Citrus Sinensis ID: 017461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTVIS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHEHHHHHccccHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHcc
Coil and Loop (DISEMBL)
msaralfyspilqsppyisarNKLSraelrprglprlllgvlsgdrvcsfrvsvrdvksesynvsekSVKFEEALKDIALRsedlgvdseslvpwweefpkRWFIVVLCFSAFLLCNMDRVNMSIAIlpmsaefnwnpatvgliqssFFWGYLLTQIAggiwadtvggKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIgegvampamNNILSKWVPVAERSRSLALVYSGMYlgsvtglafspflihrfgwpsvfysfgslGTVWFTVWLSkahsspaedpqlrpaeKKLIVSscaskepvktipwglilskppvWALIVSHFCHNWGTFIlltwmptyynqvssfgsktlSETVQVCTTVIS
Flexible Loop (DISEMBL)
msaralfyspilqsppyisARNKLSRAELRPRGLPRlllgvlsgdrvcsfrvsvrdvksesynvseksvkfEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHsspaedpqlrpAEKKLIVSscaskepvktipwglilSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSfgsktlsetvqvcttvis
Low Complexity Region (SEG)
MSARALFYSPILQSPPYISARNKLSRAElrprglprlllgVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTVIS
Disordered region (IsUnstruct)
******FYSPIL******************PRGLPRLLLGVLSGDRVCSFRVSVRDVKS**YNV****VKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS*******************IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTV**
Disordered Region (DISOPRED)
***********************************************************************************************WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE****RP*********************GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTVIS
Disordered Region (DISEMBL)
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR**********EKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA**********RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTVIS
Disordered Region (DISPRO)
**A*ALFYSPILQSPPYISARNKLS*******************************************************************VPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTVIS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTTVIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
O82390	512	Sodium-dependent phosphat	yes	no	0.929	0.673	0.705	1e-137
Q652N5	591	Probable anion transporte	yes	no	0.873	0.548	0.689	1e-131
Q9SDI4	529	Probable anion transporte	no	no	0.716	0.502	0.836	1e-129
Q8GX78	541	Probable anion transporte	no	no	0.859	0.589	0.691	1e-129
Q3E9A0	517	Probable anion transporte	no	no	0.687	0.493	0.426	2e-55
Q66GI9	533	Probable anion transporte	no	no	0.684	0.476	0.424	1e-52
Q7XJR2	512	Probable anion transporte	no	no	0.773	0.560	0.366	4e-52
Q8W0H5	519	Probable anion transporte	no	no	0.636	0.454	0.411	3e-50
Q9NRA2	495	Sialin OS=Homo sapiens GN	yes	no	0.762	0.571	0.333	2e-46
Q53WP9	535	Probable anion transporte	no	no	0.681	0.472	0.396	2e-46

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/363 (70%), Positives = 285/363 (78%), Gaps = 18/363 (4%)

Query: 1   MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPR-LLLGVLSGDRVCSFRVS 53
           M+ARAL  S  + S      PP  ++ ++  R  L+P   P+ L + +   +R   FRV 
Sbjct: 1   MNARALLCSSNIHSLYTSNRPPEKTSSSRSLR-NLKPS--PKSLRVWIYPRNRSSVFRVL 57

Query: 54  VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVLCFS 111
           VR            +  + E   D    + D+  DS S  ++PWWEEFPKRW IV+LCFS
Sbjct: 58  VRSSDKSE----SSNSYYVEG--DKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFS 111

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 112 AFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRV 171

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           LGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ERSRS
Sbjct: 172 LGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRS 231

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP EDP L
Sbjct: 232 LALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL 291

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
            P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY+QV
Sbjct: 292 LPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQV 351

Query: 352 SSF 354
             F
Sbjct: 352 LKF 354

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.
Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/338 (68%), Positives = 268/338 (79%), Gaps = 14/338 (4%)

Query: 35  PRLLLGVLSGDRVC---SFRVSVR---DVKSESYNVSEKSVKFEEALKDIALRSEDLGVD 88
           PR      S D  C    +++ VR   D K+E Y ++   +    +  D+   +  +G D
Sbjct: 113 PRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSPL----SPSDVPAEAVLIG-D 167

