS  186 (456)
T 3m4x_A          169 VPH-----------FSGFFDRIVVDAPCS  186 (456)
T ss_dssp             HHH-----------HTTCEEEEEEECCCC
T ss_pred             hhh-----------ccccCCEEEECCCCC
Confidence            421           136799999999974

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.79  E-value=1e-08  Score=97.28  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHH--h-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHh
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLN--A-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~--~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .+.++.+|||||||+|.++..++.  . +.+|+|+|+++.+++.+++++...+   +++++++|+.++++          
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  184 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----------  184 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----------
Confidence            456789999999999999999852  2 5699999999999999999987653   59999999998753          


Q ss_pred             hccCCCeeEEEecCCCc
Q 017450          212 RKSSSGFAKVVANIPFN  228 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~  228 (371)
                        . +.||+|++|.+++
T Consensus       185 --~-~~fD~v~~~~~~~  198 (305)
T 3ocj_A          185 --R-EGYDLLTSNGLNI  198 (305)
T ss_dssp             --C-SCEEEEECCSSGG
T ss_pred             --c-CCeEEEEECChhh
Confidence              2 6799999987664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.79  E-value=1.5e-08  Score=95.90  Aligned_cols=45  Identities=20%  Similarity=0.368  Sum_probs=40.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      ++.+|||||||+|.++..++..  +.+|+|||+|+.+++.|++++..
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence            6789999999999999999997  67999999999999999988653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.78  E-value=2.5e-08  Score=90.18  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++   ++++++.+|+.++++             .+.+|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~~-------------~~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL---PDATLHQGDMRDFRL-------------GRKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---TTCEEEECCTTTCCC-------------SSCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---CCCEEEECCHHHccc-------------CCCCc
Confidence            46789999999999999999998889999999999999999886   379999999987643             25699


Q ss_pred             EEEe
Q 017450          220 KVVA  223 (371)
Q Consensus       220 ~VVa  223 (371)
                      +|++
T Consensus       103 ~v~~  106 (239)
T 3bxo_A          103 AVVS  106 (239)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9994

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.78  E-value=3.1e-08  Score=91.59  Aligned_cols=69  Identities=25%  Similarity=0.340  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++...  +  ++.+|+.++++            ..+.||.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~--~--~~~~d~~~~~~------------~~~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK--N--VVEAKAEDLPF------------PSGAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS--C--EEECCTTSCCS------------CTTCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC--C--EEECcHHHCCC------------CCCCEEE
Confidence            678999999999999999999999999999999999999998752  2  88899988754            2357999


Q ss_pred             EEecC
Q 017450          221 VVANI  225 (371)
Q Consensus       221 VVaNl  225 (371)
                      |+++.
T Consensus       118 v~~~~  122 (260)
T 2avn_A          118 VLALG  122 (260)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            99864

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.78  E-value=6.3e-09  Score=105.08  Aligned_cols=95  Identities=20%  Similarity=0.205  Sum_probs=75.7

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVK  198 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~  198 (371)
                      +.+.......++..+.+.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...+ .++++++|+.+
T Consensus        83 ~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~  162 (464)
T 3m6w_A           83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRA  162 (464)
T ss_dssp             EEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHH
T ss_pred             EEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            3334444555666778889999999999999999999986   2589999999999999999987543 38999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      +...           ..+.||.|+.|+|+.
T Consensus       163 l~~~-----------~~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          163 LAEA-----------FGTYFHRVLLDAPCS  181 (464)
T ss_dssp             HHHH-----------HCSCEEEEEEECCCC
T ss_pred             hhhh-----------ccccCCEEEECCCcC
Confidence            6421           136799999999984

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.77  E-value=1e-08  Score=93.51  Aligned_cols=83  Identities=14%  Similarity=0.266  Sum_probs=63.5

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       129 v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +...+...+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++      ++++.+|+.+....     
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~-----   96 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKS-----   96 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT------SEEECSCHHHHHHT-----
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cceeeccHHHHhhh-----
Confidence            3344444333 34678999999999999999999999999999999999998876      77888998775211     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                           ...+.||+|+++-.+
T Consensus        97 -----~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           97 -----LPDKYLDGVMISHFV  111 (240)
T ss_dssp             -----SCTTCBSEEEEESCG
T ss_pred             -----cCCCCeeEEEECCch
Confidence                 124679999987443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.77  E-value=1.5e-08  Score=97.64  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+|+.+++.|++++..      .++++++.+|+.+....         
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------  185 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---------  185 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh---------
Confidence            45689999999999999999987  46999999999999999999864      35899999999764211         


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                        ..+.||+|++|++
T Consensus       186 --~~~~fDvIi~d~~  198 (321)
T 2pt6_A          186 --VTNTYDVIIVDSS  198 (321)
T ss_dssp             --CCSCEEEEEEECC
T ss_pred             --cCCCceEEEECCc
Confidence              2357999999974

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.77  E-value=2.9e-08  Score=105.22  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKC  199 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~~~  199 (371)
                      .++.....++....  ++++|||+|||+|.++..++..|+ +|++||+|+.+++.|++|+..++    +++++++|+.++
T Consensus       525 ~d~r~~r~~l~~~~--~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~  602 (703)
T 3v97_A          525 LDHRIARRMLGQMS--KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW  602 (703)
T ss_dssp             GGGHHHHHHHHHHC--TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH
T ss_pred             ccHHHHHHHHHHhc--CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence            33444444444332  688999999999999999998876 69999999999999999987553    699999999874


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss  231 (371)
                      ...           ....||+|+.|+|+...+
T Consensus       603 l~~-----------~~~~fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          603 LRE-----------ANEQFDLIFIDPPTFSNS  623 (703)
T ss_dssp             HHH-----------CCCCEEEEEECCCSBC--
T ss_pred             HHh-----------cCCCccEEEECCccccCC
Confidence            211           236799999999986543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.77  E-value=1.7e-08  Score=97.81  Aligned_cols=78  Identities=17%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ...+.+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++..      .++++++.+|+.+....        
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~--------  189 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN--------  189 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT--------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh--------
Confidence            346789999999999999999987  46999999999999999998753      35899999999875211        


Q ss_pred             hhccCCCeeEEEecCC
Q 017450          211 RRKSSSGFAKVVANIP  226 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlP  226 (371)
                        ...+.||+|++|++
T Consensus       190 --~~~~~fDlIi~d~~  203 (334)
T 1xj5_A          190 --AAEGSYDAVIVDSS  203 (334)
T ss_dssp             --SCTTCEEEEEECCC
T ss_pred             --ccCCCccEEEECCC
Confidence              12357999999875

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.77  E-value=1.9e-08  Score=95.76  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---------CCeEEEEcc
Q 017450          128 EINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQED  195 (371)
Q Consensus       128 ~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---------~~v~vi~gD  195 (371)
                      .++..++..+..  .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++....         .+++++.+|
T Consensus        19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            344445544432  36789999999999999999976 569999999999999999987532         378999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      +.+.++.+...      ...+.+|+|+++...+..
T Consensus        99 ~~~~~~~~~~~------~~~~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A           99 SSKELLIDKFR------DPQMCFDICSCQFVCHYS  127 (313)
T ss_dssp             TTTSCSTTTCS------STTCCEEEEEEETCGGGG
T ss_pred             ccccchhhhcc------cCCCCEEEEEEecchhhc
Confidence            98875211100      012479999998776543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.76  E-value=2.6e-08  Score=88.73  Aligned_cols=69  Identities=20%  Similarity=0.255  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      ++.+|||||||+|.++..+   +. +|+++|+++.+++.++++.   ++++++.+|+.++++            ..+.+|
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~------------~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALPF------------PGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCCS------------CSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCCC------------CCCcEE
Confidence            7789999999999999888   66 9999999999999999987   489999999988753            235799


Q ss_pred             EEEecCCC
Q 017450          220 KVVANIPF  227 (371)
Q Consensus       220 ~VVaNlPy  227 (371)
                      +|+++-.+
T Consensus        98 ~v~~~~~l  105 (211)
T 2gs9_A           98 VVLLFTTL  105 (211)
T ss_dssp             EEEEESCT
T ss_pred             EEEEcChh
Confidence            99987654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.76  E-value=2.4e-08  Score=85.20  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             HHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       132 ~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+++... ..++++|||+|||+|.++..+++.   +.+++++|+++ +++.        ++++++.+|+.+.+..+....
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhhc
Confidence            3444444 567889999999999999999987   36999999999 6532        489999999988652110000


Q ss_pred             HHHhhccCCCeeEEEecCCCccc
Q 017450          208 LFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      .    .....+|.|++|.|++..
T Consensus        83 ~----~~~~~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           83 R----VGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             H----HTTCCEEEEEECCCCCCC
T ss_pred             c----CCCCceeEEEECCCcccc
Confidence            0    123579999999987643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.74  E-value=4.6e-08  Score=87.03  Aligned_cols=82  Identities=23%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ..++.+|||+|||+|.+|..+++.+.+|+|||+++..         ..++++++++|+.+....+...+.... ...+.+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~~~~~-~~~~~~   92 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDRALRE-EGIEKV   92 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHHHHHH-HTCSSE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHHHhhc-ccCCcc
Confidence            4578899999999999999999998899999999741         234899999999886543222111110 001379


Q ss_pred             eEEEecCCCccc
Q 017450          219 AKVVANIPFNIS  230 (371)
Q Consensus       219 d~VVaNlPy~is  230 (371)
                      |+|++|.+.+.+
T Consensus        93 D~Vlsd~~~~~~  104 (191)
T 3dou_A           93 DDVVSDAMAKVS  104 (191)
T ss_dssp             EEEEECCCCCCC
T ss_pred             eEEecCCCcCCC
Confidence            999999876543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.73  E-value=2.8e-08  Score=93.74  Aligned_cols=77  Identities=19%  Similarity=0.288  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHh----c--------cCCCeEEEEcccccchhhhhhh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERF----A--------SIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~----~--------~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      ..+.+|||||||+|.++..+++.+ .+|++||+|+.+++.|++++    .        ..++++++.+|+.+...     
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~-----  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-----  148 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc-----
Confidence            456899999999999999999884 58999999999999999988    1        13589999999876421     


Q ss_pred             hHHHhhccCCCeeEEEecCCCc
Q 017450          207 SLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            . .+.||+|++|+|..
T Consensus       149 ------~-~~~fD~Ii~d~~~~  163 (281)
T 1mjf_A          149 ------N-NRGFDVIIADSTDP  163 (281)
T ss_dssp             ------H-CCCEEEEEEECCCC
T ss_pred             ------c-cCCeeEEEECCCCC
Confidence                  1 35799999998863

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.72  E-value=1.6e-08  Score=93.03  Aligned_cols=81  Identities=10%  Similarity=0.145  Sum_probs=64.1

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCC----------------------------
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQ----------------------------  188 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~----------------------------  188 (371)
                      ...++.+|||||||+|.++..++..+. +|+|+|+++.+++.+++++...++                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            345678999999999999999998887 999999999999999998865432                            


Q ss_pred             ---e-EEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          189 ---L-KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       189 ---v-~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                         + +++.+|+.+.+....        ...+.||+|+++..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~--------~~~~~fD~v~~~~~  166 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGG--------VSLPPADCLLSTLC  166 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTT--------CCCCCEEEEEEESC
T ss_pred             hhhheeEEEeeeccCCCCCc--------cccCCccEEEEhhh
Confidence               7 899999988643100        11267999998754

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.72  E-value=3.7e-08  Score=99.09  Aligned_cols=94  Identities=17%  Similarity=0.202  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~  201 (371)
                      ......+...+.+.++++|||+|||+|..|..+++.  + .+|+|+|+++.+++.+++++...+  +++++++|+.+.+.
T Consensus       245 d~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~  324 (450)
T 2yxl_A          245 EEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE  324 (450)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS
T ss_pred             CchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch
Confidence            344455566778889999999999999999999985  3 689999999999999999987554  89999999987642


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      .          ...+.||.|+.|+|+..+
T Consensus       325 ~----------~~~~~fD~Vl~D~Pcsg~  343 (450)
T 2yxl_A          325 I----------IGEEVADKVLLDAPCTSS  343 (450)
T ss_dssp             S----------SCSSCEEEEEEECCCCCG
T ss_pred             h----------hccCCCCEEEEcCCCCCC
Confidence            1          012569999999998543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.71  E-value=2.7e-08  Score=95.60  Aligned_cols=77  Identities=17%  Similarity=0.237  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+.+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++..      .++++++.+|+.+...          
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~----------  176 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK----------  176 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH----------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH----------
Confidence            35689999999999999999987  46999999999999999999864      3589999999987421          


Q ss_pred             hccCCCeeEEEecCCC
Q 017450          212 RKSSSGFAKVVANIPF  227 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy  227 (371)
                       ...+.||+|++|++.
T Consensus       177 -~~~~~fD~Ii~d~~~  191 (314)
T 2b2c_A          177 -NHKNEFDVIITDSSD  191 (314)
T ss_dssp             -HCTTCEEEEEECCC-
T ss_pred             -hcCCCceEEEEcCCC
Confidence             123679999999853

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.70  E-value=4.4e-08  Score=92.58  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ..++++|||||||+|.++..+++.  +.+|++||+|+.+++.+++++..      .++++++.+|+.+....        
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--------  147 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--------  147 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh--------
Confidence            346789999999999999999987  36999999999999999999864      35899999999875211        


Q ss_pred             hhccCCCeeEEEecCCC
Q 017450          211 RRKSSSGFAKVVANIPF  227 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy  227 (371)
                         ..+.||+|+++.+.
T Consensus       148 ---~~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          148 ---VTNTYDVIIVDSSD  161 (283)
T ss_dssp             ---CCSCEEEEEEECCC
T ss_pred             ---CCCCceEEEEcCCC
Confidence               23679999998754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.70  E-value=5e-08  Score=93.82  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .+|||||||+|.++..+++.  +.+|++||+|+.+++.+++++...  ++++++.+|+.++...          ...+.|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~----------~~~~~f  160 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES----------FTPASR  160 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT----------CCTTCE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh----------ccCCCC
Confidence            39999999999999999983  679999999999999999998643  5899999999875211          123679


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |+|+++++
T Consensus       161 DvIi~D~~  168 (317)
T 3gjy_A          161 DVIIRDVF  168 (317)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99999864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.70  E-value=8.6e-09  Score=96.56  Aligned_cols=72  Identities=10%  Similarity=0.026  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      ..+++|||||||+|.++..+++.+.+|++||+|+.+++.|++++..      .++++++.+|+.++.             
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-------------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-------------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-------------
Confidence            3568999999999999999987767899999999999999987643      358999999998752             


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                        +.||+|+++.+
T Consensus       138 --~~fD~Ii~d~~  148 (262)
T 2cmg_A          138 --KKYDLIFCLQE  148 (262)
T ss_dssp             --CCEEEEEESSC
T ss_pred             --hhCCEEEECCC
Confidence              46999999864

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.69  E-value=8.5e-08  Score=90.29  Aligned_cols=92  Identities=15%  Similarity=0.263  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      |-+++.+++.+.+.++..+||.+||.|..|..+++.+.+|+|+|+|+.+++.+++ +.. ++++++++|+.+++..    
T Consensus         8 pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~----   81 (285)
T 1wg8_A            8 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRH----   81 (285)
T ss_dssp             CTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHH----
T ss_pred             hHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHH----
Confidence            3457788888888899999999999999999999988899999999999999999 765 6899999999987531    


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                        ++. ...+.+|.|+.||.+
T Consensus        82 --L~~-~g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           82 --LAA-LGVERVDGILADLGV   99 (285)
T ss_dssp             --HHH-TTCSCEEEEEEECSC
T ss_pred             --HHH-cCCCCcCEEEeCCcc
Confidence              111 123569999999886

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.69  E-value=6.2e-08  Score=91.11  Aligned_cols=100  Identities=14%  Similarity=0.022  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCcc---cHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          127 SEINDQLAAAAA-VQEGDIVLEIGPGT---GSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       127 ~~v~~~i~~~l~-~~~~~~VLEIG~G~---G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      ..++..++..+. .....+|||||||+   |.++..+++.  +.+|+++|+|+.|++.+++++...++++++.+|+.+.+
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHH
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCch
Confidence            345556666655 33457999999999   9988777664  57999999999999999999876668999999998754


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ......++.+. .+.+.+|.|+++.-+
T Consensus       142 ~~~~~~~~~~~-~d~~~~d~v~~~~vl  167 (274)
T 2qe6_A          142 YILNHPDVRRM-IDFSRPAAIMLVGML  167 (274)
T ss_dssp             HHHHSHHHHHH-CCTTSCCEEEETTTG
T ss_pred             hhhccchhhcc-CCCCCCEEEEEechh
Confidence            21000000000 122468999887543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.66  E-value=6e-08  Score=86.74  Aligned_cols=80  Identities=21%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .+++.+. .++.+|||||||+|.++..+++.+.+++++|+++.+++.++++.     .+++.+|+.+....         
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~---------   88 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMP---------   88 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCC---------
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCC---------
Confidence            3444444 57789999999999999999998889999999999999998764     36888998764221         


Q ss_pred             hccCCCeeEEEecCCC
Q 017450          212 RKSSSGFAKVVANIPF  227 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy  227 (371)
                       ...+.+|+|+++-.+
T Consensus        89 -~~~~~fD~v~~~~~l  103 (230)
T 3cc8_A           89 -YEEEQFDCVIFGDVL  103 (230)
T ss_dssp             -SCTTCEEEEEEESCG
T ss_pred             -CCCCccCEEEECChh
Confidence             123579999987543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.65  E-value=1.1e-07  Score=91.02  Aligned_cols=90  Identities=10%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          128 EINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       128 ~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      ..+..++..+..  .++.+|||||||+|.++..+++.  +.+++++|++ .+++.+++++...   ++++++.+|+.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred             hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence            345567777776  77889999999999999999987  6799999999 9999999987643   26999999998754


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEec-CCCcccH
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVAN-IPFNIST  231 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaN-lPy~iss  231 (371)
                      +             ++.+|+|+++ ..+++..
T Consensus       229 ~-------------~~~~D~v~~~~~l~~~~~  247 (335)
T 2r3s_A          229 Y-------------GNDYDLVLLPNFLHHFDV  247 (335)
T ss_dssp             C-------------CSCEEEEEEESCGGGSCH
T ss_pred             C-------------CCCCcEEEEcchhccCCH
Confidence            3             2348998874 4445543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.62  E-value=5.4e-08  Score=92.47  Aligned_cols=102  Identities=21%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEE-Ecccccchhhhhhh
Q 017450          130 NDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHML  206 (371)
Q Consensus       130 ~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi-~gD~~~~~~~~~~~  206 (371)
                      +..+++.+.+. ++.+|||||||||.+|..|++.++ +|+|||+++.|++.+.++   .+++... ..|+..+...+   
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~~rv~~~~~~ni~~l~~~~---  146 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---DDRVRSMEQYNFRYAEPVD---  146 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---CTTEEEECSCCGGGCCGGG---
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CcccceecccCceecchhh---
Confidence            44555555554 567999999999999999999865 899999999999885443   2344333 34554443321   


Q ss_pred             hHHHhhccCCCeeEEEecCCCccc----HHHHHHhccCCCc
Q 017450          207 SLFERRKSSSGFAKVVANIPFNIS----TDVIKQLLPMGDI  243 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~is----s~il~~Ll~~g~~  243 (371)
                            .+...||.++++.-|.-.    .++...|.++|.+
T Consensus       147 ------l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~l  181 (291)
T 3hp7_A          147 ------FTEGLPSFASIDVSFISLNLILPALAKILVDGGQV  181 (291)
T ss_dssp             ------CTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEE
T ss_pred             ------CCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEE
Confidence                  112348999998877533    3444445555544

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.60  E-value=1.4e-07  Score=83.33  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh------------
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR------------  202 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~------------  202 (371)
                      +.++.+|||+|||+|.++..+++.    +.+|+|+|+++..         ..++++++++|+.+....            
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhcccccccccc
Confidence            457789999999999999999986    3689999999831         234799999999876400            


Q ss_pred             --hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          203 --SHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       203 --~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                        ....++.+. .....+|.|++|.+.+.
T Consensus        91 ~~~~~~~~~~~-~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           91 NNSVDYKLKEI-LQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             -CHHHHHHHHH-HTTCCEEEEEECCCCCC
T ss_pred             chhhHHHHHhh-cCCCcccEEEeCCCcCC
Confidence              000000000 12357999999977654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.59  E-value=5.5e-08  Score=90.39  Aligned_cols=82  Identities=12%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-----------------------------
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-----------------------------  187 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-----------------------------  187 (371)
                      ...++.+|||||||+|.++..++..+. +|+|+|+++.|++.|++++...+                             
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            445778999999999998888777775 79999999999999998764321                             


Q ss_pred             --CeE-EEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          188 --QLK-VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       188 --~v~-vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                        +++ ++.+|+.+......        ...+.||+|+++.-+
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~--------~~~~~fD~V~~~~~l  166 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAP--------AVLPLADCVLTLLAM  166 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTT--------CCCCCEEEEEEESCH
T ss_pred             HhhhheEEeccccCCCCCCc--------cccCCCCEeeehHHH
Confidence              233 88899887421100        013579999998654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.55  E-value=1.2e-07  Score=89.08  Aligned_cols=55  Identities=13%  Similarity=0.045  Sum_probs=41.4

Q ss_pred             HHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhc
Q 017450          130 NDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       130 ~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ...+...+..  .++.+|||||||+|.++..++.. +.+|+|+|+++.|++.|++++.
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            4455555433  36789999999999955444443 6799999999999999988654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.53  E-value=5.9e-08  Score=96.04  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE-----cccccchhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ-----EDFVKCHIR  202 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~-----gD~~~~~~~  202 (371)
                      ..++.++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++     ++....     +|+..+++ 
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~l~~-  167 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-----GIRVRTDFFEKATADDVRR-  167 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-----TCCEECSCCSHHHHHHHHH-
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-----CCCcceeeechhhHhhccc-
Confidence            4566777777777889999999999999999999999999999999999999876     222222     33333322 


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCC
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                 ..+.||+|+++-.+
T Consensus       168 -----------~~~~fD~I~~~~vl  181 (416)
T 4e2x_A          168 -----------TEGPANVIYAANTL  181 (416)
T ss_dssp             -----------HHCCEEEEEEESCG
T ss_pred             -----------CCCCEEEEEECChH
Confidence                       13679999987554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.53  E-value=1.8e-07  Score=86.34  Aligned_cols=73  Identities=14%  Similarity=0.028  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .++.+|||||||+|.++..+. .+.+++|+|+|+.+++.+++++...+ +.++..+|....++             ++.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~-------------~~~~  169 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-------------AEAG  169 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-------------CCBC
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC-------------CCCc
Confidence            467899999999999999887 66799999999999999999986544 78899999987643             3579


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |+++++.-
T Consensus       170 DvvLllk~  177 (253)
T 3frh_A          170 DLALIFKL  177 (253)
T ss_dssp             SEEEEESC
T ss_pred             chHHHHHH
Confidence            99998754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.52  E-value=4.8e-07  Score=87.75  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~  202 (371)
                      .....+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...+   +++++.+|+.+.++ 
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  254 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-  254 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-
Confidence            44567777777778899999999999999999987  569999999 999999999886542   59999999987643 


Q ss_pred             hhhhhHHHhhccCCCeeEEEecCCC
Q 017450          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                   +..|+|+++..+
T Consensus       255 -------------~~~D~v~~~~vl  266 (359)
T 1x19_A          255 -------------PEADAVLFCRIL  266 (359)
T ss_dssp             -------------CCCSEEEEESCG
T ss_pred             -------------CCCCEEEEechh
Confidence                         223888876554

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.51  E-value=3.5e-07  Score=90.02  Aligned_cols=83  Identities=11%  Similarity=0.032  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccC---------------C--CeEEEEcccccchh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI---------------D--QLKVLQEDFVKCHI  201 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~---------------~--~v~vi~gD~~~~~~  201 (371)
                      ++.+|||+|||+|.++..++.. + .+|+++|+|+.+++.+++|++.+               +  +++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999987 3 58999999999999999998755               3  48999999987532


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                      .           ....||+|+.|+|+. ..+++.
T Consensus       127 ~-----------~~~~fD~I~lDP~~~-~~~~l~  148 (378)
T 2dul_A          127 E-----------RHRYFHFIDLDPFGS-PMEFLD  148 (378)
T ss_dssp             H-----------STTCEEEEEECCSSC-CHHHHH
T ss_pred             h-----------ccCCCCEEEeCCCCC-HHHHHH
Confidence            1           124699999887653 344443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.50  E-value=2.5e-07  Score=88.26  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC--------CeEEEEcccccchhhhhhhhHHHh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~--------~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ++.+|||||||+|..+..++.. +.+|+|||+++.|++.|+++....+        ++++..+|+..-.....   +...
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~---l~~~  124 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS---VREV  124 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH---HHTT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh---hhcc
Confidence            4789999999999766555555 5799999999999999999875432        25677777732111100   0000


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                       ...+.||+|++..-
T Consensus       125 -~~~~~FD~V~~~~~  138 (302)
T 2vdw_A          125 -FYFGKFNIIDWQFA  138 (302)
T ss_dssp             -CCSSCEEEEEEESC
T ss_pred             -ccCCCeeEEEECch
Confidence             12367999987643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.50  E-value=4.7e-07  Score=87.96  Aligned_cols=87  Identities=22%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~  204 (371)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...+   +++++.+|+.+ ++   
T Consensus       171 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---  245 (374)
T 1qzz_A          171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL---  245 (374)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC---
T ss_pred             HHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC---
Confidence            345666667778899999999999999999987  469999999 999999999886543   79999999976 22   


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC-cccH
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF-NIST  231 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy-~iss  231 (371)
                                +..+|+|+++..+ ++..
T Consensus       246 ----------~~~~D~v~~~~vl~~~~~  263 (374)
T 1qzz_A          246 ----------PVTADVVLLSFVLLNWSD  263 (374)
T ss_dssp             ----------SCCEEEEEEESCGGGSCH
T ss_pred             ----------CCCCCEEEEeccccCCCH
Confidence                      1348998886554 3443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.49  E-value=4.4e-08  Score=92.43  Aligned_cols=80  Identities=16%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc---cCC-CeEEE--Ecccccchhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRSH  204 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~---~~~-~v~vi--~gD~~~~~~~~~  204 (371)
                      ..+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |...++++..   ..+ +++++  ++|+.+++    
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----  145 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----  145 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----
Confidence            34444444567889999999999999999998 7999999998 5433322211   112 78899  89998753    


Q ss_pred             hhhHHHhhccCCCeeEEEecCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                                ...||+|+++..
T Consensus       146 ----------~~~fD~Vvsd~~  157 (276)
T 2wa2_A          146 ----------PFQADTVLCDIG  157 (276)
T ss_dssp             ----------CCCCSEEEECCC
T ss_pred             ----------CCCcCEEEECCC
Confidence                      357999999987

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.47  E-value=2.8e-07  Score=91.08  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHhccCC--C--eEEEEcccccchh-hhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHI-RSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~-~~V~aIE~d~~~i~~a~~~~~~~~--~--v~vi~gD~~~~~~-~~~~~~l~~~  211 (371)
                      .++.+|||++||+|.++..++..  | .+|+++|+|+.+++.+++|++.++  +  ++++++|+.++.. .         
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---------  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---------  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC---------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh---------
Confidence            46789999999999999999985  4 589999999999999999998664  3  9999999977521 1         


Q ss_pred             hccCCCeeEEEecCCCcccHHHHH
Q 017450          212 RKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                        ....||+|+.|+ |....+++.
T Consensus       122 --~~~~fD~V~lDP-~g~~~~~l~  142 (392)
T 3axs_A          122 --WGFGFDYVDLDP-FGTPVPFIE  142 (392)
T ss_dssp             --CSSCEEEEEECC-SSCCHHHHH
T ss_pred             --hCCCCcEEEECC-CcCHHHHHH
Confidence              124699999997 554444543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.46  E-value=4.3e-07  Score=81.75  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC-----CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~-----~v~vi~gD~  196 (371)
                      ..+++...+.+...+  .+.++||||||  |++|..|++. +++|++||.|+++++.++++++..+     +++++.||+
T Consensus        14 ~~v~~~~~~~L~~~l--~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda   89 (202)
T 3cvo_A           14 LTMPPAEAEALRMAY--EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDI   89 (202)
T ss_dssp             CCSCHHHHHHHHHHH--HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCC
T ss_pred             ccCCHHHHHHHHHHh--hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCc
Confidence            456666666665533  36789999998  5899999986 6899999999999999999997643     699999998


Q ss_pred             ccc
Q 017450          197 VKC  199 (371)
Q Consensus       197 ~~~  199 (371)
                      .+.
T Consensus        90 ~~~   92 (202)
T 3cvo_A           90 GPT   92 (202)
T ss_dssp             SSB
T ss_pred             hhh
Confidence            764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.46  E-value=6.8e-07  Score=78.33  Aligned_cols=78  Identities=15%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh-C----------CeEEEEeCCHHHHHHHHHHhccCCCeEEE-Ecccccchhhhhhh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA-G----------ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHML  206 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~-~----------~~V~aIE~d~~~i~~a~~~~~~~~~v~vi-~gD~~~~~~~~~~~  206 (371)
                      +.++++|||||||+|.++..+++. +          .+|+|+|+++..         ...+++++ .+|+.+.+......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence            457889999999999999999987 4          789999999842         12478899 99987764322111


Q ss_pred             hHHHhhccCCCeeEEEecCCCcc
Q 017450          207 SLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ..    .....+|+|++|.+.+.
T Consensus        91 ~~----~~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           91 EV----LPGRRADVILSDMAPNA  109 (196)
T ss_dssp             HH----SGGGCEEEEEECCCCCC
T ss_pred             Hh----cCCCCCcEEEeCCCCCC
Confidence            11    12246999999876543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.43  E-value=1e-06  Score=85.20  Aligned_cols=87  Identities=18%  Similarity=0.266  Sum_probs=67.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~  204 (371)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...+   +++++.+|+.+ ++   
T Consensus       172 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---  246 (360)
T 1tw3_A          172 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL---  246 (360)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC---
T ss_pred             HHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC---
Confidence            345666677778899999999999999999987  458999999 999999999886542   79999999976 21   


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC-cccH
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF-NIST  231 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy-~iss  231 (371)
                                +..+|+|+++..+ ++..
T Consensus       247 ----------~~~~D~v~~~~vl~~~~~  264 (360)
T 1tw3_A          247 ----------PRKADAIILSFVLLNWPD  264 (360)
T ss_dssp             ----------SSCEEEEEEESCGGGSCH
T ss_pred             ----------CCCccEEEEcccccCCCH
Confidence                      1348988876544 3443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.42  E-value=6.9e-08  Score=90.53  Aligned_cols=81  Identities=11%  Similarity=0.073  Sum_probs=59.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc---cCC-CeEEE--Ecccccchhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRS  203 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~---~~~-~v~vi--~gD~~~~~~~~  203 (371)
                      +..+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |...+++...   ..+ ++.++  ++|+.+++   
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---  137 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---  137 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---
Confidence            344555544567889999999999999999988 7999999998 5332221110   112 68888  89998753   


Q ss_pred             hhhhHHHhhccCCCeeEEEecCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                                 ...+|+|+++..
T Consensus       138 -----------~~~fD~V~sd~~  149 (265)
T 2oxt_A          138 -----------VERTDVIMCDVG  149 (265)
T ss_dssp             -----------CCCCSEEEECCC
T ss_pred             -----------CCCCcEEEEeCc
Confidence                       357999999877

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.41  E-value=2.4e-07  Score=86.42  Aligned_cols=75  Identities=12%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ..+.+|||||||+|-++..++..  ..+|+|+|+|+.+++.+++++..++ +.++...|...-+             .++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-------------p~~  197 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-------------LDE  197 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-------------CCS
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-------------CCC
Confidence            34779999999999999988876  4699999999999999999997765 6788888887653             346


Q ss_pred             CeeEEEecCCC
Q 017450          217 GFAKVVANIPF  227 (371)
Q Consensus       217 ~~d~VVaNlPy  227 (371)
                      .+|++++|.-+
T Consensus       198 ~~DvaL~lkti  208 (281)
T 3lcv_B          198 PADVTLLLKTL  208 (281)
T ss_dssp             CCSEEEETTCH
T ss_pred             CcchHHHHHHH
Confidence            79999987643

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.40  E-value=4.6e-07  Score=83.16  Aligned_cols=54  Identities=24%  Similarity=0.383  Sum_probs=44.8

Q ss_pred             HHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHh
Q 017450          130 NDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       130 ~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~  183 (371)
                      +..++..+... ++.+|||||||+|.+|..+++.++ +|+|||+++.|++.++++.
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            45556666554 467999999999999999999974 9999999999999987754

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.38  E-value=9.9e-07  Score=85.05  Aligned_cols=84  Identities=12%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             HHHHHhcCCC-CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhh
Q 017450          132 QLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       132 ~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~  205 (371)
                      .++..+...+ +.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...+   +++++.+|+.+.+..   
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---  244 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF---  244 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG---
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc---
Confidence            4555555556 789999999999999999987  569999999 889999999876543   699999999886410   


Q ss_pred             hhHHHhhccCCCeeEEEecCCC
Q 017450          206 LSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                              .+..+|+|+++-..
T Consensus       245 --------~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          245 --------EGGAADVVMLNDCL  258 (352)
T ss_dssp             --------TTCCEEEEEEESCG
T ss_pred             --------CCCCccEEEEeccc
Confidence                    12459998875443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.38  E-value=7.4e-07  Score=80.00  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V  221 (371)
                      +.+|||||||+|.++..++..    +++|+++.+++.++++     +++++.+|+.++++            ..+.+|+|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~~------------~~~~fD~v  106 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-----GVFVLKGTAENLPL------------KDESFDFA  106 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-----TCEEEECBTTBCCS------------CTTCEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-----CCEEEEcccccCCC------------CCCCeeEE
Confidence            789999999999999988765    9999999999999887     68899999987653            23579999


Q ss_pred             EecCCC
Q 017450          222 VANIPF  227 (371)
Q Consensus       222 VaNlPy  227 (371)
                      +++-.+
T Consensus       107 ~~~~~l  112 (219)
T 1vlm_A          107 LMVTTI  112 (219)
T ss_dssp             EEESCG
T ss_pred             EEcchH
Confidence            987554

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.38  E-value=2.4e-06  Score=83.30  Aligned_cols=87  Identities=25%  Similarity=0.354  Sum_probs=68.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~  204 (371)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+ ++   
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~---  265 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TI---  265 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CC---
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CC---
Confidence            456667777777899999999999999999987  569999999 99999999988653   479999999973 21   


Q ss_pred             hhhHHHhhccCCCeeEEEecCC-CcccH
Q 017450          205 MLSLFERRKSSSGFAKVVANIP-FNIST  231 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlP-y~iss  231 (371)
                                +..+|+|+++-. .++..
T Consensus       266 ----------p~~~D~v~~~~vlh~~~d  283 (369)
T 3gwz_A          266 ----------PDGADVYLIKHVLHDWDD  283 (369)
T ss_dssp             ----------CSSCSEEEEESCGGGSCH
T ss_pred             ----------CCCceEEEhhhhhccCCH
Confidence                      226888876543 34443

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.37  E-value=1.1e-07  Score=90.99  Aligned_cols=78  Identities=10%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeC----CHHHHHHHHHHhccC--CCeEEEEc-ccccchhhhhhh
Q 017450          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK----DQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSHML  206 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~----d~~~i~~a~~~~~~~--~~v~vi~g-D~~~~~~~~~~~  206 (371)
                      .+...+.++.+|||+|||+|.+|..+++. .+|+|||+    ++.+++.+.  ....  ++++++++ |+.+++      
T Consensus        75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~------  145 (305)
T 2p41_A           75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP------  145 (305)
T ss_dssp             HHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC------
T ss_pred             HHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC------
Confidence            33333457789999999999999999998 68999999    443332111  1111  47899999 887653      


Q ss_pred             hHHHhhccCCCeeEEEecCCCc
Q 017450          207 SLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                              ...+|+|++|.+.+
T Consensus       146 --------~~~fD~V~sd~~~~  159 (305)
T 2p41_A          146 --------PERCDTLLCDIGES  159 (305)
T ss_dssp             --------CCCCSEEEECCCCC
T ss_pred             --------cCCCCEEEECCccc
Confidence                    25699999997753

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.34  E-value=6.7e-07  Score=84.15  Aligned_cols=82  Identities=18%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHH----Hh--CCeE--EEEeCCHHHHHHHHHHhccC---CCeEE--EEcccccchhhhhhh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLL----NA--GATV--LAIEKDQHMVGLVRERFASI---DQLKV--LQEDFVKCHIRSHML  206 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La----~~--~~~V--~aIE~d~~~i~~a~~~~~~~---~~v~v--i~gD~~~~~~~~~~~  206 (371)
                      .++.+|||||||+|.++..++    ..  +..|  +++|.++.|++.|+++....   +++++  ..+|+.++...    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~----  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSR----  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHH----
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhh----
Confidence            456799999999998775443    32  3444  99999999999999987542   35544  45555443210    


Q ss_pred             hHHHhhccCCCeeEEEecCCC
Q 017450          207 SLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy  227 (371)
                       +... ...+.||+|+++.-.
T Consensus       127 -~~~~-~~~~~fD~V~~~~~l  145 (292)
T 2aot_A          127 -MLEK-KELQKWDFIHMIQML  145 (292)
T ss_dssp             -HHTT-TCCCCEEEEEEESCG
T ss_pred             -hccc-cCCCceeEEEEeeee
Confidence             0000 023679999987544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.34  E-value=1.7e-06  Score=82.79  Aligned_cols=83  Identities=16%  Similarity=0.355  Sum_probs=66.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~  203 (371)
                      ....+++.+...+ .+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+ ++  
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--  230 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV--  230 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC--
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC--
Confidence            4556666666666 89999999999999999987  568999999 99999999987542   479999999976 32  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                 +..+|+|+++-..
T Consensus       231 -----------~~~~D~v~~~~vl  243 (334)
T 2ip2_A          231 -----------PSNGDIYLLSRII  243 (334)
T ss_dssp             -----------CSSCSEEEEESCG
T ss_pred             -----------CCCCCEEEEchhc
Confidence                       2458998876554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.32  E-value=1.2e-06  Score=84.01  Aligned_cols=81  Identities=19%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHh
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      +...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+ ++          
T Consensus       165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----------  232 (332)
T 3i53_A          165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL----------  232 (332)
T ss_dssp             SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----------
T ss_pred             CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC----------
Confidence            33445689999999999999999986  568999999 99999999987653   479999999973 21          


Q ss_pred             hccCCCeeEEEecCC-CcccHH
Q 017450          212 RKSSSGFAKVVANIP-FNISTD  232 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP-y~iss~  232 (371)
                         +..+|+|+++-. .++..+
T Consensus       233 ---p~~~D~v~~~~vlh~~~~~  251 (332)
T 3i53_A          233 ---PAGAGGYVLSAVLHDWDDL  251 (332)
T ss_dssp             ---CCSCSEEEEESCGGGSCHH
T ss_pred             ---CCCCcEEEEehhhccCCHH
Confidence               226888886543 345443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.32  E-value=2.9e-06  Score=82.54  Aligned_cols=80  Identities=15%  Similarity=0.252  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..+.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...+   +++++.+|+.+....           .
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----------~  245 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-----------F  245 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-----------C
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-----------C
Confidence            45689999999999999999985  568999999 999999999987543   799999999875200           1


Q ss_pred             CCCeeEEEecCCC-cccH
Q 017450          215 SSGFAKVVANIPF-NIST  231 (371)
Q Consensus       215 ~~~~d~VVaNlPy-~iss  231 (371)
                      +..+|+|+++--. ++..
T Consensus       246 p~~~D~v~~~~vlh~~~~  263 (363)
T 3dp7_A          246 PTGFDAVWMSQFLDCFSE  263 (363)
T ss_dssp             CCCCSEEEEESCSTTSCH
T ss_pred             CCCcCEEEEechhhhCCH
Confidence            2468888875433 4443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.27  E-value=2.1e-06  Score=80.82  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcccH----HHHHHHHh-C-----CeEEEEeCCHHHHHHHHHHhcc-----------------------C-
Q 017450          141 EGDIVLEIGPGTGS----LTNVLLNA-G-----ATVLAIEKDQHMVGLVRERFAS-----------------------I-  186 (371)
Q Consensus       141 ~~~~VLEIG~G~G~----lt~~La~~-~-----~~V~aIE~d~~~i~~a~~~~~~-----------------------~-  186 (371)
                      ++.+|||+|||||.    ++..|++. +     .+|+|+|+|+.|++.|+++.-.                       . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35699999999998    66666665 3     4899999999999999987410                       1 


Q ss_pred             ---------CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450          187 ---------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       187 ---------~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                               .++++.++|+.+.++.           ..+.||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-----------~~~~fDlI~c  219 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-----------VPGPFDAIFC  219 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-----------CCCCEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCC-----------cCCCeeEEEE
Confidence                     2588889998874321           1257999997

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.27  E-value=1.3e-06  Score=74.41  Aligned_cols=84  Identities=13%  Similarity=0.270  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCccc-HHHHHHHH-hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTG-SLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G-~lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~  203 (371)
                      +..+++.|.+...  ++++|||||||.| ..+..|++ .|..|+++|+++..++             ++..|+.+-.+. 
T Consensus        22 ~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------~v~dDiF~P~~~-   85 (153)
T 2k4m_A           22 WNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------IVRDDITSPRME-   85 (153)
T ss_dssp             HHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------EECCCSSSCCHH-
T ss_pred             HHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------eEEccCCCCccc-
Confidence            4566677766653  5679999999999 59999998 7899999999988655             778888774432 