Query: 89  SESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSF 148
           +  + PWW++FPKRW +V+LCF +FLLCNMDRVNMSIAILPMS+EF W+PATVGLIQSSF
Sbjct: 168 TNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSF 227

Query: 149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE 208
           FWGYLLTQI GGIWAD  GGK VLGFGVVWWSIAT LTP+AAK+GLPFLLV+R FMGIGE
Sbjct: 228 FWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGE 287

Query: 209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
           GVAMPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LI RFGWPSVFY+FGS
Sbjct: 288 GVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGS 347

Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIV 328
           LG+VWF +W  KAHSSP+EDP+L  AEK+ I+     KEPV +IPW LILSKPPVWALIV
Sbjct: 348 LGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIPWKLILSKPPVWALIV 407

Query: 329 SHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC 366
           SHFCHNWGTFILLTWMPTYYNQV  F    L+E+  +C
Sbjct: 408 SHFCHNWGTFILLTWMPTYYNQVLKF---NLTESGLLC 442

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/269 (83%), Positives = 234/269 (86%), Gaps = 3/269 (1%)

Query: 98  EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQI 157
           +FPKRW IV LCFSAFLLCNMDRVNMSIAILPMSAEF WNP TVGLIQSSFFWGYLLTQI
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
           AGGIWADTVGGK VLGFGV+WWSIATALTP AAKLGLPFLLV R FMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           ILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LIH FGWPSVFYSFGSLG  WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337
            SKA+SSP EDP +   EKKLI S     EPVK IPWGLILSKPPVWALIVSHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354

Query: 338 FILLTWMPTYYNQVSSFGSKTLSETVQVC 366
           FILLTWMPTYYNQV  F    L+E+   C
Sbjct: 355 FILLTWMPTYYNQVLKF---NLTESGLFC 380

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/324 (69%), Positives = 261/324 (80%), Gaps = 5/324 (1%)

Query: 45  DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
           D V  FR S++  +S +Y  SE+S   E  +      +E + V+   ++  PWW++FP+R
Sbjct: 72  DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131

Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
           W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct: 132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
           AD  GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct: 192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251

Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
           +PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL  A+
Sbjct: 252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311

Query: 283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
           SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct: 312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371

Query: 343 WMPTYYNQVSSFGSKTLSETVQVC 366
           WMPTYYNQV  F    L+E+  +C
Sbjct: 372 WMPTYYNQVLKF---NLTESGLLC 392

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/267 (42%), Positives = 168/267 (62%), Gaps = 12/267 (4%)

Query: 94  PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+ +  GL+QSSFFWGY 
Sbjct: 90  PPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYA 149

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
           L+Q+ GG  +   GG+ VL  GV  WS ATAL P+ A   +P L+  R+ +GIGEGV+  
Sbjct: 150 LSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPS 208

Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
           A  +++++ +PV ERSR++  V+ G+ LGSV GL  +P +I  F W SVFY FG LG  W
Sbjct: 209 AATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGW 268

Query: 274 FT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEP----VKTIPWGLILSKPPVWALI 327
           F    +L++   S  +  ++  + K    S  A+KE     +K IPW      P VWA+I
Sbjct: 269 FVGFQFLNEEEVS-YKGNEISTSHK----SENATKEELGSSLKEIPWKSFFQSPAVWAMI 323

Query: 328 VSHFCHNWGTFILLTWMPTYYNQVSSF 354
            +HFC +WG +  L+W+PTY+++  S 
Sbjct: 324 YTHFCGSWGHYTCLSWLPTYFSEALSL 350

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/271 (42%), Positives = 163/271 (60%), Gaps = 17/271 (6%)

Query: 94  PWWEEF--PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWG 151
           P + EF   +R  +V +   A  LCN DRV MS+AI+P+S    W+ +  G++QSSF WG
Sbjct: 101 PNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWG 160

Query: 152 YLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA 211
           YL++ IAGG   D  GGK V+ +GV  WS+AT LTP AA   L  LL  R  +G+ EGVA
Sbjct: 161 YLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVA 220