Q ss_pred             hhhhHHHhhccCCCeeEE-EecCCCcccHHHHH
Q 017450          204 HMLSLFERRKSSSGFAKV-VANIPFNISTDVIK  235 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~V-VaNlPy~iss~il~  235 (371)
                                ....+|.| --|+|-.+-.+++.
T Consensus        86 ----------~Y~~~DLIYsirPP~El~~~i~~  108 (153)
T 2k4m_A           86 ----------IYRGAALIYSIRPPAEIHSSLMR  108 (153)
T ss_dssp             ----------HHTTEEEEEEESCCTTTHHHHHH
T ss_pred             ----------ccCCcCEEEEcCCCHHHHHHHHH
Confidence                      11468999 45999877766654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.24  E-value=2.9e-06  Score=79.85  Aligned_cols=73  Identities=16%  Similarity=0.209  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhcC-CCCCEEEEEcCcc--cHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450          128 EINDQLAAAAAV-QEGDIVLEIGPGT--GSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (371)
Q Consensus       128 ~v~~~i~~~l~~-~~~~~VLEIG~G~--G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~  199 (371)
                      ..+.+.+..+.. .....|||||||+  |..+..+++.   +++|++||.|+.|++.+++++...+  +++++++|+.+.
T Consensus        64 ~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           64 DWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             HHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            445556665553 3447999999997  3344444442   6799999999999999999987643  799999999886


Q ss_pred             h
Q 017450          200 H  200 (371)
Q Consensus       200 ~  200 (371)
                      .
T Consensus       144 ~  144 (277)
T 3giw_A          144 A  144 (277)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.18  E-value=1.8e-06  Score=76.89  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             HHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHH
Q 017450          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       132 ~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      .++..+. ..++.+|||||||+|.++..+   +.+|+|+|+++.             +++++.+|+.++++         
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-------------~~~~~~~d~~~~~~---------  111 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSI---RNPVHCFDLASL-------------DPRVTVCDMAQVPL---------  111 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-------------STTEEESCTTSCSC---------
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-------------CceEEEeccccCCC---------
Confidence            3444443 356789999999999999877   478999999987             46688999988653         


Q ss_pred             hhccCCCeeEEEecCCCcc
Q 017450          211 RRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlPy~i  229 (371)
                         ..+.+|+|+++..++.
T Consensus       112 ---~~~~fD~v~~~~~l~~  127 (215)
T 2zfu_A          112 ---EDESVDVAVFCLSLMG  127 (215)
T ss_dssp             ---CTTCEEEEEEESCCCS
T ss_pred             ---CCCCEeEEEEehhccc
Confidence               2357999999876543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.16  E-value=4.1e-06  Score=82.77  Aligned_cols=85  Identities=14%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCc------ccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPG------TGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G------~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ...+.++..+. .++.+|||||||      +|..+..+++.   +++|+|||+++.|.       ...++++++++|+.+
T Consensus       204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~d  275 (419)
T 3sso_A          204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQND  275 (419)
T ss_dssp             HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTC
T ss_pred             HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEecccc
Confidence            45666665554 356899999999      77777777764   67999999999983       123589999999998


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      +++...+..      ..+.||+|+++.-
T Consensus       276 lpf~~~l~~------~d~sFDlVisdgs  297 (419)
T 3sso_A          276 AEFLDRIAR------RYGPFDIVIDDGS  297 (419)
T ss_dssp             HHHHHHHHH------HHCCEEEEEECSC
T ss_pred             cchhhhhhc------ccCCccEEEECCc
Confidence            765421110      1267999999854

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.08  E-value=7.4e-06  Score=77.67  Aligned_cols=61  Identities=28%  Similarity=0.345  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      ..+..+++.++.... .+++.|||++||+|.++..++..|.+++|||+++.+++.|++++..
T Consensus       219 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          219 PFPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CSCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            356788999998876 6789999999999999999999999999999999999999999864

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.02  E-value=1e-05  Score=78.82  Aligned_cols=77  Identities=5%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       131 ~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      ..++..+. ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++    .++++++.+|+.+ ++      
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~------  265 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFA-SV------  265 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CC------
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCccc-CC------
Confidence            45555554 5667899999999999999999874  57889999 999887664    2579999999976 32      


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                              +.+|+|+++...
T Consensus       266 --------~~~D~v~~~~~l  277 (372)
T 1fp1_D          266 --------PQGDAMILKAVC  277 (372)
T ss_dssp             --------CCEEEEEEESSG
T ss_pred             --------CCCCEEEEeccc
Confidence                    228998876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.02  E-value=8.1e-06  Score=78.87  Aligned_cols=69  Identities=13%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+ ++              +
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~--------------p  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----SNNLTYVGGDMFT-SI--------------P  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----BTTEEEEECCTTT-CC--------------C
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc----CCCcEEEeccccC-CC--------------C
Confidence            446789999999999999999987  568999999 999887765    2469999999976 32              2


Q ss_pred             CeeEEEecCCC
Q 017450          217 GFAKVVANIPF  227 (371)
Q Consensus       217 ~~d~VVaNlPy  227 (371)
                      .+|+|+++...
T Consensus       246 ~~D~v~~~~~l  256 (352)
T 1fp2_A          246 NADAVLLKYIL  256 (352)
T ss_dssp             CCSEEEEESCG
T ss_pred             CccEEEeehhh
Confidence            38988876543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.00  E-value=7.9e-06  Score=79.72  Aligned_cols=63  Identities=11%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       131 ~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ..++..+. ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~  257 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----FSGVEHLGGDMFD  257 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----cCCCEEEecCCCC
Confidence            33444444 556789999999999999999986  568999999 888877653    3589999999986

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.94  E-value=1.2e-05  Score=76.20  Aligned_cols=65  Identities=17%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             cCCCCCEEEEEcC------cccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEE-EEcccccchhhhhhhh
Q 017450          138 AVQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLS  207 (371)
Q Consensus       138 ~~~~~~~VLEIG~------G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~v-i~gD~~~~~~~~~~~~  207 (371)
                      .+.++++|||+||      |+|.  ..+++.   +.+|+|+|+++.        +   .++++ +++|+.+.++      
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~~------  120 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVHT------  120 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCCC------
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCCc------
Confidence            4668899999999      5576  444443   469999999998        1   36888 9999987643      


Q ss_pred             HHHhhccCCCeeEEEecCCCc
Q 017450          208 LFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~  228 (371)
                             .+.||+|++|++.+
T Consensus       121 -------~~~fD~Vvsn~~~~  134 (290)
T 2xyq_A          121 -------ANKWDLIISDMYDP  134 (290)
T ss_dssp             -------SSCEEEEEECCCCC
T ss_pred             -------cCcccEEEEcCCcc
Confidence                   25699999997543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.88  E-value=1.4e-05  Score=77.43  Aligned_cols=70  Identities=17%  Similarity=0.330  Sum_probs=55.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+ ++              +
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~--------------~  250 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-SI--------------P  250 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-CC--------------C
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-CC--------------C
Confidence            346689999999999999999987  458999999 788876654    2479999999976 32              2


Q ss_pred             CeeEEEecCCCc
Q 017450          217 GFAKVVANIPFN  228 (371)
Q Consensus       217 ~~d~VVaNlPy~  228 (371)
                      .+|+|+++..++
T Consensus       251 ~~D~v~~~~vlh  262 (358)
T 1zg3_A          251 SADAVLLKWVLH  262 (358)
T ss_dssp             CCSEEEEESCGG
T ss_pred             CceEEEEccccc
Confidence            489988876543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.88  E-value=1.8e-05  Score=82.48  Aligned_cols=70  Identities=20%  Similarity=0.310  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHH---h-CC--eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLN---A-GA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~---~-~~--~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .+..|||+|||+|.|....++   . +.  +|+|||.++ ++..+++....+   +.|++++||+.++.+          
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L----------  425 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA----------  425 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC----------
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC----------
Confidence            345899999999999444433   3 22  689999997 566666665543   389999999999864          


Q ss_pred             hccCCCeeEEEec
Q 017450          212 RKSSSGFAKVVAN  224 (371)
Q Consensus       212 ~~~~~~~d~VVaN  224 (371)
                         +++.|+||+-
T Consensus       426 ---PEKVDIIVSE  435 (637)
T 4gqb_A          426 ---PEKADIIVSE  435 (637)
T ss_dssp             ---SSCEEEEECC
T ss_pred             ---CcccCEEEEE
Confidence               3679999975

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.87  E-value=6.6e-05  Score=72.75  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccc
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~  199 (371)
                      ..++.........+|||||||+|.++..++++  +.+++..|. +.+++.++++.+..  ++++++.+|+.+-
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~  240 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD  240 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC
Confidence            44555555667789999999999999999997  457788886 88999999887643  4899999999764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.86  E-value=3.6e-05  Score=74.97  Aligned_cols=64  Identities=11%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       130 ~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ...++..+. ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~  255 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK  255 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC
Confidence            445566655 567789999999999999999986  568999999 888877653    3589999999987

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.84  E-value=2.2e-05  Score=75.77  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=57.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~  204 (371)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.++.  +++...   .++++++.+|+.+ +    
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~----  244 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-E----  244 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-C----
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-C----
Confidence            345666677778889999999999999999986  457899999 44444  333221   2479999999962 1    


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                               .+ .+|+|+++-.+
T Consensus       245 ---------~p-~~D~v~~~~vl  257 (348)
T 3lst_A          245 ---------VP-HADVHVLKRIL  257 (348)
T ss_dssp             ---------CC-CCSEEEEESCG
T ss_pred             ---------CC-CCcEEEEehhc
Confidence                     12 68988876443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.84  E-value=6.8e-05  Score=72.19  Aligned_cols=92  Identities=11%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~  203 (371)
                      |-+++.+++.+.+.+++.++|..||.|..|..+++.   ..+|+|+|+|+.+++.++ ++. .++++++++++.++.-  
T Consensus        43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~--  118 (347)
T 3tka_A           43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGE--  118 (347)
T ss_dssp             CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHH--
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHH--
Confidence            346677888889999999999999999999999986   358999999999999985 552 3589999999988742  


Q ss_pred             hhhhHHHhhccC-CCeeEEEecCCC
Q 017450          204 HMLSLFERRKSS-SGFAKVVANIPF  227 (371)
Q Consensus       204 ~~~~l~~~~~~~-~~~d~VVaNlPy  227 (371)
                          ++.. ... +.+|.|+.|+.+
T Consensus       119 ----~L~~-~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          119 ----YVAE-RDLIGKIDGILLDLGV  138 (347)
T ss_dssp             ----HHHH-TTCTTCEEEEEEECSC
T ss_pred             ----HHHh-cCCCCcccEEEECCcc
Confidence                1111 111 258999999976

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.78  E-value=0.00011  Score=69.54  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ...+++||-||-|.|..+..+++.  ..+|+.||+|+..++.+++.+..       .++++++.+|+.++--        
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~--------  152 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN--------  152 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS--------
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh--------
Confidence            346789999999999999999986  36899999999999999988742       3589999999988632        


Q ss_pred             HhhccCCCeeEEEecCC
Q 017450          210 ERRKSSSGFAKVVANIP  226 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlP  226 (371)
                         .....||+|+.+++
T Consensus       153 ---~~~~~yDvIi~D~~  166 (294)
T 3o4f_A          153 ---QTSQTFDVIISDCT  166 (294)
T ss_dssp             ---CSSCCEEEEEESCC
T ss_pred             ---hccccCCEEEEeCC
Confidence               13467999998764

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.72  E-value=2.4e-06  Score=80.41  Aligned_cols=81  Identities=11%  Similarity=0.009  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      .+..+||+-+|+|.++..++..+.+++.||.++..++.+++|+...++++++++|+.+.-..     +.   ....++|+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~-----l~---~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNA-----LL---PPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHH-----HC---SCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHH-----hc---CCCCCccE
Confidence            35679999999999999999877899999999999999999998766899999998663211     00   12346999


Q ss_pred             EEecCCCcc
Q 017450          221 VVANIPFNI  229 (371)
Q Consensus       221 VVaNlPy~i  229 (371)
                      |+.+|||..
T Consensus       163 VfiDPPYe~  171 (283)
T 2oo3_A          163 IFIDPSYER  171 (283)
T ss_dssp             EEECCCCCS
T ss_pred             EEECCCCCC
Confidence            999999985

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.71  E-value=4.3e-05  Score=80.08  Aligned_cols=78  Identities=10%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             CCEEEEEcCcccHHHHHHHH----hC-----------CeEEEEeCCHHHHHHHHHHhc-cC-CCeEEEEcccccchhhhh
Q 017450          142 GDIVLEIGPGTGSLTNVLLN----AG-----------ATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~----~~-----------~~V~aIE~d~~~i~~a~~~~~-~~-~~v~vi~gD~~~~~~~~~  204 (371)
                      +..|||||||+|.|....+.    .+           .+|+|||.++..+..++.... .. +.|++++||+.++.+...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            45899999999999643221    12           289999999987766665543 22 369999999999865210


Q ss_pred             hhhHHHhhccCCCeeEEEecCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .       ...++.|+||+-+.
T Consensus       490 ~-------~~~ekVDIIVSElm  504 (745)
T 3ua3_A          490 D-------RGFEQPDIIVSELL  504 (745)
T ss_dssp             H-------TTCCCCSEEEECCC
T ss_pred             c-------CCCCcccEEEEecc
Confidence            0       12467999998754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.71  E-value=4.9e-05  Score=74.19  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=57.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      +.+|.+|||+||++|..|..++++|.+|+|||+.+ |-..    +...++|+++++|+.+..+            ....+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~----l~~~~~V~~~~~d~~~~~~------------~~~~~  271 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQS----LMDTGQVTWLREDGFKFRP------------TRSNI  271 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHH----HHTTTCEEEECSCTTTCCC------------CSSCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChh----hccCCCeEEEeCccccccC------------CCCCc
Confidence            46899999999999999999999999999999753 2222    2334799999999988753            23579


Q ss_pred             eEEEecCCCc
Q 017450          219 AKVVANIPFN  228 (371)
Q Consensus       219 d~VVaNlPy~  228 (371)
                      |.||+++-.+
T Consensus       272 D~vvsDm~~~  281 (375)
T 4auk_A          272 SWMVCDMVEK  281 (375)
T ss_dssp             EEEEECCSSC
T ss_pred             CEEEEcCCCC
Confidence            9999987544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.69  E-value=9.7e-05  Score=68.51  Aligned_cols=61  Identities=15%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      ..+..+++.++.... .+++.|||..||+|..+....+.|.+++|+|+++..++.+++++..
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            456788899988775 6789999999999999999998999999999999999999999864

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.51  E-value=0.00015  Score=70.80  Aligned_cols=96  Identities=23%  Similarity=0.304  Sum_probs=75.4

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccC--------CCeEE
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--------DQLKV  191 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~--------~~v~v  191 (371)
                      .|.+........+..+++++|++|||..+|.|.=|..|++.+.  .|+|+|+++..+..+++++...        .++.+
T Consensus       129 d~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v  208 (359)
T 4fzv_A          129 EYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRV  208 (359)
T ss_dssp             SEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred             chhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEE
Confidence            3444334445566677899999999999999999999998754  7999999999999998887532        37889


Q ss_pred             EEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ...|+..++..           ..+.||.|+.+.|=.
T Consensus       209 ~~~D~~~~~~~-----------~~~~fD~VLlDaPCS  234 (359)
T 4fzv_A          209 TSWDGRKWGEL-----------EGDTYDRVLVDVPCT  234 (359)
T ss_dssp             ECCCGGGHHHH-----------STTCEEEEEEECCCC
T ss_pred             EeCchhhcchh-----------ccccCCEEEECCccC
Confidence            99999876431           346799999999954

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.38  E-value=0.00053  Score=65.96  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      +.+++|+.||+|.++..+...|.+ |.++|+|+..++..+.|+....     ++|+.++...+           .+.+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~-----------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKT-----------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGG-----------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhh-----------CCCCCE
Confidence            468999999999999999999875 7799999999999999986422     68988875432           245899


Q ss_pred             EEecCCCcc
Q 017450          221 VVANIPFNI  229 (371)
Q Consensus       221 VVaNlPy~i  229 (371)
                      +++++|+.-
T Consensus        75 l~~gpPCQ~   83 (327)
T 2c7p_A           75 LCAGFPCQA   83 (327)
T ss_dssp             EEEECCCTT
T ss_pred             EEECCCCCC
Confidence            999999743

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.36  E-value=0.0002  Score=61.57  Aligned_cols=67  Identities=12%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++..+|++|||||||.              +++|+++.|++.|+++...  +++++.+|+.++++..         ...+
T Consensus         8 ~g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~~~~---------~~~~   62 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLLQSA---------HKES   62 (176)
T ss_dssp             TTCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGGGGC---------CCSS
T ss_pred             cCCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCcccc---------CCCC
Confidence            3567899999999996              2499999999999998753  5999999998876410         0236


Q ss_pred             CeeEEEecCCCc
Q 017450          217 GFAKVVANIPFN  228 (371)
Q Consensus       217 ~~d~VVaNlPy~  228 (371)
                      .||.|+++..++
T Consensus        63 ~fD~V~~~~~l~   74 (176)
T 2ld4_A           63 SFDIILSGLVPG   74 (176)
T ss_dssp             CEEEEEECCSTT
T ss_pred             CEeEEEECChhh
Confidence            799999875543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.35  E-value=0.0005  Score=67.38  Aligned_cols=77  Identities=22%  Similarity=0.218  Sum_probs=61.5

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V  221 (371)
                      -+++|+.||.|.++..+.+.|.+ |.++|+|+..++..+.|+.   +..++++|+.+++..+.....    ...+.+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~---~~~~~~~DI~~~~~~~~~~~~----~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP---RSLHVQEDVSLLNAEIIKGFF----KNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT---TSEEECCCGGGCCHHHHHHHH----CSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC---CCceEecChhhcCHHHHHhhc----ccCCCeeEE
Confidence            47999999999999999999886 6699999999999998864   678899999988654321100    123578999


Q ss_pred             EecCC
Q 017450          222 VANIP  226 (371)
Q Consensus       222 VaNlP  226 (371)
                      ++.+|
T Consensus        76 ~ggpP   80 (376)
T 3g7u_A           76 IGGPP   80 (376)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            99998

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.27  E-value=0.00025  Score=65.94  Aligned_cols=79  Identities=16%  Similarity=0.033  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-------C-------CeEEEEeCCH---H-----------HHHHHHHHhcc------
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-------G-------ATVLAIEKDQ---H-----------MVGLVRERFAS------  185 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-------~-------~~V~aIE~d~---~-----------~i~~a~~~~~~------  185 (371)
                      .++.+|||||+|+|+.+..+++.       +       .+++++|.++   +           +.+.+++.+..      
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            35579999999999998886653       1       3899999987   3           33355555432      


Q ss_pred             --------C--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          186 --------I--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       186 --------~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                              .  .+++++.||+.+.-....     .  .....+|.|+-+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~-----~--~~~~~~D~iflD~  181 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLD-----D--SLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSC-----G--GGTTCEEEEEECS
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcc-----c--ccCCeEEEEEECC
Confidence                    1  267899999988421100     0  0013699999763

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.26  E-value=0.00068  Score=66.35  Aligned_cols=78  Identities=24%  Similarity=0.344  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC----------CCeEEEEcccccchhhhhhhhHH
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~----------~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ++++||=||-|.|.....+++. ..+|+.||+|+..++.+++.+...          ++++++.+|+.++--.     ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~-----~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKR-----YA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHH-----HH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHh-----hh
Confidence            5689999999999999999986 458999999999999999987431          3689999999875311     00


Q ss_pred             HhhccCCCeeEEEecCC
Q 017450          210 ERRKSSSGFAKVVANIP  226 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNlP  226 (371)
                         .....||+|+.+++
T Consensus       280 ---~~~~~yDvIIvDl~  293 (381)
T 3c6k_A          280 ---KEGREFDYVINDLT  293 (381)
T ss_dssp             ---HHTCCEEEEEEECC
T ss_pred             ---hccCceeEEEECCC
Confidence               12357999998753

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.22  E-value=0.00033  Score=67.75  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=58.9

Q ss_pred             CEEEEEcCcccHHHHHHHHhC--C-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          143 DIVLEIGPGTGSLTNVLLNAG--A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~--~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .+|+|+.||+|.++..+...|  . .|+++|+|+.+++..+.|+.   +..++.+|+.++...+.         ....+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---~~~~~~~Di~~~~~~~~---------~~~~~D   70 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEEF---------DRLSFD   70 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHHH---------HHHCCS
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---ccccccCCHHHccHhHc---------CcCCcC
Confidence            479999999999999999988  3 58999999999999999975   45578899988754321         012589


Q ss_pred             EEEecCCC
Q 017450          220 KVVANIPF  227 (371)
Q Consensus       220 ~VVaNlPy  227 (371)
                      ++++++|.
T Consensus        71 ~l~~gpPC   78 (343)
T 1g55_A           71 MILMSPPC   78 (343)
T ss_dssp             EEEECCC-
T ss_pred             EEEEcCCC
Confidence            99999994

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.00  E-value=0.0022  Score=60.36  Aligned_cols=76  Identities=17%  Similarity=0.102  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-------CCeEEEEeCCHH--------------------------HHHHHHHHhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQH--------------------------MVGLVRERFASI  186 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-------~~~V~aIE~d~~--------------------------~i~~a~~~~~~~  186 (371)
                      ..+..|||||+..|+++..|+..       +.+|+++|..+.                          .++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34669999999999999998753       568999996421                          366788888754


Q ss_pred             ----CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       187 ----~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                          ++++++.||+.+.-..          ...+++|.|+-+.
T Consensus       185 gl~~~~I~li~Gda~etL~~----------~~~~~~d~vfIDa  217 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPT----------APIDTLAVLRMDG  217 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTT----------CCCCCEEEEEECC
T ss_pred             CCCcCceEEEEeCHHHHHhh----------CCCCCEEEEEEcC
Confidence                4799999999875321          1235688888654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.94  E-value=0.0028  Score=60.02  Aligned_cols=77  Identities=18%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCe---EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGAT---VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~---V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+-+++|+-||.|.++..+.+.|.+   |.++|+|+..++..+.++.   +..++.+|+.+++..+.        ...+.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~---~~~~~~~DI~~i~~~~i--------~~~~~   83 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ---GKIMYVGDVRSVTQKHI--------QEWGP   83 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT---TCEEEECCGGGCCHHHH--------HHTCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC---CCceeCCChHHccHHHh--------cccCC
Confidence            4558999999999999999988865   4899999999998888864   45688999998865431        11246


Q ss_pred             eeEEEecCCCc
Q 017450          218 FAKVVANIPFN  228 (371)
Q Consensus       218 ~d~VVaNlPy~  228 (371)
                      +|++++.+|.+
T Consensus        84 ~Dll~ggpPCQ   94 (295)
T 2qrv_A           84 FDLVIGGSPCN   94 (295)
T ss_dssp             CSEEEECCCCG
T ss_pred             cCEEEecCCCc
Confidence            89999999864

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.89  E-value=0.0022  Score=60.99  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             EEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV  222 (371)
                      +|||+-||.|.++..+.+.|.+ |.++|+|+.+++..+.|+.    -+++.+|+.+++..+           .+..|+++
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~~-----------~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDE-----------FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGGG-----------SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHhh-----------CCcccEEE
Confidence            6999999999999999888876 5699999999999998874    367899999886542           35689999


Q ss_pred             ecCC
Q 017450          223 ANIP  226 (371)
Q Consensus       223 aNlP  226 (371)
                      +.+|
T Consensus        67 ggpP   70 (331)
T 3ubt_Y           67 GGPP   70 (331)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            9987

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.88  E-value=0.00059  Score=65.35  Aligned_cols=75  Identities=12%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~  199 (371)
                      ..+..+++.++... ..+++.|||..||+|..+.+..+.|.+.+|+|+++..++.+++++...+ ....+.+|+.++
T Consensus       236 ~kp~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i  311 (323)
T 1boo_A          236 RFPAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI  311 (323)
T ss_dssp             CCCTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            45678888988766 4678999999999999988888889999999999999999999987543 344445555544

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.68  E-value=0.0025  Score=61.28  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC--e-E-EEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGA--T-V-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~--~-V-~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .-+++|+.||.|.++..+.+.|.  + | .++|+|+..++..+.|+...    ++++|+.+++..+.         ....
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----~~~~DI~~~~~~~i---------~~~~   76 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----VQVKNLDSISIKQI---------ESLN   76 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----CBCCCTTTCCHHHH---------HHTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----cccCChhhcCHHHh---------ccCC
Confidence            34899999999999999998873  4 5 69999999999999998642    67899988865432         1125


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      +|++++.+|
T Consensus        77 ~Dil~ggpP   85 (327)
T 3qv2_A           77 CNTWFMSPP   85 (327)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEecCC
Confidence            899999998

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.60  E-value=0.0029  Score=60.86  Aligned_cols=72  Identities=14%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC--e-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGA--T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~--~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      -+++|+.||.|.++..+.+.|.  + |.++|+|+..++..+.|+.   ...++.+|+.+++..+.         ....+|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---~~~~~~~DI~~~~~~~~---------~~~~~D   71 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---ETNLLNRNIQQLTPQVI---------KKWNVD   71 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECCCGGGCCHHHH---------HHTTCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---CCceeccccccCCHHHh---------ccCCCC
Confidence            3799999999999999988874  4 7799999999999999875   44577899998865431         113589


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      ++++.+|
T Consensus        72 ~l~ggpP   78 (333)
T 4h0n_A           72 TILMSPP   78 (333)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9999987

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.33  E-value=0.0062  Score=60.17  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHH-HhC---CeEEEEeCCHHHHHHHHHHhcc-----C-CCeEEEEcccc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLL-NAG---ATVLAIEKDQHMVGLVRERFAS-----I-DQLKVLQEDFV  197 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La-~~~---~~V~aIE~d~~~i~~a~~~~~~-----~-~~v~vi~gD~~  197 (371)
                      +.+++.|+|||++.|..|..++ ..+   ++|+++|.++..++.++++++.     . +++++++.-+-
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4688999999999999999988 432   5899999999999999999876     3 57777765543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.33  E-value=0.0078  Score=57.50  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCH---HHHHHHHHHhccC
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ---HMVGLVRERFASI  186 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~---~~i~~a~~~~~~~  186 (371)
                      ...+..+++.++.... .+++.|||.-||+|..+.+....|.+.+|+|+++   ..++.+++++...
T Consensus       225 ~~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          225 TQKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             TCCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            3567889999998764 6789999999999999988888899999999999   9999999998654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.16  E-value=0.0021  Score=60.07  Aligned_cols=84  Identities=10%  Similarity=0.070  Sum_probs=51.9

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      .|.+...+.++.+|||+|||+|..+..+++. + ..|+|+|+..++....... ...+ ++..+.+|+....+       
T Consensus        65 ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv~~l-------  136 (277)
T 3evf_A           65 WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDIHRL-------  136 (277)
T ss_dssp             HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCTTTS-------
T ss_pred             HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEeccceehhc-------
Confidence            3344445567889999999999999998876 4 3688888875431110000 0011 45555665532221       


Q ss_pred             HHhhccCCCeeEEEecCCCc
Q 017450          209 FERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy~  228 (371)
                           ....+|+|+++.-.+
T Consensus       137 -----~~~~~DlVlsD~apn  151 (277)
T 3evf_A          137 -----EPVKCDTLLCDIGES  151 (277)
T ss_dssp             -----CCCCCSEEEECCCCC
T ss_pred             -----CCCCccEEEecCccC
Confidence                 346799999997555

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.12  E-value=0.0086  Score=60.48  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             CEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-------hhhHHHhhcc
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-------MLSLFERRKS  214 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-------~~~l~~~~~~  214 (371)
                      -+++|+-||.|.++..+...|.+ |.++|+|+..++..+.|+...++..++.+|+.++...+.       ....+.  ..
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~--~~  166 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR--QH  166 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH--HH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhh--hc
Confidence            48999999999999999888875 789999999999999998544566788899988763210       000000  02


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+.+|++++.+|=
T Consensus       167 ~~~~Dvl~gGpPC  179 (482)
T 3me5_A          167 IPEHDVLLAGFPC  179 (482)
T ss_dssp             SCCCSEEEEECCC
T ss_pred             CCCCCEEEecCCC
Confidence            3568999999873

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.08  E-value=0.016  Score=53.07  Aligned_cols=91  Identities=11%  Similarity=0.094  Sum_probs=60.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhccC--CCeEEEEc-ccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~g-D~~~~~~~~~  204 (371)
                      +..|.+...+.++.+|||+||++|..+.+.+.. +. +|+|+|+-..-.+.-+ .+..+  +.++++.+ |+..+.    
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~----  141 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLP----  141 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCC----
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecC----
Confidence            445555556778889999999999999988876 43 7999998644221000 01112  47899999 985542    


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                                +.++|.|++++--.-+++.++
T Consensus       142 ----------~~~~DtllcDIgeSs~~~~vE  162 (267)
T 3p8z_A          142 ----------PEKCDTLLCDIGESSPSPTVE  162 (267)
T ss_dssp             ----------CCCCSEEEECCCCCCSCHHHH
T ss_pred             ----------CccccEEEEecCCCCCChhhh
Confidence                      356999999875444444443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.06  E-value=0.0028  Score=59.32  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=51.0

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      .|.+...+.++.+|||+|||+|..+..+++. + ..|+|+|+...+...+... ...+ ++.....++....        
T Consensus        81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~~ii~~~~~~dv~~--------  151 (282)
T 3gcz_A           81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGWNLIRFKDKTDVFN--------  151 (282)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTGGGEEEECSCCGGG--------
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCCceEEeeCCcchhh--------
Confidence            3444445678889999999999999998864 4 3799999876532221110 0011 3333332221111        


Q ss_pred             HHhhccCCCeeEEEecCCCc
Q 017450          209 FERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy~  228 (371)
                          ....++|+|++++..+
T Consensus       152 ----l~~~~~DvVLSDmApn  167 (282)
T 3gcz_A          152 ----MEVIPGDTLLCDIGES  167 (282)
T ss_dssp             ----SCCCCCSEEEECCCCC
T ss_pred             ----cCCCCcCEEEecCccC
Confidence                1346799999997666

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.75  E-value=0.014  Score=55.00  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHH--HHHHHhccCCCeEEEEc-ccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVG--LVRERFASIDQLKVLQE-DFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~--~a~~~~~~~~~v~vi~g-D~~~~~~~~~  204 (371)
                      +..|.+...+.++.+|||+||++|..+.+.+.. +. +|+|+|+-..-.+  ...+.+. ...+.++.+ |+..+.    
T Consensus        83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~-w~lV~~~~~~Dv~~l~----  157 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYG-WNIVTMKSGVDVFYRP----  157 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTT-GGGEEEECSCCTTSSC----
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcC-CcceEEEeccCHhhCC----
Confidence            445555556778889999999999999988775 54 6999998654111  0000110 124677777 876553    


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                +.++|.|++++--
T Consensus       158 ----------~~~~D~ivcDige  170 (321)
T 3lkz_A          158 ----------SECCDTLLCDIGE  170 (321)
T ss_dssp             ----------CCCCSEEEECCCC
T ss_pred             ----------CCCCCEEEEECcc
Confidence                      2458999988763

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.83  E-value=0.095  Score=51.10  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc----CCCeEEEEcccccchhhhhhhhHHH-------
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS----IDQLKVLQEDFVKCHIRSHMLSLFE-------  210 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~----~~~v~vi~gD~~~~~~~~~~~~l~~-------  210 (371)
                      +.+|+|+|||+|..|..+...            +++.+++....    .+.+++...|...-++..+...+..       
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~------------ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~  120 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF------------IVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM  120 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH------------HHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--
T ss_pred             ceEEEecCCCCChhHHHHHHH------------HHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcch
Confidence            468999999999999988654            34444433321    1356666666544443211111000       


Q ss_pred             -----------------------hhccCCCeeEEEecCCCcccHH
Q 017450          211 -----------------------RRKSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       211 -----------------------~~~~~~~~d~VVaNlPy~iss~  232 (371)
                                             .+.+...+|.|++|.-.+|.++
T Consensus       121 ~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~  165 (374)
T 3b5i_A          121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQ  165 (374)
T ss_dssp             CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred             hhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeecc
Confidence                                   0012467999999999888763

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=94.19  E-value=0.024  Score=52.37  Aligned_cols=79  Identities=15%  Similarity=0.025  Sum_probs=47.4

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC-CCe---EEEEc-ccccchhhhhh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQL---KVLQE-DFVKCHIRSHM  205 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~-~~v---~vi~g-D~~~~~~~~~~  205 (371)
                      |-+.--++++.+|||+||+.|.-+.+.++.  ...|.|..+-.+. . .. -.... .++   ++.+| |+.+++     
T Consensus        65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~~~~-----  136 (269)
T 2px2_A           65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVFYKP-----  136 (269)
T ss_dssp             HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGGGSC-----
T ss_pred             HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCccCCC-----
Confidence            334434668999999999999999999886  2233443333221 0 00 00001 233   55557 998742     


Q ss_pred             hhHHHhhccCCCeeEEEecCCCc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                               ..++|+|++++.-+
T Consensus       137 ---------~~~~DvVLSDMAPn  150 (269)
T 2px2_A          137 ---------SEISDTLLCDIGES  150 (269)
T ss_dssp             ---------CCCCSEEEECCCCC
T ss_pred             ---------CCCCCEEEeCCCCC
Confidence                     34689999986435

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.82  E-value=0.31  Score=47.61  Aligned_cols=49  Identities=24%  Similarity=0.342  Sum_probs=37.7

Q ss_pred             CEEEEEcCcccHHHHHHHHh---------CCeEEEEeCCHHHHHHHHHHhccCCCeEE
Q 017450          143 DIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHMVGLVRERFASIDQLKV  191 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~---------~~~V~aIE~d~~~i~~a~~~~~~~~~v~v  191 (371)
                      -.|+|+|+|.|.++.-+++.         ..+++.||+++.+.+.-++++...+++++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W  139 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHW  139 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEE
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEE
Confidence            37999999999998877642         23799999999999877777754434544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.79  E-value=0.21  Score=40.99  Aligned_cols=73  Identities=23%  Similarity=0.285  Sum_probs=49.5

Q ss_pred             CCEEEEEcCcc-cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          142 GDIVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       142 ~~~VLEIG~G~-G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .++|+=+|+|. |. ++..|.+.|.+|+++|.|++.++.+++.     .+.++.||+.+.+.-..        ......|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~~--------a~i~~ad   73 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQL--------AHLECAK   73 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHHH--------TTGGGCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHHh--------cCcccCC
Confidence            35788999874 33 3334444588999999999998887752     67789999877542110        1124578


Q ss_pred             EEEecCCC
Q 017450          220 KVVANIPF  227 (371)
Q Consensus       220 ~VVaNlPy  227 (371)
                      .||...|-
T Consensus        74 ~vi~~~~~   81 (140)
T 3fwz_A           74 WLILTIPN   81 (140)
T ss_dssp             EEEECCSC
T ss_pred             EEEEECCC
Confidence            88877764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.76  E-value=0.4  Score=37.11  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=56.8

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhC-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          142 GDIVLEIGPGTGSLTNVLL----NAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La----~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      +.+|+=+|+  |.++..++    +.| .+|+++++++.-.+.+.     ..++.++.+|..+...-   .+.      ..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----~~~~~~~~~d~~~~~~~---~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----RMGVATKQVDAKDEAGL---AKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----TTTCEEEECCTTCHHHH---HHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----hCCCcEEEecCCCHHHH---HHH------Hc
Confidence            468999998  55544443    457 78999999988776655     13677888887664211   111      13


Q ss_pred             CeeEEEecCCCcccHHHHHHhccCC
Q 017450          217 GFAKVVANIPFNISTDVIKQLLPMG  241 (371)
Q Consensus       217 ~~d~VVaNlPy~iss~il~~Ll~~g  241 (371)
                      ..|+||.+.|+....++.......+
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~~~~g   93 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAAKAAG   93 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHHTT
T ss_pred             CCCEEEECCCchhhHHHHHHHHHhC
Confidence            5799999999887777776665544

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.60  E-value=0.34  Score=44.46  Aligned_cols=82  Identities=16%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      +|+++|=-|.+.|.   .+..|++.|++|+.+|++++.++.+.+.+... +++..+.+|+.+.+--+... ...+   ..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~---~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE---TY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence            57889999987776   56667778999999999999888777777654 37889999998754322211 1222   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        83 G~iDiLVNNA   92 (254)
T 4fn4_A           83 SRIDVLCNNA   92 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            6789999873

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.56  E-value=0.14  Score=50.15  Aligned_cols=21  Identities=19%  Similarity=0.071  Sum_probs=18.3

Q ss_pred             CCEEEEEcCcccHHHHHHHHh
Q 017450          142 GDIVLEIGPGTGSLTNVLLNA  162 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~  162 (371)
                      .-+|+|+|||+|..|..+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            468999999999999988764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=93.09  E-value=0.068  Score=50.32  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQH  174 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~  174 (371)
                      ..++.+|||+|||+|..+..+++. + ..|+|+|+...
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            457889999999999999999985 4 37999998654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=92.93  E-value=0.19  Score=55.02  Aligned_cols=81  Identities=19%  Similarity=0.096  Sum_probs=56.4

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC-e-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH----HhhccCC
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGA-T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF----ERRKSSS  216 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~-~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~----~~~~~~~  216 (371)
                      -+++|+-||.|.++..+.+.|. + |.|+|+|+..++..+.|+.   +..++.+|+.++.......++.    ..+...+
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~  617 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP---GSTVFTEDCNILLKLVMAGETTNSRGQRLPQKG  617 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT---TSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTT
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCccccccHHHHhhhccchhhhhhhhhhcccCC
Confidence            4899999999999999998886 4 7799999999999888864   5677888875542100000000    0001124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|+|++.+|
T Consensus       618 ~vDll~GGpP  627 (1002)
T 3swr_A          618 DVEMLCGGPP  627 (1002)
T ss_dssp             TCSEEEECCC
T ss_pred             CeeEEEEcCC
Confidence            6899999987

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.81  E-value=0.69  Score=41.91  Aligned_cols=82  Identities=13%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... .++.++.+|+.+..--+. ...+.+   ..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   86 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK---AY   86 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence            57899999987664   56667777999999999988877776666543 478999999987543221 111211   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        87 g~id~lv~nA   96 (264)
T 3ucx_A           87 GRVDVVINNA   96 (264)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCcEEEECC
Confidence            5689999875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.73  E-value=0.44  Score=43.02  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... +++.++.+|+.+...-....+.+.  .. +
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~-g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAAD--AH-A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHH--hh-C
Confidence            46789999987664   55666677999999999988777666666543 478899999987543222111111  12 5


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        83 ~id~lv~nA   91 (252)
T 3h7a_A           83 PLEVTIFNV   91 (252)
T ss_dssp             CEEEEEECC
T ss_pred             CceEEEECC
Confidence            789999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.70  E-value=0.52  Score=38.26  Aligned_cols=72  Identities=21%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CCEEEEEcCcc-cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          142 GDIVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       142 ~~~VLEIG~G~-G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .++|+=+|+|. |. ++..|.+.|.+|+++|.|++.++.+++.     .+.++.+|..+...-.       . ......|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~-------~-~~~~~~d   72 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYR-------S-LDLEGVS   72 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHH-------H-SCCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHH-------h-CCcccCC
Confidence            45788999864 22 3334444588999999999988877653     4678899987753211       0 1224578


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      .||...|
T Consensus        73 ~vi~~~~   79 (141)
T 3llv_A           73 AVLITGS   79 (141)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            8887777

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.57  E-value=0.54  Score=42.05  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++..+.+.+.+... +++.++.+|+.+...-....+...  ...+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTL--AEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            56789999976653   56666677999999999998887776666543 478899999987543221111111  1124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|.+|.|--
T Consensus        86 ~id~li~~Ag   95 (253)
T 3qiv_A           86 GIDYLVNNAA   95 (253)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998853

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=92.50  E-value=0.19  Score=49.45  Aligned_cols=43  Identities=19%  Similarity=-0.038  Sum_probs=37.1

Q ss_pred             CEEEEEcCcccHHHHHHHHhCC---e----EEEEeCCHHHHHHHHHHhcc
Q 017450          143 DIVLEIGPGTGSLTNVLLNAGA---T----VLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~---~----V~aIE~d~~~i~~a~~~~~~  185 (371)
                      -+|+|+-||.|.+...+.+.|.   -    |.++|+|+..+...+.++..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            4899999999999999988762   2    77999999999999888864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=92.47  E-value=0.56  Score=42.36  Aligned_cols=82  Identities=13%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .++++|=.|.+.|.   ++..|++.|++|+.++++++..+.+.+.+...+ ++.++.+|..+..--+. ...+.+   ..
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDE---KF   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence            46788888876553   456666779999999999998888777776543 78899999987542211 111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        82 g~id~lv~nA   91 (257)
T 3imf_A           82 GRIDILINNA   91 (257)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.40  E-value=0.8  Score=40.76  Aligned_cols=83  Identities=14%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.++.++...+.+.+.+... .++.++.+|+.+...-....+...  ...+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIK--AENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHcC
Confidence            46788888876553   55666667999999999998877776666544 378999999987543221111111  1235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        82 ~id~li~~A   90 (247)
T 3lyl_A           82 AIDILVNNA   90 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.21  E-value=0.39  Score=41.41  Aligned_cols=46  Identities=15%  Similarity=0.242  Sum_probs=35.6

Q ss_pred             HhcCCCCCEEEEEcC--cccHHHHHHHH-hCCeEEEEeCCHHHHHHHHH
Q 017450          136 AAAVQEGDIVLEIGP--GTGSLTNVLLN-AGATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~--G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~  181 (371)
                      ...+.++++||.+|+  |.|..+..++. .|++|++++.+++..+.+++
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            346778999999994  56776666665 48899999999988776653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.06  E-value=0.72  Score=41.62  Aligned_cols=83  Identities=22%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             CCCEEEEEcC-cc--cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhh-hHHHhhc
Q 017450          141 EGDIVLEIGP-GT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML-SLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~-G~--G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~-~l~~~~~  213 (371)
                      .+++||=.|+ |.  |. ++..|++.|++|+.++++..-.+.+.+.+...  +++.++.+|+.+...-+... .+.+   
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE---   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH---
Confidence            5778999987 54  44 56677778999999999998877777666443  37899999998754322111 1111   


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+..|++|.|--
T Consensus        98 ~~g~id~li~~Ag  110 (266)
T 3o38_A           98 KAGRLDVLVNNAG  110 (266)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCCcEEEECCC
Confidence            1246899998743

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.04  E-value=0.65  Score=41.93  Aligned_cols=82  Identities=13%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... +++.++.+|..+...-+. ...+.+   ..
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALD---QF   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            56789988887664   55666677999999999998777766666543 478899999987543221 111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        88 g~id~lv~nA   97 (256)
T 3gaf_A           88 GKITVLVNNA   97 (256)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.97  E-value=0.73  Score=42.76  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.+++++.-.+.+.+.+... .++.++.+|+.+.+--.... ...+   ..
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFR---LL  106 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---hC
Confidence            67899999987663   55666677999999999998887777666543 37899999998754321111 1111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus       107 g~id~lvnnA  116 (301)
T 3tjr_A          107 GGVDVVFSNA  116 (301)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999884

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=91.75  E-value=0.87  Score=41.70  Aligned_cols=82  Identities=12%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... .++.++.+|+.+..--. ......+   ..
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVE---RF   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            46789999977653   55666677999999999998877776666543 47899999998754221 1111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus       100 g~id~lv~nA  109 (279)
T 3sju_A          100 GPIGILVNSA  109 (279)
T ss_dssp             CSCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            5689999874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.73  E-value=0.82  Score=42.30  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..+++||=.|.+    .|. ++..|++.|++|+.++.++...+.+.+.....+++.++.+|+.+..--+...+.+.  ..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~  106 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLE--KK  106 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHH--Hh
Confidence            367899999965    443 66777788999999999977666555554444578899999987543221111111  12


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus       107 ~g~iD~lVnnAG  118 (293)
T 3grk_A          107 WGKLDFLVHAIG  118 (293)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            356899998853

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=91.69  E-value=0.97  Score=41.56  Aligned_cols=82  Identities=23%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... +++.++.+|+.+..--+ ....+.+   ..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL---KF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            57789999987654   45566677999999999998887777766543 47889999998754221 1111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus       104 g~iD~lVnnA  113 (283)
T 3v8b_A          104 GHLDIVVANA  113 (283)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.63  E-value=0.56  Score=43.05  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .|+++|=-|.+.|.   .+..|++.|++|+.+|++++..+.+.+.+... +++..+.+|..+-+--+...+...  ...+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD--AEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHCC
Confidence            57888888887775   56667778999999999998887776666544 478888899877543221111111  2346


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        86 ~iDiLVNNA   94 (255)
T 4g81_D           86 HVDILINNA   94 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            789999884

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.62  E-value=0.8  Score=41.91  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccc-hhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC-HIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~-~~~~~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+++++.-.+.+.+.+...  .++.++.+|+.+. ..-....+.+..  .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~--~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT--H   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH--H
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH--h
Confidence            56789988877553   45566667999999999988777666665543  3789999999875 322211121111  1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            256899998854

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.60  E-value=0.3  Score=51.87  Aligned_cols=54  Identities=17%  Similarity=0.187  Sum_probs=43.5

Q ss_pred             CEEEEEcCcccHHHHHHHHhC------C-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccc
Q 017450          143 DIVLEIGPGTGSLTNVLLNAG------A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~------~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~  199 (371)
                      -+|+|+-||.|.++.-+.+.|      . -+.|+|+|+.+++..+.|+.   +..+.++|+.++
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp---~~~~~~~di~~i  273 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP---QTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT---TSEEEESCHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC---CCceecCcHHHh
Confidence            489999999999999887765      2 46799999999999998864   556667776544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.55  E-value=0.67  Score=41.89  Aligned_cols=83  Identities=14%  Similarity=0.219  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-.+.+.+.+... +++.++.+|+.+.+--.... .+.+   ..
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~  104 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA---AH  104 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH---hc
Confidence            57889999976553   44555667999999999998877776666543 47889999998754321111 1111   12


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|--
T Consensus       105 g~id~lv~~Ag  115 (262)
T 3rkr_A          105 GRCDVLVNNAG  115 (262)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            56899998753

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.41  E-value=1.1  Score=40.41  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++.++.+.+.+.  +++.++.+|..+...-+...+...  ...+.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   82 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAG--QTLGA   82 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HHhCC
Confidence            57899999987654   455666779999999999988777766653  378899999987543221111111  11256


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        83 id~lv~nA   90 (255)
T 4eso_A           83 IDLLHINA   90 (255)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=91.29  E-value=1.3  Score=40.22  Aligned_cols=82  Identities=15%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++.-.+.+.+.+... .++.++.+|+.+.+.- .....+.+   ..
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~~  106 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA---EI  106 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH---HC
Confidence            56789989876443   34445556899999999988776665555433 3788999999875421 11111111   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.||.|.
T Consensus       107 g~iD~li~~A  116 (272)
T 1yb1_A          107 GDVSILVNNA  116 (272)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCcEEEECC
Confidence            4689999875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=91.14  E-value=0.97  Score=41.35  Aligned_cols=82  Identities=23%  Similarity=0.274  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++..+.+.+.+...+++.++.+|+.+..--+. ...+.+   ..+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGE---LSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHH---HCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHH---hcC
Confidence            46789999976553   45556667999999999988776666655544478888889877532111 111111   235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       105 ~iD~lvnnA  113 (276)
T 2b4q_A          105 RLDILVNNA  113 (276)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999875

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=91.10  E-value=0.94  Score=40.73  Aligned_cols=82  Identities=15%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---C-CCeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I-DQLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~-~~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+..   . .++.++.+|+.+..--+. ...+.+  
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ--   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH--
Confidence            46789999987664   5566677799999999998877766655532   1 478899999987543211 111111  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|-
T Consensus        84 -~~g~iD~lvnnA   95 (250)
T 3nyw_A           84 -KYGAVDILVNAA   95 (250)
T ss_dssp             -HHCCEEEEEECC
T ss_pred             -hcCCCCEEEECC
Confidence             125689999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.09  E-value=0.49  Score=45.87  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=40.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~  181 (371)
                      .+..+.+.++++||-+|+|. |.++..+++. |+ +|+++|.+++..+.+++
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            34566788999999999986 8888888875 87 89999999998888764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.06  E-value=0.57  Score=43.38  Aligned_cols=83  Identities=18%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|.    |.|. ++..|++.|++|+.++++++..+.+.+.....+.+.++.+|+.+...-+... .+.+   .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAE---E  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            5789999997    4453 6677777899999999997665555554444456788899988754222111 1111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus       106 ~g~iD~lVnnAG  117 (296)
T 3k31_A          106 WGSLDFVVHAVA  117 (296)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            256899998854

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.95  E-value=0.87  Score=41.27  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=58.5

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      .|+++|=-|+    |.|. .+..|++.|++|+.++++++..+.+.+.++..  +++..+.+|..+..--.. .....+  
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   82 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK--   82 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH--
Confidence            5789999984    5665 56778888999999999988877777766543  378889999876542211 111121  


Q ss_pred             ccCCCeeEEEecCCC
Q 017450          213 KSSSGFAKVVANIPF  227 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy  227 (371)
                       ..+..|++|.|.-+
T Consensus        83 -~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           83 -DVGNIDGVYHSIAF   96 (256)
T ss_dssp             -HHCCCSEEEECCCC
T ss_pred             -HhCCCCEEEecccc
Confidence             23678999988644

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=90.86  E-value=0.74  Score=42.20  Aligned_cols=82  Identities=18%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|.+.|.   ++..|++.|++|+.++++++..+.+.+.+... +++.++.+|+.+...-+ ....+.+   ..
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~---~~  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG---EL  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence            57899999987654   55666677999999999988777666665543 37889999998754221 1111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus       108 g~iD~lvnnA  117 (276)
T 3r1i_A          108 GGIDIAVCNA  117 (276)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=90.84  E-value=1.3  Score=40.52  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC----------------HHHHHHHHHHhccC-CCeEEEEcccccch
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------------QHMVGLVRERFASI-DQLKVLQEDFVKCH  200 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d----------------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~  200 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++                ++.++.+.+.+... +++.++.+|+.+..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            57899999987664   566677779999999987                55555555555433 47889999998754


Q ss_pred             hhhhhh-hHHHhhccCCCeeEEEecC
Q 017450          201 IRSHML-SLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       201 ~~~~~~-~l~~~~~~~~~~d~VVaNl  225 (371)
                      --+... ...+   ..+..|++|.|-
T Consensus        90 ~v~~~~~~~~~---~~g~id~lv~nA  112 (286)
T 3uve_A           90 ALKAAVDSGVE---QLGRLDIIVANA  112 (286)
T ss_dssp             HHHHHHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHHHHHH---HhCCCCEEEECC
Confidence            322111 1111   124689999874

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.83  E-value=0.91  Score=40.80  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+++||=.|++    .|. ++..|++.|++|+.++++....+.+++.....+++.++.+|+.+..--....+.+.  ...
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   90 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK--THW   90 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--HHC
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            67899999964    343 45666677999999999876666555554445678899999987543221111111  123


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|--
T Consensus        91 g~id~lv~nAg  101 (271)
T 3ek2_A           91 DSLDGLVHSIG  101 (271)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899998743

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=90.77  E-value=1.3  Score=40.99  Aligned_cols=80  Identities=11%  Similarity=0.148  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~~  216 (371)
                      +|+.+|=-|.+.|.   .+..|++.|++|+.++++++.++.+.+.+.  ++...+.+|..+..--+.. ....+   ..+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVKA---EAG  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            68899999987775   566677789999999999988877766653  3677889998875432221 12222   236


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       103 ~iDiLVNNA  111 (273)
T 4fgs_A          103 RIDVLFVNA  111 (273)
T ss_dssp             CEEEEEECC
T ss_pred             CCCEEEECC
Confidence            789999884

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=90.73  E-value=1.2  Score=40.67  Aligned_cols=82  Identities=15%  Similarity=0.219  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      .+++||=.|.+.|.   ++..|++.|++|+.++++++-.+.+.+.+...+    ++.++.+|+.+...-.. .....+  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA--   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH--
Confidence            56789999986553   556666779999999999988777666665432    68888999887542211 111111  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|-
T Consensus        88 -~~g~id~lv~nA   99 (281)
T 3svt_A           88 -WHGRLHGVVHCA   99 (281)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -HcCCCCEEEECC
Confidence             125689999874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=90.68  E-value=0.9  Score=41.45  Aligned_cols=82  Identities=16%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... +++.++.+|+.+..--.. ...+.+   ..
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVD---TW   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence            45788888887654   45666677999999999998877776666543 378888899887542211 111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        80 g~iD~lVnnA   89 (264)
T 3tfo_A           80 GRIDVLVNNA   89 (264)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.65  E-value=1.1  Score=40.60  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|.+.|.   ++..|++.|++|+.++++++-.+.+.+.+...  +++.++.+|+.+..--+. .....+   .
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE---E   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            56789888876553   45566667999999999998877776666543  378899999987542211 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        86 ~g~id~lvnnA   96 (262)
T 3pk0_A           86 FGGIDVVCANA   96 (262)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCCEEEECC
Confidence            24689999874

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.63  E-value=1.3  Score=39.56  Aligned_cols=82  Identities=20%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... .++.++.+|+.+...-+ ......+   ..
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~---~~   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVE---AL   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            46789999976553   45556667999999999988776665555433 37888999988754221 1111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        83 g~id~lv~nA   92 (247)
T 2jah_A           83 GGLDILVNNA   92 (247)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=90.56  E-value=1.2  Score=39.40  Aligned_cols=82  Identities=15%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++...+.+.+.+...+++.++.+|+.+...- .....+.+   ..+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK---AFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHH---HhC
Confidence            46788888875443   344555668999999999887766655554335789999998875321 11111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        82 ~id~li~~A   90 (251)
T 1zk4_A           82 PVSTLVNNA   90 (251)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=90.55  E-value=0.65  Score=42.73  Aligned_cols=82  Identities=16%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhh-HHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS-LFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~-l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... +++.++.+|+.+...-....+ +.+   ..
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   83 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVR---RF   83 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            56789988887654   55666777999999999998877777666543 478888999887543221111 111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        84 g~iD~lvnnA   93 (280)
T 3tox_A           84 GGLDTAFNNA   93 (280)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=90.55  E-value=1.4  Score=39.35  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++...+.+.+.+... .++.++.+|+.+...- .....+.+   ..
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   88 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHE---QE   88 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH---Hc
Confidence            46789988876443   44455566899999999987666555554432 3789999999875421 11111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.+|.|.
T Consensus        89 ~~id~vi~~A   98 (260)
T 3awd_A           89 GRVDILVACA   98 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4679998774

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=90.51  E-value=1.8  Score=38.91  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  +++.++.+|+.+.+.-+ ......+   ..+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   81 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATVE---HAG   81 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH---HSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHHH---HcC
Confidence            56789999976553   455666779999999999887776666553  37889999998754221 1111211   235


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|--
T Consensus        82 ~id~lv~~Ag   91 (259)
T 4e6p_A           82 GLDILVNNAA   91 (259)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998843

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=90.48  E-value=1.7  Score=39.63  Aligned_cols=82  Identities=12%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++++++-.+.+.+.+... .++.++.+|+.+..--+ ....+.+   ..
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE---RY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH---Hh
Confidence            46789999976553   44555667999999999987766655555432 37888999988754211 1111111   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        98 g~iD~lv~~A  107 (277)
T 2rhc_B           98 GPVDVLVNNA  107 (277)
T ss_dssp             CSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=90.47  E-value=0.73  Score=42.13  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... +++.++.+|+.+...-....+.+.  ...+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLD--EQGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHCC
Confidence            57889988876553   55566677999999999988877766666543 478889999887543221111111  1235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       103 ~iD~lv~nA  111 (271)
T 4ibo_A          103 DVDILVNNA  111 (271)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.47  E-value=1.3  Score=41.41  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-C--CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D--QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~--~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++.-.+.+.+.+... +  ++.++.+|+.+..--+...+.+.  ..
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE--AR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            56789999987654   55566667999999999988777666655432 2  78899999987542211111111  12


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        85 ~g~id~lv~nA   95 (319)
T 3ioy_A           85 FGPVSILCNNA   95 (319)
T ss_dssp             TCCEEEEEECC
T ss_pred             CCCCCEEEECC
Confidence            35689999874

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=90.46  E-value=1.5  Score=39.52  Aligned_cols=82  Identities=11%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... .++.++.+|+.+..--. ....+.+   ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR---DF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---Hh
Confidence            46789988886553   45556667999999999988776666555443 37888999987753211 1111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        83 g~id~lv~nA   92 (262)
T 1zem_A           83 GKIDFLFNNA   92 (262)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999875

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=90.39  E-value=1.6  Score=39.33  Aligned_cols=82  Identities=13%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++.++...+.+.+.+...+++.++.+|+.+..--.. ...+.+   ..+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIA---KHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHH---HcC
Confidence            46789988875443   34455566899999999987766555555433478999999987542111 111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|.+|.|.
T Consensus        92 ~id~li~~A  100 (278)
T 2bgk_A           92 KLDIMFGNV  100 (278)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999774

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=90.29  E-value=1.3  Score=42.21  Aligned_cols=48  Identities=19%  Similarity=0.245  Sum_probs=39.3

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ....++++++||=+|+|. |.++..+++. |++|++++.+++-.+.+++.
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc
Confidence            456678899999999875 7777777775 88999999999988888764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=90.25  E-value=1.8  Score=39.23  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC-
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS-  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~-  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... .++.++.+|+.+.+.-+...+...  ... 
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVA--HVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789999976553   45555667999999999987766655554432 378889999877542211111111  112 


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        98 g~id~lv~nA  107 (273)
T 1ae1_A           98 GKLNILVNNA  107 (273)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            5689999874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=90.16  E-value=1.6  Score=39.12  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.++.++...+.+.+.+.  .++.++.+|+.+...-+. ...+.+   ..+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g   82 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG--DAALAVAADISKEADVDAAVEAALS---KFG   82 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH---hcC
Confidence            46789999987653   566677779999999999988777766553  378899999987543211 111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        83 ~id~li~~A   91 (261)
T 3n74_A           83 KVDILVNNA   91 (261)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.16  E-value=1.5  Score=39.92  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC------------HHHHHHHHHHhccC-CCeEEEEcccccchhhh-
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-  203 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d------------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-  203 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++            .+-.+.+...+... .++.++.+|+.+..--. 
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            57899999987654   556667779999999987            55555555544433 47899999998754221 


Q ss_pred             hhhhHHHhhccCCCeeEEEecC
Q 017450          204 HMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      ....+.+   ..+..|++|.|-
T Consensus        89 ~~~~~~~---~~g~id~lv~nA  107 (287)
T 3pxx_A           89 ELANAVA---EFGKLDVVVANA  107 (287)
T ss_dssp             HHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHH---HcCCCCEEEECC
Confidence            1111111   124689999874

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.16  E-value=1.6  Score=39.70  Aligned_cols=83  Identities=16%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-------------CHHHHHHHHHHhccC-CCeEEEEcccccchhh
Q 017450          140 QEGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFASI-DQLKVLQEDFVKCHIR  202 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-------------d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~  202 (371)
                      ..+++||=.|.+.|.   ++..|++.|++|+.+++             +++-.+.+.+.+... .++.++.+|+.+..--
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            367899999987664   56666777999999998             666666666555543 3788899998875422


Q ss_pred             h-hhhhHHHhhccCCCeeEEEecC
Q 017450          203 S-HMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       203 ~-~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      + ......+   ..+..|++|.|-
T Consensus        93 ~~~~~~~~~---~~g~id~lvnnA  113 (280)
T 3pgx_A           93 RELVADGME---QFGRLDVVVANA  113 (280)
T ss_dssp             HHHHHHHHH---HHCCCCEEEECC
T ss_pred             HHHHHHHHH---HcCCCCEEEECC
Confidence            1 1111111   125689999884

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=90.11  E-value=1.2  Score=40.31  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+..  ..++.++.+|+.+...-+... .+.+   .
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE---A   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---H
Confidence            56789988887654   5566667799999999998877766655533  247899999998764322111 1111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        96 ~g~id~lv~nA  106 (266)
T 4egf_A           96 FGGLDVLVNNA  106 (266)
T ss_dssp             HTSCSEEEEEC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=90.10  E-value=1.6  Score=39.53  Aligned_cols=84  Identities=17%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CC--CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.. .+  ++.++.+|+.+...-....+.+.  ..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE--RT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            56789999987664   5566677799999999998877766665543 22  58889999987543221111111  11


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus        85 ~g~id~lvnnAg   96 (265)
T 3lf2_A           85 LGCASILVNNAG   96 (265)
T ss_dssp             HCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            256899998853

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.07  E-value=0.55  Score=44.36  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=40.2

Q ss_pred             HHHhcCCCCCEEEEEcCc--ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G--~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ...+.++++++||-+|+|  .|.++..+++. |++|++++.+++-.+.+++.
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC
Confidence            355677899999999986  67788777774 88999999998888888764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=90.05  E-value=1.5  Score=40.60  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC------------HHHHHHHHHHhccC-CCeEEEEcccccchhhhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d------------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~  204 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++            ++.++.+.+.+... +++.++.+|+.+..--+.
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            57899999987664   556677779999999987            55555554444433 478999999987543211


Q ss_pred             -hhhHHHhhccCCCeeEEEecC
Q 017450          205 -MLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       205 -~~~l~~~~~~~~~~d~VVaNl  225 (371)
                       ...+.+   ..+..|++|.|-
T Consensus       107 ~~~~~~~---~~g~iD~lv~nA  125 (299)
T 3t7c_A          107 AVDDGVT---QLGRLDIVLANA  125 (299)
T ss_dssp             HHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHH---HhCCCCEEEECC
Confidence             111111   125689999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=90.00  E-value=1.2  Score=40.32  Aligned_cols=82  Identities=17%  Similarity=0.245  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.++. ++...+.+.+.+... .++.++.+|+.+..--.... .+.+   .
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~  104 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQ---S  104 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH---h
Confidence            57789989987664   55666677999999998 666666666555443 37899999988754221111 1111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|.+|.|-
T Consensus       105 ~g~id~li~nA  115 (271)
T 4iin_A          105 DGGLSYLVNNA  115 (271)
T ss_dssp             HSSCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=89.99  E-value=1.5  Score=40.01  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++...+.+.+.....+++.++.+|..+...-....+..+   ..+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~---~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA---ATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH---HHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH---hcCC
Confidence            57899999987663   56666777999999997766555444433333478899999987543222222222   1256


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus       107 iD~lv~nA  114 (273)
T 3uf0_A          107 VDVLVNNA  114 (273)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            89999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.94  E-value=1.8  Score=38.80  Aligned_cols=82  Identities=20%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+... .++.++.+|..+..--. ......+   ..
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN---HF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH---HT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence            46789988876543   45555667999999999988766655554432 36888899987753211 1111111   12


Q ss_pred             -CCeeEEEecC
Q 017450          216 -SGFAKVVANI  225 (371)
Q Consensus       216 -~~~d~VVaNl  225 (371)
                       +..|++|.|-
T Consensus        85 ~g~id~lv~~A   95 (260)
T 2ae2_A           85 HGKLNILVNNA   95 (260)
T ss_dssp             TTCCCEEEECC
T ss_pred             CCCCCEEEECC
Confidence             5689999874

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=89.88  E-value=1.6  Score=38.70  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~~~  217 (371)
                      +++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+..  ++.++.+|+.+..--+... ...+   ..+.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~---~~g~   77 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN--AVIGIVADLAHHEDVDVAFAAAVE---WGGL   77 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GEEEEECCTTSHHHHHHHHHHHHH---HHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH---hcCC
Confidence            5678888876554   5566667799999999999887777666643  6889999988754221111 1111   1256


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      .|++|.|--
T Consensus        78 id~lvnnAg   86 (235)
T 3l6e_A           78 PELVLHCAG   86 (235)
T ss_dssp             CSEEEEECC
T ss_pred             CcEEEECCC
Confidence            899998753

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.84  E-value=1.8  Score=39.62  Aligned_cols=83  Identities=13%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++..+.+.+.+... +++.++.+|+.+...-.... .+.+   .
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  104 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA---E  104 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH---H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---H
Confidence            57789999987664   55666777999999995 776666555555433 47899999998764322111 1111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus       105 ~g~iD~lvnnAg  116 (280)
T 4da9_A          105 FGRIDCLVNNAG  116 (280)
T ss_dssp             HSCCCEEEEECC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=89.83  E-value=1.8  Score=39.34  Aligned_cols=79  Identities=11%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  .++.++.+|+.+..--..   +++.....+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~---~~~~~~~~~~  103 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG--NRAEFVSTNVTSEDSVLA---AIEAANQLGR  103 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHH---HHHHHTTSSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEcCCCCHHHHHH---HHHHHHHhCC
Confidence            56789999987663   556666779999999999988777766653  478999999987543221   2221112356


Q ss_pred             eeEEEec
Q 017450          218 FAKVVAN  224 (371)
Q Consensus       218 ~d~VVaN  224 (371)
                      .|.+|.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            7888877

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=89.74  E-value=1.3  Score=40.14  Aligned_cols=82  Identities=17%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC------------HHHHHHHHHHhcc-CCCeEEEEcccccchhhhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d------------~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~  204 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++            ++..+.+.+.+.. .+++.++.+|+.+..--+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            57899999986553   566667779999999987            5555544444332 2478999999987542211


Q ss_pred             -hhhHHHhhccCCCeeEEEecC
Q 017450          205 -MLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       205 -~~~l~~~~~~~~~~d~VVaNl  225 (371)
                       .....+   ..+..|++|.|-
T Consensus        92 ~~~~~~~---~~g~id~lv~nA  110 (278)
T 3sx2_A           92 ALQAGLD---ELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHHH---HHCCCCEEEECC
T ss_pred             HHHHHHH---HcCCCCEEEECC
Confidence             111111   125689999884

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=89.69  E-value=2.7  Score=39.86  Aligned_cols=49  Identities=31%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             HHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCe-EEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GAT-VLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~-V~aIE~d~~~i~~a~~~  182 (371)
                      +..+.+.+|++||=+|+|. |.++..+++. |++ |++++.+++-.+.+++.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            4567788999999999875 7777778775 776 99999999999999876

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=89.68  E-value=1.7  Score=39.20  Aligned_cols=82  Identities=13%  Similarity=0.091  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR-SHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~-~~~~~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+..   ..++.++.+|..+...- .......+   
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE---   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH---
Confidence            46789999976553   4556666799999999998776655544432   24788899998875421 11111111   


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+..|++|.|-
T Consensus        89 ~~g~id~lv~nA  100 (267)
T 1iy8_A           89 RFGRIDGFFNNA  100 (267)
T ss_dssp             HHSCCSEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            124689999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=89.67  E-value=0.95  Score=41.44  Aligned_cols=82  Identities=20%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... +++.++.+|..+...-....+...   ..+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~---~~g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAE---AIA  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHH---HhC
Confidence            57889988876554   45666677999999999987666665555433 478999999987543222222111   125


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       109 ~iD~lvnnA  117 (275)
T 4imr_A          109 PVDILVINA  117 (275)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.66  E-value=1.7  Score=41.12  Aligned_cols=51  Identities=29%  Similarity=0.387  Sum_probs=41.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+..+.+.++++||=+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.
T Consensus       157 ~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          157 HGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            344677888999999999875 7788888875 77 899999999988888765

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.55  E-value=0.93  Score=42.70  Aligned_cols=50  Identities=24%  Similarity=0.295  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .+....+.++++||-+|+|. |.++..+++. |++|++++.+++-.+.+++.
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            34556778999999999975 8888888875 88999999999988888764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=89.55  E-value=0.63  Score=52.29  Aligned_cols=82  Identities=18%  Similarity=0.108  Sum_probs=56.2

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC-e-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH----HhhccC
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGA-T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF----ERRKSS  215 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~-~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~----~~~~~~  215 (371)
                      .-+++|+-||.|.++..+...|. + |.++|+|+.+++..+.|+.   +..++.+|+.++.-.....+..    ..+...
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~  927 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP---GTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQK  927 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT---TSEEECSCHHHHHHHHTTTCSBCSSCCBCCCT
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCcEeeccHHHHhHhhhccchhhhhhhhcccc
Confidence            45899999999999999998886 4 7799999999999888864   5667777776442100000000    000112


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|+|++.+|
T Consensus       928 ~~vDvl~GGpP  938 (1330)
T 3av4_A          928 GDVEMLCGGPP  938 (1330)
T ss_dssp             TTCSEEEECCC
T ss_pred             CccceEEecCC
Confidence            35799999987

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=89.52  E-value=0.73  Score=44.04  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+.+.++++||-+|+|. |.++..+++. |+ +|+++|.+++..+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            456778899999999986 7788888875 77 699999999998888754

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=89.50  E-value=1.4  Score=40.31  Aligned_cols=85  Identities=19%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          140 QEGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       140 ~~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..+++||=.|.+    .|. ++..|++.|++|+.++.++ ..+.+++.....+++.++.+|+.+..--....+.+.  ..
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~  100 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELG--KV  100 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHH--HH
Confidence            357899999933    555 6777778899999999987 222222222333578899999987543221111111  12


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|++|.|.-+
T Consensus       101 ~g~id~li~nAg~  113 (280)
T 3nrc_A          101 WDGLDAIVHSIAF  113 (280)
T ss_dssp             CSSCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            3568999988543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.42  E-value=1.1  Score=40.98  Aligned_cols=82  Identities=12%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-.+.+.+.+... .++..+.+|+.+...-+. .....+   ..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK---EF  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH---Hc
Confidence            56788888876553   55666677999999999988777666655433 378888999887542211 111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus       104 g~iD~lvnnA  113 (270)
T 3ftp_A          104 GALNVLVNNA  113 (270)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.40  E-value=1.5  Score=40.10  Aligned_cols=80  Identities=19%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+.  .++.++.+|+.+...-.. .....+   ..+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g  102 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG--CGAAACRVDVSDEQQIIAMVDACVA---AFG  102 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--SSCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC--CcceEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            57789988887664   566677779999999999887776666552  478899999987542211 111111   125


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       103 ~iD~lvnnA  111 (277)
T 3gvc_A          103 GVDKLVANA  111 (277)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=89.37  E-value=1.4  Score=39.51  Aligned_cols=80  Identities=16%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+.  .++.++.+|+.+...-+... .+.+   ..+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   79 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG--KKARAIAADISDPGSVKALFAEIQA---LTG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEECCCCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHH---HCC
Confidence            57889999987654   556667779999999999887776665552  47888899988754221111 1111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        80 ~id~lv~nA   88 (247)
T 3rwb_A           80 GIDILVNNA   88 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=89.36  E-value=1.6  Score=39.07  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++...+.+.+.+..  +...+.+|..+.+--+... .+.+   ..+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~---~~g   82 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD--NGKGMALNVTNPESIEAVLKAITD---EFG   82 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG--GEEEEECCTTCHHHHHHHHHHHHH---HHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--cceEEEEeCCCHHHHHHHHHHHHH---HcC
Confidence            57789988887653   5566677799999999999887776666543  5778889988754221111 1111   125


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        83 ~iD~lv~nA   91 (248)
T 3op4_A           83 GVDILVNNA   91 (248)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.34  E-value=1.5  Score=39.94  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-C---CeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~---~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+... .   ++.++.+|+.+...-+. .....+  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK--   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH--
Confidence            46788888876553   45556667999999999988776665555432 2   68899999987542211 111111  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|-
T Consensus        83 -~~g~iD~lv~nA   94 (280)
T 1xkq_A           83 -QFGKIDVLVNNA   94 (280)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -hcCCCCEEEECC
Confidence             124689999874

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=89.31  E-value=2.4  Score=37.92  Aligned_cols=81  Identities=16%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      +++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... +++.++.+|..+...- .......+   ..+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARK---TLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---HTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---HhC
Confidence            3578888876542   45556667999999999987766555554432 3788899998875321 11111111   235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~id~lv~nA   87 (256)
T 1geg_A           79 GFDVIVNNA   87 (256)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999875

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=89.29  E-value=1.1  Score=41.61  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|.+.|.   ++..|++.|++|+.++++++-.+.+.+.+...  +++.++.+|+.+...-.. ...+.+   .
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD---A  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH---H
Confidence            56789988876553   55666777999999999988777766666544  378899999987542211 111211   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       117 ~g~iD~lvnnA  127 (293)
T 3rih_A          117 FGALDVVCANA  127 (293)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=89.10  E-value=2  Score=39.05  Aligned_cols=82  Identities=13%  Similarity=0.141  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-------------CHHHHHHHHHHhccC-CCeEEEEcccccchhhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-------------d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~  203 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.+++             +.+-.+.+.+..... .++.++.+|..+..--.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            57889999987664   55666777999999998             566555555444433 47889999988754221


Q ss_pred             h-hhhHHHhhccCCCeeEEEecC
Q 017450          204 H-MLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       204 ~-~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      . ...+.+   ..+..|++|.|-
T Consensus        90 ~~~~~~~~---~~g~id~lvnnA  109 (277)
T 3tsc_A           90 KVVDDGVA---ALGRLDIIVANA  109 (277)
T ss_dssp             HHHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHHH---HcCCCCEEEECC
Confidence            1 111111   125689999874

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=89.07  E-value=1.9  Score=39.40  Aligned_cols=80  Identities=14%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++.++.+.+...  +++.++.+|+.+..--. ......+   ..+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   78 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG--GNAVGVVGDVRSLQDQKRAAERCLA---AFG   78 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB--TTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC--CcEEEEEcCCCCHHHHHHHHHHHHH---hcC
Confidence            46789999987663   556667779999999999887776655542  47889999998754221 1111111   125


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~iD~lvnnA   87 (281)
T 3zv4_A           79 KIDTLIPNA   87 (281)
T ss_dssp             CCCEEECCC
T ss_pred             CCCEEEECC
Confidence            689999874

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=88.95  E-value=1.9  Score=38.92  Aligned_cols=82  Identities=9%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEE-eCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aI-E~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+ +.+++..+.+.+.+... +++.++.+|+.+..--+. ...+.+   .
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD---K   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            57899999987664   556666779999988 67776666665555443 478899999987543221 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        84 ~g~id~lv~nA   94 (259)
T 3edm_A           84 FGEIHGLVHVA   94 (259)
T ss_dssp             HCSEEEEEECC
T ss_pred             hCCCCEEEECC
Confidence            25689999774

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=88.87  E-value=2.2  Score=38.30  Aligned_cols=82  Identities=13%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+..  ..++.++.+|..+..--. ....+.+   .
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS---S   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            46789988876553   4555666799999999998766655544432  247888999988754211 1111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        83 ~g~id~lv~~A   93 (263)
T 3ai3_A           83 FGGADILVNNA   93 (263)
T ss_dssp             HSSCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=88.83  E-value=1.8  Score=38.78  Aligned_cols=82  Identities=17%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... .++.++.+|..+..--. ......+   ..
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVN---LH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence            46788888876543   44555667999999999987666555544432 37888899987653211 1111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        90 g~iD~lv~~A   99 (260)
T 2zat_A           90 GGVDILVSNA   99 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=88.83  E-value=2.1  Score=38.88  Aligned_cols=82  Identities=15%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC------------HHHHHHHHHHhccC-CCeEEEEcccccchhhhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d------------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~  204 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++            .+..+.+.+.+... +++.++.+|+.+..--+.
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            57899999987664   556666779999999996            44444444444333 478899999987542211


Q ss_pred             -hhhHHHhhccCCCeeEEEecC
Q 017450          205 -MLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       205 -~~~l~~~~~~~~~~d~VVaNl  225 (371)
                       .....+   ..+..|++|.|-
T Consensus        89 ~~~~~~~---~~g~id~lv~nA  107 (281)
T 3s55_A           89 FVAEAED---TLGGIDIAITNA  107 (281)
T ss_dssp             HHHHHHH---HHTCCCEEEECC
T ss_pred             HHHHHHH---hcCCCCEEEECC
Confidence             111111   124689999874

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.79  E-value=2.2  Score=37.79  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ++++||=.|++.|.   ++..|++.|.+|+.++.+++..+.+.+.+.  .++.++.+|..+...-   ..+++   ..+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~---~~~~~---~~~~   84 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEEC---SNLIS---KTSN   84 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHH---HHHHH---TCSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHHH---HHHHH---hcCC
Confidence            67899999887653   455666679999999999988777766654  3788888998764321   12222   2346


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      .|++|.|.-
T Consensus        85 id~li~~Ag   93 (249)
T 3f9i_A           85 LDILVCNAG   93 (249)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998754

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.76  E-value=1.2  Score=42.37  Aligned_cols=48  Identities=27%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+.+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  215 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI  215 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            556788999999999875 7788888875 77 899999999988888753

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=88.69  E-value=2.2  Score=38.94  Aligned_cols=80  Identities=14%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+...  +++.++.+|+.+...-+.. ....+   ..+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g  100 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG--SKAFGVRVDVSSAKDAESMVEKTTA---KWG  100 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            56789999987664   556666779999999999887766655542  4788899998875422111 11111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       101 ~iD~lv~nA  109 (277)
T 4dqx_A          101 RVDVLVNNA  109 (277)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=88.48  E-value=2.1  Score=40.23  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             hcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       137 l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~  181 (371)
                      ..+.++++||-+|+  |.|..+..++.. |++|++++.+++..+.+++
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            35678999999998  678888888774 8899999999998888865

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=88.46  E-value=1.7  Score=38.44  Aligned_cols=81  Identities=16%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++ |.++..    |++.|.+|+++++++.-.+.+.+.+... +++.++.+|..+.+.-+... .+.+   .
T Consensus        10 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   85 (255)
T 1fmc_A           10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS---K   85 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH---h
Confidence            46788888864 444444    4456889999999987766555554432 47888999988653211111 1111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|.||.|.
T Consensus        86 ~~~~d~vi~~A   96 (255)
T 1fmc_A           86 LGKVDILVNNA   96 (255)
T ss_dssp             HSSCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24688998774

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=88.40  E-value=2.1  Score=38.86  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++-.+.+.+...  .++.++.+|+.+...-+...+...  ...+.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  101 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG--KDVFVFSANLSDRKSIKQLAEVAE--REMEG  101 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHHHH--HHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEeecCCHHHHHHHHHHHH--HHcCC
Confidence            57889999977653   555666779999999999887776655442  378899999987543221111111  11256


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      .|++|.|--
T Consensus       102 iD~lvnnAg  110 (266)
T 3grp_A          102 IDILVNNAG  110 (266)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998753

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=88.38  E-value=2  Score=38.69  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEE-eCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aI-E~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+ +.++...+.+.+.+... .++.++.+|+.+..--+. .....+   .
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   79 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDE---T   79 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            46788888876553   455666679998886 88888777666666544 378999999987542211 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        80 ~g~id~lv~nA   90 (258)
T 3oid_A           80 FGRLDVFVNNA   90 (258)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=88.34  E-value=2.4  Score=38.86  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhh-hhhhHHH
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRS-HMLSLFE  210 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~-~~~~l~~  210 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++...+.+.+.+..      ..++.++.+|+.+...-. ....+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            46789999875442   3444555689999999998776665555432      247899999988753211 1111111


Q ss_pred             hhccCCCeeEEEecC
Q 017450          211 RRKSSSGFAKVVANI  225 (371)
Q Consensus       211 ~~~~~~~~d~VVaNl  225 (371)
                         ..+..|+||.|.
T Consensus        97 ---~~g~id~li~~A  108 (303)
T 1yxm_A           97 ---TFGKINFLVNNG  108 (303)
T ss_dssp             ---HHSCCCEEEECC
T ss_pred             ---HcCCCCEEEECC
Confidence               124689999874

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=88.32  E-value=2.9  Score=38.13  Aligned_cols=83  Identities=19%  Similarity=0.298  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++.++.-.+.+.+.+..  ..++.++.+|+.+...-. ......+   .
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK---V  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH---H
Confidence            46789989876443   4455566789999999998766655444432  247899999998754211 1111111   2


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|.-
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            356799998753

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=88.30  E-value=1.4  Score=40.25  Aligned_cols=81  Identities=14%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++++++-.+.+.+.+...  .++.++.+|+.+...-+... .+.+   .
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~---~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK---L  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHH---H
Confidence            46789988875442   34455567899999999988776655544322  26888999988753211111 1111   1


Q ss_pred             CCCeeEEEec
Q 017450          215 SSGFAKVVAN  224 (371)
Q Consensus       215 ~~~~d~VVaN  224 (371)
                      .+..|++|.|
T Consensus       104 ~g~iD~li~n  113 (286)
T 1xu9_A          104 MGGLDMLILN  113 (286)
T ss_dssp             HTSCSEEEEC
T ss_pred             cCCCCEEEEC
Confidence            2468999877

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=88.29  E-value=1.9  Score=39.16  Aligned_cols=82  Identities=18%  Similarity=0.146  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++. ++...+.+.+.+... +++.++.+|+.+...-+. ...+.+   .
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~---~  103 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE---R  103 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---H
Confidence            57789988876553   55666677999999988 666666655555433 478899999987543221 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       104 ~g~id~lv~nA  114 (269)
T 4dmm_A          104 WGRLDVLVNNA  114 (269)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=88.26  E-value=1.9  Score=38.60  Aligned_cols=84  Identities=19%  Similarity=0.257  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhh-cc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-KS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~-~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+...  .++.++.+|....+..+ ...+.+.. ..
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSEN-CQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHH-HHHHHHHHHHh
Confidence            57789999986653   45566677999999999988777666555322  26788999983322221 11111110 12


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        90 ~g~id~lv~nA  100 (252)
T 3f1l_A           90 YPRLDGVLHNA  100 (252)
T ss_dssp             CSCCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            35689999874

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=88.23  E-value=1.9  Score=39.42  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  +++.++.+|+.+...-+. .....+   ..+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g  101 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG--DDALCVPTDVTDPDSVRALFTATVE---KFG  101 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT--SCCEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            56788888876553   456666779999999999887776666653  478899999987542211 111111   125


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus       102 ~iD~lVnnA  110 (272)
T 4dyv_A          102 RVDVLFNNA  110 (272)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=88.14  E-value=2.6  Score=37.07  Aligned_cols=83  Identities=18%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++...+.+.+.+..  ..++.++.+|..+...-.. ...+.+   .
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYN---L   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHH---h
Confidence            46788888875443   3444555689999999998776655554432  2478889999876532111 111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.||.|.-
T Consensus        83 ~~~~d~vi~~Ag   94 (248)
T 2pnf_A           83 VDGIDILVNNAG   94 (248)
T ss_dssp             SSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=88.13  E-value=2.8  Score=37.54  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--C-CeEEEEcccccchhhhhhh-hHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHML-SLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~-~v~vi~gD~~~~~~~~~~~-~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+...  + ++.++.+|+.+..--.... ...+   
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD---   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH---
Confidence            46789988876553   44555667999999999987666555544321  3 7888999987754211111 1111   


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+ .|++|.|--
T Consensus        83 ~~g-id~lv~~Ag   94 (260)
T 2z1n_A           83 LGG-ADILVYSTG   94 (260)
T ss_dssp             TTC-CSEEEECCC
T ss_pred             hcC-CCEEEECCC
Confidence            224 899998753

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.11  E-value=2.2  Score=39.20  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHH-HHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQH-MVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~-~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++. ..+.+.+..... .++.++.+|+.+...-. ....+.+   .
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVR---Q  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---H
Confidence            57899999987654   55666677999999999865 344444444433 37889999998754221 1111211   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       123 ~g~iD~lvnnA  133 (291)
T 3ijr_A          123 LGSLNILVNNV  133 (291)
T ss_dssp             HSSCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999873

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=87.93  E-value=1.9  Score=39.30  Aligned_cols=77  Identities=19%  Similarity=0.154  Sum_probs=52.2

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~~  218 (371)
                      ++||=-|.+.|.   .+..|++.|++|+.+|++++..+.+.+   ..+++..+.+|..+..--+ ......+   ..+..
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~---~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAME---KLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHHH---HHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHHH---HcCCC
Confidence            578877887775   566777789999999999876654433   3357888999988754222 1112222   23678


Q ss_pred             eEEEecC
Q 017450          219 AKVVANI  225 (371)
Q Consensus       219 d~VVaNl  225 (371)
                      |++|.|-
T Consensus        77 DiLVNNA   83 (247)
T 3ged_A           77 DVLVNNA   83 (247)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9999874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=87.92  E-value=2  Score=40.02  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC------------HHHHHHHHHHhccC-CCeEEEEcccccchhhh-
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-  203 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d------------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-  203 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+|++            .+.++.+.+.+... .++.++.+|+.+..--+ 
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            57889999987664   566667779999999986            55454444444333 47889999998754221 