Query: 212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271
           +P MNN++++W P  ERSR++ +  +G  LG+V GL  SP L+ + G    F  FG  G 
Sbjct: 221 LPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGF 280

Query: 272 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTI-----------PWGLILSK 320
           +W  VWLS   S+P   PQ+  +E + I      K+ + T+           P+G +LSK
Sbjct: 281 LWLLVWLSATSSAPDRHPQITKSELEYI----KQKKQISTMENKRISTSGIPPFGRLLSK 336

Query: 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
            P WA+IV++  H+WG F++L+WMP Y+N V
Sbjct: 337 MPTWAVIVANSMHSWGFFVILSWMPIYFNSV 367

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 172/303 (56%), Gaps = 16/303 (5%)

Query: 55  RDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFL 114
           R+  ++  N S +    E  L          G  SE++       P+R  +V+L      
Sbjct: 59  RNAAAKKRNQSPERCAAEGVLTG--------GGGSEAIAEVRTMMPERIKVVILTACMMC 110

Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
           LCN DRV MS+A++P++ +  W+ + +G++QSSF WGY+ + + GG   D  GGK VL +
Sbjct: 111 LCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAW 170

Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
           GV  WS+AT LTP AA      LL VR F G+ EGVAMP+M  +LS+W P+ ER+ ++ +
Sbjct: 171 GVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGI 230

Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
             +G ++G+V GL  +P ++   G    F  F SLG +W + W S   ++P + P +  +
Sbjct: 231 SMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRS 290

Query: 295 EKKLIVS------SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
           E +LI +      S  S +P  ++   L+LSK P WA+I ++  +NWG F+LL+WMP Y+
Sbjct: 291 ELRLIQAGKPVQPSTISPKPNPSLR--LLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYF 348

Query: 349 NQV 351
             V
Sbjct: 349 QTV 351

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 146/243 (60%), Gaps = 7/243 (2%)

Query: 116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG 175
           CN DRV MS+AI+P+S  + W P+  G++QSSF WGYL++ I GG   D  GGK V+ +G
Sbjct: 111 CNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYG 170

Query: 176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV 235
           V  WS+AT L+P AA   L   L  RV +G+ EGVA+P+MNN++ +W P  ERS ++ + 
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230

Query: 236 YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE 295
            +G  LG+  GL  SP ++ R G    F  FG  G +W  VW+S    +P E+ Q+   E
Sbjct: 231 MAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHE 290

Query: 296 -------KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
                  +KL+ +    +   K  P+  +LSK P WALI ++  H+WG F++L+WMP Y+
Sbjct: 291 LDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYF 350

Query: 349 NQV 351
             +
Sbjct: 351 KTI 353

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 170/321 (52%), Gaps = 38/321 (11%)

Query: 75  LKDIALRSEDLGVDSESLVPWW---EEFP----KRWFIVVLCFSAFLLCNMDRVNMSIAI 127
           ++D+A    +   D   L+P     E  P     R+ + +L F  F +    RVN+S+A+
Sbjct: 5   VRDLARNDGEESTDRTPLLPGAPRAEAAPVCCSARYNLAILAFFGFFIVYALRVNLSVAL 64

Query: 128 LPM------------------------------SAEFNWNPATVGLIQSSFFWGYLLTQI 157
           + M                                ++ W+  T G I  SFF+GY++TQI
Sbjct: 65  VDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQI 124

Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
            GG  A  +GGK +LGFG++  ++ T  TP+AA LG+  L+V+R   G+GEGV  PAM+ 
Sbjct: 125 PGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHA 184

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           + S W P  ERS+ L++ Y+G  LG+V  L  S  + +   W  VFY FG++G  WF +W
Sbjct: 185 MWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLW 244

Query: 278 LSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTIPWGLILSKPPVWALIVSHFCHNWG 336
           +     +P +  ++   EK+ I+SS  ++    K++PW  IL   P+WA++V+HF +NW 
Sbjct: 245 IWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQKSVPWVPILKSLPLWAIVVAHFSYNWT 304

Query: 337 TFILLTWMPTYYNQVSSFGSK 357
            + LLT +PTY  ++  F  +
Sbjct: 305 FYTLLTLLPTYMKEILRFNVQ 325

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/255 (39%), Positives = 148/255 (58%), Gaps = 2/255 (0%)