Q ss_pred             hhhhHHHhhccCCCeeEEEecC
Q 017450          204 HMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      ....+.+   ..+..|++|.|-
T Consensus       125 ~~~~~~~---~~g~iD~lVnnA  143 (317)
T 3oec_A          125 VVDEALA---EFGHIDILVSNV  143 (317)
T ss_dssp             HHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHH---HcCCCCEEEECC
Confidence            1111111   125689999874

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=87.92  E-value=2.3  Score=38.10  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=51.1

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHH--HHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM--VGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~--i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      ++++|=.|++.|.   ++..|++.|++|+.++++++.  .+.+.+.+... .++.++.+|..+..-- .......+   .
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAE---K   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            4678888876553   455566679999999998775  55554444432 3788899998875421 11111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        79 ~g~iD~lv~nA   89 (258)
T 3a28_C           79 LGGFDVLVNNA   89 (258)
T ss_dssp             HTCCCEEEECC
T ss_pred             hCCCCEEEECC
Confidence            24689999875

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=87.85  E-value=2.2  Score=37.91  Aligned_cols=82  Identities=15%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.++. +++..+.+.+.+... +++.++.+|..+...-+ ......+   .
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD---V   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            35678888866443   44555667999999998 877666555554432 37888899988754211 1111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        80 ~g~id~lv~nA   90 (246)
T 2uvd_A           80 FGQVDILVNNA   90 (246)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=87.83  E-value=2  Score=38.53  Aligned_cols=82  Identities=23%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhhHHHhhc-c-
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRK-S-  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~l~~~~~-~-  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.. .+++.++.+|+.+..--.   .+++... . 
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~---~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVR---SLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHH---HHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHH---HHHHHHHHhc
Confidence            46788888866553   4455566799999999998776655554432 236888899988754211   1111111 1 


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        81 ~g~id~lvnnA   91 (260)
T 2qq5_A           81 QGRLDVLVNNA   91 (260)
T ss_dssp             TTCCCEEEECC
T ss_pred             CCCceEEEECC
Confidence            35689999886

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=87.82  E-value=2.9  Score=38.16  Aligned_cols=83  Identities=17%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++. +++..+.+.+.+...  +++.++.+|+.+...-....+.+.  ..
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA--DR  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            46789999987654   55666677999999998 666666655555432  478889999887542211111111  12


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       102 ~g~iD~lv~nA  112 (281)
T 3v2h_A          102 FGGADILVNNA  112 (281)
T ss_dssp             TSSCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            35689999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.77  E-value=3.2  Score=34.06  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             CCEEEEEcCcccHHHHHHH----HhCCeEEEEeCC-HHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d-~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .++|+=+|+  |..+..++    +.|.+|+.+|.+ ++.++.+.+...  .++.++.||+.+...-.   .     ....
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~l~---~-----a~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLK---K-----AGID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHH---H-----HTTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHHHH---H-----cChh
Confidence            346777876  55555544    458899999998 565555554433  25889999987643211   0     1234


Q ss_pred             CeeEEEecCCC
Q 017450          217 GFAKVVANIPF  227 (371)
Q Consensus       217 ~~d~VVaNlPy  227 (371)
                      ..|.||...+.
T Consensus        71 ~ad~vi~~~~~   81 (153)
T 1id1_A           71 RCRAILALSDN   81 (153)
T ss_dssp             TCSEEEECSSC
T ss_pred             hCCEEEEecCC
Confidence            57888876654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=87.75  E-value=2.4  Score=38.07  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhc
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      .+++||=.|++    .|. ++..|++.|++|+.++.++...+.+.+.....+  ++.++.+|+.+...-+...+.+.  .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK--E   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH--H
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH--H
Confidence            56789999965    454 667777889999999998776666655554432  68999999987543221111111  1


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+..|.+|.|.-
T Consensus        84 ~~g~id~li~~Ag   96 (266)
T 3oig_A           84 QVGVIHGIAHCIA   96 (266)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCeeEEEEccc
Confidence            1246889998754

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=87.74  E-value=2.4  Score=37.22  Aligned_cols=81  Identities=14%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--cCCCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      +++||=.|++.|.   ++..|++.|.+|+.++++++-.+.+.+.+.  ...++.++.+|..+..--.. ...+.+   ..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLE---RF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHH---HH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHH---hc
Confidence            4678888876553   455666679999999999887766555443  22478899999987542111 111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        79 g~id~li~~A   88 (235)
T 3l77_A           79 GDVDVVVANA   88 (235)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=87.65  E-value=2.5  Score=38.50  Aligned_cols=82  Identities=10%  Similarity=0.114  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+.+-.+.+.+.+..  ..++.++.+|+.+..--.. ...+.+   .
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK---E  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            57899999987654   4556666799999999998766555444422  2478899999987542211 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       103 ~g~id~lv~nA  113 (277)
T 4fc7_A          103 FGRIDILINCA  113 (277)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=87.57  E-value=2.7  Score=38.14  Aligned_cols=79  Identities=19%  Similarity=0.249  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+   +++.++.+|..+..--+. .....+   ..+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g   81 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIR---RFG   81 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCeEEEcCCCCHHHHHHHHHHHHH---HcC
Confidence            46789988876553   45556667999999999987766555443   357888999877542211 111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        82 ~iD~lv~nA   90 (270)
T 1yde_A           82 RLDCVVNNA   90 (270)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.54  E-value=2  Score=39.62  Aligned_cols=82  Identities=12%  Similarity=0.203  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-C---CeEEEEcccccchhhh-hhhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFVKCHIRS-HMLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~---~v~vi~gD~~~~~~~~-~~~~l~~~~  212 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+... +   ++.++.+|+.+...-. ......+  
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA--  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH--
Confidence            46788888876553   45556667999999999988766655554432 2   6888999988754221 1111111  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|.
T Consensus       103 -~~g~iD~lvnnA  114 (297)
T 1xhl_A          103 -KFGKIDILVNNA  114 (297)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -hcCCCCEEEECC
Confidence             124689999875

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=87.48  E-value=1.3  Score=40.71  Aligned_cols=82  Identities=17%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-C-CeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~-~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++..+.+.+.+... + .+.++.+|+.+.+--+... ...+   .
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA---E  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            57889988876553   45566667999999999988777666555322 2 3588999998754221111 1111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       109 ~g~iD~lvnnA  119 (281)
T 4dry_A          109 FARLDLLVNNA  119 (281)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.38  E-value=2.6  Score=38.07  Aligned_cols=80  Identities=13%  Similarity=0.234  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  .++.++.+|+.+.+--+ ......+   ..+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   79 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALE---EFG   79 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHHH---HcC
Confidence            46789988876553   455666679999999999877666555443  47888899988754211 1111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        80 ~iD~lvnnA   88 (263)
T 2a4k_A           80 RLHGVAHFA   88 (263)
T ss_dssp             CCCEEEEGG
T ss_pred             CCcEEEECC
Confidence            679999874

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=87.37  E-value=2.7  Score=37.42  Aligned_cols=82  Identities=15%  Similarity=0.056  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHH-hCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLN-AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++ .|.+|+.++++..-.+.+.+.+... .++.++.+|+.+...-. ....+.+   .
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK---E   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH---h
Confidence            46788877755332   3445556 6889999999987666655555433 47889999988753211 1111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|+||.|-
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689998774

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=87.37  E-value=2.9  Score=38.05  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++. .++..+    ++.|.+|++++.+++-.+.+.+.+... .++.++.+|+.+...-+. ...+.+   .
T Consensus        43 ~~k~vlITGasg-gIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~---~  118 (285)
T 2c07_A           43 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT---E  118 (285)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHH---h
Confidence            467899888764 444444    445889999999887766655555443 378889999887542211 111111   2


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|.||.|.
T Consensus       119 ~~~id~li~~A  129 (285)
T 2c07_A          119 HKNVDILVNNA  129 (285)
T ss_dssp             CSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            34689999874

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=87.36  E-value=3  Score=36.83  Aligned_cols=81  Identities=14%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHh-ccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF-ASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS  215 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~-~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~  215 (371)
                      +++||=.|++.|.   ++..|++.|.+|+++++++.-.+.+.+.+ ... +++.++.+|+.+...- .....+.+   ..
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATME---QF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---Hh
Confidence            4578888865432   34455566899999999987766655554 222 3688999998875421 11111111   12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|.+|.|.
T Consensus        79 ~~id~li~~A   88 (250)
T 2cfc_A           79 GAIDVLVNNA   88 (250)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999875

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=87.19  E-value=2.7  Score=38.03  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR-SHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~-~~~~~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++.-.+.+.+.+...   +++.++.+|+.+...- .....+.+   
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS---  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH---
Confidence            46789989876443   44455566899999999987766655554432   3578889998875421 11111111   


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+..|+||.|.-
T Consensus       108 ~~g~iD~vi~~Ag  120 (279)
T 1xg5_A          108 QHSGVDICINNAG  120 (279)
T ss_dssp             HHCCCSEEEECCC
T ss_pred             hCCCCCEEEECCC
Confidence            1246899998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.10  E-value=4.5  Score=31.92  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             CCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      +.+|+=+|+|  .++..+    .+.|.+|+.+|.+++.++.+.+..    ++.++.+|..+...-      .+  .....
T Consensus         4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l------~~--~~~~~   69 (140)
T 1lss_A            4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTL------ED--AGIED   69 (140)
T ss_dssp             -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHH------HH--TTTTT
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHH------HH--cCccc
Confidence            3578888875  444444    445789999999998777665432    456778887653211      00  11245


Q ss_pred             eeEEEecCCC
Q 017450          218 FAKVVANIPF  227 (371)
Q Consensus       218 ~d~VVaNlPy  227 (371)
                      .|.|+...|.
T Consensus        70 ~d~vi~~~~~   79 (140)
T 1lss_A           70 ADMYIAVTGK   79 (140)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEEeeCC
Confidence            7888877664

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=87.10  E-value=2.8  Score=37.70  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR-SHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~-~~~~~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+...   .++.++.+|..+..-- .......+   
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD---   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH---
Confidence            46789999976543   45556667999999999987666555544321   3688899998875321 11111111   


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+..|++|.|--
T Consensus        83 ~~g~id~lv~~Ag   95 (267)
T 2gdz_A           83 HFGRLDILVNNAG   95 (267)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1246799998854

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=87.07  E-value=2.2  Score=38.92  Aligned_cols=80  Identities=10%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh-ccCCCe
Q 017450          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~~~~  218 (371)
                      +++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+....++.++.+|+.+..--.   .+++.. ...+..
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~---~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMS---AAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHH---HHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHH---HHHHHHHHHhCCC
Confidence            678888876553   5666677799999999998877766655543347888999988754211   122111 112467


Q ss_pred             eEEEecC
Q 017450          219 AKVVANI  225 (371)
Q Consensus       219 d~VVaNl  225 (371)
                      |++|.|-
T Consensus        99 D~lvnnA  105 (272)
T 2nwq_A           99 RGLINNA  105 (272)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9999875

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=87.05  E-value=2.7  Score=37.70  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+..  ++.++.+|..+..-- .......+   ..+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~d~~~v~~~~~~~~~---~~g   85 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLEN--GGFAVEVDVTKRASVDAAMQKAID---ALG   85 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTT--CCEEEECCTTCHHHHHHHHHHHHH---HHT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CCeEEEEeCCCHHHHHHHHHHHHH---HcC
Confidence            46789999876543   4455566799999999998766655444432  678888998764321 11111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        86 ~iD~lv~~A   94 (263)
T 3ak4_A           86 GFDLLCANA   94 (263)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.03  E-value=1.7  Score=41.87  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             HHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      +..+.+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l  229 (398)
T 1kol_A          178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ  229 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc
Confidence            3456788999999999875 7788888875 77 799999999998888653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.00  E-value=1.5  Score=41.90  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CCEEEEEcCc-ccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          142 GDIVLEIGPG-TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       142 ~~~VLEIG~G-~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      ..+||=+||| +|......+....+|+..|++.+-++.+++      .+..+..|+.+.+-   ..+++      ...|+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~------~~~~~~~d~~d~~~---l~~~~------~~~Dv   80 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE------FATPLKVDASNFDK---LVEVM------KEFEL   80 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT------TSEEEECCTTCHHH---HHHHH------TTCSE
T ss_pred             ccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc------cCCcEEEecCCHHH---HHHHH------hCCCE
Confidence            3589999985 343333333345689999999887776543      34566777765431   11111      35789


Q ss_pred             EEecCCCcccHHHHHHhccCC
Q 017450          221 VVANIPFNISTDVIKQLLPMG  241 (371)
Q Consensus       221 VVaNlPy~iss~il~~Ll~~g  241 (371)
                      ||+-+|++...++....++.+
T Consensus        81 Vi~~~p~~~~~~v~~~~~~~g  101 (365)
T 3abi_A           81 VIGALPGFLGFKSIKAAIKSK  101 (365)
T ss_dssp             EEECCCGGGHHHHHHHHHHHT
T ss_pred             EEEecCCcccchHHHHHHhcC
Confidence            998888877777776665544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=86.95  E-value=2.7  Score=37.14  Aligned_cols=85  Identities=15%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhh-cc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-KS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~-~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.+++++.-.+.+.+.+...  ++..++..|....+..+ ...+.+.. ..
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~-~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQ-YRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHH-HHHHHHHHHHh
Confidence            57789988886553   45566667999999999998887777666543  36778888873322221 11111110 11


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.+|.|--
T Consensus        92 ~g~id~lv~nAg  103 (247)
T 3i1j_A           92 FGRLDGLLHNAS  103 (247)
T ss_dssp             HSCCSEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            246899998753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=86.87  E-value=2.6  Score=39.76  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=39.4

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ....+.++++||=+|+  |.|.++..+++. |++|++++.+++-.+.+++.
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            4456778999999997  578888888775 88999999998888887764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.86  E-value=1.6  Score=38.18  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=46.3

Q ss_pred             EEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      +|+=+|+  |..+..++    +.|.+|+.+|.|++.++.+.+..    ++.++.||+.+...-..        ......|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~~--------a~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILRD--------AEVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHHH--------HTCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHHh--------cCcccCC
Confidence            3666775  55555554    45889999999999888765542    56789999987432110        1234567


Q ss_pred             EEEecCCCc
Q 017450          220 KVVANIPFN  228 (371)
Q Consensus       220 ~VVaNlPy~  228 (371)
                      .|+...|-.
T Consensus        68 ~vi~~~~~d   76 (218)
T 3l4b_C           68 VVVILTPRD   76 (218)
T ss_dssp             EEEECCSCH
T ss_pred             EEEEecCCc
Confidence            777766643

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=86.83  E-value=2.7  Score=38.07  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHh-cc-CCCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF-AS-IDQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~-~~-~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+ .. ..++.++.+|+.+..-- .......+   .
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE---K   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            56789999876553   45556667999999999987666554444 21 23688889998764321 11111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus        97 ~g~iD~lvnnAg  108 (267)
T 1vl8_A           97 FGKLDTVVNAAG  108 (267)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.82  E-value=1.4  Score=42.18  Aligned_cols=48  Identities=23%  Similarity=0.231  Sum_probs=39.3

Q ss_pred             HHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~  181 (371)
                      +..+.+.++++||-+|+|. |.++..+++. |++|++++.+++-.+.+++
T Consensus       187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3445778999999999984 7777777775 8899999999988888876

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=86.79  E-value=2.6  Score=38.00  Aligned_cols=82  Identities=11%  Similarity=0.068  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhcc--CCCeEEEEcccccc----hh-hhhhhhHH
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFAS--IDQLKVLQEDFVKC----HI-RSHMLSLF  209 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~--~~~v~vi~gD~~~~----~~-~~~~~~l~  209 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+++ +++-.+.+.+.+..  .+++.++.+|+.+.    .. ........
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            46788888876553   44555567999999999 87766655555432  24788999999875    32 11111111


Q ss_pred             HhhccCCCeeEEEecC
Q 017450          210 ERRKSSSGFAKVVANI  225 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNl  225 (371)
                      +   ..+..|++|.|-
T Consensus        90 ~---~~g~id~lv~nA  102 (276)
T 1mxh_A           90 R---AFGRCDVLVNNA  102 (276)
T ss_dssp             H---HHSCCCEEEECC
T ss_pred             H---hcCCCCEEEECC
Confidence            1   124689999874

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=86.76  E-value=2.6  Score=38.12  Aligned_cols=83  Identities=11%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHh---ccC-CCeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF---ASI-DQLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~---~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      .+++||=.|++.|.   ++..|++.|++|++++++++-.+.+.+.+   ... +++.++.+|+.+..--+. .....+  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG--   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH--
Confidence            46788888876543   44556667999999999988776665554   222 368889999887542111 111111  


Q ss_pred             ccCCCeeEEEecCC
Q 017450          213 KSSSGFAKVVANIP  226 (371)
Q Consensus       213 ~~~~~~d~VVaNlP  226 (371)
                       ..+..|++|.|--
T Consensus        83 -~~g~id~lv~~Ag   95 (278)
T 1spx_A           83 -KFGKLDILVNNAG   95 (278)
T ss_dssp             -HHSCCCEEEECCC
T ss_pred             -HcCCCCEEEECCC
Confidence             1246899998753

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=86.69  E-value=1.8  Score=39.62  Aligned_cols=82  Identities=10%  Similarity=0.092  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      +++++|=-|.+.|.   .+..|++.|++|+.++++++-.+.+.+..+..+++..+.+|..+..-- .......+   ..+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~---~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIA---TFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHH---HhC
Confidence            57899999988776   566777789999999988665444444333345888999998765422 11222222   236


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        83 ~iDiLVNnA   91 (258)
T 4gkb_A           83 RLDGLVNNA   91 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999873

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.60  E-value=1.9  Score=40.76  Aligned_cols=48  Identities=29%  Similarity=0.421  Sum_probs=39.3

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+.++++++||-+|+|. |.++..+++. |++|++++.+++-.+.+++.
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  211 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC  211 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh
Confidence            556788999999999874 7777777774 88899999999988888753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=86.43  E-value=3.6  Score=36.98  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++++++-.+.+.+.+..  ++.++.+|..+..--. ......+   ..+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~---~~g   80 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD--AARYVHLDVTQPAQWKAAVDTAVT---AFG   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG--GEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc--CceEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            46789988876553   4555666799999999998776665554432  5788889987643211 1111111   124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|--
T Consensus        81 ~iD~lv~~Ag   90 (260)
T 1nff_A           81 GLHVLVNNAG   90 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998743

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=86.33  E-value=2.6  Score=37.49  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++ ++.-.+.+.+.+... +++.++.+|+.+...- .....+.+   .
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK---E   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH---H
Confidence            46788888865442   44455566899999999 776665555544332 3688889998865321 11111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|.
T Consensus        83 ~g~id~li~~A   93 (261)
T 1gee_A           83 FGKLDVMINNA   93 (261)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24679999874

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=86.23  E-value=2.7  Score=37.52  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+  ..++.++.+|+.+...- .......+   ..+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   79 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQR---RLG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHH---HHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHH---HcC
Confidence            46788888876543   44555667999999999987766555544  24788899998875421 11111111   124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|--
T Consensus        80 ~id~lv~~Ag   89 (253)
T 1hxh_A           80 TLNVLVNNAG   89 (253)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6799998753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=86.22  E-value=3.9  Score=35.96  Aligned_cols=81  Identities=12%  Similarity=0.104  Sum_probs=50.5

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCC-------eEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHH
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGA-------TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLF  209 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~-------~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~  209 (371)
                      +++||=.|++.|.   ++..|++.|.       +|++++.++.-.+.+.+.+... .++.++.+|+.+...-. ....+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            4568877865432   3444555688       9999999988777666555433 36889999998753211 111111


Q ss_pred             HhhccCCCeeEEEecC
Q 017450          210 ERRKSSSGFAKVVANI  225 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNl  225 (371)
                      +   ..+..|.+|.|.
T Consensus        82 ~---~~g~id~li~~A   94 (244)
T 2bd0_A           82 E---RYGHIDCLVNNA   94 (244)
T ss_dssp             H---HTSCCSEEEECC
T ss_pred             H---hCCCCCEEEEcC
Confidence            1   124689999874

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=86.16  E-value=2.7  Score=38.62  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCC---eEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGA---TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~---~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      .+++||=.|++.|.   ++..|++.|+   +|+.++.+.+..+.+.+.+..   ..++.++.+|+.+..--+   .+++.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~---~~~~~  108 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIK---PFIEN  108 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHH---HHHHT
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHH---HHHHH
Confidence            47899999977654   4445556666   999999998887776665543   236888999998754221   12221


Q ss_pred             h-ccCCCeeEEEecC
Q 017450          212 R-KSSSGFAKVVANI  225 (371)
Q Consensus       212 ~-~~~~~~d~VVaNl  225 (371)
                      . ...+..|++|.|-
T Consensus       109 ~~~~~g~iD~lVnnA  123 (287)
T 3rku_A          109 LPQEFKDIDILVNNA  123 (287)
T ss_dssp             SCGGGCSCCEEEECC
T ss_pred             HHHhcCCCCEEEECC
Confidence            1 1225689999874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=86.15  E-value=2.3  Score=38.50  Aligned_cols=81  Identities=15%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~~  216 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  .++.++.+|+.+..--... ....+   ..+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG--RGAVHHVVDLTNEVSVRALIDFTID---TFG   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHHH---HcC
Confidence            57789999987653   566677779999999999876666555552  4788889998875422111 11111   124


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|--
T Consensus        85 ~id~lv~nAg   94 (271)
T 3tzq_B           85 RLDIVDNNAA   94 (271)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998743

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.13  E-value=1.3  Score=41.97  Aligned_cols=49  Identities=24%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~  181 (371)
                      .+..+.+.++++||-+|+|. |.++..+++. |++|++++.+++-.+.+++
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            34455788999999999875 7777777775 8899999999988888876

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=86.12  E-value=3.3  Score=38.69  Aligned_cols=46  Identities=26%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             HhcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450          136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~  181 (371)
                      ...+.++++||-+|+  |.|..+..++.. |++|++++.+++..+.+++
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            346778999999995  678777777764 8899999999988887765

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=86.01  E-value=3  Score=37.27  Aligned_cols=84  Identities=13%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++.++.-.+.+.+.+... .++.++.+|..+...-. ......+.  ..
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~   90 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM--FG   90 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH--HT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH--hC
Confidence            46788888875442   34455566899999999987666555554433 37888999987653211 11111110  01


Q ss_pred             CCeeEEEecCC
Q 017450          216 SGFAKVVANIP  226 (371)
Q Consensus       216 ~~~d~VVaNlP  226 (371)
                      +..|++|.|.-
T Consensus        91 ~~id~li~~Ag  101 (266)
T 1xq1_A           91 GKLDILINNLG  101 (266)
T ss_dssp             TCCSEEEEECC
T ss_pred             CCCcEEEECCC
Confidence            46799987743

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=86.00  E-value=1.6  Score=39.20  Aligned_cols=81  Identities=15%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  .++.++.+|+.+...-....+...  ...+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   81 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELG--AAVRFRNADVTNEADATAALAFAK--QEFGH   81 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            56789999987664   556667779999999998776555444432  378889999887542211111111  11246


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        82 id~lv~nA   89 (257)
T 3tpc_A           82 VHGLVNCA   89 (257)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=85.95  E-value=3.1  Score=38.17  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEe-CCHHHHHHHHHHhc-cC-CCeEEEEcccccch
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA-SI-DQLKVLQEDFVKCH  200 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE-~d~~~i~~a~~~~~-~~-~~v~vi~gD~~~~~  200 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++ ++++-.+.+.+.+. .. .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            46788888876553   4555666799999999 99877766655553 22 37889999988754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=85.92  E-value=2.2  Score=39.86  Aligned_cols=47  Identities=23%  Similarity=0.315  Sum_probs=38.2

Q ss_pred             HhcCCCCCEEEEEc--CcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          136 AAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       136 ~l~~~~~~~VLEIG--~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ...++++++||=+|  .|.|..+..+++. |++|++++.+++-.+.+++.
T Consensus       135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  184 (325)
T 3jyn_A          135 TYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL  184 (325)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            34677899999998  3568788777775 88999999999988888754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.90  E-value=2.8  Score=39.02  Aligned_cols=46  Identities=11%  Similarity=0.115  Sum_probs=36.8

Q ss_pred             HhcCCCCCEEEEEc--CcccHHHHHHHH-hCCeEEEEeCCHHHHHHHHH
Q 017450          136 AAAVQEGDIVLEIG--PGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       136 ~l~~~~~~~VLEIG--~G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~  181 (371)
                      ...+.++++||-+|  .|.|..+..++. .|++|++++.+++..+.+++
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            45677899999999  466777766666 48899999999988888776

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=85.79  E-value=1.6  Score=41.14  Aligned_cols=87  Identities=15%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             ccCcccCCCH----HHH--HHHHHHhc-----CCCCCEEEEEcC------cccHHHHHHHHh---CCeEEEEeCCHHHHH
Q 017450          118 SLGQHYMLNS----EIN--DQLAAAAA-----VQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVG  177 (371)
Q Consensus       118 ~lGQ~fl~~~----~v~--~~i~~~l~-----~~~~~~VLEIG~------G~G~lt~~La~~---~~~V~aIE~d~~~i~  177 (371)
                      .+|+....++    +++  ..+++.+.     +..+.+|||+|+      ..|..  .+.+.   |+.|+++|+.+--. 
T Consensus        75 nyg~~~~lp~g~~~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-  151 (344)
T 3r24_A           75 NYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-  151 (344)
T ss_dssp             CCSCCTTSCTTCCHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-
T ss_pred             cCCCCCCCCCCcEeeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-
Confidence            4566444443    333  34555553     346889999996      67773  33332   45899999976421 


Q ss_pred             HHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       178 ~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                              ..+ .+++||..+..             ...++|+|++...-+.
T Consensus       152 --------da~-~~IqGD~~~~~-------------~~~k~DLVISDMAPNt  181 (344)
T 3r24_A          152 --------DAD-STLIGDCATVH-------------TANKWDLIISDMYDPR  181 (344)
T ss_dssp             --------SSS-EEEESCGGGEE-------------ESSCEEEEEECCCCTT
T ss_pred             --------CCC-eEEEccccccc-------------cCCCCCEEEecCCCCc
Confidence                    113 45899976643             2367999999865443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=85.63  E-value=1.6  Score=45.48  Aligned_cols=33  Identities=27%  Similarity=0.233  Sum_probs=25.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh----------C----CeEEEEeCCH
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA----------G----ATVLAIEKDQ  173 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~----------~----~~V~aIE~d~  173 (371)
                      +.-+|+|+|.|+|.....+.+.          .    .+++++|.++
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p  104 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYP  104 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCC
Confidence            3459999999999977766542          1    3799999954

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=85.62  E-value=3.7  Score=37.50  Aligned_cols=77  Identities=19%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+++++.-.+.+.+.+  .+++.++.+|+.+..--   ..+.+   ..+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v---~~~~~---~~~~   86 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSSV---RRFAD---GVSG   86 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHHH---HHHHH---TCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHHH---HHHHH---hcCC
Confidence            57889999877554   45556667999999999988776665544  24788999998875421   12222   1246


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        87 iD~lv~nA   94 (291)
T 3rd5_A           87 ADVLINNA   94 (291)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=85.58  E-value=1.4  Score=43.78  Aligned_cols=70  Identities=13%  Similarity=0.258  Sum_probs=47.9

Q ss_pred             CEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .+|+=+|||  ..+..+++    .|..|+.||.|++.++.+.+.+    .+.+++||+.+.+.-..        ..-...
T Consensus         4 M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~----~~~~i~Gd~~~~~~L~~--------Agi~~a   69 (461)
T 4g65_A            4 MKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY----DLRVVNGHASHPDVLHE--------AGAQDA   69 (461)
T ss_dssp             EEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS----SCEEEESCTTCHHHHHH--------HTTTTC
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc----CcEEEEEcCCCHHHHHh--------cCCCcC
Confidence            467777775  44555554    4678999999999999888776    57899999988653211        133556


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |.+++-.+
T Consensus        70 d~~ia~t~   77 (461)
T 4g65_A           70 DMLVAVTN   77 (461)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEEcC
Confidence            77776433

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=85.48  E-value=3.2  Score=37.14  Aligned_cols=80  Identities=16%  Similarity=0.102  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+.  +++.++.+|..+.+-- .......+   ..+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYARE---EFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            46789988876553   455566679999999999876665544432  3678888998764321 11111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~iD~lv~nA   87 (254)
T 1hdc_A           79 SVDGLVNNA   87 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999875

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=85.42  E-value=1.9  Score=38.14  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++.+ +.-.+.+.+.+... .++.++.+|+.+...-. ....+.+   .
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVA---K   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH---H
Confidence            46788877765432   344455568999999998 55555444444332 37889999988754211 1111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.||.|.-
T Consensus        83 ~g~id~vi~~Ag   94 (258)
T 3afn_B           83 FGGIDVLINNAG   94 (258)
T ss_dssp             HSSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899997753

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=85.40  E-value=2.5  Score=38.95  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC--HHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD--QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d--~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+  +...+.+.+..... .++.++.+|+.+...-+... .+.+   
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---  124 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE---  124 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH---
Confidence            57899999977654   455666779999999987  33444444444333 37888899988754221111 1111   


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+..|++|.|-
T Consensus       125 ~~g~iD~lv~nA  136 (294)
T 3r3s_A          125 ALGGLDILALVA  136 (294)
T ss_dssp             HHTCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            125689998774

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=85.36  E-value=4.5  Score=38.41  Aligned_cols=61  Identities=18%  Similarity=0.132  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCC-HHHHHHHHHHhccC-----------------------CCeEEEEccc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-----------------------DQLKVLQEDF  196 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~~-----------------------~~v~vi~gD~  196 (371)
                      +...|+.+|||.......|...+..+.-+|+| ++.++.-++.+...                       ++.+++-+|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            45789999999999999998864455666666 67666555554332                       4788999999


Q ss_pred             ccchh
Q 017450          197 VKCHI  201 (371)
Q Consensus       197 ~~~~~  201 (371)
                      .+.++
T Consensus       177 ~d~~w  181 (334)
T 1rjd_A          177 NDITE  181 (334)
T ss_dssp             TCHHH
T ss_pred             CCcHH
Confidence            88654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=85.35  E-value=3.5  Score=36.79  Aligned_cols=83  Identities=20%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchh-hhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHI-RSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~-~~~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++. ++...+.+.+.+... .++.++.+|+.+.+. ......+.+   .
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   96 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS---H   96 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---H
Confidence            46789988865332   44455556899999998 776665555544432 378889999887532 111111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.+|.|.-
T Consensus        97 ~~~~d~vi~~Ag  108 (274)
T 1ja9_A           97 FGGLDFVMSNSG  108 (274)
T ss_dssp             HSCEEEEECCCC
T ss_pred             cCCCCEEEECCC
Confidence            246899987753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=85.28  E-value=2.3  Score=39.76  Aligned_cols=46  Identities=30%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             hcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       137 l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+.++++||-+|+  |.|.++..+++. |++|++++.+++-.+.+++.
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  192 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY  192 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            46778999999994  567777777775 88999999999888877653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=85.23  E-value=1.6  Score=43.40  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHhcCC--CCCEEEEEcCcc-cHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQ--EGDIVLEIGPGT-GSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~--~~~~VLEIG~G~-G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      +..++-+..+...+...  +-++|+=+|.|. |+..+..++...+|.-||.|++.++.+.+.+.   +..+++||+.+.+
T Consensus       215 i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~---~~~Vi~GD~td~~  291 (461)
T 4g65_A          215 VAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELE---NTIVFCGDAADQE  291 (461)
T ss_dssp             EEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCT---TSEEEESCTTCHH
T ss_pred             EeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCC---CceEEeccccchh
Confidence            34445566666666533  456898888763 34333344456799999999999999888764   7889999999865


Q ss_pred             h
Q 017450          201 I  201 (371)
Q Consensus       201 ~  201 (371)
                      +
T Consensus       292 ~  292 (461)
T 4g65_A          292 L  292 (461)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=85.18  E-value=3.9  Score=36.68  Aligned_cols=83  Identities=17%  Similarity=0.181  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++    .|. ++..|++.|++|+.++++++..+.+.+.....+.+.++.+|..+...-.. .....+   .
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE---A   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH---H
Confidence            46789999975    333 44556667999999999876222222222222457888999887542111 111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus        84 ~g~iD~lv~~Ag   95 (261)
T 2wyu_A           84 FGGLDYLVHAIA   95 (261)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=85.12  E-value=3.6  Score=36.56  Aligned_cols=82  Identities=20%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--------CCeEEEEcccccchhh-hhhhhH
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------DQLKVLQEDFVKCHIR-SHMLSL  208 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--------~~v~vi~gD~~~~~~~-~~~~~l  208 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++.++.-.+.+.+.+...        .++.++.+|+.+...- ......
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            46789988876553   44555667899999999987766555444321        3678899998875321 111111


Q ss_pred             HHhhccCCCe-eEEEecC
Q 017450          209 FERRKSSSGF-AKVVANI  225 (371)
Q Consensus       209 ~~~~~~~~~~-d~VVaNl  225 (371)
                      .+   ..+.. |+||.|.
T Consensus        86 ~~---~~g~i~d~vi~~A  100 (264)
T 2pd6_A           86 QA---CFSRPPSVVVSCA  100 (264)
T ss_dssp             HH---HHSSCCSEEEECC
T ss_pred             HH---HhCCCCeEEEECC
Confidence            11   11344 8898774

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=85.06  E-value=1.7  Score=40.58  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC----------HHHHHHHHHHhccC-CCeEEEEcccccchhhhh-h
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-M  205 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d----------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~  205 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++++          ....+.+.+.+... +++.++.+|+.+...-.. .
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            57889999987553   556666779999999987          45555544444433 478888899887543211 1


Q ss_pred             hhHHHhhccCCCeeEEEecC
Q 017450          206 LSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNl  225 (371)
                      ..+.+   ..+..|++|.|-
T Consensus       106 ~~~~~---~~g~iD~lv~nA  122 (322)
T 3qlj_A          106 QTAVE---TFGGLDVLVNNA  122 (322)
T ss_dssp             HHHHH---HHSCCCEEECCC
T ss_pred             HHHHH---HcCCCCEEEECC
Confidence            11111   124689999874

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=85.02  E-value=3.2  Score=36.98  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++.-.+.+.+.+.  .++.++.+|+.+...- .....+.+   ..+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   85 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG--NNCVFAPADVTSEKDVQTALALAKG---KFG   85 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHH---HCC
Confidence            56789999986543   445555668999999998765554444442  3788999998875321 11111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|.
T Consensus        86 ~id~li~~A   94 (265)
T 2o23_A           86 RVDVAVNCA   94 (265)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=84.85  E-value=3.9  Score=36.28  Aligned_cols=82  Identities=13%  Similarity=0.094  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++..+.+.+.+... .++.++.+|..+..--.. .....+   .
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~   79 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVS---Q   79 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            35678878876553   45566667999998887 555555555554433 378889999987542211 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        80 ~g~id~lv~nA   90 (246)
T 3osu_A           80 FGSLDVLVNNA   90 (246)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=84.73  E-value=3.6  Score=38.57  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEe-CCHHHHHHHHHHhc-cC-CCeEEEEcccccch
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA-SI-DQLKVLQEDFVKCH  200 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE-~d~~~i~~a~~~~~-~~-~~v~vi~gD~~~~~  200 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++ ++++-.+.+.+.+. .. .++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCch
Confidence            46788888876553   4555666799999999 99877766655543 22 37889999988754

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=84.69  E-value=3.1  Score=37.93  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH-HHHHHHHHHhc-c-CCCeEEEEccccc----chh-hhhhhhHH
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFA-S-IDQLKVLQEDFVK----CHI-RSHMLSLF  209 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~-~~i~~a~~~~~-~-~~~v~vi~gD~~~----~~~-~~~~~~l~  209 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.+++++ +..+.+.+.+. . ..++.++.+|+.+    ... ......+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            46788888876553   4556666799999999987 55554444443 2 2478899999987    321 11111111


Q ss_pred             HhhccCCCeeEEEecC
Q 017450          210 ERRKSSSGFAKVVANI  225 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNl  225 (371)
                      +   ..+..|++|.|-
T Consensus       102 ~---~~g~iD~lvnnA  114 (288)
T 2x9g_A          102 R---AFGRCDVLVNNA  114 (288)
T ss_dssp             H---HHSCCCEEEECC
T ss_pred             H---hcCCCCEEEECC
Confidence            1   124689999874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=84.65  E-value=2.5  Score=37.88  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHH-HHHHHHHhcc--CCCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-VGLVRERFAS--IDQLKVLQEDFVKCHIR-SHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~-i~~a~~~~~~--~~~v~vi~gD~~~~~~~-~~~~~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.+++++.- .+.+.+.+..  ..++.++.+|..+...- .......+   
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR---   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHH---
Confidence            45788888876553   445556679999999998765 5544444432  23688888998875421 11111111   


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+..|++|.|-
T Consensus        80 ~~g~iD~lv~~A   91 (260)
T 1x1t_A           80 QMGRIDILVNNA   91 (260)
T ss_dssp             HHSCCSEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            124689999874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=84.63  E-value=3.8  Score=36.96  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +.+..+.+.+.+... +++.++.+|+.+..--. ......+   .
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA---H   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            56789999987654   55666677999998775 455555555554433 47889999998754221 1111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        94 ~g~id~lvnnA  104 (270)
T 3is3_A           94 FGHLDIAVSNS  104 (270)
T ss_dssp             HSCCCEEECCC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=84.52  E-value=1.8  Score=40.86  Aligned_cols=49  Identities=29%  Similarity=0.327  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCCEEEEEcC--cccHHHHHHHH-hCCeEEEEeCCHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGP--GTGSLTNVLLN-AGATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~--G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~  181 (371)
                      .+..+.+.++++||-+|+  |.|..+..++. .|++|++++.+++..+.+++
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            334456778999999998  57777777776 48899999999887777765

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=84.51  E-value=1.1  Score=44.48  Aligned_cols=64  Identities=25%  Similarity=0.384  Sum_probs=45.0

Q ss_pred             cccCCCHHHHH--------HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C---CeEEEEeCCHHHHHHHHHHhc
Q 017450          121 QHYMLNSEIND--------QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G---ATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       121 Q~fl~~~~v~~--------~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----~---~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      -.|+|.+++-.        .+++.......-.|+|+|+|.|.|..-+++.    +   .+++.||+++.+.+.-++++.
T Consensus       109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          109 SDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             -CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            47999887633        3333322222469999999999998877652    2   379999999998887777664

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=84.49  E-value=3.4  Score=37.41  Aligned_cols=82  Identities=17%  Similarity=0.166  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++    .|. ++..|++.|++|+.++++++..+.+.+.....+++.++.+|..+...-.... ...+   .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK---D   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            46789999964    333 4445555689999999987622222222122235778899988754221111 1111   2


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        82 ~g~id~lv~nA   92 (275)
T 2pd4_A           82 LGSLDFIVHSV   92 (275)
T ss_dssp             TSCEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35689999874

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=84.46  E-value=3.8  Score=36.93  Aligned_cols=82  Identities=12%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEe-CCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE-~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.++ .+....+......... .++.++.+|+.+..--.... .+.+   .
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~  100 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA---D  100 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH---H
Confidence            46788888876553   4555666789999998 5665555544444332 47899999998754322111 1111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|.+|.|-
T Consensus       101 ~g~id~li~nA  111 (269)
T 3gk3_A          101 FGKVDVLINNA  111 (269)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=84.18  E-value=3.6  Score=37.41  Aligned_cols=82  Identities=18%  Similarity=0.098  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++    .|. ++..|++.|++|+.++.+++..+.+.+.....+++.++.+|+.+..--.. .....+   .
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEE---N   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            56789999964    333 44555667999999999876222222222222457788899887542211 111111   2


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        97 ~g~iD~lv~~A  107 (285)
T 2p91_A           97 WGSLDIIVHSI  107 (285)
T ss_dssp             TSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35689999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=84.16  E-value=2  Score=40.23  Aligned_cols=47  Identities=17%  Similarity=0.367  Sum_probs=37.4

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHH-hCCeEEEEeCCHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLN-AGATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~--G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~  181 (371)
                      ....+.++++||-.|+  |.|..+..++. .|++|++++.+++..+.+++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~  188 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ  188 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            4456788999999998  67777776666 48899999999988887743

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=84.08  E-value=4.4  Score=36.71  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEE-eCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aI-E~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.+ ..++...+.+.+.+... +++.++.+|+.+...-.... .+.+   .
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE---A  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            57889999987664   566677779999887 45555555555554433 47889999998754321111 1111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       103 ~g~iD~lvnnA  113 (267)
T 3u5t_A          103 FGGVDVLVNNA  113 (267)
T ss_dssp             HSCEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999884

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=84.07  E-value=2.9  Score=39.25  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=39.3

Q ss_pred             HHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~  181 (371)
                      .+....+.++++||-+|+| .|.++..+++. |++|++++.+++-.+.+++
T Consensus       156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            3344577889999999986 57777777764 8899999999998888865

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=83.96  E-value=6.1  Score=34.77  Aligned_cols=80  Identities=11%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCe-EEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v-~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++++++.-.+.+.+.+.  .++ .++.+|+.+...-.   .+.+.....+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~---~~~~~~~~~~   84 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG--AAVAARIVADVTDAEAMT---AAAAEAEAVA   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEEECCTTCHHHHH---HHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--ccceeEEEEecCCHHHHH---HHHHHHHhhC
Confidence            46789988876442   444555668999999999876665555442  256 78899987654211   1111100124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|.
T Consensus        85 ~id~li~~A   93 (254)
T 2wsb_A           85 PVSILVNSA   93 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            679999874

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=83.78  E-value=3.5  Score=37.15  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEE-eCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aI-E~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+.+ ..+++..+.+.+.+... +++.++.+|+.+...-.. ...+.+   .
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~  101 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR---Q  101 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---h
Confidence            46788888876554   445556678998766 77877777666655443 478899999987542211 111111   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       102 ~g~id~li~nA  112 (272)
T 4e3z_A          102 FGRLDGLVNNA  112 (272)
T ss_dssp             HSCCCEEEECC
T ss_pred             CCCCCEEEECC
Confidence            24689999874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=83.77  E-value=3.6  Score=37.33  Aligned_cols=82  Identities=16%  Similarity=0.137  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHH-------HHHHHHHhc-cCCCeEEEEcccccchhhhhhh-hH
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-------VGLVRERFA-SIDQLKVLQEDFVKCHIRSHML-SL  208 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~-------i~~a~~~~~-~~~~v~vi~gD~~~~~~~~~~~-~l  208 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++..-       ++.+.+.+. ..+++.++.+|+.+..--.... .+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            56789999987664   556667779999999988642       222222222 2347889999998754221111 11


Q ss_pred             HHhhccCCCeeEEEecC
Q 017450          209 FERRKSSSGFAKVVANI  225 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNl  225 (371)
                      .+   ..+..|++|.|-
T Consensus        85 ~~---~~g~iD~lvnnA   98 (274)
T 3e03_A           85 VD---TFGGIDILVNNA   98 (274)
T ss_dssp             HH---HHSCCCEEEECC
T ss_pred             HH---HcCCCCEEEECC
Confidence            11   125689999884

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=83.76  E-value=2  Score=40.82  Aligned_cols=49  Identities=20%  Similarity=0.242  Sum_probs=39.1

Q ss_pred             HHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      +..+.+.++++||-+|+| .|.++..+++. |++|++++.+++-.+.+++.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l  222 (360)
T 1piw_A          172 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM  222 (360)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence            344677899999999986 37777777774 88999999998888888763

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=83.74  E-value=3.2  Score=36.47  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEE-eCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aI-E~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|.+|+++ ..++.-.+.+.+.+... .++.++.+|+.+...-. ......+   .
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   80 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMD---A   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHH---H
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---h
Confidence            46788888876442   445555678999999 56655555444444332 47889999988753211 1111111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|.+|.|.-
T Consensus        81 ~~~~d~vi~~Ag   92 (247)
T 2hq1_A           81 FGRIDILVNNAG   92 (247)
T ss_dssp             HSCCCEEEECC-
T ss_pred             cCCCCEEEECCC
Confidence            246899998754

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=83.70  E-value=3.4  Score=37.28  Aligned_cols=83  Identities=6%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC---HHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD---QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d---~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~  213 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+   .+..+.+.+.+... .++.++.+|+.+..--....+.+.  .
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~   87 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE--K   87 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--H
Confidence            56789999987664   445555568999998764   34444444444433 378899999987543221111111  1


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+..|++|.|-
T Consensus        88 ~~g~iD~lvnnA   99 (262)
T 3ksu_A           88 EFGKVDIAINTV   99 (262)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            125689999874

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=83.61  E-value=2.9  Score=37.81  Aligned_cols=80  Identities=14%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      .+++||=.|++.|.   ++..|++.|.+|++++.++.-.+.+.+...  +++.++.+|+.+...-+. ...+.+   ..+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~---~~g   78 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP--DRAEAISLDVTDGERIDVVAADVLA---RYG   78 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT--TTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CCceEEEeeCCCHHHHHHHHHHHHH---hCC
Confidence            45688888876442   445556679999999999876665554432  378999999987542211 111111   124


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~id~lv~~A   87 (281)
T 3m1a_A           79 RVDVLVNNA   87 (281)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=83.48  E-value=5.3  Score=36.20  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+ .+..+.+.+.+... +++.++.+|..+...-+ ......+   .
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE---A  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---H
Confidence            57899999987664   556667779999988654 45555554444433 47889999998754221 1111211   1


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus       107 ~g~iD~lvnnA  117 (271)
T 3v2g_A          107 LGGLDILVNSA  117 (271)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCcEEEECC
Confidence            24689999874

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=83.23  E-value=4.6  Score=36.35  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      .++++|=.|++.|.   ++..|++.|++|+.++++++-.+.+.+.+...   ..+..+.+|..+...   ...+.+   .
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~---~~~~~~---~   82 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQG---CQDVIE---K   82 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHH---HHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHH---HHHHHH---h
Confidence            56789988876553   45566667999999999988776655554321   256788888876432   122222   2


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|-
T Consensus        83 ~g~id~lv~nA   93 (267)
T 3t4x_A           83 YPKVDILINNL   93 (267)
T ss_dssp             CCCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35689999874

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=83.21  E-value=3.6  Score=36.74  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~  214 (371)
                      .+++||=.|++.|.   ++..|++.|++|+.++. ++...+.+.+..... +++.++.+|+.+.+.-.... .+.+   .
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~   82 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMS---H   82 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH---H
Confidence            35688888876654   55666677999999865 455556555555433 37899999998754322111 1111   1


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+..|++|.|--
T Consensus        83 ~g~id~lv~~Ag   94 (264)
T 3i4f_A           83 FGKIDFLINNAG   94 (264)
T ss_dssp             HSCCCEEECCCC
T ss_pred             hCCCCEEEECCc
Confidence            246899997754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=83.15  E-value=2  Score=40.28  Aligned_cols=49  Identities=18%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             HHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHh
Q 017450          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~  183 (371)
                      ....++++++||-+|+  |.|..+..++.. |++|++++.+++-.+.+.+.+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~  194 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL  194 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            5667889999999998  678888777765 889999999998888774443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=83.12  E-value=2.5  Score=41.39  Aligned_cols=54  Identities=24%  Similarity=0.418  Sum_probs=39.3

Q ss_pred             CCEEEEEcCcc-cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          142 GDIVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       142 ~~~VLEIG~G~-G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      ..+|+=+|+|. |. ++..|.+.|..|++||.|++.++.+++.     .+.++.||+.+.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~   59 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-----GMKVFYGDATRMD   59 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-----TCCCEESCTTCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHH
Confidence            45688888864 22 2333344588999999999999988753     5678999998764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=83.08  E-value=2.6  Score=37.53  Aligned_cols=83  Identities=12%  Similarity=-0.010  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEe-CCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE-~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      ++++||=.|++.|.   ++..|++.|.+|+.++ .+........+.... ..++.++.+|+.+.+--....+.+.  ...
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   89 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVK--AEV   89 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence            56788888876654   5566666788999887 444333333333322 2478899999987543221111111  123


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        90 g~id~lv~~A   99 (256)
T 3ezl_A           90 GEIDVLVNNA   99 (256)
T ss_dssp             CCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	3e-35
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	2e-20
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	7e-20
d1yuba_	245	c.66.1.24 (A:) rRNA adenine dimethylase {Streptoco	2e-19
d1qama_	235	c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus	8e-16
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	5e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	1e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	5e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	3e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	8e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	0.001
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.001
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.002
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.002

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (325), Expect = 3e-35
 Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 46/237 (19%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAGAT--V 166
            +   G  Y+ N  + +++     +       E   VL++ PG G  + +  N       
Sbjct: 11  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 70

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA------- 219
             +EK   +   +  +F     L++L+ D       S+++            +       
Sbjct: 71  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 129

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 130 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 188

Query: 272 INIFVNFYSEPE---------------------YKFKVPRTNFFPQPKVDAAVVTFK 307
            ++    +++ +                               +P      A+V   
Sbjct: 189 CSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMD 245

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 2e-20
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 18/193 (9%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  + 
Sbjct: 1   QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60

Query: 181 ERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           +R        +L+VL  D +K  +                    VAN+P+ IS+  + +L
Sbjct: 61  KRVQGTPVASKLQVLVGDVLKTDLPFFD--------------TCVANLPYQISSPFVFKL 106

Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQP 297
           L     F   +L+ Q E A   +        Y  ++I     +  ++  KV + NF P P
Sbjct: 107 LLHRPFFRCAILMFQREFA-LRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPP 165

Query: 298 KVDAAVVTFKLKQ 310
           KV+++VV  + K 
Sbjct: 166 KVESSVVRIEPKN 178

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score = 85.7 bits (211), Expect = 7e-20
 Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQP-------LRVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
            D  +++  +LQ+E     +     +  Y  +++   +Y       +VP + F P PKVD
Sbjct: 114 TDAIADMHFMLQKEVV-NRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 172

Query: 301 AAVVTFK 307
           +AVV   
Sbjct: 173 SAVVRLV 179

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

 Score = 84.2 bits (207), Expect = 2e-19
 Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 21/213 (9%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L  E+     ++ ++ +D ++    +                K+V NIP+++ST +I
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ------------RYKIVGNIPYHLSTQII 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           K+++         +++ +                +R + + ++     +   K+P   F 
Sbjct: 111 KKVVFESRASDIYLIVEEGFYK-------RTLDIHRTLGLLLHTQVSIQQLLKLPAECFH 163

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           P+PKV++ ++       TD P     K +   V
Sbjct: 164 PKPKVNSVLIKLTRHT-TDVP-DKYWKLYTYFV 194

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

 Score = 73.7 bits (180), Expect = 8e-16
 Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 21/207 (10%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  +     
Sbjct: 1   QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
            +    D  +VL +D ++     +               K+  NIP+NISTD+I++++  
Sbjct: 61  NKLVDHDNFQVLNKDILQFKFPKNQ------------SYKIFGNIPYNISTDIIRKIVFD 108

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
             I  E+ L+++   A RL+         R + +F+    +      VPR  F P+PKV+
Sbjct: 109 -SIADEIYLIVEYGFAKRLLNT------KRSLALFLMAEVDISILSMVPREYFHPKPKVN 161

Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMV 327
           ++++    K+     +    + +   V
Sbjct: 162 SSLIRLNRKK--SRISHKDKQKYNYFV 186

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 5/148 (3%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           E+   +   A   + D+ +++G GTG +T  L      V AI+++   +           
Sbjct: 20  EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79

Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
                  D V         +L +                  I   +  +L P G I    
Sbjct: 80  -----LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134

Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIF 275
           +LL  +  A+  +           +NI 
Sbjct: 135 ILLETKFEAMECLRDLGFDVNITELNIA 162

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           +L   AA++  + VL++  G G + N        V+A +  + ++
Sbjct: 6   KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDIL 50

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           H+ L       +   A  +    VL+IG G G             + ++  + M
Sbjct: 2   HHSL-----GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM 50

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA--- 184
           + + +   +  GD VLE G G+G ++  L  A      V++ E  +    L ++ +    
Sbjct: 88  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147

Query: 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVIKQLLPMGD 242
              +L  ++E           +S       S  F  V  ++  P          L   G 
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 207

Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
                V ++     + L++  +RT E      
Sbjct: 208 C---AVYVVNITQVIELLD-GIRTCELALSCE 235

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 14/176 (7%)

Query: 113 RFPRKSLGQHYMLN---SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLA 168
           R    S  +H + N    E    L     ++ G  +L++G G+G +      + G T   
Sbjct: 2   RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61

Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
           I+         + R           E+         + +      ++             
Sbjct: 62  IDMSSLFTAQAKRRA----------EELGVSERVHFIHNDAAGYVANEKCDVAACVGATW 111

Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
           I+         +        ++L  E   R +  +   ++   ++   +F + P  
Sbjct: 112 IAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGL 167

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEK 171
            G H  ML  E+      + +     + +  +VL++G GTG L      AGA  V+ IE 
Sbjct: 5   FGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC 64

Query: 172 DQHM 175
               
Sbjct: 65  SSIS 68

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
            +     ++ G  +LE+G G+G++++ +   LN   T+  +E+D+  +    +  +
Sbjct: 76  YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 127 SEINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
           SE+N  L     +  V  G  VL    G     + L   G  V+  E  +  V       
Sbjct: 3   SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 62

Query: 184 ASIDQLKVLQEDFVKCHIRSHML 206
                +    +  V       + 
Sbjct: 63  GEQPHITSQGDFKVYAAPGIEIW 85

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML  +I      D +     + +  +VL++G GTG L+     AGA  VL +++
Sbjct: 7   YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ 66

Query: 172 DQHMV 176
            + + 
Sbjct: 67  SEILY 71

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML   +      + +     + +  IVL++G GTG L+      GA  V+ ++ 
Sbjct: 10  YGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM 69

Query: 172 DQHM 175
              +
Sbjct: 70  SSII 73

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +G      +E    L           VL++  GTG  + +L+  G +V +++    M+  
Sbjct: 34  IGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93

Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
             +   +    +  +  F K  I        ++   +      V         +    L 
Sbjct: 94  ALKERWN----RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI-----CLGNSFAHLP 144

Query: 239 PMGDIFSEVVLLLQEETALRLVEP 262
                 SE  L L+      +V P
Sbjct: 145 DSKGDQSEHRLALKN--IASMVRP 166

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
               +LE+G   G  T+ L      +  +E  +  
Sbjct: 20  RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 132 QLAAAAA------VQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERF 183
           +LAA         ++  + VL +G  +G+  + L  +     + A+E        + E  
Sbjct: 41  KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100

Query: 184 ASIDQLKVLQEDFVKCH 200
              + +  L  D  K  
Sbjct: 101 RERNNIIPLLFDASKPW 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	100.0
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	100.0
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	100.0
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	100.0
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	100.0
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.67
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.61
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.6
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.6
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.53
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.53
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.51
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.46
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.43
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.41
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.31
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.3
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.29
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.28
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.27
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.26
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.24
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.23
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.23
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.2
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.19
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.18
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.18
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.17
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.16
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.11
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.09
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.08
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.08
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.08
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.08
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.08
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.08
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.07
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.07
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.07
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.07
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.06
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.06
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.05
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.05
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.04
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.04
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.02
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.02
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.0
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.98
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.93
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.93
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.93
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.91
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.9
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.9
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.89
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.88
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.88
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.86
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.84
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.84
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.82
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.82
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.79
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.78
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.76
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.74
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.7
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.66
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.65
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.65
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.62
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.51
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.28
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.18
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.01
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.0
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.95
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.86
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.82
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.79
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.78
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.73
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.69
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.65
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.61
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.55
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.54
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.3
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.12
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.03
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.03
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.99
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.96
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.9
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.89
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.84
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.71
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.69
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.6
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.34
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.21
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.02
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.82
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.59
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.03
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.98
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.73
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.54
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.35
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.2
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.03
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.97
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.61
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.44
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.26
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.22
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.11
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.08
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.05
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.8
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.73
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.59
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.57
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.57
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.5
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.46
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.31
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.23
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.22
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.15
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.0
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.84
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.75
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.72
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.4
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.34
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.27
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.13
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.1
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.0
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	90.92
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.79
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.79
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.77
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.67
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.5
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.47
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.2
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.17
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.06
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.83
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.68
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	89.22
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.19
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.04
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.98
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.94
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	88.66
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.5
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.26
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.17
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	88.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.92
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.85
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.81
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.42
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.12
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.05
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	86.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.44
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.36
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	84.35
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	84.08
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	83.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.71
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.51
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	83.21
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	82.78
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.07

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-51  Score=381.52  Aligned_cols=231  Identities=22%  Similarity=0.335  Sum_probs=209.9

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      ||||+|+.++++|++.+.+.+++.|||||||+|.+|..|++.+.+|+|||+|+++++.+++++...++++++++|+++++
T Consensus         1 QnFL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_           1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence            89999999999999999999999999999999999999999999999999999999999988766679999999999998


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeeeec
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~~~  280 (371)
                      +.+...       ..+....||||+||+|+++|+.+++.....+..+++|+|||+|+|++ +.||++.||+||+++|+++
T Consensus        81 ~~~~~~-------~~~~~~~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~QkEvA~Ri~-A~~gsk~yg~Lsv~~q~~~  152 (252)
T d1qyra_          81 FGELAE-------KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYC  152 (252)
T ss_dssp             HHHHHH-------HHTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHHHE
T ss_pred             cccccc-------ccCCCeEEEecchHHHHHHHHHHhcccccceehhhhhhhHHHHHHhc-cCCCChhhhHHHhhhhhcc
Confidence            765321       12456789999999999999999988777788899999999999999 8999999999999999999


Q ss_pred             cceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHHHHcCCCC
Q 017450          281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILP  360 (371)
Q Consensus       281 ~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~~~~~~~~  360 (371)
                      +++..+.||+++|+|+|+|||+||++++++....+ ..+.+.|..+++.+|+||||+|.|+|+++...  ..|+++||+|
T Consensus       153 ~~~~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rRK~l~~~L~~~~~~--~~l~~~~i~~  229 (252)
T d1qyra_         153 NVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFSV--EVLTGMGIDP  229 (252)
T ss_dssp             EEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSC-CSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCH--HHHHHTTCCT
T ss_pred             ccccccccChhhhccccccceeEEEEecccccchh-hhHHHHHHHHHHHHHccchHHHHHHHhhhccH--HHHHHCCCCc
Confidence            99999999999999999999999999998875443 34678899999999999999999999998754  4789999999


Q ss_pred             cc
Q 017450          361 SI  362 (371)
Q Consensus       361 ~~  362 (371)
                      ++
T Consensus       230 ~~  231 (252)
T d1qyra_         230 AM  231 (252)
T ss_dssp             TS
T ss_pred             cc
Confidence            74

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-50  Score=379.99  Aligned_cols=224  Identities=29%  Similarity=0.386  Sum_probs=199.6

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccc
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~  197 (371)
                      ||||+|+.++++|++.+.+.+++.|||||||+|.+|..|++.+++|++||+|+++++.+++.+...   ++++++++|++
T Consensus         1 QnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l   80 (278)
T d1zq9a1           1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   80 (278)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             CCCcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999998754   48999999999


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeee
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN  277 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q  277 (371)
                      +.++              +.++.||||+||+|+++++.+++.....+..+++|+|||+|+|++ +.||++.||+|||++|
T Consensus        81 ~~~~--------------~~~~~vV~NLPY~Iss~il~~~~~~~~~~~~~v~m~QkEvA~Rl~-A~p~~k~yg~LSv~~q  145 (278)
T d1zq9a1          81 KTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRLSINTQ  145 (278)
T ss_dssp             TSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHHHHHHH
T ss_pred             hhhh--------------hhhhhhhcchHHHHHHHHHHHHHhhCCccceeeEeecHHHHHHHh-hhhccchhhhhhhhee
Confidence            9754              346789999999999999999988777888899999999999999 8999999999999999


Q ss_pred             eeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCC---chHHHH
Q 017450          278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDD---SALFVH  354 (371)
Q Consensus       278 ~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~---~~~~~~  354 (371)
                      ++++++++++||+++|+|+|+|||+||+|+|++.+.   ..+.+.|+.++|++|++|||+|.|+|+++...   ...+..
T Consensus       146 ~~~~v~~~~~Vp~~~F~P~PkVdSavv~l~pk~~~~---~~~~~~~~~~vr~~F~~RRK~l~n~Lk~~~~~~~l~~~~~~  222 (278)
T d1zq9a1         146 LLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPP---PINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI  222 (278)
T ss_dssp             HHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCC---SCCHHHHHHHHHHHHTTTTSBHHHHTTSHHHHHHHHHHHHH
T ss_pred             ecceeeEEeecccceeeeccccceEEEEeeccCCCc---hhhHHHHHHHHHHHhCccHHhHHHHHhhhhhHHHHHHhHHH
Confidence            999999999999999999999999999999986532   23678899999999999999999999886422   233444


Q ss_pred             HcCCCCcc
Q 017450          355 KNIILPSI  362 (371)
Q Consensus       355 ~~~~~~~~  362 (371)
                      ..+|+|+.
T Consensus       223 ~~~i~~~~  230 (278)
T d1zq9a1         223 HCSVHNII  230 (278)
T ss_dssp             HHHHHTCC
T ss_pred             hcCCCccc
Confidence            44555544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=100.00  E-value=4.5e-46  Score=343.97  Aligned_cols=214  Identities=24%  Similarity=0.377  Sum_probs=188.3

Q ss_pred             cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      ||||+|++++++|++.+.+.++++|||||||+|.+|..|++.+.+|+|||+|+++++.+++++...++++++++|+++++
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~   80 (235)
T d1qama_           1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK   80 (235)
T ss_dssp             CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred             CCCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999988889999999999987


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeeeec
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~~~  280 (371)
                      +.            ......||||+||+|+++|+.+++.. ..+..+++|+|+|+|+|++ +.     |+.+|+++++++
T Consensus        81 ~~------------~~~~~~vv~NLPYnIss~il~~ll~~-~~~~~~vlm~QkEvA~Ri~-a~-----~~~lsv~~~~~~  141 (235)
T d1qama_          81 FP------------KNQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NT-----KRSLALFLMAEV  141 (235)
T ss_dssp             CC------------SSCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CT-----TSHHHHHHTTTE
T ss_pred             cc------------ccccceeeeeehhhhhHHHHHHHHhh-hhhhhhhhhhhHHHHHhhh-cc-----cccceEEEeecc
Confidence            53            23456899999999999999999865 4567899999999999999 44     356899999999


Q ss_pred             cceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHHHHcCCCC
Q 017450          281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILP  360 (371)
Q Consensus       281 ~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~~~~~~~~  360 (371)
                      +++++++||+++|+|+|||||+||+|+|++.. . ...+.+.|..+++.+|++|||++.+.     ....-.|.++||+|
T Consensus       142 ~~~~~~~V~~~~F~P~PKVdS~vv~l~~k~~~-~-~~~~~~~~~~~v~~~F~~rRK~i~~~-----~~l~~~l~~~~i~r  214 (235)
T d1qama_         142 DISILSMVPREYFHPKPKVNSSLIRLNRKKSR-I-SHKDKQKYNYFVMKWVNKEYKKIFTK-----NQFNNSLKHAGIDD  214 (235)
T ss_dssp             EEEEEEEECGGGSBSCCSSCEEEEEEEECCCS-S-CGGGHHHHHHHHHHHHTTCGGGTCCH-----HHHHHHHHHHTCSC
T ss_pred             ccccccccChhhccccccceEEEEEEEecCCC-C-CccCHHHHHHHHHHHHccccccccCH-----hHHHHHHHHcCCCC
Confidence            99999999999999999999999999998653 2 23467899999999999999998431     11234688888887

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=100.00  E-value=5.6e-47  Score=351.88  Aligned_cols=206  Identities=23%  Similarity=0.377  Sum_probs=185.9

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~  193 (371)
                      ..+++||||||.|+.++++|++.+.+.++++|||||||+|.+|..|++.+.+|+|||+|+++++.+++++...+++++++
T Consensus         2 ~~~~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~   81 (245)
T d1yuba_           2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999987778999999


Q ss_pred             cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (371)
Q Consensus       194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls  273 (371)
                      +|++++++.            ...++.||||+||+|+++|+.+++.. ..+..+++|+|+|+|+|++      +.||++|
T Consensus        82 ~D~l~~~~~------------~~~~~~vv~NLPY~Ist~il~~~l~~-~~~~~~v~m~QkEva~r~~------~~~~~ls  142 (245)
T d1yuba_          82 QDILQFQFP------------NKQRYKIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL------DIHRTLG  142 (245)
T ss_dssp             SCCTTTTCC------------CSSEEEEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH------CGGGSHH
T ss_pred             hhhhccccc------------cceeeeEeeeeehhhhHHHHHHHhhh-chhhhhhhhhhhhHHhhhh------hhhhhhh
Confidence            999998753            35678999999999999999998854 3567799999999999998      4699999


Q ss_pred             eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHh
Q 017450          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLT  340 (371)
Q Consensus       274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~  340 (371)
                      +++|++++++.+++||+++|+|+|+|||+||+|+|++.+ .+ ..+.+.|+.+++.+|++|||++.+
T Consensus       143 v~~q~~~~~~~~~~v~~~~F~P~PkV~S~vi~l~~k~~~-~~-~~~~~~~~~~~~k~f~~~rK~l~~  207 (245)
T d1yuba_         143 LLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTD-VP-DKYWKLYTYFVSKWVNREYRQLFT  207 (245)
T ss_dssp             HHTTTTBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCS-SC-HHHHHHHHHHHHHHHHTCHHHHCS
T ss_pred             hhhhhcceeeeecccCcceEECCCcceEEEEEEEcCCCC-Cc-hhHHHHHHHHHHHHHhhHHHHhcc
Confidence            999999999999999999999999999999999988653 22 234678999999999999999854

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-42  Score=332.55  Aligned_cols=241  Identities=15%  Similarity=0.180  Sum_probs=203.0

Q ss_pred             CCcccccCcccCCCHHHHHHHHHHhcCC------CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhc
Q 017450          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~------~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      .+.++.+||||++|+++++.|++.+++.      .++.|||||||.|.+|..|++.+  .+|++||+|+.+++.+++.+.
T Consensus         9 ~k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_           9 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             hhhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            4678999999999999999999998754      46789999999999999999873  489999999999999999876


Q ss_pred             cCCCeEEEEcccccchhhhhhhhHHHhh----------ccCCCeeEEEecCCCcccHHHHHHhccC----CC----chhH
Q 017450          185 SIDQLKVLQEDFVKCHIRSHMLSLFERR----------KSSSGFAKVVANIPFNISTDVIKQLLPM----GD----IFSE  246 (371)
Q Consensus       185 ~~~~v~vi~gD~~~~~~~~~~~~l~~~~----------~~~~~~d~VVaNlPy~iss~il~~Ll~~----g~----~~~~  246 (371)
                      + ++++++++|++.++....   +.+..          ........||||+||+++++++.+++..    ..    ...+
T Consensus        89 ~-~~~~ii~~D~l~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~~~~~~~l~~~g~~~  164 (322)
T d1i4wa_          89 G-SPLQILKRDPYDWSTYSN---LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVK  164 (322)
T ss_dssp             T-SSCEEECSCTTCHHHHHH---HTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEE
T ss_pred             C-CCcEEEeCchhhcchhhh---hhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHHhccccccccccccce
Confidence            3 689999999998763211   11100          0001234689999999999999887752    11    1346


Q ss_pred             HHHHhhhhHHhhhccCCCCCCCCcceeeeeeeeccceEE---------------------EEeCCCCcccCCCCceEEEE
Q 017450          247 VVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK---------------------FKVPRTNFFPQPKVDAAVVT  305 (371)
Q Consensus       247 ~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~~~~~~~~---------------------~~Vp~~~F~P~PkVdS~vv~  305 (371)
                      +++|+|+|+|+|++ |.||++.||++||++|++|+++.+                     +.||+++|+|+|+|||+||+
T Consensus       165 ~vlm~QkEvA~Rl~-A~pg~k~y~~lSV~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~  243 (322)
T d1i4wa_         165 MLLWMPSTTARKLL-ARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVE  243 (322)
T ss_dssp             EEEEEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEE
T ss_pred             EEEEEeHHHHHHHh-cCCCCccccHHHHHHHHHhceeeecccccccccccccccccccCccccChhccCCCCCCCEEEEE
Confidence            89999999999999 899999999999999999999987                     68999999999999999999


Q ss_pred             EEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHHHHcCCCCccc
Q 017450          306 FKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKNIILPSIF  363 (371)
Q Consensus       306 l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~~~~~~~~~~~  363 (371)
                      |+|+..+     .+.+.|+.+++++|++|||+|.|+|+.+..+....|...+++|.++
T Consensus       244 l~P~~~~-----~~~~~~~~~vr~~F~~RRK~l~~~L~~l~p~~~~~l~~~~~~~~~~  296 (322)
T d1i4wa_         244 MDPIDFD-----FDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL  296 (322)
T ss_dssp             EEECCCC-----SCHHHHHHHHHHHHTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTT
T ss_pred             EecCCCc-----cCHHHHHHHHHHHHHHhHHHHHHHHHHhCcchHHHHHHhCCCcchh
Confidence            9998642     2568899999999999999999999999888888999989888764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.67  E-value=1.6e-16  Score=141.15  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=76.5

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCe
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQL  189 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v  189 (371)
                      .|+.++.| |.++++++..++..+.   .-.|++|||+|||+|.++..++..|+ +|++||+|+.+++.|++|..   ++
T Consensus        19 ~~~~~leQ-y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~---~~   94 (197)
T d1ne2a_          19 NFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GV   94 (197)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc---cc
Confidence            57788999 9999999999876654   33689999999999999999888874 79999999999999999975   78


Q ss_pred             EEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       190 ~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      +++.+|+.++               +++||+||+|+||..
T Consensus        95 ~~~~~D~~~l---------------~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          95 NFMVADVSEI---------------SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             EEEECCGGGC---------------CCCEEEEEECCCC--
T ss_pred             cEEEEehhhc---------------CCcceEEEeCcccch
Confidence            9999998765               257999999999953

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.61  E-value=2.6e-15  Score=134.97  Aligned_cols=146  Identities=16%  Similarity=0.207  Sum_probs=119.7

Q ss_pred             HHHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450           86 AASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (371)
Q Consensus        86 ~r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEI  148 (371)
                      .+.+||+.+.+.+ +++.++.++|...++.   |.             -..|| ++..|.+..+|++.++++++++||||
T Consensus         7 ~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~-~is~P~~~a~ml~~L~l~~g~~VLeI   85 (215)
T d1jg1a_           7 KWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ-TVSAPHMVAIMLEIANLKPGMNILEV   85 (215)
T ss_dssp             HHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTC-EECCHHHHHHHHHHHTCCTTCCEEEE
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhh-hhhhhhhHHHHHHhhccCccceEEEe
Confidence            3577999888776 6889999999876543   11             12355 89999999999999999999999999


Q ss_pred             cCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec-
Q 017450          149 GPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-  224 (371)
Q Consensus       149 G~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-  224 (371)
                      |||+|++|..|++. +.+|++||+++.+++.+++++...  .|+.++++|+.+...            ...+||+|+.+ 
T Consensus        86 GsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~------------~~~pfD~Iiv~~  153 (215)
T d1jg1a_          86 GTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP------------PKAPYDVIIVTA  153 (215)
T ss_dssp             CCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG------------GGCCEEEEEECS
T ss_pred             cCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc------------ccCcceeEEeec
Confidence            99999999999987 678999999999999999999865  499999999987543            23679988765 


Q ss_pred             CCCcccHHHHHHhccCCCch
Q 017450          225 IPFNISTDVIKQLLPMGDIF  244 (371)
Q Consensus       225 lPy~iss~il~~Ll~~g~~~  244 (371)
                      -...+...++.+|.++|.++
T Consensus       154 a~~~ip~~l~~qL~~gGrLv  173 (215)
T d1jg1a_         154 GAPKIPEPLIEQLKIGGKLI  173 (215)
T ss_dssp             BBSSCCHHHHHTEEEEEEEE
T ss_pred             ccccCCHHHHHhcCCCCEEE
Confidence            33477888999998887664

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-15  Score=135.62  Aligned_cols=146  Identities=14%  Similarity=0.185  Sum_probs=116.9

Q ss_pred             HHHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc---------cccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcC
Q 017450           86 AASACIVCARSQD-DDYHATIKALNSKGRF---PR---------KSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGP  150 (371)
Q Consensus        86 ~r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~---------k~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~  150 (371)
                      .+..||+++.+.+ +...++.++|...++.   +.         -..|| ++..|.+..+|++.+  .+++|++||||||
T Consensus         7 ~~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~~~~-~is~P~~~a~~le~L~~~l~~g~~VLdiG~   85 (224)
T d1i1na_           7 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQA-TISAPHMHAYALELLFDQLHEGAKALDVGS   85 (224)
T ss_dssp             SHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETTE-EECCHHHHHHHHHHTTTTSCTTCEEEEETC
T ss_pred             cHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcccCCCCCccccchh-hhhhhHHHHHHHHHHhhccCCCCeEEEecC
Confidence            3688999998776 6788999999876442   11         12355 889999999999998  6789999999999


Q ss_pred             cccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          151 GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       151 G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      |+|++|..|++.   ..+|++||+++++++.|++++..       .++++++.+|+......            ...||+
T Consensus        86 GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~------------~~~fD~  153 (224)
T d1i1na_          86 GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------------EAPYDA  153 (224)
T ss_dssp             TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------------GCCEEE
T ss_pred             CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch------------hhhhhh
Confidence            999999999986   45899999999999999998863       24789999999876432            357999


Q ss_pred             EEec-CCCcccHHHHHHhccCCCch
Q 017450          221 VVAN-IPFNISTDVIKQLLPMGDIF  244 (371)
Q Consensus       221 VVaN-lPy~iss~il~~Ll~~g~~~  244 (371)
                      |+.+ .+..+..+++.+|.++|.++
T Consensus       154 I~~~~~~~~ip~~l~~~LkpGG~LV  178 (224)
T d1i1na_         154 IHVGAAAPVVPQALIDQLKPGGRLI  178 (224)
T ss_dssp             EEECSBBSSCCHHHHHTEEEEEEEE
T ss_pred             hhhhcchhhcCHHHHhhcCCCcEEE
Confidence            8876 34467788888888887663

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=3.1e-15  Score=133.16  Aligned_cols=102  Identities=29%  Similarity=0.413  Sum_probs=87.0

Q ss_pred             CCcccccCcccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-
Q 017450          113 RFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-  187 (371)
Q Consensus       113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-  187 (371)
                      .+|+++++| |.|++.++..|+..+.   ...|++|||+|||+|.++..++..|+ +|+|||+|+.+++.+++|+...+ 
T Consensus        16 ~~~~~~l~q-y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~   94 (201)
T d1wy7a1          16 KNPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG   94 (201)
T ss_dssp             SSCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             CCCCccccc-CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC
Confidence            368899999 9999999988875443   34688999999999999999888875 89999999999999999987665 


Q ss_pred             CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       188 ~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      +.+++.+|+.++               ..+||+||+|+||...
T Consensus        95 ~~~~~~~d~~~~---------------~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          95 KFKVFIGDVSEF---------------NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             SEEEEESCGGGC---------------CCCCSEEEECCCCSSS
T ss_pred             CceEEECchhhh---------------CCcCcEEEEcCccccc
Confidence            788999998765               2569999999999643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.54  E-value=1.7e-14  Score=130.41  Aligned_cols=112  Identities=18%  Similarity=0.219  Sum_probs=96.0

Q ss_pred             CcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccc
Q 017450          120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (371)
Q Consensus       120 GQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~  199 (371)
                      |+ .+..|.+...|++.+.++++++|||||||+|++|..|++.+.+|+++|+++.+++.|++++....|++++++|+...
T Consensus        50 g~-~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          50 GI-NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG  128 (224)
T ss_dssp             TE-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred             CC-ceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhc
Confidence            44 67889999999999999999999999999999999999999999999999999999999988878999999998764


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEec-CCCcccHHHHHHhccCCCch
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIF  244 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaN-lPy~iss~il~~Ll~~g~~~  244 (371)
                      ..            ...+||+|+.+ .+-.+...++.+|.++|.++
T Consensus       129 ~~------------~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV  162 (224)
T d1vbfa_         129 YE------------EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMI  162 (224)
T ss_dssp             CG------------GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEE
T ss_pred             ch------------hhhhHHHHHhhcchhhhhHHHHHhcCCCCEEE
Confidence            32            23679988765 33367788888888887664

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=5.1e-14  Score=126.18  Aligned_cols=145  Identities=15%  Similarity=0.155  Sum_probs=109.8

Q ss_pred             HHHHHhhhcCCCCcHHHHHHHHHhcCCC---ccc----------cc-----Cc--ccCCCHHHHHHHHHHhcCCCCCEEE
Q 017450           87 ASACIVCARSQDDDYHATIKALNSKGRF---PRK----------SL-----GQ--HYMLNSEINDQLAAAAAVQEGDIVL  146 (371)
Q Consensus        87 r~~mv~~~~~~~~~~~~~~~~l~~~~~~---~~k----------~l-----GQ--~fl~~~~v~~~i~~~l~~~~~~~VL  146 (371)
                      |+.+++...+..++. ++.++|.+..+.   +..          .+     |+  .++..|.+++.+++.+.++++++||
T Consensus         2 ~~~l~~~l~~~gi~~-~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~l~~g~~VL   80 (213)
T d1dl5a1           2 REKLFWILKKYGVSD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVL   80 (213)
T ss_dssp             HHHHHHHHHHTTCCH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEE
T ss_pred             HHHHHHHHHHcCCCH-HHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhhccccceEE
Confidence            445666655666653 677777765421   100          00     11  3577899999999999999999999


Q ss_pred             EEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450          147 EIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (371)
Q Consensus       147 EIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V  221 (371)
                      |||||+|++|..|++.   ..+|+++|+++.+++.|+++++..  .|+.++++|+.+....            ..+||+|
T Consensus        81 diG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~------------~~~fD~I  148 (213)
T d1dl5a1          81 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------FSPYDVI  148 (213)
T ss_dssp             EECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------GCCEEEE
T ss_pred             EecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc------------ccchhhh
Confidence            9999999999999985   358999999999999999998765  4899999998875432            3579998


Q ss_pred             EecC-CCcccHHHHHHhccCCCch
Q 017450          222 VANI-PFNISTDVIKQLLPMGDIF  244 (371)
Q Consensus       222 VaNl-Py~iss~il~~Ll~~g~~~  244 (371)
                      +.+. ..++...++..|.++|.++
T Consensus       149 ~~~~~~~~~p~~l~~~LkpGG~lv  172 (213)
T d1dl5a1         149 FVTVGVDEVPETWFTQLKEGGRVI  172 (213)
T ss_dssp             EECSBBSCCCHHHHHHEEEEEEEE
T ss_pred             hhhccHHHhHHHHHHhcCCCcEEE
Confidence            8764 4467788888888877653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=3.3e-14  Score=124.38  Aligned_cols=101  Identities=14%  Similarity=0.181  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~  200 (371)
                      .+..++...++..+.+.++++|||||||+|.++..++..+.+|+|+|+++.+++.|++|++.++   +++++++|+.+..
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            6788999999999999999999999999999999999988899999999999999999987653   8999999998764


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHH
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~  236 (371)
                      .            ....+|.|+.+.+..-..+++..
T Consensus        96 ~------------~~~~~D~v~~~~~~~~~~~~~~~  119 (186)
T d1l3ia_          96 C------------KIPDIDIAVVGGSGGELQEILRI  119 (186)
T ss_dssp             T------------TSCCEEEEEESCCTTCHHHHHHH
T ss_pred             c------------ccCCcCEEEEeCccccchHHHHH
Confidence            3            23679999999887666665543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=6.2e-14  Score=126.59  Aligned_cols=146  Identities=18%  Similarity=0.279  Sum_probs=113.8

Q ss_pred             HHHHHHhhhcCCCC-cHHHHHHHHHhcCCC---ccc---------ccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcC
Q 017450           86 AASACIVCARSQDD-DYHATIKALNSKGRF---PRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGP  150 (371)
Q Consensus        86 ~r~~mv~~~~~~~~-~~~~~~~~l~~~~~~---~~k---------~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~  150 (371)
                      .+..||+++.+..+ ++.++.++|++..+.   |..         ..|| ++..|.+..+|++.+  .++++++||||||
T Consensus        11 ~~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~-~is~P~~~a~~l~~L~~~l~~g~~VLeIGt   89 (223)
T d1r18a_          11 NNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGV-TISAPHMHAFALEYLRDHLKPGARILDVGS   89 (223)
T ss_dssp             SHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESC
T ss_pred             CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCccccCCCCccccCCc-eeehhhhHHHHHHHHhhccCCCCeEEEecC
Confidence            35689997666664 789999999876543   111         2355 788999999999998  7889999999999


Q ss_pred             cccHHHHHHHHh----C----CeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          151 GTGSLTNVLLNA----G----ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       151 G~G~lt~~La~~----~----~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      |+|++|..|++.    |    .+|++||+++++++.+++++..       ..|+.++++|+.+...            +.
T Consensus        90 GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~------------~~  157 (223)
T d1r18a_          90 GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP------------PN  157 (223)
T ss_dssp             TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG------------GG
T ss_pred             CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc------------cc
Confidence            999999999875    2    3899999999999999988642       2489999999987643            23


Q ss_pred             CCeeEEEec-CCCcccHHHHHHhccCCCch
Q 017450          216 SGFAKVVAN-IPFNISTDVIKQLLPMGDIF  244 (371)
Q Consensus       216 ~~~d~VVaN-lPy~iss~il~~Ll~~g~~~  244 (371)
                      .+||+|+.+ -...+...++.+|.++|.++
T Consensus       158 ~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV  187 (223)
T d1r18a_         158 APYNAIHVGAAAPDTPTELINQLASGGRLI  187 (223)
T ss_dssp             CSEEEEEECSCBSSCCHHHHHTEEEEEEEE
T ss_pred             cceeeEEEEeechhchHHHHHhcCCCcEEE
Confidence            679988765 23367788888888877653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=1.9e-13  Score=120.19  Aligned_cols=93  Identities=17%  Similarity=0.357  Sum_probs=79.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.+++.+...++++|||||||+|.++..+++.+.+|+++|+|+.+++.+++++..+    .+++++.+|+.+. +    
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-~----  115 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-V----  115 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-C----
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-h----
Confidence            466788888889999999999999999999998899999999999999999988644    2689999998763 2    


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                              ....||.|++|+||+...+.+.
T Consensus       116 --------~~~~fD~Ii~~~p~~~~~~~~~  137 (194)
T d1dusa_         116 --------KDRKYNKIITNPPIRAGKEVLH  137 (194)
T ss_dssp             --------TTSCEEEEEECCCSTTCHHHHH
T ss_pred             --------ccCCceEEEEcccEEecchhhh
Confidence                    2367999999999988766543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=2.4e-13  Score=122.39  Aligned_cols=89  Identities=12%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhh
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~  204 (371)
                      ++..+.+++.+++++|++|||||||+|.+|..|++.+.+|+|||+++.|++.|+++....  +++.++++|+.++++.  
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~--   79 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP--   79 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC--
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccccc--
Confidence            456778999999999999999999999999999999999999999999999999987653  4899999999998753  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                .++||.|+++.-.
T Consensus        80 ----------~~~fD~v~~~~~l   92 (234)
T d1xxla_          80 ----------DDSFDIITCRYAA   92 (234)
T ss_dssp             ----------TTCEEEEEEESCG
T ss_pred             ----------ccccceeeeecee
Confidence                      3679999987654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.41  E-value=4.1e-13  Score=119.90  Aligned_cols=86  Identities=20%  Similarity=0.276  Sum_probs=74.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +.++++.++++++++|||||||+|.+|..+++.+++|+|+|+++.|++.|++++...  ++++++++|+.++++.     
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~-----   78 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT-----   78 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC-----
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccc-----
Confidence            467888899999999999999999999999999999999999999999999987643  5899999999998753     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                             .+.||+|+++--+
T Consensus        79 -------~~~fD~v~~~~~l   91 (231)
T d1vl5a_          79 -------DERFHIVTCRIAA   91 (231)
T ss_dssp             -------TTCEEEEEEESCG
T ss_pred             -------ccccccccccccc
Confidence                   3679999987544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=4.4e-12  Score=114.48  Aligned_cols=82  Identities=22%  Similarity=0.331  Sum_probs=70.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .+..++......++++|||||||+|.++..|++.+.+|+|||+++.|++.|++++...+ +++++++|+.++++      
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~------  102 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF------  102 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC------
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhccc------
Confidence            45556666677778899999999999999999999999999999999999999987654 89999999999864      