Query: 99  FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
            P+R  +V L  +  LLCN DRV MS+A++P +A++ W+ + +G++QSSF WGY+ + + 
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 159 GGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI 218
           GG  AD  GGK V+      WS+AT LTP AA      LL +R   G+ EGVA P M+  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
           L KW P  ER+ ++ +   G +LG+V     +P ++   G    F  F SLG +W +VWL
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSS-CASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWG 336
               S P +   +  +E +LI++   ASK      P    ILSK  +WA+IV++  +NWG
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWG 358

Query: 337 TFILLTWMPTYYNQV 351
            F+LL+WMP Y+  V
Sbjct: 359 YFVLLSWMPVYFKTV 373

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
255569283	530	Sodium-dependent phosphate transport pro	0.954	0.667	0.709	1e-147
224104305	520	predicted protein [Populus trichocarpa]	0.935	0.667	0.708	1e-145
449515105	528	PREDICTED: sodium-dependent phosphate tr	0.978	0.687	0.696	1e-144
225434656	514	PREDICTED: sodium-dependent phosphate tr	0.954	0.688	0.710	1e-143
356539597	511	PREDICTED: sodium-dependent phosphate tr	0.819	0.594	0.807	1e-140
224054558	431	predicted protein [Populus trichocarpa]	0.752	0.647	0.859	1e-139
358346124	516	Sodium-dependent phosphate transport pro	0.827	0.594	0.784	1e-138
297826359	512	hypothetical protein ARALYDRAFT_481880 [	0.921	0.667	0.715	1e-138
312281837	510	unnamed protein product [Thellungiella h	0.916	0.666	0.707	1e-138
388500962	516	unknown [Medicago truncatula]	0.827	0.594	0.777	1e-137

>gi|255569283|ref|XP_002525609.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis] gi|223535045|gb|EEF36727.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/393 (70%), Positives = 305/393 (77%), Gaps = 39/393 (9%)

Query: 1   MSARALFY---SPILQSPPYISARNKLSRAELRPRGLPR-------LLLGVLSGDRVCSF 50
           MSARAL Y   +P+ +      +  K S  ++ P   PR       + L    G     F
Sbjct: 1   MSARALLYYSSAPLFRPRKTDISVPKKSFGQIIPDLKPRESFNFRVVRLQPEGGSCSGLF 60

Query: 51  RVSVR--------------DVKSESYNVSE---KSVKFEEALKDIALRSEDLGVDSESLV 93
           RVS                DVKSE Y +SE   +SVKFE++L          G DSES +
Sbjct: 61  RVSAHKSSRSRSEFVKVHADVKSERYKISESVPESVKFEDSLS---------GNDSESSL 111

Query: 94  PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           PWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVGLIQSSFFWGYL
Sbjct: 112 PWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVGLIQSSFFWGYL 171

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
           LTQIAGGIWADTVGGK VLGFGVVWWSIATALTPVAAK GLPFLLVVRVFMGIGEGVAMP
Sbjct: 172 LTQIAGGIWADTVGGKLVLGFGVVWWSIATALTPVAAKFGLPFLLVVRVFMGIGEGVAMP 231

Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
           AM NILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT+W
Sbjct: 232 AMTNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTIW 291

Query: 274 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
           F VWL+KA+SSP +DPQLRP EK+LI+++ A KEPVK IPWGLILSKPPVWALIVSHFCH
Sbjct: 292 FAVWLNKAYSSPLDDPQLRPEEKQLIIANSACKEPVKVIPWGLILSKPPVWALIVSHFCH 351

Query: 334 NWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC 366
           NWGTFILLTWMPTYYNQV  F    L+E+  VC
Sbjct: 352 NWGTFILLTWMPTYYNQVLKF---DLTESGLVC 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104305|ref|XP_002313389.1| predicted protein [Populus trichocarpa] gi|222849797|gb|EEE87344.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/387 (70%), Positives = 299/387 (77%), Gaps = 40/387 (10%)