Q ss_pred             HHHhhccCCCeeEEEe
Q 017450          208 LFERRKSSSGFAKVVA  223 (371)
Q Consensus       208 l~~~~~~~~~~d~VVa  223 (371)
                             ++.||.|++
T Consensus       103 -------~~~fD~I~~  111 (251)
T d1wzna1         103 -------KNEFDAVTM  111 (251)
T ss_dssp             -------CSCEEEEEE
T ss_pred             -------ccccchHhh
Confidence                   256998886

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=7.2e-12  Score=113.40  Aligned_cols=90  Identities=13%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~  199 (371)
                      ...+..++.+.+.+.+.+|++|||||||+|.++..+++. +++|+|||+++.|++.++++....+   +++++++|+.++
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            346678888999999999999999999999999999886 7899999999999999999876553   699999999886


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .             ..++||.|++.--
T Consensus        96 ~-------------~~~~fD~v~~~~~  109 (245)
T d1nkva_          96 V-------------ANEKCDVAACVGA  109 (245)
T ss_dssp             C-------------CSSCEEEEEEESC
T ss_pred             c-------------ccCceeEEEEEeh
Confidence            3             2367999997643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=3.3e-12  Score=117.26  Aligned_cols=92  Identities=21%  Similarity=0.340  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      ..++++|||+|||+|.++..+++.|++|+|+|+|+.+++.|++|.+.++ +++++++|+.+..             ..++
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~-------------~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL-------------PFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG-------------GGCC
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccc-------------cccc
Confidence            4588999999999999999999999999999999999999999988665 7788999876531             2367


Q ss_pred             eeEEEecCCCcccHHHH----HHhccCCCc
Q 017450          218 FAKVVANIPFNISTDVI----KQLLPMGDI  243 (371)
Q Consensus       218 ~d~VVaNlPy~iss~il----~~Ll~~g~~  243 (371)
                      ||.|++|+.++....++    ..|.++|.+
T Consensus       185 fD~V~ani~~~~l~~l~~~~~~~LkpGG~l  214 (254)
T d2nxca1         185 FDLLVANLYAELHAALAPRYREALVPGGRA  214 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cchhhhccccccHHHHHHHHHHhcCCCcEE
Confidence            99999998765544332    334445544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=3.5e-12  Score=117.62  Aligned_cols=110  Identities=20%  Similarity=0.337  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC-----CCeEEEEcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQED  195 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~-----~~v~vi~gD  195 (371)
                      ++-+..+..|+..+++.+|++|||+|||+|++|..||..   ..+|+++|+++++++.|+++++..     .+++++++|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            556778899999999999999999999999999999986   359999999999999999987642     489999999


Q ss_pred             cccchhhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHhccCCCchh
Q 017450          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIFS  245 (371)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~Ll~~g~~~~  245 (371)
                      +.+..+            +...+|.|+.++|-  .....+...|.++|.+..
T Consensus       159 ~~~~~~------------~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         159 LADSEL------------PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             GGGCCC------------CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEE
T ss_pred             cccccc------------cCCCcceEEEecCCHHHHHHHHHhccCCCCEEEE
Confidence            987654            24679999999874  455566666777766543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.27  E-value=3e-12  Score=117.17  Aligned_cols=105  Identities=18%  Similarity=0.304  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (371)
Q Consensus       127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~  200 (371)
                      |.-+..|+..+++++|++|||+|||+|++|..|++.   ..+|+++|+++++++.|+++++..   .++++.++|+.+..
T Consensus        71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            344566889999999999999999999999999985   358999999999999999998764   48999999998752


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHhccCCCch
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~Ll~~g~~~  244 (371)
                                   ....||.|+.|+|-  .....+...|.++|.++
T Consensus       151 -------------~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv  183 (250)
T d1yb2a1         151 -------------SDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT  183 (250)
T ss_dssp             -------------CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEE
T ss_pred             -------------ccceeeeeeecCCchHHHHHHHHHhcCCCceEE
Confidence                         23679999999874  44556666666766554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.26  E-value=9.2e-12  Score=105.28  Aligned_cols=86  Identities=15%  Similarity=0.281  Sum_probs=70.6

Q ss_pred             HHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhh
Q 017450          132 QLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       132 ~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~  206 (371)
                      .+...+.. -.|.+|||+|||+|.++...+.+|+ +|++||.|+.+++.+++++...+   +++++++|+.+...     
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~-----   78 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID-----   78 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH-----
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc-----
Confidence            44455543 3688999999999999999888875 89999999999999999998653   69999999987421     


Q ss_pred             hHHHhhccCCCeeEEEecCCCc
Q 017450          207 SLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            ....+||+|+.||||.
T Consensus        79 ------~~~~~fDiIf~DPPy~   94 (152)
T d2esra1          79 ------CLTGRFDLVFLDPPYA   94 (152)
T ss_dssp             ------HBCSCEEEEEECCSSH
T ss_pred             ------ccccccceeEechhhc
Confidence                  1346799999999995

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.24  E-value=1.4e-11  Score=106.23  Aligned_cols=91  Identities=16%  Similarity=0.115  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--------------CCeE
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------------DQLK  190 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--------------~~v~  190 (371)
                      +++++.+ ....+.+.++.+|||||||+|..+..||++|.+|+|||+++.|++.|+++....              .+++
T Consensus         5 ~~~~~~~-~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           5 VNKDLQQ-YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             STHHHHH-HHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHH-HHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            3455444 455678889999999999999999999999999999999999999999987532              2467


Q ss_pred             EEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       191 vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ++.+|+.+++...           ...+|.|++..-+
T Consensus        84 ~~~~d~~~l~~~~-----------~~~~D~i~~~~~l  109 (201)
T d1pjza_          84 IWCGDFFALTARD-----------IGHCAAFYDRAAM  109 (201)
T ss_dssp             EEEECCSSSTHHH-----------HHSEEEEEEESCG
T ss_pred             eeccccccccccc-----------ccceeEEEEEeee
Confidence            8889988876432           2468988875443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.23  E-value=1.6e-11  Score=113.45  Aligned_cols=87  Identities=16%  Similarity=0.245  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~  204 (371)
                      +++.+.....+.++.+|||||||+|.++..|++. +++|+|||+++.+++.|+++....   ++++++++|+.++++.  
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~--  132 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--  132 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccc--
Confidence            4556666667889999999999999999999986 889999999999999999987643   3899999999998753  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                                .+.||+|+++--+
T Consensus       133 ----------~~sfD~V~~~~~l  145 (282)
T d2o57a1         133 ----------DNSYDFIWSQDAF  145 (282)
T ss_dssp             ----------TTCEEEEEEESCG
T ss_pred             ----------ccccchhhccchh
Confidence                      4679999986543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=1.4e-11  Score=108.75  Aligned_cols=76  Identities=20%  Similarity=0.275  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .++++|||||||+|.++..+++.+.+|+|+|+++.|++.|+++.... .++..+.+|+.++++.            ...|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~------------~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE------------DKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC------------TTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccccccccccc------------CcCc
Confidence            46789999999999999999999999999999999999999987654 3788999999998653            3679


Q ss_pred             eEEEecCCC
Q 017450          219 AKVVANIPF  227 (371)
Q Consensus       219 d~VVaNlPy  227 (371)
                      |+|+++--+
T Consensus       104 D~I~~~~~l  112 (226)
T d1ve3a1         104 DYVIFIDSI  112 (226)
T ss_dssp             EEEEEESCG
T ss_pred             eEEEEecch
Confidence            999886443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.3e-11  Score=111.52  Aligned_cols=90  Identities=22%  Similarity=0.425  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~  204 (371)
                      +++..+.... ..+.+|||+|||+|.++..++..  ..+|+|+|+++.+++.|++|...++  +++++++|..+..    
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~----  171 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL----  171 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG----
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc----
Confidence            3444444333 34568999999999999999886  5699999999999999999987654  7999999987631    


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNISTD  232 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~iss~  232 (371)
                               ...+||+||+||||--..+
T Consensus       172 ---------~~~~fDlIvsNPPYi~~~~  190 (274)
T d2b3ta1         172 ---------AGQQFAMIVSNPPYIDEQD  190 (274)
T ss_dssp             ---------TTCCEEEEEECCCCBCTTC
T ss_pred             ---------CCCceeEEEecchhhhhhh
Confidence                     2357999999999965543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.19  E-value=4.3e-11  Score=104.77  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHh
Q 017450          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      +..+....+.+|||||||+|..+..|+++|.+|+|||+++.+++.++++....  +++++..+|+.+..+          
T Consensus        23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~----------   92 (198)
T d2i6ga1          23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF----------   92 (198)
T ss_dssp             HHHHTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC----------
T ss_pred             HHHcccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc----------
Confidence            33444445569999999999999999999999999999999999999887654  478999999988753          


Q ss_pred             hccCCCeeEEEecCCCcc
Q 017450          212 RKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       212 ~~~~~~~d~VVaNlPy~i  229 (371)
                         .+.||.|+++..++.
T Consensus        93 ---~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          93 ---DGEYDFILSTVVMMF  107 (198)
T ss_dssp             ---CCCEEEEEEESCGGG
T ss_pred             ---cccccEEEEeeeeec
Confidence               367999999866543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=3.4e-11  Score=103.84  Aligned_cols=95  Identities=15%  Similarity=0.175  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhh
Q 017450          127 SEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       127 ~~v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~  203 (371)
                      ..+.+.+.+.+.  ...+.+|||+|||+|.++...+.+|++|++||.|+.+++.+++|++.++ +.++...|+.......
T Consensus        25 ~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~  104 (171)
T d1ws6a1          25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA  104 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccc
Confidence            334444444433  3578899999999999999999999999999999999999999987654 3456655554432110


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                            .  ....+||+|+.||||..
T Consensus       105 ------~--~~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1         105 ------K--AQGERFTVAFMAPPYAM  122 (171)
T ss_dssp             ------H--HTTCCEEEEEECCCTTS
T ss_pred             ------c--ccCCccceeEEcccccc
Confidence                  0  13467999999999964

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.18  E-value=2.2e-11  Score=110.00  Aligned_cols=70  Identities=23%  Similarity=0.287  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      ++++|||||||+|.++..|++.|.+|+|||.|+.|++.|+++....+ +++++++|+.++++             .++||
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-------------~~~fD  103 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-------------NRKFD  103 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-------------SCCEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-------------ccccc
Confidence            46799999999999999999999999999999999999999886544 89999999988753             35799


Q ss_pred             EEEe
Q 017450          220 KVVA  223 (371)
Q Consensus       220 ~VVa  223 (371)
                      .|++
T Consensus       104 ~i~~  107 (246)
T d1y8ca_         104 LITC  107 (246)
T ss_dssp             EEEE
T ss_pred             ccce
Confidence            9886

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=4e-11  Score=110.57  Aligned_cols=114  Identities=18%  Similarity=0.298  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~  197 (371)
                      ++-|..+..|+..+++.+|++|||+|||+|++|..||+.   +++|+++|+++++++.|+++++..+   ++.+..+|+.
T Consensus        86 iiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~  165 (266)
T d1o54a_          86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  165 (266)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence            555678899999999999999999999999999999986   3699999999999999999998654   7888888865


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCC--CcccHHHHHHhccCCCchhHHHHH
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVVLL  250 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlP--y~iss~il~~Ll~~g~~~~~~~lm  250 (371)
                      ..             .....+|.|+.++|  +.....+...|.++|.++..+..+
T Consensus       166 ~~-------------~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         166 EG-------------FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             GC-------------CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             cc-------------ccccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence            42             12356899998876  455567777777777665333333

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4e-11  Score=113.52  Aligned_cols=111  Identities=18%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhcc-------------CC
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-------------ID  187 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~-------------~~  187 (371)
                      ++=|.-+..|+..+++.+|++|||+|||+|++|..||..   ..+|+++|+++++++.|+++++.             .+
T Consensus        81 iiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~  160 (324)
T d2b25a1          81 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  160 (324)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            455677889999999999999999999999999999986   45899999999999999998763             13


Q ss_pred             CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHhccCCCch
Q 017450          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (371)
Q Consensus       188 ~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~Ll~~g~~~  244 (371)
                      |++++++|+.+....          .....+|.||.++|-  .....+...|.++|.+.
T Consensus       161 nv~~~~~di~~~~~~----------~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv  209 (324)
T d2b25a1         161 NVDFIHKDISGATED----------IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA  209 (324)
T ss_dssp             CEEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEEE
T ss_pred             ceeEEecchhhcccc----------cCCCCcceEeecCcCHHHHHHHHHHhccCCCEEE
Confidence            899999999875432          123569999998764  55566666666766553

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.2e-10  Score=101.27  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~  203 (371)
                      .+.+.+...+.. ..+.+|||++||+|.++...+.+|+ +|++||.|+..++.+++|+...  .+++++.+|+.++..  
T Consensus        29 ~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~--  106 (183)
T d2fpoa1          29 RVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA--  106 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS--
T ss_pred             HHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccc--
Confidence            333444444321 2577999999999999999999986 7999999999999999998754  388999999887532  


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcc--cHHHHHHhcc
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLP  239 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~i--ss~il~~Ll~  239 (371)
                               .....||+|+.+|||.-  ...++..+..
T Consensus       107 ---------~~~~~fDlIf~DPPY~~~~~~~~l~~l~~  135 (183)
T d2fpoa1         107 ---------QKGTPHNIVFVDPPFRRGLLEETINLLED  135 (183)
T ss_dssp             ---------SCCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred             ---------ccccccCEEEEcCccccchHHHHHHHHHH
Confidence                     13467999999999964  2344444443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.09  E-value=2.9e-10  Score=98.81  Aligned_cols=108  Identities=16%  Similarity=0.328  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          124 MLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      .+...+.+.+...+.. ..+.+|||++||+|.++...+.+|+ +|++||.|+.++..+++|+...   .+++++++|+.+
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~  102 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  102 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh
Confidence            3445566667776653 4789999999999999999999986 7999999999999999998643   379999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCcc--cHHHHHHhcc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLP  239 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i--ss~il~~Ll~  239 (371)
                      +-..     +.   ....+||+|+.+|||..  ..+++..+..
T Consensus       103 ~l~~-----~~---~~~~~fDlIflDPPY~~~~~~~~l~~i~~  137 (182)
T d2fhpa1         103 ALEQ-----FY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLE  137 (182)
T ss_dssp             HHHH-----HH---HTTCCEEEEEECCCGGGCCHHHHHHHHHH
T ss_pred             hhhh-----hc---ccCCCcceEEechhhhhhHHHHHHHHHHH
Confidence            5211     10   13457999999999953  2455555443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.5e-10  Score=102.20  Aligned_cols=89  Identities=9%  Similarity=-0.003  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-------------------
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-------------------  185 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-------------------  185 (371)
                      .++.+.+.+.+.+...++.+|||+|||+|..+..|++.|.+|+|||+++.+++.++++...                   
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            4677778888888888899999999999999999999999999999999999999887542                   


Q ss_pred             CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       186 ~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      ..+++++++|+.+++..           ....+|.|+..
T Consensus       109 ~~~v~~~~~d~~~l~~~-----------~~~~fd~i~~~  136 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRT-----------NIGKFDMIWDR  136 (229)
T ss_dssp             TSSEEEEESCGGGGGGS-----------CCCCEEEEEES
T ss_pred             CCcEEEEEcchhhcccc-----------ccCceeEEEEE
Confidence            13788999999887642           34678988854

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.08  E-value=2.4e-10  Score=101.81  Aligned_cols=74  Identities=22%  Similarity=0.331  Sum_probs=60.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..++.+|||+|||+|.+|..|++.    +.+|+|||+++.|++.|+++....+   ++++..+|+.+.+.          
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~----------  106 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------  106 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC----------
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc----------
Confidence            357789999999999999999974    6699999999999999999886543   67888888887642          


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                          +.+|.++++.-
T Consensus       107 ----~~~d~i~~~~~  117 (225)
T d1im8a_         107 ----KNASMVILNFT  117 (225)
T ss_dssp             ----CSEEEEEEESC
T ss_pred             ----ccceeeEEeee
Confidence                45788887644

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.08  E-value=2.9e-10  Score=103.75  Aligned_cols=92  Identities=18%  Similarity=0.236  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      .....+++.+...++.+|||+|||+|.+|..|+.. +.+|++||+++.|++.|++++...++++++++|+.++++     
T Consensus        80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~-----  154 (254)
T d1xtpa_          80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL-----  154 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC-----
T ss_pred             HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEcccccccc-----
Confidence            34456667777778889999999999999998876 568999999999999999998776788999999998764     


Q ss_pred             hHHHhhccCCCeeEEEecCCC-cccH
Q 017450          207 SLFERRKSSSGFAKVVANIPF-NIST  231 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy-~iss  231 (371)
                             ....||+|+++... +++.
T Consensus       155 -------~~~~fD~I~~~~vl~hl~d  173 (254)
T d1xtpa_         155 -------PPNTYDLIVIQWTAIYLTD  173 (254)
T ss_dssp             -------CSSCEEEEEEESCGGGSCH
T ss_pred             -------CCCccceEEeeccccccch
Confidence                   23679999987654 3443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=2.1e-10  Score=106.34  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      +.++.+++.+.+++|++|||||||+|.++..+++. |++|+||++++.+++.++++....+   ++.+...|..+.    
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----  114 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----  114 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----
Confidence            34677888899999999999999999999999986 8999999999999999999987654   567777776654    


Q ss_pred             hhhhHHHhhccCCCeeEEEec
Q 017450          204 HMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaN  224 (371)
                                 ++.||.|++-
T Consensus       115 -----------~~~fD~i~si  124 (280)
T d2fk8a1         115 -----------AEPVDRIVSI  124 (280)
T ss_dssp             -----------CCCCSEEEEE
T ss_pred             -----------ccchhhhhHh
Confidence                       2568988864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.1e-10  Score=107.14  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~  206 (371)
                      .++...  ..+|++|||+|||+|.++..++..+ ++|+|+|+|+.+++.+++|+..++   +++++++|+.++.      
T Consensus        99 ~ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~------  170 (260)
T d2frna1          99 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------  170 (260)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------
T ss_pred             HHHHhh--cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc------
Confidence            344444  4589999999999999999999886 599999999999999999987653   6999999998863      


Q ss_pred             hHHHhhccCCCeeEEEecCCCc
Q 017450          207 SLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                             ....+|.|++|+|..
T Consensus       171 -------~~~~~D~Ii~~~p~~  185 (260)
T d2frna1         171 -------GENIADRILMGYVVR  185 (260)
T ss_dssp             -------CCSCEEEEEECCCSS
T ss_pred             -------cCCCCCEEEECCCCc
Confidence                   236799999999864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.08  E-value=3.2e-10  Score=100.69  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             hcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      +.+++|++|||+|||+|+.+..+++.  ..+|+|||+++.|++.|+++.+..+|+.++.+|+........         .
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~---------~  122 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSG---------I  122 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTT---------T
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcccccc---------c
Confidence            56789999999999999999999986  358999999999999999998877899999999987654321         2


Q ss_pred             CCCeeEEEecCCCcc
Q 017450          215 SSGFAKVVANIPFNI  229 (371)
Q Consensus       215 ~~~~d~VVaNlPy~i  229 (371)
                      ...+|+|+.+++...
T Consensus       123 ~~~vd~v~~~~~~~~  137 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKN  137 (209)
T ss_dssp             CCCEEEEEECCCSTT
T ss_pred             cceEEEEEecccChh
Confidence            245777888877544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-10  Score=104.13  Aligned_cols=77  Identities=10%  Similarity=0.085  Sum_probs=63.5

Q ss_pred             cCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          138 AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ...++.+|||||||+|.++..++.. +.+|+|||+++.|++.|++++...  ++++++++|+.++++            .
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~------------~  124 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP------------E  124 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC------------C
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccc------------c
Confidence            3456789999999999999988765 568999999999999999998754  378999999999864            2


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      .+.||+|+++--
T Consensus       125 ~~~fD~I~~~~~  136 (222)
T d2ex4a1         125 PDSYDVIWIQWV  136 (222)
T ss_dssp             SSCEEEEEEESC
T ss_pred             cccccccccccc
Confidence            467999987644

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=2.6e-10  Score=101.71  Aligned_cols=69  Identities=25%  Similarity=0.352  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .++.+|||||||+|.++..|++.|.+|+|||+++.|++.|+++..    ..++.+|+.++++.            .+.||
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~l~~~------------~~~fD  104 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KNVVEAKAEDLPFP------------SGAFE  104 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SCEEECCTTSCCSC------------TTCEE
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc----cccccccccccccc------------ccccc
Confidence            367799999999999999999999999999999999999998753    23678999988653            36799


Q ss_pred             EEEec
Q 017450          220 KVVAN  224 (371)
Q Consensus       220 ~VVaN  224 (371)
                      +|++.
T Consensus       105 ~ii~~  109 (246)
T d2avna1         105 AVLAL  109 (246)
T ss_dssp             EEEEC
T ss_pred             ceeee
Confidence            98864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=2.8e-10  Score=105.85  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~  203 (371)
                      ..++.+++.+.+.+|++|||||||.|.++..+++. |++|+||.+++..++.++++....   +++++..+|+.+++   
T Consensus        49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---  125 (285)
T d1kpga_          49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---  125 (285)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence            45678888999999999999999999999998886 899999999999999999987654   38899999987652   


Q ss_pred             hhhhHHHhhccCCCeeEEEec
Q 017450          204 HMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaN  224 (371)
                                  ++||.|++-
T Consensus       126 ------------~~fD~i~si  134 (285)
T d1kpga_         126 ------------EPVDRIVSI  134 (285)
T ss_dssp             ------------CCCSEEEEE
T ss_pred             ------------ccccceeee
Confidence                        568988863

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.4e-10  Score=103.32  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=63.7

Q ss_pred             CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ..+|||||||+|..+..|+..  +.+++|+|+|+++++.|++|.+.++   ++.+++.+....-+...    ..  ...+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~----~~--~~~~  135 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL----KE--ESEI  135 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTS----TT--CCSC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhh----hh--cccC
Confidence            358999999999999999986  7899999999999999999998654   68888876544322110    00  1235


Q ss_pred             CeeEEEecCCCcccH
Q 017450          217 GFAKVVANIPFNIST  231 (371)
Q Consensus       217 ~~d~VVaNlPy~iss  231 (371)
                      .||.||+||||.-+.
T Consensus       136 ~fD~ivsNPPY~~~~  150 (250)
T d2h00a1         136 IYDFCMCNPPFFANQ  150 (250)
T ss_dssp             CBSEEEECCCCC---
T ss_pred             ceeEEEecCcccccc
Confidence            799999999998654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.06  E-value=2.6e-10  Score=105.44  Aligned_cols=89  Identities=17%  Similarity=0.288  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccch
Q 017450          126 NSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (371)
Q Consensus       126 ~~~v~~~i~~~l-~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~  200 (371)
                      +.+.+..+++.+ .+.++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.|++++...+ +++++++|+.+++
T Consensus        11 n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          11 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   90 (281)
T ss_dssp             CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             hHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence            556677777655 4567889999999999999999874   5689999999999999999988665 7899999998875


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      +             .+.||+|+++--+
T Consensus        91 ~-------------~~~fD~v~~~~~l  104 (281)
T d2gh1a1          91 L-------------NDKYDIAICHAFL  104 (281)
T ss_dssp             C-------------SSCEEEEEEESCG
T ss_pred             c-------------cCCceEEEEehhh
Confidence            4             2469999987544

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=1e-09  Score=103.28  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=77.7

Q ss_pred             cccccCcccCCCHHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHh----C---CeEEEEeCCHHHHHHHHHHh
Q 017450          115 PRKSLGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA----G---ATVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       115 ~~k~lGQ~fl~~~~v~~~i~~~l----~~~~~~~VLEIG~G~G~lt~~La~~----~---~~V~aIE~d~~~i~~a~~~~  183 (371)
                      .....|+ +.+++.++..|+..+    ...++.+|||.|||+|.+...+.+.    +   .+++|+|+|+.++..|+.+.
T Consensus        88 ~~~~~g~-~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~  166 (328)
T d2f8la1          88 HGIQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA  166 (328)
T ss_dssp             SSCCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH
T ss_pred             hcccCCe-EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHH
Confidence            3445567 779998888777554    4667789999999999998887653    1   27999999999999998886


Q ss_pred             ccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          184 ASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       184 ~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ... .+..+.++|.....             ...+||+||+||||..
T Consensus       167 ~~~~~~~~~~~~d~~~~~-------------~~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         167 DLQRQKMTLLHQDGLANL-------------LVDPVDVVISDLPVGY  200 (328)
T ss_dssp             HHHTCCCEEEESCTTSCC-------------CCCCEEEEEEECCCSE
T ss_pred             HHhhhhhhhhcccccccc-------------ccccccccccCCCCCC
Confidence            533 36778888876643             2367999999999954

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3.3e-10  Score=104.15  Aligned_cols=90  Identities=14%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ..++.+|||||||+|.++..+++.  +.+++|||+++.|++.|+++.   ++++++.+|+.++++.            ..
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~~~------------~~  146 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPFS------------DT  146 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCSBC------------TT
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhccCC------------CC
Confidence            446779999999999999999997  468999999999999998874   4899999999998763            36


Q ss_pred             CeeEEEecCCCcccHHHHHHhccCCCc
Q 017450          217 GFAKVVANIPFNISTDVIKQLLPMGDI  243 (371)
Q Consensus       217 ~~d~VVaNlPy~iss~il~~Ll~~g~~  243 (371)
                      .+|.|+++.......++.+.|.++|.+
T Consensus       147 sfD~v~~~~~~~~~~e~~rvLkpgG~l  173 (268)
T d1p91a_         147 SMDAIIRIYAPCKAEELARVVKPGGWV  173 (268)
T ss_dssp             CEEEEEEESCCCCHHHHHHHEEEEEEE
T ss_pred             CEEEEeecCCHHHHHHHHHHhCCCcEE
Confidence            799999875434455666655565544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.05  E-value=2e-10  Score=102.50  Aligned_cols=72  Identities=14%  Similarity=0.262  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      ..+++|||||||+|.++..+++.|.+|+|||+++++++.|+++...  +++++++|+.+..+             +..||
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~~~~~~~-------------~~~fD   83 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQL-------------PRRYD   83 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCCC-------------SSCEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccc--cccccccccccccc-------------ccccc
Confidence            3577899999999999999999999999999999999999988653  79999999987643             35799


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      +|++.--
T Consensus        84 ~I~~~~v   90 (225)
T d2p7ia1          84 NIVLTHV   90 (225)
T ss_dssp             EEEEESC
T ss_pred             cccccce
Confidence            9987643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=4.4e-10  Score=104.77  Aligned_cols=82  Identities=15%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~  203 (371)
                      ..++.+++.+.+.+|++|||||||+|.++..+++. |++|+||+++++.++.++++....+   .+++...|....    
T Consensus        48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~----  123 (291)
T d1kpia_          48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----  123 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc----
Confidence            45778999999999999999999999999999875 9999999999999999999887543   677777776432    


Q ss_pred             hhhhHHHhhccCCCeeEEEec
Q 017450          204 HMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaN  224 (371)
                                 .++||.|++.
T Consensus       124 -----------~~~fD~i~si  133 (291)
T d1kpia_         124 -----------DEPVDRIVSL  133 (291)
T ss_dssp             -----------CCCCSEEEEE
T ss_pred             -----------ccccceEeec
Confidence                       3679999974

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.04  E-value=2.1e-10  Score=112.35  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=88.1

Q ss_pred             HHHHHHHH-hcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---------------CCe
Q 017450          102 HATIKALN-SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GAT  165 (371)
Q Consensus       102 ~~~~~~l~-~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---------------~~~  165 (371)
                      ++..+.+- +.....++..|| |.|++.+++.|++.+.+.++.+|+|..||+|.+...+.+.               ...
T Consensus       123 g~~yE~ll~~~~~~~~k~~G~-f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~  201 (425)
T d2okca1         123 GAIYESILEKNGQDKKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA  201 (425)
T ss_dssp             HHHHHHHHHHHHTCTTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhccchh-hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhh
Confidence            44444333 223456778899 8899999999999999988999999999999998777653               125


Q ss_pred             EEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          166 VLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       166 V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ++|+|+++.++..|+-++.-.    .+..+..+|.++.+             ....||+|++||||..
T Consensus       202 l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-------------~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         202 LHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-------------PSTLVDVILANPPFGT  256 (425)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-------------CSSCEEEEEECCCSSC
T ss_pred             hhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-------------cccccceEEecCCCCC
Confidence            999999999999998876422    24567888887642             2367999999999954

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.02  E-value=5.2e-10  Score=101.46  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..++++|||||||+|..+..+++.+ ++|+|||+|+.|++.|+++....+   ++.++++|+...++.           .
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-----------~   90 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----------L   90 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----------C
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-----------c
Confidence            4578899999999999999999886 489999999999999999876543   789999999765432           2


Q ss_pred             CCCeeEEEecCC
Q 017450          215 SSGFAKVVANIP  226 (371)
Q Consensus       215 ~~~~d~VVaNlP  226 (371)
                      ...||+|+++.-
T Consensus        91 ~~~fD~V~~~~~  102 (252)
T d1ri5a_          91 GKEFDVISSQFS  102 (252)
T ss_dssp             SSCEEEEEEESC
T ss_pred             cccceEEEEcce
Confidence            357999998754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=5.7e-10  Score=102.87  Aligned_cols=91  Identities=16%  Similarity=0.224  Sum_probs=71.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~  204 (371)
                      +++.+++.....+..+|||+|||+|..+..+++. ..+|+|+|+++.+++.|++|...++   ++.+..+|+.+....  
T Consensus        98 lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~--  175 (271)
T d1nv8a_          98 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE--  175 (271)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG--
T ss_pred             hhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc--
Confidence            3444454444445679999999999999998876 5699999999999999999987654   678889998775321  


Q ss_pred             hhhHHHhhccCCCeeEEEecCCCccc
Q 017450          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                               ..+.||+||+||||--.
T Consensus       176 ---------~~~~fDlIVsNPPYI~~  192 (271)
T d1nv8a_         176 ---------KFASIEMILSNPPYVKS  192 (271)
T ss_dssp             ---------GTTTCCEEEECCCCBCG
T ss_pred             ---------ccCcccEEEEcccccCc
Confidence                     23679999999998643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1e-09  Score=103.75  Aligned_cols=79  Identities=14%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhcc-----------CCCeEE
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-----------IDQLKV  191 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~-----------~~~v~v  191 (371)
                      +....+..|++.+.+.++++|||||||+|.++..++.. + .+++|||+++.+++.|+++...           .+++++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            56788999999999999999999999999999999876 4 4799999999999999876542           348999


Q ss_pred             EEcccccchhhh
Q 017450          192 LQEDFVKCHIRS  203 (371)
Q Consensus       192 i~gD~~~~~~~~  203 (371)
                      ++||+.+.++.+
T Consensus       215 ~~gd~~~~~~~~  226 (328)
T d1nw3a_         215 ERGDFLSEEWRE  226 (328)
T ss_dssp             EECCTTSHHHHH
T ss_pred             EECccccccccc
Confidence            999999987654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.1e-09  Score=104.19  Aligned_cols=107  Identities=20%  Similarity=0.228  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhh
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~  203 (371)
                      .+.+++.+.+.+...++++|||+.||+|.+|..|++.+.+|+|||.++.+++.|+++...++  |++++.+|+.+.-...
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~  276 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ  276 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence            34556666777788889999999999999999999999999999999999999999987654  8999999987643211


Q ss_pred             hhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccC
Q 017450          204 HMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM  240 (371)
Q Consensus       204 ~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~  240 (371)
                      .        .....+|+||.|||..-..+.+..+...
T Consensus       277 ~--------~~~~~~d~vilDPPR~G~~~~~~~l~~~  305 (358)
T d1uwva2         277 P--------WAKNGFDKVLLDPARAGAAGVMQQIIKL  305 (358)
T ss_dssp             G--------GGTTCCSEEEECCCTTCCHHHHHHHHHH
T ss_pred             h--------hhhccCceEEeCCCCccHHHHHHHHHHc
Confidence            0        1235689999999998888888777653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=100.39  Aligned_cols=86  Identities=17%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      +.|.......++++|||||||+|.++..+|+.|+ +|+|+|.++.+...++.....  ..+++++++|+.++..      
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~------   98 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL------   98 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC------
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC------
Confidence            3455555666889999999999999999999975 899999999887544433222  2489999999998764      


Q ss_pred             HHHhhccCCCeeEEEecCCCc
Q 017450          208 LFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy~  228 (371)
                            ...++|+|++++..+
T Consensus        99 ------~~~~~D~Ivse~~~~  113 (311)
T d2fyta1          99 ------PVEKVDVIISEWMGY  113 (311)
T ss_dssp             ------SCSCEEEEEECCCBT
T ss_pred             ------ccccceEEEEeeeee
Confidence                  236799999986653

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=3.7e-09  Score=94.94  Aligned_cols=85  Identities=11%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .+.+.+|++|||+|||+|.+|..|++.   ..+|+|+|+++.|++.++++.+..+++..+.+|+.......         
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~---------  138 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR---------  138 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT---------
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc---------
Confidence            345789999999999999999999996   36899999999999999999887788999999987643211         


Q ss_pred             ccCCCeeEEEecCCCcc
Q 017450          213 KSSSGFAKVVANIPFNI  229 (371)
Q Consensus       213 ~~~~~~d~VVaNlPy~i  229 (371)
                      ...+.+|.|+.+++..-
T Consensus       139 ~~~~~vD~i~~d~~~~~  155 (227)
T d1g8aa_         139 ALVPKVDVIFEDVAQPT  155 (227)
T ss_dssp             TTCCCEEEEEECCCSTT
T ss_pred             ccccceEEEEEEccccc
Confidence            12356899999988643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.7e-09  Score=96.84  Aligned_cols=86  Identities=20%  Similarity=0.199  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~  205 (371)
                      .+.+.+...+. .+|++|||||||+|.++..+++.+ .+|++||+|+.+++.|+++....+ ++.++.+|+......   
T Consensus        41 ~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---  116 (229)
T d1zx0a1          41 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT---  116 (229)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG---
T ss_pred             HHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccc---
Confidence            33444444444 467899999999999999999874 689999999999999999987654 678888888765332   


Q ss_pred             hhHHHhhccCCCeeEEEec
Q 017450          206 LSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaN  224 (371)
                             ....+||.|+.+
T Consensus       117 -------~~~~~fD~i~fD  128 (229)
T d1zx0a1         117 -------LPDGHFDGILYD  128 (229)
T ss_dssp             -------SCTTCEEEEEEC
T ss_pred             -------cccccccceeec
Confidence                   134678888754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=2e-09  Score=99.54  Aligned_cols=86  Identities=15%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC------CeEEEEcccccchhh
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID------QLKVLQEDFVKCHIR  202 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~------~v~vi~gD~~~~~~~  202 (371)
                      ..+.+...+...++.+|||||||+|.++..|++.|.+|+|||+++.|++.|+++.....      ...+..+|++..+..
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  123 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence            34555666666677899999999999999999999999999999999999998875432      345556666655421


Q ss_pred             hhhhhHHHhhccCCCeeEEEe
Q 017450          203 SHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       203 ~~~~~l~~~~~~~~~~d~VVa  223 (371)
                      .         ...+.||.|++
T Consensus       124 ~---------~~~~~fd~v~~  135 (292)
T d1xvaa_         124 V---------PAGDGFDAVIC  135 (292)
T ss_dssp             S---------CCTTCEEEEEE
T ss_pred             c---------CCCCCceEEEE
Confidence            1         12356888875

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=2.4e-09  Score=101.01  Aligned_cols=98  Identities=24%  Similarity=0.250  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~  199 (371)
                      ..|..-....+.. ...++++|||+|||+|..+..++..|+ +|+++|+++.+++.+++|+..++   +++++++|+.+.
T Consensus       129 flDqr~~r~~~~~-~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~  207 (324)
T d2as0a2         129 FLDQRENRLALEK-WVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE  207 (324)
T ss_dssp             CSTTHHHHHHHGG-GCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             ccchhhHHHHHHh-hcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh
Confidence            3344433333332 235789999999999999999998875 89999999999999999997664   789999999875


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      ...     +.   ....+||+|+.|+|+...
T Consensus       208 ~~~-----~~---~~~~~fD~Vi~DpP~~~~  230 (324)
T d2as0a2         208 MEK-----LQ---KKGEKFDIVVLDPPAFVQ  230 (324)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCCSCS
T ss_pred             hHH-----HH---hccCCCCchhcCCccccC
Confidence            321     11   134689999999998653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.90  E-value=5.9e-09  Score=93.69  Aligned_cols=65  Identities=15%  Similarity=0.225  Sum_probs=57.9

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      .+.+.+|++|||+|||+|+.+..+++.+  ..|+|||+++.|++.|+++....+++..+.+|+....
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ  135 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc
Confidence            3457899999999999999999999974  5899999999999999999887789999999988754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.3e-09  Score=93.35  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=78.7

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+.+.....+...+...++++|||||||+|++|.++++.   +.+|+++|.|++..+.|++++...+   +++++.||+
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            5678888888888887788899999999999999999985   5799999999999999999997553   799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      .+.....     ... ...++||.|+.+--
T Consensus       121 ~e~l~~~-----~~~-~~~~~fD~ifiD~d  144 (219)
T d2avda1         121 LETLDEL-----LAA-GEAGTFDVAVVDAD  144 (219)
T ss_dssp             HHHHHHH-----HHT-TCTTCEEEEEECSC
T ss_pred             hhcchhh-----hhh-cccCCccEEEEeCC
Confidence            8753221     110 12467999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=1.5e-09  Score=102.25  Aligned_cols=98  Identities=18%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (371)
Q Consensus       122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~  199 (371)
                      .+..|......+++   ..+|++|||++||+|.++..++..+.+|+++|+|+.+++.+++++..++  +++++++|+.++
T Consensus       129 G~flDqr~~r~~~~---~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~  205 (318)
T d1wxxa2         129 GAYLDQRENRLYME---RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL  205 (318)
T ss_dssp             CCCGGGHHHHHHGG---GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred             ccchhhhhhHHHHH---HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHH
Confidence            34555555544433   3368999999999999999998777899999999999999999988664  899999999875


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is  230 (371)
                      .-.     +.   .....||+|+.|+|....
T Consensus       206 ~~~-----~~---~~~~~fD~Vi~DpP~~~~  228 (318)
T d1wxxa2         206 LRR-----LE---KEGERFDLVVLDPPAFAK  228 (318)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCCSCC
T ss_pred             hhh-----hH---hhhcCCCEEEEcCCcccc
Confidence            321     11   134689999999997543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=2.7e-09  Score=100.67  Aligned_cols=82  Identities=18%  Similarity=0.362  Sum_probs=64.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhh
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~  207 (371)
                      .|.......++++|||||||+|.++..+++.|+ +|+|+|.++ ++..|+++....   .+++++++|+.++++      
T Consensus        29 aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------  101 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------  101 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------
T ss_pred             HHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------
Confidence            344444455789999999999999999999875 899999996 667777776544   379999999998864      


Q ss_pred             HHHhhccCCCeeEEEecCC
Q 017450          208 LFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlP  226 (371)
                            +.+++|+|++++.
T Consensus       102 ------~~~~~D~i~se~~  114 (328)
T d1g6q1_         102 ------PFPKVDIIISEWM  114 (328)
T ss_dssp             ------SSSCEEEEEECCC
T ss_pred             ------cccceeEEEEEec
Confidence                  2367999998754

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=6.8e-09  Score=104.02  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=73.7

Q ss_pred             CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--------------------CCeEEEEeCCH
Q 017450          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQ  173 (371)
Q Consensus       114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--------------------~~~V~aIE~d~  173 (371)
                      ..++..|| |.|+..+++.|++.+.+.++.+|+|..||+|.+.....+.                    ...++|+|+++
T Consensus       138 ~~~~~~Gq-fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~  216 (524)
T d2ar0a1         138 ETKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP  216 (524)
T ss_dssp             -------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred             hhccccch-hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence            45677899 9999999999999999999999999999999988766542                    12589999999


Q ss_pred             HHHHHHHHHhccCC-------CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          174 HMVGLVRERFASID-------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       174 ~~i~~a~~~~~~~~-------~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      .++..++-++--.+       .-.+..+|...-+.           .....||+|++||||..
T Consensus       217 ~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~-----------~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         217 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-----------ENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             HHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH-----------HTSCCEEEEEECCCCTT
T ss_pred             HHHHHHHHHHHhhcccccccccchhhhhhhhhhcc-----------cccccceeEEecCCccc
Confidence            99999988764222       11234444443221           13467999999999953

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=5.3e-09  Score=92.33  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+..|||||||+|..+..+|+.  +..++|||+++.++..|.++....  .|+.++++|+..+...          ...+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~----------~~~~   98 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV----------FEPG   98 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH----------CCTT
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc----------cCch
Confidence            4568999999999999999997  578999999999999999888654  4999999999876411          2346


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      .+|.|+.+.|
T Consensus        99 ~~d~v~i~fp  108 (204)
T d2fcaa1          99 EVKRVYLNFS  108 (204)
T ss_dssp             SCCEEEEESC
T ss_pred             hhhccccccc
Confidence            6787776644

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.84  E-value=2.5e-09  Score=94.11  Aligned_cols=86  Identities=21%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~  200 (371)
                      .|++.+++.|++.+...++++|||.|||+|.++..+.+.   ..+++|+|+|+..+..+       ....++++|....+
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~   74 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE   74 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc
Confidence            478999999999999999999999999999998888764   45799999998754332       25678899988764


Q ss_pred             hhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      .             ...+|.+++|+||..
T Consensus        75 ~-------------~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          75 P-------------GEAFDLILGNPPYGI   90 (223)
T ss_dssp             C-------------SSCEEEEEECCCCCC
T ss_pred             c-------------ccccceecccCcccc
Confidence            2             367999999999954

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.82  E-value=6.2e-09  Score=97.36  Aligned_cols=98  Identities=19%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             cCCCHHHHHHHHHHh-cCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l-~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~  197 (371)
                      |+-.......+.+.+ ...++.+|||++||+|.++..++..|++|++||.++.+++.|++|+..++    +++++++|+.
T Consensus       113 f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~  192 (309)
T d2igta1         113 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  192 (309)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             ccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH
Confidence            344444445555444 34468899999999999999999999999999999999999999986432    6899999998


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++--..     .   .....||+||.|+|..
T Consensus       193 ~~l~~~-----~---~~~~~fD~IilDPP~f  215 (309)
T d2igta1         193 KFIQRE-----E---RRGSTYDIILTDPPKF  215 (309)
T ss_dssp             HHHHHH-----H---HHTCCBSEEEECCCSE
T ss_pred             HhHHHH-----h---hcCCCCCEEEECCCcc
Confidence            763211     1   1346799999999964

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=3.8e-09  Score=99.13  Aligned_cols=76  Identities=17%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~  214 (371)
                      ..++++|||||||+|.++..+++.|+ +|+|||.++.+ ..++++...+   ++++++++|+.++++            .
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~------------~   97 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL------------P   97 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC------------S
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc------------c
Confidence            34789999999999999999999975 79999999764 5555555433   379999999998764            2


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      ..++|+|+++...
T Consensus        98 ~~~~D~ivs~~~~  110 (316)
T d1oria_          98 VEKVDIIISEWMG  110 (316)
T ss_dssp             SSCEEEEEECCCB
T ss_pred             cceeEEEeeeeee
Confidence            3679999987553

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=1.7e-08  Score=88.25  Aligned_cols=93  Identities=10%  Similarity=0.290  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhh
Q 017450          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~  204 (371)
                      -+++.+++.+.+.+++.+||++||+|..|..+++.  +++|+|+|+|+.|++.+++++..++ ++.++++++.+++... 
T Consensus        10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~-   88 (192)
T d1m6ya2          10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL-   88 (192)
T ss_dssp             TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH-
T ss_pred             hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH-
Confidence            45677888889999999999999999999999986  5799999999999999999998764 8999999998875321 


Q ss_pred             hhhHHHhhccCCCeeEEEecCCC
Q 017450          205 MLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                           .. .....+|.|+.++.+
T Consensus        89 -----~~-~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          89 -----KT-LGIEKVDGILMDLGV  105 (192)
T ss_dssp             -----HH-TTCSCEEEEEEECSC
T ss_pred             -----HH-cCCCCcceeeeccch
Confidence                 11 234679999999875

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.78  E-value=7.5e-09  Score=89.65  Aligned_cols=91  Identities=20%  Similarity=0.276  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      .+.+|||+.||||.++...+.+|+ +|+.||.|...+..+++|++..+    ...++..|+.+.....         ...
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~---------~~~  113 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP---------QNQ  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC---------CSS
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccc---------ccC
Confidence            577999999999999999999987 89999999999999999987542    4677777766542210         123


Q ss_pred             CCeeEEEecCCCcc--cHHHHHHhccC
Q 017450          216 SGFAKVVANIPFNI--STDVIKQLLPM  240 (371)
Q Consensus       216 ~~~d~VVaNlPy~i--ss~il~~Ll~~  240 (371)
                      ..||+|+.+|||..  ..+++..+...
T Consensus       114 ~~fDlIFlDPPY~~~~~~~~l~~l~~~  140 (183)
T d2ifta1         114 PHFDVVFLDPPFHFNLAEQAISLLCEN  140 (183)
T ss_dssp             CCEEEEEECCCSSSCHHHHHHHHHHHT
T ss_pred             CcccEEEechhHhhhhHHHHHHHHHHh
Confidence            56999999999954  34455544443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.76  E-value=1.3e-08  Score=89.67  Aligned_cols=78  Identities=13%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ....|||||||+|.++..+|+.  ...++|||+++.++..|.++....  .|+.++++|+.++...          ....
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~----------~~~~  100 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----------FEDG  100 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----------SCTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh----------ccCC
Confidence            4568999999999999999997  568999999999999998887644  5999999999876411          1346


Q ss_pred             CeeEEEecCCCc
Q 017450          217 GFAKVVANIPFN  228 (371)
Q Consensus       217 ~~d~VVaNlPy~  228 (371)
                      .+|.|+.+.|--
T Consensus       101 ~~~~i~i~fPdP  112 (204)
T d1yzha1         101 EIDRLYLNFSDP  112 (204)
T ss_dssp             CCSEEEEESCCC
T ss_pred             ceehhccccccc
Confidence            788888887643

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=6.9e-09  Score=90.56  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .++.+|||||||+|.++..++    +++|||+++.|++.++++     +++++++|+.++++.            ...||
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~~~------------~~~fD   93 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR-----GVFVLKGTAENLPLK------------DESFD   93 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCCSC------------TTCEE
T ss_pred             CCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc-----ccccccccccccccc------------ccccc
Confidence            355689999999999887773    579999999999999875     789999999988652            36799


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      +|+++.-
T Consensus        94 ~I~~~~~  100 (208)
T d1vlma_          94 FALMVTT  100 (208)
T ss_dssp             EEEEESC
T ss_pred             ccccccc
Confidence            9998643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=2.9e-08  Score=88.11  Aligned_cols=94  Identities=14%  Similarity=0.182  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccccc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~  198 (371)
                      +.++..+.+...+...++++|||||||+|++|.+|++.   +.+|+++|+++++++.|++++...+   +++++.||+.+
T Consensus        40 i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          40 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  119 (214)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence            55666666666666667789999999999999999975   5799999999999999999887543   79999999987


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEec
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVAN  224 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaN  224 (371)
                      .-..     +... .....+|.|+.+
T Consensus       120 ~l~~-----l~~~-~~~~~~D~ifiD  139 (214)
T d2cl5a1         120 LIPQ-----LKKK-YDVDTLDMVFLD  139 (214)
T ss_dssp             HGGG-----HHHH-SCCCCEEEEEEC
T ss_pred             cccc-----hhhc-ccccccceeeec
Confidence            5321     1111 123568988865

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=6.2e-08  Score=93.71  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhc
Q 017450          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      +.+..+..|++.++++++++|||||||+|.++..+|.. + ++|+|||+++.+++.|+++..
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999986 5 489999999999999998764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.65  E-value=4.6e-08  Score=87.56  Aligned_cols=98  Identities=11%  Similarity=0.104  Sum_probs=75.1

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~  196 (371)
                      ..+.+.....+...+...++++|||||+|+|+.|.+|++.   +++|+++|.|++.++.|++++...+   +++++.||+
T Consensus        41 m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          41 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            3466766666666666667889999999999999999974   5799999999999999999998654   799999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      .+.-..     +...-...+.||.|+.+-
T Consensus       121 ~~~L~~-----l~~~~~~~~~fD~iFiDa  144 (227)
T d1susa1         121 LPVLDE-----MIKDEKNHGSYDFIFVDA  144 (227)
T ss_dssp             HHHHHH-----HHHCGGGTTCBSEEEECS
T ss_pred             HHHHHH-----HHhccccCCceeEEEecc
Confidence            875322     111001235799999753

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.65  E-value=4.1e-08  Score=92.16  Aligned_cols=97  Identities=12%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             cCCCHH-HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEccc
Q 017450          123 YMLNSE-INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDF  196 (371)
Q Consensus       123 fl~~~~-v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~  196 (371)
                      +..|+. ....++..+  .+|++|||++||+|.++..++..|+ +|++||+++.+++.+++|++.++    +++++.+|+
T Consensus       127 lflDqR~~r~~l~~~~--~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         127 IFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             SCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             CcHHHHHHHHHHHHHh--hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            334443 445555443  3688999999999999999888776 79999999999999999987542    789999999


Q ss_pred             ccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      .++--.     +.   .....||+||.+||...
T Consensus       205 ~~~l~~-----~~---~~~~~fD~Ii~DPP~f~  229 (317)
T d2b78a2         205 FDYFKY-----AR---RHHLTYDIIIIDPPSFA  229 (317)
T ss_dssp             HHHHHH-----HH---HTTCCEEEEEECCCCC-
T ss_pred             HHHHHH-----HH---hhcCCCCEEEEcChhhc
Confidence            765211     10   13467999999999543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.62  E-value=8.3e-08  Score=86.74  Aligned_cols=81  Identities=20%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhh
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~  204 (371)
                      ...++..+...+.++|||||||+|.++..++++  +.+++++|+ +.+++.+++++...   ++++++.+|+.+.     
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-----  142 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-----  142 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-----
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-----
Confidence            456677777778889999999999999999997  568999998 67899999888754   3899999998763     


Q ss_pred             hhhHHHhhccCCCeeEEEecC
Q 017450          205 MLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       205 ~~~l~~~~~~~~~~d~VVaNl  225 (371)
                               .++.+|+|+.+-
T Consensus       143 ---------~~~~~D~v~~~~  154 (253)
T d1tw3a2         143 ---------LPRKADAIILSF  154 (253)
T ss_dssp             ---------CSSCEEEEEEES
T ss_pred             ---------cccchhheeecc
Confidence                     124688887653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.5e-08  Score=89.44  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--------CCeEEEEeCCHHHHHHHHHHhccCC---Ce--EEEEcccccchhhhhhhh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--------GATVLAIEKDQHMVGLVRERFASID---QL--KVLQEDFVKCHIRSHMLS  207 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--------~~~V~aIE~d~~~i~~a~~~~~~~~---~v--~vi~gD~~~~~~~~~~~~  207 (371)
                      ++.+|||||||+|.++..++..        +.+++|||+++.|++.+++++....   ++  .+...++.++...     
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  114 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSR-----  114 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHH-----
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcch-----
Confidence            3348999999999999888763        2368999999999999999987543   33  3334444332110     


Q ss_pred             HHHhhccCCCeeEEEecCCC
Q 017450          208 LFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       208 l~~~~~~~~~~d~VVaNlPy  227 (371)
                      .... .....||+|++.--+
T Consensus       115 ~~~~-~~~~~fD~I~~~~~l  133 (280)
T d1jqea_         115 MLEK-KELQKWDFIHMIQML  133 (280)
T ss_dssp             HTTS-SSCCCEEEEEEESCG
T ss_pred             hccc-CCCCceeEEEEccce
Confidence            1000 235679999986443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.28  E-value=2e-06  Score=77.67  Aligned_cols=68  Identities=25%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (371)
Q Consensus       130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~  198 (371)
                      +..+++..+..+..+|||||||+|.++..++++  +.+++++|+ +++++.+++++...   ++++++.+|+.+
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~  142 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK  142 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc
Confidence            445666666677789999999999999999997  579999998 78899999888654   378999999875

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.18  E-value=4.8e-06  Score=71.55  Aligned_cols=90  Identities=16%  Similarity=0.279  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (371)
Q Consensus       129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l  208 (371)
                      +++.+++.+.+.++..++|..+|.|..|..+++.+++|+|+|+|+.++..+++..  ..++.++++++.++...      
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~~~------   77 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKRH------   77 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHHHH------
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHHHH------
Confidence            4667788888999999999999999999999999889999999999999998763  35899999999886532      


Q ss_pred             HHhhccCCCeeEEEecCCC
Q 017450          209 FERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       209 ~~~~~~~~~~d~VVaNlPy  227 (371)
                      +.. ...+.+|.|+.++-+
T Consensus        78 l~~-~~~~~vdgIl~DLGv   95 (182)
T d1wg8a2          78 LAA-LGVERVDGILADLGV   95 (182)
T ss_dssp             HHH-TTCSCEEEEEEECSC
T ss_pred             HHH-cCCCccCEEEEEccC
Confidence            111 133679999999855

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.4e-06  Score=77.63  Aligned_cols=47  Identities=11%  Similarity=0.136  Sum_probs=40.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~  186 (371)
                      .++.+|||||||+|..+..++..+. +|+|+|+++.+++.|++++...
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~   97 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE   97 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhc
Confidence            4678999999999999888877655 7999999999999999987643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.00  E-value=1.2e-05  Score=74.64  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLF  209 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~  209 (371)
                      ...+++||.||.|.|..+..+++.  ..+|++||+|+.+++.+++.+..       .++++++.+|+.++-..       
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-------  147 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-------  147 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-------
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-------
Confidence            446789999999999999999876  35899999999999999998732       35899999999886321       


Q ss_pred             HhhccCCCeeEEEecC
Q 017450          210 ERRKSSSGFAKVVANI  225 (371)
Q Consensus       210 ~~~~~~~~~d~VVaNl  225 (371)
                          ....||+|+.++
T Consensus       148 ----~~~~yDvIi~D~  159 (312)
T d1uira_         148 ----TEERYDVVIIDL  159 (312)
T ss_dssp             ----CCCCEEEEEEEC
T ss_pred             ----cCCcccEEEEeC
Confidence                346799999876

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.95  E-value=1e-05  Score=73.89  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhcc------------CCCeEEEEcccccchhhhhh
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFAS------------IDQLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~------------~~~v~vi~gD~~~~~~~~~~  205 (371)
                      ...+++||.||.|.|..+..+++.. .+|++||+|+.+++.+++.+..            .++++++.+|+.++--    
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~----  145 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK----  145 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH----
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh----
Confidence            4467899999999999999888764 5899999999999999987632            3589999999987521    


Q ss_pred             hhHHHhhccCCCeeEEEecCCC
Q 017450          206 LSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                              ....||+|+.+++-
T Consensus       146 --------~~~~yDvIi~D~~~  159 (276)
T d1mjfa_         146 --------NNRGFDVIIADSTD  159 (276)
T ss_dssp             --------HCCCEEEEEEECCC
T ss_pred             --------ccCCCCEEEEeCCC
Confidence                    23679999988754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=1.9e-05  Score=72.71  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+++||-||.|.|..+..+++.  ..+|++||+|+.+++.+++.+..      .++++++.+|+.++--          
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~----------  157 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----------  157 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh----------
Confidence            45689999999999999999986  35899999999999999987642      3589999999987632          


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                       .....||+|+.+++
T Consensus       158 -~~~~~yDvIi~D~~  171 (295)
T d1inla_         158 -KFKNEFDVIIIDST  171 (295)
T ss_dssp             -GCSSCEEEEEEEC-
T ss_pred             -cCCCCCCEEEEcCC
Confidence             13467999998764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4.1e-05  Score=70.32  Aligned_cols=90  Identities=13%  Similarity=0.113  Sum_probs=73.1

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhh
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~  205 (371)
                      ...+..+.+.+|++|||..+|.|.=|..|++.   ...|+|+|+++.-+..+++++...+  ++.+...|+..++..+. 
T Consensus        84 ~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~-  162 (293)
T d2b9ea1          84 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-  162 (293)
T ss_dssp             GHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-
T ss_pred             cccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc-
Confidence            34556678889999999999999999988874   4689999999999999999998765  89999999988754321 


Q ss_pred             hhHHHhhccCCCeeEEEecCCCcc
Q 017450          206 LSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       206 ~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                              ..+.||.|+.+.|=.-
T Consensus       163 --------~~~~fD~VL~DaPCSg  178 (293)
T d2b9ea1         163 --------RYHEVHYILLDPSCSG  178 (293)
T ss_dssp             --------GGTTEEEEEECCCCCC
T ss_pred             --------ccceeeEEeecCcccc
Confidence                    1256999999999543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=9.9e-06  Score=73.13  Aligned_cols=56  Identities=11%  Similarity=0.023  Sum_probs=43.0

Q ss_pred             HHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhcc
Q 017450          130 NDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       130 ~~~i~~~l--~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      +..+.+..  ....|.+|||||||+|.++...+.. +.+|+|+|+++.|++.+++.+..
T Consensus        41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            34444433  3446889999999999887655544 66899999999999999988754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.78  E-value=1.6e-05  Score=71.52  Aligned_cols=85  Identities=18%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             HHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-----------CCeEEEEcccccc
Q 017450          133 LAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFVKC  199 (371)
Q Consensus       133 i~~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-----------~~v~vi~gD~~~~  199 (371)
                      +..++..+.+  .+|||.-+|.|.-+..++..|++|++||.++.+...++..+...           .+++++++|+.++
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~  157 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA  157 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence            4445554443  48999999999999999999999999999999888877655321           2789999998875


Q ss_pred             hhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      -..           ..+.+|+|+-.|+|.
T Consensus       158 L~~-----------~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         158 LTD-----------ITPRPQVVYLDPMFP  175 (250)
T ss_dssp             STT-----------CSSCCSEEEECCCCC
T ss_pred             Hhc-----------cCCCCCEEEECCCCc
Confidence            321           235689999999994

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=5e-05  Score=69.15  Aligned_cols=77  Identities=14%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhc------cCCCeEEEEcccccchhhhhhhhHHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~------~~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ...+++||-||-|.|..+..+++.  ..+|+.||+|+..++.+++.+.      ..++++++.+|+.+.-.         
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~---------  143 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---------  143 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH---------
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh---------
Confidence            346689999999999999999986  3599999999999999999874      23589999999987532         


Q ss_pred             hhccCCCeeEEEecCC
Q 017450          211 RRKSSSGFAKVVANIP  226 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlP  226 (371)
                        ....+||+|+.+++
T Consensus       144 --~~~~~yDvIi~D~~  157 (274)
T d1iy9a_         144 --KSENQYDVIMVDST  157 (274)
T ss_dssp             --TCCSCEEEEEESCS
T ss_pred             --hcCCCCCEEEEcCC
Confidence              13467999998764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=6.3e-05  Score=68.83  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhc------cCCCeEEEEcccccchhhhhhhhHHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~------~~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ...+++||-||-|.|..+..+++.  ..+|+.||+|+.+++.+++.+.      ..++++++.+|+.++--         
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~---------  146 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---------  146 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---------
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh---------
Confidence            446789999999999999999986  4599999999999999998874      23699999999987532         


Q ss_pred             hhccCCCeeEEEecCC
Q 017450          211 RRKSSSGFAKVVANIP  226 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlP  226 (371)
                        .....||+|+.+++
T Consensus       147 --~~~~~yDvIi~D~~  160 (285)
T d2o07a1         147 --QNQDAFDVIITDSS  160 (285)
T ss_dssp             --TCSSCEEEEEEECC
T ss_pred             --cCCCCCCEEEEcCC
Confidence              13467999998864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.65  E-value=6.3e-05  Score=69.65  Aligned_cols=77  Identities=17%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHH
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~  210 (371)
                      ...+++||-||-|.|..+..+++..  .+|+.||+|+.+++.+++.+..      .++++++.+|+.++--         
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~---------  174 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---------  174 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---------
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH---------
Confidence            3467899999999999999999863  5899999999999999998753      2589999999987531         


Q ss_pred             hhccCCCeeEEEecCC
Q 017450          211 RRKSSSGFAKVVANIP  226 (371)
Q Consensus       211 ~~~~~~~~d~VVaNlP  226 (371)
                        .....||+|+.+++
T Consensus       175 --~~~~~yDvII~D~~  188 (312)
T d2b2ca1         175 --NHKNEFDVIITDSS  188 (312)
T ss_dssp             --HCTTCEEEEEECCC
T ss_pred             --hCCCCCCEEEEcCC
Confidence              13467999998864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.61  E-value=0.00011  Score=67.35  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhc------cCCCeEEEEcccccchhhhhhhhHHHh
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~------~~~~v~vi~gD~~~~~~~~~~~~l~~~  211 (371)
                      ..+++||-||-|.|..+..+++. + .+|++||+|+.+++.+++.+.      ..++++++.+|+.+.-..         
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~---------  149 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---------  149 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh---------
Confidence            45689999999999999999986 3 589999999999999999763      246999999999875321         


Q ss_pred             hccCCCeeEEEecCC
Q 017450          212 RKSSSGFAKVVANIP  226 (371)
Q Consensus       212 ~~~~~~~d~VVaNlP  226 (371)
                       .....||+|+.+++
T Consensus       150 -~~~~~yDvIi~D~~  163 (290)
T d1xj5a_         150 -AAEGSYDAVIVDSS  163 (290)
T ss_dssp             -SCTTCEEEEEECCC
T ss_pred             -ccccCccEEEEcCC
Confidence             12357999998764

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.55  E-value=3.4e-05  Score=68.56  Aligned_cols=84  Identities=12%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             cccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHhccCCC
Q 017450          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQ  188 (371)
Q Consensus       115 ~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~a~~~~~~~~~  188 (371)
                      .-.+.|...+-.|.-+..+-+.+.-.++++|||||++.|.++..++..      .++|+++|+++........   ...+
T Consensus        54 ~~~w~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~~~~  130 (232)
T d2bm8a1          54 PYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---DMEN  130 (232)
T ss_dssp             CCEETTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---GCTT
T ss_pred             CccccceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---cccc
Confidence            345677766666766665555555446789999999999999887752      4689999999765433222   2358


Q ss_pred             eEEEEcccccchh
Q 017450          189 LKVLQEDFVKCHI  201 (371)
Q Consensus       189 v~vi~gD~~~~~~  201 (371)
                      +++++||..+...
T Consensus       131 I~~i~gDs~~~~~  143 (232)
T d2bm8a1         131 ITLHQGDCSDLTT  143 (232)
T ss_dssp             EEEEECCSSCSGG
T ss_pred             eeeeecccccHHH
Confidence            9999999876543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00025  Score=61.73  Aligned_cols=84  Identities=18%  Similarity=0.264  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchh
Q 017450          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (371)
Q Consensus       126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~  201 (371)
                      ..++++.+.-.-.. ++++|+|||+|.|.=+..+|-.  ..+++.+|.+..-+..+++-....  .|++++++++.+.. 
T Consensus        51 ~rHi~DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-  128 (207)
T d1jsxa_          51 VRHILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-  128 (207)
T ss_dssp             HHHHHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-
T ss_pred             HHHhcchHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-
Confidence            34555555433333 5679999999999988888864  579999999999999988877655  48999999999863 


Q ss_pred             hhhhhhHHHhhccCCCeeEEEe
Q 017450          202 RSHMLSLFERRKSSSGFAKVVA  223 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVa  223 (371)
                                  ....||+|++
T Consensus       129 ------------~~~~fD~V~s  138 (207)
T d1jsxa_         129 ------------SEPPFDGVIS  138 (207)
T ss_dssp             ------------CCSCEEEEEC
T ss_pred             ------------cccccceehh
Confidence                        2356898886

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.30  E-value=0.00043  Score=63.85  Aligned_cols=93  Identities=14%  Similarity=0.239  Sum_probs=73.3

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~  197 (371)
                      +.+........+..+.+++|++|||+.+|.|.=|..+++.   ...++++|+++.-+..+++++...+  ++.+...|..
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~  177 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  177 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccc
Confidence            3333344555667788999999999999999988888875   3579999999999999998887654  7888888887


Q ss_pred             cchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (371)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy  227 (371)
                      ..+.            ....||.|+.+.|=
T Consensus       178 ~~~~------------~~~~fD~ILvDaPC  195 (313)
T d1ixka_         178 HIGE------------LNVEFDKILLDAPC  195 (313)
T ss_dssp             GGGG------------GCCCEEEEEEECCT
T ss_pred             cccc------------ccccccEEEEcccc
Confidence            7643            24679999998884

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00071  Score=61.44  Aligned_cols=96  Identities=15%  Similarity=0.233  Sum_probs=71.5

Q ss_pred             cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccccc
Q 017450          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (371)
Q Consensus       123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~  198 (371)
                      +.++.......+..+.+.++++|||+.+|.|.=|..|++.+  ..|+|+|+++..+..+++++...+  ++.+...|...
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~  163 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  163 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence            33444445556667888999999999999999999998863  579999999999999999988765  45555555443


Q ss_pred             chhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (371)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i  229 (371)
                      ...           .....||.|+.+.|=.-
T Consensus       164 ~~~-----------~~~~~fd~IL~DaPCSg  183 (284)
T d1sqga2         164 SQW-----------CGEQQFDRILLDAPCSA  183 (284)
T ss_dssp             HHH-----------HTTCCEEEEEEECCCCC
T ss_pred             chh-----------cccccccEEEEeccccc
Confidence            222           13467999999988543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.03  E-value=0.0021  Score=56.87  Aligned_cols=65  Identities=6%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       129 v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ....+++... .....+|||||||+|.++..++++  +.+++..|+. ..++    .....++++++.||+.+
T Consensus        68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~----~~~~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE----NAPPLSGIEHVGGDMFA  135 (244)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh----ccCCCCCeEEecCCccc
Confidence            4556666666 355689999999999999999987  5688899873 3332    22223589999999865

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.03  E-value=0.00086  Score=58.66  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~  184 (371)
                      ..+..++++++.... .+|+.|||.-||+|..+.+..+.|.+.+|+|+|++.++.|++++.
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            356788999998875 678999999999999888888889999999999999999999874

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0016  Score=55.02  Aligned_cols=78  Identities=19%  Similarity=0.295  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      +++.+|||+||+.|..+..+++.   ...|+++|+.+-         ...+++.++++|+.+..........    ....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~i~~~~~~~~d~~~~~~~~~~~~~----~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DPIVGVDFLQGDFRDELVMKALLER----VGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CCCTTEEEEESCTTSHHHHHHHHHH----HTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cccCCceEeecccccchhhhhhhhh----ccCc
Confidence            57889999999999999999885   358999997652         2335889999999875433222111    2346


Q ss_pred             CeeEEEecCCCccc
Q 017450          217 GFAKVVANIPFNIS  230 (371)
Q Consensus       217 ~~d~VVaNlPy~is  230 (371)
                      ++|+|+++...+.+
T Consensus        88 ~~DlVlSD~ap~~s  101 (180)
T d1ej0a_          88 KVQVVMSDMAPNMS  101 (180)
T ss_dssp             CEEEEEECCCCCCC
T ss_pred             ceeEEEecccchhc
Confidence            79999999766654

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.96  E-value=0.00031  Score=62.81  Aligned_cols=86  Identities=15%  Similarity=0.111  Sum_probs=58.4

Q ss_pred             HhcCCCCCEEEEEcCcccHHHHHHHHhC------------------------------------------CeEEEEeCCH
Q 017450          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG------------------------------------------ATVLAIEKDQ  173 (371)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~------------------------------------------~~V~aIE~d~  173 (371)
                      ...-..+..++|.=||+|++.+..+-.+                                          .+++|.|+|+
T Consensus        45 l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~  124 (249)
T d1o9ga_          45 RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL  124 (249)
T ss_dssp             TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCH
Confidence            3344456689999999999877654311                                          2467888888


Q ss_pred             HHHHHHH---HHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450          174 HMVGLVR---ERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (371)
Q Consensus       174 ~~i~~a~---~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~  228 (371)
                      ++++.|+   +|....+   .+++.++|+.+......   +    ..+..+.+||+||||.
T Consensus       125 ~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~---~----~~~~~~GlIVtNPPYG  178 (249)
T d1o9ga_         125 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSA---V----LAGSAPDVVLTDLPYG  178 (249)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH---H----HTTCCCSEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchh---c----cCCCCCCEEEeCCCcc
Confidence            8888874   4654433   67899999876543211   0    1235578999999994

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.90  E-value=0.0016  Score=58.82  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             EEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV  222 (371)
                      +|||+-||.|.++..+.+.|.+ +.++|+|+.+++..+.|+.    -.++.+|+.+++..+           .+..|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~~-----------~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDE-----------FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGGG-----------SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHhH-----------cccccEEe
Confidence            6999999999999999888876 4599999999999988874    356789999886542           35689999


Q ss_pred             ecCC
Q 017450          223 ANIP  226 (371)
Q Consensus       223 aNlP  226 (371)
                      +.+|
T Consensus        67 ~g~P   70 (324)
T d1dcta_          67 GGPP   70 (324)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9887

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.89  E-value=0.0012  Score=58.39  Aligned_cols=74  Identities=9%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .+.+|+|||+|.|.=+..++-.  ..+++.+|.+..-+..++.-....  .|+.++++.+.++....         ...+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~---------~~~~  140 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------DVRE  140 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------TTTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccc---------cccc
Confidence            4679999999999988888864  679999999999888888766543  48999999998764321         1135


Q ss_pred             CeeEEEe
Q 017450          217 GFAKVVA  223 (371)
Q Consensus       217 ~~d~VVa  223 (371)
                      .||+|++
T Consensus       141 ~~D~v~s  147 (239)
T d1xdza_         141 SYDIVTA  147 (239)
T ss_dssp             CEEEEEE
T ss_pred             cceEEEE
Confidence            7898886

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.84  E-value=0.001  Score=59.93  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      ..+..++++++...- .+|+.|||.-||+|..+.+..+.|.+.+|+|++++.++.+++++..
T Consensus       234 ~kP~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         234 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCchHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            456788999998774 5789999999999998888888899999999999999999999864

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.71  E-value=0.0017  Score=57.43  Aligned_cols=61  Identities=15%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (371)
Q Consensus       124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~  185 (371)
                      ..+..++++++...- .+|+.|||.-+|+|..+.+..+.|.+.+|+|+|+..++.+++++..
T Consensus       191 ~kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         191 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            466788999998774 6899999999999998888888899999999999999999999874

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.69  E-value=0.0025  Score=60.04  Aligned_cols=83  Identities=13%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC-----------------CeEEEEcccccchh
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID-----------------QLKVLQEDFVKCHI  201 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~-----------------~v~vi~gD~~~~~~  201 (371)
                      ++.+|||..||+|..++..+.. + .+|+++|+|+..++.+++|++.++                 ++.+.+.|+..+-.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            5779999999999999976654 4 489999999999999999985331                 35566677655432


Q ss_pred             hhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (371)
Q Consensus       202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~  235 (371)
                      .           ....||+|.-+ ||.-+.|.+.
T Consensus       125 ~-----------~~~~fDvIDiD-PfGs~~pfld  146 (375)
T d2dula1         125 E-----------RHRYFHFIDLD-PFGSPMEFLD  146 (375)
T ss_dssp             H-----------STTCEEEEEEC-CSSCCHHHHH
T ss_pred             h-----------hcCcCCcccCC-CCCCcHHHHH
Confidence            1           34569999888 5877777765

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.60  E-value=0.0031  Score=57.28  Aligned_cols=71  Identities=18%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .+-+|||+-||.|.++..|.+.|.+ |.++|+|+.+++..+.|+...     .++|+.+++..+           .+..|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~~-----------~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEKT-----------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGGG-----------SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchhh-----------cceee
Confidence            4679999999999999999888876 568999999999999998642     368888876532           35689


Q ss_pred             EEEecCCC
Q 017450          220 KVVANIPF  227 (371)
Q Consensus       220 ~VVaNlPy  227 (371)
                      ++++.+|=
T Consensus        74 ll~ggpPC   81 (327)
T d2c7pa1          74 ILCAGFPC   81 (327)
T ss_dssp             EEEEECCC
T ss_pred             eeeccccc
Confidence            99999873

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0019  Score=58.81  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             CCEEEEEcCcccHHHHHHHHhCC--e-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          142 GDIVLEIGPGTGSLTNVLLNAGA--T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~--~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      +-+|+|+.||.|.++..|...|.  + |.++|+|+.+++..+.|+.   +..++.+|+.+++..+.         .....
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---~~~~~~~di~~~~~~~~---------~~~~~   69 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEEF---------DRLSF   69 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHHH---------HHHCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---CCCcccCchhhCCHhHc---------CCCCc
Confidence            35799999999999988877774  4 6799999999999998864   56678899988775432         11358


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      |++++.+|
T Consensus        70 Dll~ggpP   77 (343)
T d1g55a_          70 DMILMSPP   77 (343)
T ss_dssp             SEEEECCC
T ss_pred             cEEEeecc
Confidence            99999988

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.34  E-value=0.006  Score=53.80  Aligned_cols=53  Identities=13%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ...+|||||||+|.++..++++  ..+++..|+. ..++.    ....++++++.+|+.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~----~~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVEN----LSGSNNLTYVGGDMFT  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT----CCCBTTEEEEECCTTT
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHh----CcccCceEEEecCccc
Confidence            4468999999999999999987  5699999983 33332    2223589999999876

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.21  E-value=0.01  Score=52.11  Aligned_cols=64  Identities=11%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             HHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450          130 NDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       130 ~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ...++..... ....+|||||||+|.++..++++  +.+++..|+-+. ++    .....++++++.+|+.+
T Consensus        69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFV  135 (243)
T ss_dssp             HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEecccccc
Confidence            3455555544 33578999999999999999997  568999998543 22    12223589999999865

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.02  E-value=0.014  Score=54.23  Aligned_cols=74  Identities=24%  Similarity=0.352  Sum_probs=48.4

Q ss_pred             ccCc--ccCCCHHHHHH--------HHHH---hcCCCCCEEEEEcCcccHHHHHHHHh---------CCeEEEEeCCHHH
Q 017450          118 SLGQ--HYMLNSEINDQ--------LAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHM  175 (371)
Q Consensus       118 ~lGQ--~fl~~~~v~~~--------i~~~---l~~~~~~~VLEIG~G~G~lt~~La~~---------~~~V~aIE~d~~~  175 (371)
                      .+|.  .|+|.|++-..        ++..   +...+.-.|+|+|+|.|.|+.-++..         ..+++-+|.++.+
T Consensus        43 ~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L  122 (365)
T d1zkda1          43 PLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL  122 (365)
T ss_dssp             -------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred             CCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence            4454  69998876322        2222   22223348999999999998877652         2368999999999


Q ss_pred             HHHHHHHhccCCCeEE
Q 017450          176 VGLVRERFASIDQLKV  191 (371)
Q Consensus       176 i~~a~~~~~~~~~v~v  191 (371)
                      .+.-++++....++++
T Consensus       123 ~~~Q~~~l~~~~~i~w  138 (365)
T d1zkda1         123 RQKQQTLLAGIRNIHW  138 (365)
T ss_dssp             HHHHHHHSTTCSSEEE
T ss_pred             HHHHHHHhccccccee
Confidence            9888888775555554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.82  E-value=0.077  Score=42.96  Aligned_cols=52  Identities=27%  Similarity=0.354  Sum_probs=43.0

Q ss_pred             HHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHh
Q 017450          132 QLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~  183 (371)
                      ..+...+++++++||=+||| .|.++..+++. |++|+++|.+++-.+.|++.-
T Consensus        17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g   70 (170)
T d1e3ja2          17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG   70 (170)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC
Confidence            34566788899999999998 67777777775 889999999999999998753

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.59  E-value=0.0076  Score=51.06  Aligned_cols=57  Identities=21%  Similarity=0.122  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHhcC-CCCCEEEEEcCcccHH----HHHHHHh----C--CeEEEEeCCHHHHHHHHHH
Q 017450          126 NSEINDQLAAAAAV-QEGDIVLEIGPGTGSL----TNVLLNA----G--ATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       126 ~~~v~~~i~~~l~~-~~~~~VLEIG~G~G~l----t~~La~~----~--~~V~aIE~d~~~i~~a~~~  182 (371)
                      ++...+.+.+.+.. .+.-+||++|||+|.-    +..+.+.    +  .+|+|.|+|+.+++.|++-
T Consensus         8 d~~~f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2           8 EAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             TTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            33333444443322 2344999999999983    3334432    1  2699999999999998753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.016  Score=47.44  Aligned_cols=50  Identities=20%  Similarity=0.222  Sum_probs=41.8

Q ss_pred             HHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .+....++++++||-+|+| .|.++..+++. |++|+++|.+++..+.+++.
T Consensus        19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            3445678899999999998 67777777765 89999999999999988775

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.03  E-value=0.035  Score=43.45  Aligned_cols=69  Identities=14%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             EEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      +|+=+|+  |..+..+++    .|.+|+.||.|++.++.+.+.+    ++.+++||+.+...-..        ......+
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~--------~~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLED--------AGIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHH--------TTTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhhhh--------cChhhhh
Confidence            4555665  666655554    4889999999999999887654    57799999988654211        1234567


Q ss_pred             EEEecCC
Q 017450          220 KVVANIP  226 (371)
Q Consensus       220 ~VVaNlP  226 (371)
                      .+++-.+
T Consensus        68 ~vv~~t~   74 (132)
T d1lssa_          68 MYIAVTG   74 (132)
T ss_dssp             EEEECCS
T ss_pred             hhcccCC
Confidence            7776444

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.98  E-value=0.06  Score=47.37  Aligned_cols=82  Identities=13%  Similarity=0.170  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      +|+++|=.|++.|.   ++..|++.|++|+.++++++-++.+.+.+...+.+.++.+|+.+.+--+. .....+   ..+
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIA---KHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHH---HcC
Confidence            67899999987775   45666677999999999999988888888766688889999876542221 222222   235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        82 ~iD~lVnnA   90 (268)
T d2bgka1          82 KLDIMFGNV   90 (268)
T ss_dssp             CCCEEEECC
T ss_pred             Ccceecccc
Confidence            789999764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.089  Score=45.79  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      .|+.||=-|++.|.   ++..+++.|++|+.++++++-++.+.+.+... +++..+.+|..+.+--+...+.+.  ...+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~--~~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK--AEIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            57899999998876   67777888999999999999888777777654 478899999988653322222111  1346


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        84 ~idilinna   92 (244)
T d1yb1a_          84 DVSILVNNA   92 (244)
T ss_dssp             CCSEEEECC
T ss_pred             CCceeEeec
Confidence            789999874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.54  E-value=0.04  Score=46.44  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      -++.+++++|++||-+|||. |.++..+++. ++ +|+++|.++..++.|++.
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            35667889999999999998 6677777764 54 899999999999998876

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.35  E-value=0.085  Score=45.97  Aligned_cols=84  Identities=17%  Similarity=0.256  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      +|+++|=-|.+.|.   .+..|++.|++|+.++++++..+.+.+.+...+++..+.+|+.+.+--+...+...  ...+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATE--KAFGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHH--HHhCC
Confidence            57889888877764   56667778999999999999988888877655689999999987543222221111  12367


Q ss_pred             eeEEEecCC
Q 017450          218 FAKVVANIP  226 (371)
Q Consensus       218 ~d~VVaNlP  226 (371)
                      .|++|.|--
T Consensus        83 iDiLVnnAg   91 (251)
T d1zk4a1          83 VSTLVNNAG   91 (251)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEeccc
Confidence            899998853

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.07  Score=46.74  Aligned_cols=84  Identities=14%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh-hhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS-HMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~-~~~~l~~~~~  213 (371)
                      +++.||=.|++.|.   ++..|++.|++|+.++++++-++.+.+.+...   +++..+.+|+.+-.--+ ......+   
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~---   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS---   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH---
Confidence            57899999998776   55666777999999999999888777766543   26778899998743221 1222222   


Q ss_pred             cCCCeeEEEecCCC
Q 017450          214 SSSGFAKVVANIPF  227 (371)
Q Consensus       214 ~~~~~d~VVaNlPy  227 (371)
                      ..+..|++|.|-..
T Consensus        86 ~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QHSGVDICINNAGL   99 (257)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hcCCCCEEEecccc
Confidence            23668999988543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.03  E-value=0.17  Score=44.17  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      +|++||=.|++.|.   ++..+++.|++|+.+++++.-++.+.+.+...+ ++..+.+|+.+.+.-+...+...+ ...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH-VFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH-HhCC
Confidence            68899999998774   566777789999999999988887777776543 788889999876533222221111 1224


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|+++.|.
T Consensus        84 ~idilinna   92 (258)
T d1ae1a_          84 KLNILVNNA   92 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CcEEEeccc
Confidence            678888764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.97  E-value=0.14  Score=44.79  Aligned_cols=82  Identities=11%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchh-hhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI-RSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~-~~~~~~l~~~~~~~  215 (371)
                      +|+++|=.|.+.|.   ++..|++.|++|+.++++++.++.+.+.+...+ ++..+.+|+.+.+- ........+   ..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR---DF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            57899999987765   567777889999999999999888888776554 78889999876442 222222222   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        81 g~iDilVnna   90 (260)
T d1zema1          81 GKIDFLFNNA   90 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCeehhhh
Confidence            6789999774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.93  E-value=0.13  Score=44.73  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      +++.+|=.|.+.|.   ++..|++.|++|+.++++++.++.+.+.+...+ ++..+.+|+.+.+--+...+...  ...+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL--TEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence            57888888987663   445555668999999999999888888776654 78899999987542221111111  1346


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|..
T Consensus        87 ~iDilvnnag   96 (251)
T d2c07a1          87 NVDILVNNAG   96 (251)
T ss_dssp             CCCEEEECCC
T ss_pred             Cceeeeeccc
Confidence            7899998853

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.61  E-value=0.063  Score=44.18  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=39.2

Q ss_pred             HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      +...+++|++||=+|+|. |.++..+++. |+ +|+++|.++...+.+++.
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            334677899999999983 7777788876 76 899999999999988764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.44  E-value=0.22  Score=43.36  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      +|+++|=-|.+.|.   ++..|++.|++|+.++++++-++.+.+.+... .++..+.+|..+.+--+... ...+.  ..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~--~~   84 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH--FH   84 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--TT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH--hC
Confidence            58899999988765   56677778999999999999888777776654 37788899987654322111 11111  12


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      ...|++|.|-
T Consensus        85 ~~idilvnnA   94 (259)
T d2ae2a_          85 GKLNILVNNA   94 (259)
T ss_dssp             TCCCEEEECC
T ss_pred             CCceEEEECC
Confidence            3689999884

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.26  E-value=0.26  Score=42.74  Aligned_cols=82  Identities=11%  Similarity=0.116  Sum_probs=56.7

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      |+.+|=-|.+.|.   ++..|++.|++|+.++++++-++.+.+.+...+ ++..+.+|+.+.+--+...+...  ...+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV--ERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            5566777876655   556677789999999999998888777776544 78899999987543222211111  13467


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            89999873

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.22  E-value=0.14  Score=41.10  Aligned_cols=51  Identities=25%  Similarity=0.281  Sum_probs=40.9

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+..++++++++||=+|+|. |.++..+++. |++|+++|.+++-.+.+++.
T Consensus        18 ~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          18 KGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            344567888999999999984 6666667765 88999999999999888764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.15  Score=44.42  Aligned_cols=82  Identities=17%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~  215 (371)
                      +|+++|=-|.+.|.   ++..|++.|++|+.++++++-++.+.+.+... +++..+.+|+.+.+--+. .....+   ..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~---~~   86 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS---KL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence            57899988877665   45566667999999999999888887777654 478889999987543221 111222   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|.
T Consensus        87 g~iDilvnnA   96 (255)
T d1fmca_          87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEeeeCC
Confidence            5789999884

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.08  E-value=0.11  Score=42.58  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=43.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          131 DQLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       131 ~~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      -..++.++++++++||=+|||. |.++..+++. |+ +|+++|.++.-.+.+++.
T Consensus        17 ~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          17 FHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             HHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            3446778899999999999996 7888888886 65 799999999999988764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.05  E-value=0.15  Score=42.31  Aligned_cols=87  Identities=13%  Similarity=0.072  Sum_probs=59.2

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450          131 DQLAAAAA-VQEGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (371)
Q Consensus       131 ~~i~~~l~-~~~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~  206 (371)
                      ..+.+.+. .-++++||=.|.+.|.   ++..+++.|++|+.++++++-.+.+.+.+....++.+...|..+...-   .
T Consensus        11 ~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~   87 (191)
T d1luaa1          11 ALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR---A   87 (191)
T ss_dssp             HHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHH---H
T ss_pred             HHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHH---H
Confidence            34444443 3478999999976554   566777789999999999988887777765544566677776654321   1


Q ss_pred             hHHHhhccCCCeeEEEecCC
Q 017450          207 SLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       207 ~l~~~~~~~~~~d~VVaNlP  226 (371)
                      +      .-+..|++|.|-+
T Consensus        88 ~------~~~~iDilin~Ag  101 (191)
T d1luaa1          88 E------AVKGAHFVFTAGA  101 (191)
T ss_dssp             H------HTTTCSEEEECCC
T ss_pred             H------HhcCcCeeeecCc
Confidence            1      1245799998854

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.80  E-value=0.3  Score=42.33  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=54.9

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .+|=-|++.|.   ++..|++.|++|+.++++++-++.+.+.+... +++..+.+|+.+.+--+...+...  ...+..|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR--KTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHhCCcc
Confidence            34666876554   55666778999999999999888877777654 478889999987543222221111  1246789


Q ss_pred             EEEecC
Q 017450          220 KVVANI  225 (371)
Q Consensus       220 ~VVaNl  225 (371)
                      ++|.|-
T Consensus        81 ilVnnA   86 (255)
T d1gega_          81 VIVNNA   86 (255)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.73  E-value=0.28  Score=42.76  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      +++++|=-|++.|.   ++..|++.|++|+.++++++-++.+.+.+... +++..+.+|+.+.+--+... ...+.  ..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~~   84 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM--FG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH--HT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH--hC
Confidence            58899999988775   66677778999999999998887777766543 47888999987644222111 11111  12


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      +..|++|.|...
T Consensus        85 g~idilvnnAG~   96 (259)
T d1xq1a_          85 GKLDILINNLGA   96 (259)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCcccccccccc
Confidence            568999988654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.26  Score=42.72  Aligned_cols=79  Identities=19%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      +|+++|=-|++.|.   ++..|++.|++|+.+|++++.++.+.+..   ++...+.+|+.+.+--+. .....+   ..+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~---~~g   78 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIR---RFG   78 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEccCCCHHHHHHHHHHHHH---hcC
Confidence            58899999987774   56667778999999999998877776654   478888999877543221 112222   235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~iDilVnnA   87 (250)
T d1ydea1          79 RLDCVVNNA   87 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEecc
Confidence            689999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.3  Score=42.27  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh-hhhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS-HMLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~-~~~~l~~~~~  213 (371)
                      .|+++|=-|++.|.   ++..|++.|++|+.++++++-.+.+.+.+...   .++..+.+|+.+..--+ ......+   
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD---   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH---
Confidence            47889999987665   45666677999999999998887777666432   27888899998754322 1112221   


Q ss_pred             cCCCeeEEEecCCC
Q 017450          214 SSSGFAKVVANIPF  227 (371)
Q Consensus       214 ~~~~~d~VVaNlPy  227 (371)
                      ..+..|++|.|--.
T Consensus        79 ~~G~iDilVnnAg~   92 (254)
T d2gdza1          79 HFGRLDILVNNAGV   92 (254)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCcCeecccccc
Confidence            23678999988644

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.37  Score=38.92  Aligned_cols=49  Identities=10%  Similarity=0.093  Sum_probs=39.4

Q ss_pred             HHHhcCCCCCEEEEEcCc--ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~G--~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .+...++++++||=.|+|  .|.....+++. |++|++++.+++-.+.+++.
T Consensus        21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc
Confidence            344567889999999665  56677777775 89999999999999988865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.50  E-value=0.23  Score=43.51  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      +|+++|=.|++.|.   ++..|++.|++|+.++++++-++.+.+.+...    .++..+.+|+.+..--+. .....+  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~--   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK--   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH--
Confidence            57889999988774   56677778999999999999888887777543    268889999987543221 112221  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|.
T Consensus        82 -~~g~iDilvnnA   93 (272)
T d1xkqa_          82 -QFGKIDVLVNNA   93 (272)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -HhCCceEEEeCC
Confidence             235789999883

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.46  E-value=0.3  Score=42.25  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      +|+++|=-|++.|.   ++..|++.|++|+.++++++-++.+.+.+.  ++...+.+|+.+.+--+ ......+   ..+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   79 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVT---AFG   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--CcceEEEeecCCHHHHHHHHHHHHH---HhC
Confidence            67899999988774   666777889999999999988887777664  37788899987754221 1112221   235


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|--
T Consensus        80 ~idilinnAG   89 (244)
T d1nffa_          80 GLHVLVNNAG   89 (244)
T ss_dssp             CCCEEEECCC
T ss_pred             CCeEEEECCc
Confidence            6899998853

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.31  E-value=0.22  Score=39.91  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=49.5

Q ss_pred             EEEEEcCc--ccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450          144 IVLEIGPG--TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (371)
Q Consensus       144 ~VLEIG~G--~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V  221 (371)
                      +|.=||+|  -+.++..|.+.|.+|++.|++++.++.+++.-    .+.....+...                -...|+|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~----~~~~~~~~~~~----------------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ----LVDEAGQDLSL----------------LQTAKII   61 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----SCSEEESCGGG----------------GTTCSEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh----ccceeeeeccc----------------ccccccc
Confidence            56678887  34466777778999999999999888776642    11111111111                1346788


Q ss_pred             EecCCCcccHHHHHHhcc
Q 017450          222 VANIPFNISTDVIKQLLP  239 (371)
Q Consensus       222 VaNlPy~iss~il~~Ll~  239 (371)
                      +-..|......++..+.+
T Consensus        62 ilavp~~~~~~vl~~l~~   79 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIP   79 (165)
T ss_dssp             EECSCHHHHHHHHHHHGG
T ss_pred             cccCcHhhhhhhhhhhhh
Confidence            877786666677777654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.23  E-value=0.24  Score=43.52  Aligned_cols=82  Identities=12%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      +|+++|=-|++.|.   .+..|++.|++|+.++++++-++.+.+.+...    .++..+.+|+.+.+--+. .....+  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA--   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH--
Confidence            57889988988775   56677778999999999998888777766543    268899999887543221 112221  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|.
T Consensus        81 -~~G~iDilVnnA   92 (274)
T d1xhla_          81 -KFGKIDILVNNA   92 (274)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -HcCCceEEEeec
Confidence             235789999873

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.36  Score=41.52  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .|+++|=.|.+.|.   ++..|++.|++|+.++++++-++.+.+..   +++..+..|+.+.+.   ...+++   .-++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~---v~~~~~---~~g~   76 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEA---TERALG---SVGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHH---HHHHHT---TCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHH---HHHHHH---HhCC
Confidence            68899999988774   66777778999999999998777666554   467888889876532   222332   3467


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        77 iDilVnnA   84 (244)
T d1pr9a_          77 VDLLVNNA   84 (244)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999884

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.37  Score=41.44  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~  216 (371)
                      +|+++|=-|.+.|.   ++..|++.|++|+.++++++.++.+.+.+..  +...+.+|..+.+-- .......+   ..+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA--NGKGLMLNVTDPASIESVLEKIRA---EFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG--GEEEEECCTTCHHHHHHHHHHHHH---HTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC--CCcEEEEEecCHHHhhhhhhhhhc---ccC
Confidence            57788888877664   5667777899999999999988877776643  677888998764422 22222222   346


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        78 ~iDilVnnA   86 (243)
T d1q7ba_          78 EVDILVNNA   86 (243)
T ss_dssp             SCSEEEECC
T ss_pred             Ccceehhhh
Confidence            789999874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.00  E-value=0.27  Score=42.85  Aligned_cols=82  Identities=11%  Similarity=0.166  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhh-hhhHHHhh
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSH-MLSLFERR  212 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~-~~~l~~~~  212 (371)
                      +++.+|=.|++.|.   ++..|++.|++|+.++++++.++.+.+.+...    .++..+.+|+.+..--+. .....+  
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~--   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG--   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH--
Confidence            57888888887665   55667778999999999999888777766433    268899999976543221 212221  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                       ..+..|++|.|.
T Consensus        82 -~~g~iDilvnnA   93 (264)
T d1spxa_          82 -KFGKLDILVNNA   93 (264)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -HhCCCCEeeccc
Confidence             236789999884

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.84  E-value=0.3  Score=42.45  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhh-hhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSH-MLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~-~~~l~~~~~  213 (371)
                      +|+++|=-|++.|.   ++..|++.|++|+.++++++-++.+.+.+..   ..++..+.+|+.+.+--+. .....+   
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~---   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE---   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH---
Confidence            57889989987775   5777788899999999999888776665532   2367888999877543221 111221   


Q ss_pred             cCCCeeEEEec
Q 017450          214 SSSGFAKVVAN  224 (371)
Q Consensus       214 ~~~~~d~VVaN  224 (371)
                      ..+..|++|.|
T Consensus        80 ~~G~iDiLVnn   90 (258)
T d1iy8a_          80 RFGRIDGFFNN   90 (258)
T ss_dssp             HHSCCSEEEEC
T ss_pred             HhCCCCEEEEC
Confidence            23678999987

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.75  E-value=0.27  Score=42.67  Aligned_cols=81  Identities=15%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      +|+++|=.|.+.|.   ++..|++.|++|+.++++++.++.+.+.+.  .+...+.+|+.+..--+...+...  ...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g~   80 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQ--RRLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHH--HHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            57889988987663   566677789999999999988887776664  367788899876543222222211  12367


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        81 iDilVnnA   88 (253)
T d1hxha_          81 LNVLVNNA   88 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCeEEecc
Confidence            89999884

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.72  E-value=0.36  Score=41.94  Aligned_cols=80  Identities=16%  Similarity=0.104  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~  216 (371)
                      +|+++|=.|.+.|.   ++..|++.|++|+.++++++-.+.+.+.+.  +++..+.+|+.+.+--+ ......+   ..+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   78 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYARE---EFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHHH---HcC
Confidence            67899999988774   567777789999999999887766655543  37889999998654222 1222222   235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~iDilVnnA   87 (254)
T d1hdca_          79 SVDGLVNNA   87 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CccEEEecC
Confidence            789999884

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.40  E-value=0.4  Score=41.20  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      +++++|=-|++.|.   ++..|++.|++|+.++++++-++.+.+.+    +.+.+.+|+.+.+--+. .....+   ..+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   76 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALA---HLG   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHH---hcC
Confidence            57889999987764   45666777999999999998877766544    56778899876543221 112222   235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        77 ~iDilVnnA   85 (242)
T d1ulsa_          77 RLDGVVHYA   85 (242)
T ss_dssp             SCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.34  E-value=0.36  Score=41.53  Aligned_cols=85  Identities=16%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      +|+++|=-|+    |.|. .+..|++.|++|+..+.+++..+.+.+.....++...+.+|..+..--+...+...  ...
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK--EAF   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHH--Hhc
Confidence            6789999995    4665 67778888999999999988877777666555677888999887543222111111  123


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      +..|++|.|.-+
T Consensus        85 g~iDilVnnag~   96 (256)
T d1ulua_          85 GGLDYLVHAIAF   96 (256)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            678999987644

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.27  E-value=0.36  Score=41.82  Aligned_cols=81  Identities=14%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~~  216 (371)
                      +|+++|=-|.+.|.   .+..|++.|++|+.++++++-++.+.+.+.  +++..+.+|+.+.+--+.. ....+   ..+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~~---~~g   78 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELLD---RWG   78 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHHH---HhC
Confidence            57889999988774   566777789999999999988777766653  4788889999775432211 11221   236


Q ss_pred             CeeEEEecCC
Q 017450          217 GFAKVVANIP  226 (371)
Q Consensus       217 ~~d~VVaNlP  226 (371)
                      ..|++|.|.-
T Consensus        79 ~iDilVnnAg   88 (256)
T d1k2wa_          79 SIDILVNNAA   88 (256)
T ss_dssp             CCCEEEECCC
T ss_pred             CccEEEeecc
Confidence            7899998853

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.22  E-value=0.45  Score=41.63  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~  216 (371)
                      +|++||=-|.+.|.   ++..|++.|++|+.++++++-++.+.+.+.  +++..+.+|..+.+.-+. .....+   ..+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~---~~g   78 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG--DNVLGIVGDVRSLEDQKQAASRCVA---RFG   78 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeeEEecccccHHHHHHHHHHHHH---HhC
Confidence            57899999987665   556667779999999999987776666553  378889999887543221 112222   236


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        79 ~idilvnnA   87 (276)
T d1bdba_          79 KIDTLIPNA   87 (276)
T ss_dssp             CCCEEECCC
T ss_pred             Ccccccccc
Confidence            789998773

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.13  E-value=0.54  Score=38.47  Aligned_cols=87  Identities=14%  Similarity=0.258  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          141 EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       141 ~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ++.+|+=||+|. |..+...+.. |++|+++|.+.+..+.++..+..  +++....+-..+.      +.+      ...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~------~~~------~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE------TAV------AEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH------HHH------HTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH------Hhh------ccC
Confidence            567999999996 5566666654 89999999999999988887754  5555544433321      111      347


Q ss_pred             eEEEec-------CCCcccHHHHHHhccCC
Q 017450          219 AKVVAN-------IPFNISTDVIKQLLPMG  241 (371)
Q Consensus       219 d~VVaN-------lPy~iss~il~~Ll~~g  241 (371)
                      |+||+-       .|.-|+.+.+..+.++.
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GS  126 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGS  126 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTC
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCc
Confidence            888875       36677777777666654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.10  E-value=0.56  Score=40.22  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .|+++|=.|.+.|.   ++..|++.|++|+.++++++-++.+.+..   +++..+..|..+.+.   ....++   ..+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~---v~~~~~---~~g~   74 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDA---TEKALG---GIGP   74 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHH---HHHHHT---TCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHH---HHHHHH---HcCC
Confidence            57899989987764   56667778999999999988766665544   468888889877542   222332   3467


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|-
T Consensus        75 iDilVnnA   82 (242)
T d1cyda_          75 VDLLVNNA   82 (242)
T ss_dssp             CSEEEECC
T ss_pred             CeEEEECC
Confidence            89999874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.00  E-value=0.41  Score=42.00  Aligned_cols=85  Identities=20%  Similarity=0.276  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCccc---HHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      +|+++|=-|++.|   ..+..|++.|++|+.+++++.-.+.+.+.+..  ..++..+.+|..+.+--+.......  ...
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI--KVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhh--hhc
Confidence            6789999998777   35667777899999999998877665554432  2377888999887543221111111  234


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      +..|++|.|.-.
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            678999987543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.92  E-value=0.56  Score=37.11  Aligned_cols=85  Identities=18%  Similarity=0.216  Sum_probs=50.9

Q ss_pred             CCEEEEEcCc-ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450          142 GDIVLEIGPG-TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (371)
Q Consensus       142 ~~~VLEIG~G-~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d  219 (371)
                      .++||=||+| .|. ++..|++.|.+|+.+|++.+-+..+.+.+   +.......+.......+   ..      ....|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~---~~~~~~~~~~~~~~~~~---~~------i~~~~   69 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV---QHSTPISLDVNDDAALD---AE------VAKHD   69 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC---TTEEEEECCTTCHHHHH---HH------HTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc---cccccccccccchhhhH---hh------hhccc
Confidence            4688889986 344 34455556889999999999877766554   34444443333221111   11      13467


Q ss_pred             EEEecCCCcccHHHHHHhc
Q 017450          220 KVVANIPFNISTDVIKQLL  238 (371)
Q Consensus       220 ~VVaNlPy~iss~il~~Ll  238 (371)
                      .+++..|+.....+...+.
T Consensus        70 ~~i~~~~~~~~~~~~~~~~   88 (182)
T d1e5qa1          70 LVISLIPYTFHATVIKSAI   88 (182)
T ss_dssp             EEEECSCGGGHHHHHHHHH
T ss_pred             eeEeeccchhhhHHHHHHH
Confidence            7888888766555544333

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.79  E-value=0.12  Score=40.05  Aligned_cols=67  Identities=16%  Similarity=0.196  Sum_probs=42.7

Q ss_pred             EEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450          145 VLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (371)
Q Consensus       145 VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~  220 (371)
                      ++=+|+  |.++..++    +.|.+|+.+|.|++.++.++..     ...++.||+.+.+.-..        ......+.
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~--------a~i~~a~~   67 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----ATHAVIANATEENELLS--------LGIRNFEY   67 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHH--------HTGGGCSE
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhc--------cCCccccE
Confidence            344555  55555554    4588999999999999887533     34678899877543211        11234677


Q ss_pred             EEecCC
Q 017450          221 VVANIP  226 (371)
Q Consensus       221 VVaNlP  226 (371)
                      ++..+|
T Consensus        68 vi~~~~   73 (134)
T d2hmva1          68 VIVAIG   73 (134)
T ss_dssp             EEECCC
T ss_pred             EEEEcC
Confidence            776665

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.79  E-value=0.21  Score=40.94  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=41.4

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      ++....+++|++||=+|||. |.++..+++. |+ .|+++|.+++-.+.+++.
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            44566788999999999997 7788888876 65 799999999988888775

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.77  E-value=0.46  Score=41.00  Aligned_cols=83  Identities=14%  Similarity=0.226  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhc-cC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~-~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      +++++|=-|.+.|.   .+..|++.|++|+.++++++-.+.+.+.+. .. .++..+.+|+.+.+--+...+...  ...
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK--EKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            57899999987764   566777789999999999887765554442 22 377888999987543222111111  123


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        82 g~iDiLVnnA   91 (251)
T d1vl8a_          82 GKLDTVVNAA   91 (251)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.67  E-value=0.48  Score=40.94  Aligned_cols=84  Identities=20%  Similarity=0.221  Sum_probs=58.3

Q ss_pred             CCCCEEEEEcCccc---HHHHHHHHhCCeEEE-EeCCHHHHHHHHHHhccCC-CeEEEEcccccchhh-hhhhhHHHhhc
Q 017450          140 QEGDIVLEIGPGTG---SLTNVLLNAGATVLA-IEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIR-SHMLSLFERRK  213 (371)
Q Consensus       140 ~~~~~VLEIG~G~G---~lt~~La~~~~~V~a-IE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~-~~~~~l~~~~~  213 (371)
                      ..|++||=.|.+.|   .++..|++.|++|+. ...+++..+.+.+.+...+ ++..+.+|+.+..-- .......+   
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~---   80 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS---   80 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH---
Confidence            46889998887766   466777778999876 5678888888777776654 888999999764322 11222221   


Q ss_pred             cCCCeeEEEecCC
Q 017450          214 SSSGFAKVVANIP  226 (371)
Q Consensus       214 ~~~~~d~VVaNlP  226 (371)
                      ..+..|++|.|.-
T Consensus        81 ~~g~idilinnag   93 (259)
T d1ja9a_          81 HFGGLDFVMSNSG   93 (259)
T ss_dssp             HHSCEEEEECCCC
T ss_pred             HcCCCcEEEeccc
Confidence            2367899998853

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.50  E-value=0.43  Score=41.54  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~  214 (371)
                      +|+++|=.|.+.|.   ++..|++.|++|+.++++ ++..+.+.+.+... +++..+.+|+.+.+.-+. .....+   .
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~---~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK---E   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            57889988887774   566777789999999987 44566665555544 377888999987543221 112222   2


Q ss_pred             CCCeeEEEecC
Q 017450          215 SSGFAKVVANI  225 (371)
Q Consensus       215 ~~~~d~VVaNl  225 (371)
                      .+..|++|.|.
T Consensus        83 ~G~iDiLVnnA   93 (261)
T d1geea_          83 FGKLDVMINNA   93 (261)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCEeeccc
Confidence            35789999884

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.47  E-value=0.57  Score=40.10  Aligned_cols=81  Identities=11%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~  217 (371)
                      .|+++|=.|++.|.   ++..|++.|++|+.++++.+-++.+.+.+.  +++..+++|+.+.+--+...+.+.  ...+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~--~~~g~   79 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEAL--EEFGR   79 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            67899999988765   556666779999999999987766655443  478888999986543221111111  12256


Q ss_pred             eeEEEecC
Q 017450          218 FAKVVANI  225 (371)
Q Consensus       218 ~d~VVaNl  225 (371)
                      .|++|.|.
T Consensus        80 iDiLinnA   87 (241)
T d2a4ka1          80 LHGVAHFA   87 (241)
T ss_dssp             CCEEEEGG
T ss_pred             ccEecccc
Confidence            89999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.66  Score=41.09  Aligned_cols=82  Identities=15%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhh-hhhHHH
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSH-MLSLFE  210 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~-~~~l~~  210 (371)
                      +|+++|=.|++.|.   ++..|++.|++|+.++++++-++.+.+.+..      ..++..+.+|+.+.+--.. .....+
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            68899999987775   4566677799999999998877666554432      1378888999987543221 111221


Q ss_pred             hhccCCCeeEEEecC
Q 017450          211 RRKSSSGFAKVVANI  225 (371)
Q Consensus       211 ~~~~~~~~d~VVaNl  225 (371)
                         ..+..|++|.|-
T Consensus        91 ---~~G~iDiLVnnA  102 (297)
T d1yxma1          91 ---TFGKINFLVNNG  102 (297)
T ss_dssp             ---HHSCCCEEEECC
T ss_pred             ---HhCCeEEEEeec
Confidence               235689999874

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.49  Score=41.14  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             CCEE-EEEcCcccH---HHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          142 GDIV-LEIGPGTGS---LTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       142 ~~~V-LEIG~G~G~---lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      |++| |==|++.|.   ++..|++. |++|+.++++++-.+.+.+.+... +++.++.+|..+.+--....+.+.  ...
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~--~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR--KEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHH--Hhc
Confidence            4555 444665554   45567776 789999999999888887777644 488999999987653222222111  123


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        80 g~iDiLVnNA   89 (275)
T d1wmaa1          80 GGLDVLVNNA   89 (275)
T ss_dssp             SSEEEEEECC
T ss_pred             CCcEEEEEcC
Confidence            6799999883

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.25  Score=39.96  Aligned_cols=49  Identities=24%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             HHHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .....++++++||=.|+  |.|.++..+++. |++|++++.+++-.+.+++.
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc
Confidence            44556789999999996  577788888875 88999999998888887754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.43  Score=38.32  Aligned_cols=51  Identities=22%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+...++++|++||=+|+|. |.++..+++. |+++++++.+++-.+.+++.
T Consensus        21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            344567889999999999874 6677777775 88999999998877877754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.69  E-value=0.68  Score=39.85  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450          140 QEGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (371)
Q Consensus       140 ~~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~  215 (371)
                      .+|+++|=-|.+.|.   ++..|++.|++|+.++++++..+.+++.     +...+..|+.+.+--+ ......+   ..
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~---~~   74 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAAY---AL   74 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHH---hc
Confidence            368899999987665   4566777899999999998876655433     4567888987654322 1222222   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        75 G~iDiLVnnA   84 (248)
T d2d1ya1          75 GRVDVLVNNA   84 (248)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCeEEEeC
Confidence            6789999873

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.57  Score=37.57  Aligned_cols=51  Identities=25%  Similarity=0.345  Sum_probs=40.0

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+...+++++++||=+|+|. |.++..+++. |+ +|+++|.++.-.+.|++.
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            345567888999999999985 4455556654 76 899999999999998765

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=89.22  E-value=0.15  Score=44.74  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=31.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeC
Q 017450          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEK  171 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~  171 (371)
                      .|.+...+.++.+|+|+|||.|.-+..++...  ..|.|+++
T Consensus        57 ~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          57 WFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            34444456677899999999999999999763  47888887

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.19  E-value=0.45  Score=41.18  Aligned_cols=85  Identities=19%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHh-ccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF-ASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~-~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      +|+++|=-|.+.|.   ++..|++.|++|+.++++++-...+.+.+ +.. .++..+.+|+.+.+--+...+...  ...
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID--ADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            57899999987664   56667778999999999976555444433 222 378889999987543222221111  134


Q ss_pred             CCeeEEEecCCC
Q 017450          216 SGFAKVVANIPF  227 (371)
Q Consensus       216 ~~~d~VVaNlPy  227 (371)
                      +..|++|.|...
T Consensus        86 g~iDilVnnAg~   97 (260)
T d1h5qa_          86 GPISGLIANAGV   97 (260)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCcEecccccc
Confidence            679999988543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.04  E-value=0.84  Score=33.50  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             CCCEEEEEc---CcccHHHHHHHHhCCeEEEEeCCH-HHHHHHHHHhccCCCeEEEEccccc
Q 017450          141 EGDIVLEIG---PGTGSLTNVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQEDFVK  198 (371)
Q Consensus       141 ~~~~VLEIG---~G~G~lt~~La~~~~~V~aIE~d~-~~i~~a~~~~~~~~~v~vi~gD~~~  198 (371)
                      ..++|.=||   +|.+.++..|.+.|.+|+|-|... ...+.+.+.     .+.+..++..+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~-----Gi~v~~g~~~~   63 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQA-----GAKIYIGHAEE   63 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHT-----TCEEEESCCGG
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHC-----CCeEEECCccc
Confidence            456777775   344456777888899999999863 333444332     56666665543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.98  E-value=0.74  Score=39.91  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~  214 (371)
                      +|+++|=-|++.|.   ++..|++.|++|+.++.+ ++.++.+.+.+... .++..+.+|..+..-- .......+   .
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~---~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK---I   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH---H
Confidence            67899999998875   667777889999999986 56666666655544 4788889998774322 11112222   2


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|++|.|...
T Consensus        94 ~g~idilV~nag~  106 (272)
T d1g0oa_          94 FGKLDIVCSNSGV  106 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCcccccccc
Confidence            3568999988543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.56  Score=40.68  Aligned_cols=82  Identities=15%  Similarity=0.218  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~  215 (371)
                      +|+++|=.|++.|.   ++..|++.|++|+.++++++-++.+.+.... . ..+.....|..+........+...  ...
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG--KLM   90 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH--HHh
Confidence            68899999998886   5667777899999999999988877665432 2 356777777765443322221111  123


Q ss_pred             CCeeEEEec
Q 017450          216 SGFAKVVAN  224 (371)
Q Consensus       216 ~~~d~VVaN  224 (371)
                      +..|+++.|
T Consensus        91 g~~~~li~n   99 (269)
T d1xu9a_          91 GGLDMLILN   99 (269)
T ss_dssp             TSCSEEEEC
T ss_pred             CCccccccc
Confidence            557777766

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=88.66  E-value=0.75  Score=39.55  Aligned_cols=85  Identities=19%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      +|+++|=.|.    |.|. .+..|++.|++|+.+++++...+.+++.....+...+...|..+..-.. ......   ..
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~   80 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVK---KD   80 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHH---HH
Confidence            6889999984    4665 5677777899999999998766666555444456667777776543221 111222   13


Q ss_pred             CCCeeEEEecCCCc
Q 017450          215 SSGFAKVVANIPFN  228 (371)
Q Consensus       215 ~~~~d~VVaNlPy~  228 (371)
                      .+..|++|.|..+.
T Consensus        81 ~g~id~lV~nag~~   94 (274)
T d2pd4a1          81 LGSLDFIVHSVAFA   94 (274)
T ss_dssp             TSCEEEEEECCCCC
T ss_pred             cCCCCeEEeecccc
Confidence            46789999886543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.50  E-value=0.38  Score=44.79  Aligned_cols=48  Identities=15%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC
Q 017450          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI  186 (371)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~  186 (371)
                      ..+++.++|||+=.|..+..++..    ..+|+++|.++...+.+++++..+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            457789999999999988877653    358999999999999999987643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.26  E-value=0.82  Score=36.13  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .+...+++++++||=.|+|. |.++..+++. |++|++++.+++-.+.+++.
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            44566788999999999986 4455555554 78999999999999988774

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.17  E-value=0.74  Score=39.48  Aligned_cols=80  Identities=9%  Similarity=0.079  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~  215 (371)
                      +++.+|=.|.+.|.   ++..|++.|++|+.+++++.-  .+.+..+.. +++..+.+|+.+.+--+... ...+   ..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~---~~   78 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIS---TF   78 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHH---Hc
Confidence            57889989987664   566777789999999987642  222222222 37889999998754322221 1221   23


Q ss_pred             CCeeEEEecC
Q 017450          216 SGFAKVVANI  225 (371)
Q Consensus       216 ~~~d~VVaNl  225 (371)
                      +..|++|.|-
T Consensus        79 G~iDilVnnA   88 (247)
T d2ew8a1          79 GRCDILVNNA   88 (247)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            6789999884

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.00  E-value=0.39  Score=41.17  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             CEEEEEcCcccH---HHHHHH---HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          143 DIVLEIGPGTGS---LTNVLL---NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La---~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      ++||=-|++.|.   ++..|+   +.|.+|+.+.++++-.+.+++.....+++.++..|+.+.+--+...+.++.....+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            468877876664   233333   24779999999988777666655555689999999987543322222221111235


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        83 ~iDiLvnNA   91 (248)
T d1snya_          83 GLNVLFNNA   91 (248)
T ss_dssp             CCSEEEECC
T ss_pred             CcceEEeec
Confidence            689999883

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.93  E-value=0.45  Score=38.78  Aligned_cols=51  Identities=12%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-C-CeEEEEeCCHHHHHHHHHHh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~  183 (371)
                      ++...+++++++||=+|+|... ++..+++. | .+|+++|.+++-++.|++.-
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            4455678899999999998644 44555554 5 58999999999999998874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.92  E-value=0.47  Score=38.12  Aligned_cols=50  Identities=14%  Similarity=0.195  Sum_probs=38.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcccHHHH-HHHHh--CCeEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGSLTN-VLLNA--GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~lt~-~La~~--~~~V~aIE~d~~~i~~a~~~  182 (371)
                      +.+..+++++++||=+|+|.+.+.. .++..  +.+|+++|.+++-.+.+++.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            4456678899999999999855443 34443  45899999999988888864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.85  E-value=0.48  Score=36.30  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=45.0

Q ss_pred             CcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450          150 PGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (371)
Q Consensus       150 ~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP  226 (371)
                      ||.|..+..+++.  +.+|+.||.|+...+.++..     ++.++.||+.+-..-.       . ..-...+.++...+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~~L~-------~-a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVSDLE-------K-ANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHHHHH-------H-TTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHHHHH-------H-hhhhcCcEEEEecc
Confidence            5778889999885  66899999999988877543     6889999998753211       1 12345666665544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=1.3  Score=37.66  Aligned_cols=84  Identities=23%  Similarity=0.219  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhcc
Q 017450          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (371)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~  214 (371)
                      .|++||=.|++    .|. .+..|++.|++|+.++++++..+.+.+.....++......|..+..-.. ......   ..
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   80 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG---KV   80 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH---TT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh---hc
Confidence            68899999874    443 6778888899999999998887777776665566667777765533211 111111   23


Q ss_pred             CCCeeEEEecCCC
Q 017450          215 SSGFAKVVANIPF  227 (371)
Q Consensus       215 ~~~~d~VVaNlPy  227 (371)
                      .+..|.+|.|..+
T Consensus        81 ~~~~d~~v~~a~~   93 (258)
T d1qsga_          81 WPKFDGFVHSIGF   93 (258)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             ccccceEEEeecc
Confidence            4678888888644

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.42  E-value=0.58  Score=40.43  Aligned_cols=82  Identities=16%  Similarity=0.157  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHhcc--CCCeEEEEcccccchhhhh-hhhHHHhhc
Q 017450          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSH-MLSLFERRK  213 (371)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~-~~~l~~~~~  213 (371)
                      +|+++|=-|++.|.   .+..|++.|++|+.++++ ++..+.+.+.+..  ..++..+.+|+.+.+--+. .....+   
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~---   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR---   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH---
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---
Confidence            57888888887775   566777889999999986 5666666555432  2378888999987543221 111221   


Q ss_pred             cCCCeeEEEecC
Q 017450          214 SSSGFAKVVANI  225 (371)
Q Consensus       214 ~~~~~d~VVaNl  225 (371)
                      ..+..|++|.|-
T Consensus        80 ~~G~iDiLVnnA   91 (260)
T d1x1ta1          80 QMGRIDILVNNA   91 (260)
T ss_dssp             HHSCCSEEEECC
T ss_pred             HhCCCcEEEeec
Confidence            236789999884

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.42  E-value=2.2  Score=33.73  Aligned_cols=50  Identities=14%  Similarity=0.276  Sum_probs=37.7

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~  182 (371)
                      +.+..++++|++||=.|+|. |.++..+++. | ..|+++|.+++-.+.+++.
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            34556788999999998873 3455555554 6 5799999999998888865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.12  E-value=0.74  Score=37.10  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      +...++++++++||=+|||. |.++..+++. |+ .|+++|.++.-.+.+++.
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            45566788999999999985 4455666654 65 678899999999998865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.05  E-value=1  Score=35.83  Aligned_cols=51  Identities=18%  Similarity=0.371  Sum_probs=40.4

Q ss_pred             HHHHHhcCCCCCEEEEEcC--cccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+...+++++++||=+|+  |.|.++..+++. + .+|+++|.+++-.+.+++.
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            3456678889999999997  366667766664 5 5899999999999988875

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.55  E-value=1.5  Score=37.17  Aligned_cols=80  Identities=11%  Similarity=0.107  Sum_probs=54.0

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCe-------EEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhh
Q 017450          144 IVLEIGPGTGS---LTNVLLNAGAT-------VLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERR  212 (371)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~-------V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~  212 (371)
                      .||=-|++.|.   ++..|++.|++       |+.++++++-++.+.+.+...+ ++..+.+|..+..--+...+...  
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV--   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH--
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--
Confidence            35666877765   55667777876       9999999998888777776543 77888999987543222221111  


Q ss_pred             ccCCCeeEEEecC
Q 017450          213 KSSSGFAKVVANI  225 (371)
Q Consensus       213 ~~~~~~d~VVaNl  225 (371)
                      ...+..|++|.|-
T Consensus        81 ~~~g~iDilvnnA   93 (240)
T d2bd0a1          81 ERYGHIDCLVNNA   93 (240)
T ss_dssp             HHTSCCSEEEECC
T ss_pred             HHcCCcceeeccc
Confidence            1346789999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=0.95  Score=35.48  Aligned_cols=73  Identities=15%  Similarity=0.068  Sum_probs=44.2

Q ss_pred             CEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       143 ~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      ++|+=+|+  |..+..++    +.+.+|+.||.|++......+.... .++.++.||+.+-..-.       . ......
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~-------~-a~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLK-------K-AGIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHH-------H-HTTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHH-------H-hccccC
Confidence            35666666  45555444    4588999999998754433333221 37899999998754311       1 133456


Q ss_pred             eEEEecCC
Q 017450          219 AKVVANIP  226 (371)
Q Consensus       219 d~VVaNlP  226 (371)
                      +.+|.-.+
T Consensus        73 ~~vi~~~~   80 (153)
T d1id1a_          73 RAILALSD   80 (153)
T ss_dssp             SEEEECSS
T ss_pred             CEEEEccc
Confidence            77776554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.36  E-value=0.61  Score=37.83  Aligned_cols=50  Identities=20%  Similarity=0.174  Sum_probs=38.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~-~~-~V~aIE~d~~~i~~a~~~  182 (371)
                      +++..+++++++||=+|||... ++..+++. |+ +|+++|.+++-.+.+++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            4456678899999999998644 44555554 64 899999999999999865

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=84.35  E-value=0.41  Score=42.22  Aligned_cols=79  Identities=10%  Similarity=0.008  Sum_probs=64.0

Q ss_pred             EEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (371)
Q Consensus       146 LEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl  225 (371)
                      +..-||+-.++..+++...+++.+|..+.-.+.+++++....++++.+.|..+.-...     +   .+.+.--.|+-++
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~al-----l---PP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNAL-----L---PPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHH-----C---SCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHHhh-----C---CCCCCceEEEecC
Confidence            3678999999999998888999999999999999999887679999999987753221     1   2334566888899


Q ss_pred             CCcccHH
Q 017450          226 PFNISTD  232 (371)
Q Consensus       226 Py~iss~  232 (371)
                      ||.+.++
T Consensus       159 pYE~k~e  165 (271)
T d2oo3a1         159 SYERKEE  165 (271)
T ss_dssp             CCCSTTH
T ss_pred             CcCCHHH
Confidence            9988765

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.08  E-value=0.85  Score=38.89  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=51.7

Q ss_pred             CCEEEEEcCcccH---HHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450          142 GDIVLEIGPGTGS---LTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (371)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~  216 (371)
                      +++||=-|++.|.   ++..|++.|+  +|+++.++.+-++.+++..  ..++.++..|+.+..--+...+.+.+.....
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK--DSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC--CTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence            4788888887774   5566666675  7999999987666554332  2489999999987543222222221111223


Q ss_pred             CeeEEEecC
Q 017450          217 GFAKVVANI  225 (371)
Q Consensus       217 ~~d~VVaNl  225 (371)
                      ..|++|.|-
T Consensus        81 ~idilinnA   89 (250)
T d1yo6a1          81 GLSLLINNA   89 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CeEEEEEcC
Confidence            478999873

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.92  E-value=0.98  Score=36.26  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=37.6

Q ss_pred             HHHhcCCCCCEEEEEc--CcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          134 AAAAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       134 ~~~l~~~~~~~VLEIG--~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      .+...++++++||=.|  .|.|.++..+++. |++|+++..+++-.+.+++.
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~   69 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL   69 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc
Confidence            4455678899999987  3567778888875 89999998888777777653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.71  E-value=0.94  Score=32.82  Aligned_cols=40  Identities=10%  Similarity=0.233  Sum_probs=25.2

Q ss_pred             CcccHHHHHHHHhCCeEEEEeCCH-HHHHHHHHHhccCCCeEEEEc
Q 017450          150 PGTGSLTNVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQE  194 (371)
Q Consensus       150 ~G~G~lt~~La~~~~~V~aIE~d~-~~i~~a~~~~~~~~~v~vi~g  194 (371)
                      +|...++..|.++|.+|+|-|+.+ ...+.+++    . .+++..+
T Consensus        12 ~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~----~-Gi~i~~g   52 (89)
T d1j6ua1          12 IGMSAVALHEFSNGNDVYGSNIEETERTAYLRK----L-GIPIFVP   52 (89)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH----T-TCCEESS
T ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHH----C-CCeEEee
Confidence            344446777778899999999886 33343332    2 4556544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.51  E-value=1  Score=36.02  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCCEEEEEcCcccH-HHHHHHHh-C-CeEEEEeCCHHHHHHHHHHh
Q 017450          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRERF  183 (371)
Q Consensus       133 i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~  183 (371)
                      +.....+++|++||=+|+|.+. ++..++.. + .+|+++|.+++-.+.+++.-
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            4456678899999999997544 44444443 4 59999999999999888763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.21  E-value=2  Score=33.89  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             EEEEEcCcc-cH-HHHHHHHhC--CeEEEEeCCHHHHHHHHHH
Q 017450          144 IVLEIGPGT-GS-LTNVLLNAG--ATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       144 ~VLEIG~G~-G~-lt~~La~~~--~~V~aIE~d~~~i~~a~~~  182 (371)
                      +|+=||||. |. ++..|.+.+  .+|+++|.+++..+.+++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            578899985 43 555666665  4899999999999988875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.78  E-value=0.97  Score=36.34  Aligned_cols=51  Identities=22%  Similarity=0.192  Sum_probs=39.6

Q ss_pred             HHHHHhcCCCCCEEEEEcC--cccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450          132 QLAAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (371)
Q Consensus       132 ~i~~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~  182 (371)
                      ..+...+++++++||=.|.  |.|.++..+++. |++|++++.+++-.+.+++.
T Consensus        18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2          18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL   71 (171)
T ss_dssp             HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc
Confidence            3455677889999999884  346777777775 88999999998877777754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.07  E-value=2.5  Score=35.86  Aligned_cols=80  Identities=20%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             EEEEEcCcccH---HHHHHHHhCCeEEEEe-CCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450          144 IVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (371)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE-~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~  218 (371)
                      .||=-|.+.|.   .+..|++.|++|+..+ .+++..+.+.+.+... +++..+.+|+.+.+--+...+...  ...+..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI--DAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH--HHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH--HHcCCC
Confidence            45555666553   4456667799998765 4777777777666544 378888999987543222211111  134678


Q ss_pred             eEEEecC
Q 017450          219 AKVVANI  225 (371)
Q Consensus       219 d~VVaNl  225 (371)
                      |++|.|-
T Consensus        81 DiLVnnA   87 (244)
T d1edoa_          81 DVVVNNA   87 (244)
T ss_dssp             SEEEECC
T ss_pred             Ccccccc
Confidence            9999874