Query: 2   SARALFYSPI------LQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR 55
           ++RAL YS        L+SPP IS+  +      RPR      + + +  R C FRVSVR
Sbjct: 3   TSRALLYSFTDPTFRPLKSPPDISSPKR------RPRERLNFRVRLHTDHRCCVFRVSVR 56

Query: 56  ------------DVKSESYNVSE---KSVKFEE-ALKDIALRSEDLGVDSESLVPWWEEF 99
                       DVKSE Y + E   +S K EE AL D+ L         +S VPWWEEF
Sbjct: 57  NSGRGETGKVYADVKSEPYEILETVPESAKLEEDALDDVVL---------DSTVPWWEEF 107

Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
           PKRW IV+LCFSAFL CNMDRVNMSIAILPMSAE NWNPATVGLIQSSFFWGYLLTQ+AG
Sbjct: 108 PKRWVIVILCFSAFLPCNMDRVNMSIAILPMSAENNWNPATVGLIQSSFFWGYLLTQVAG 167

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
           GIWADTVGGK VLGF V+WWSIAT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNIL
Sbjct: 168 GIWADTVGGKKVLGFAVIWWSIATILTPVAAKVGLPFLLVVRAFMGIGEGVAMPAMNNIL 227

Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
           SKWVPV+ERSRSLA VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVWF  WLS
Sbjct: 228 SKWVPVSERSRSLAFVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWFAAWLS 287

Query: 280 KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339
           KAHSSP +DPQLRPAEKKLI ++  SKEPV++IPW LILSK PVWALIVSHFCHNWGTFI
Sbjct: 288 KAHSSPLDDPQLRPAEKKLIFANSFSKEPVESIPWRLILSKAPVWALIVSHFCHNWGTFI 347

Query: 340 LLTWMPTYYNQVSSFGSKTLSETVQVC 366
           LLTWMPTYYNQV  F    L+E+   C
Sbjct: 348 LLTWMPTYYNQVLKF---NLTESGLFC 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515105|ref|XP_004164590.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Cucumis sativus]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/382 (69%), Positives = 297/382 (77%), Gaps = 19/382 (4%)

Query: 1   MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR----- 55
           M+A AL YS     P    +  K S  E RP+   R  L VL  DR   F++S R     
Sbjct: 1   MAAGALLYSFSPTPPNPSDSFKKFSLTERRPKFPSRFHLTVLPEDRCFVFQISARRHSGG 60

Query: 56  --------DVKSESYNVSEK---SVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWF 104
                   D+KS  Y+VS K   SVKF  ++    L  ++   +    +PWW++FPKRW 
Sbjct: 61  RGNWRLWTDLKSNPYDVSIKPPNSVKFNSSIDKSVLDDDEEEDELGDELPWWKQFPKRWL 120

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
           IV LCFSAFLLCNMDRVNMSIAILPMSAE+NWNP TVGLIQSSFFWGYLLTQIAGGIWAD
Sbjct: 121 IVSLCFSAFLLCNMDRVNMSIAILPMSAEYNWNPQTVGLIQSSFFWGYLLTQIAGGIWAD 180

Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
           TVGGK VLGFGV+WWS+AT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVP
Sbjct: 181 TVGGKLVLGFGVIWWSVATVLTPVAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVP 240

Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 284
           VAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVF+SFGSLG VWF VWL+KAHSS
Sbjct: 241 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFFSFGSLGAVWFAVWLNKAHSS 300

Query: 285 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344
           P +DPQLRP EKKLI ++  SKEPVK+IPWG ILSKPPVWALIVSHFCHNWGTFILLTWM
Sbjct: 301 PLDDPQLRPQEKKLIFANSVSKEPVKSIPWGTILSKPPVWALIVSHFCHNWGTFILLTWM 360

Query: 345 PTYYNQVSSFGSKTLSETVQVC 366
           PTYY+QV  F    L+E+  +C
Sbjct: 361 PTYYHQVLKF---NLTESGLLC 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434656|ref|XP_002279594.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Vitis vinifera] gi|297745933|emb|CBI15989.3| unnamed protein product [Vitis vinifera]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/377 (71%), Positives = 292/377 (77%), Gaps = 23/377 (6%)

Query: 1   MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVS------- 53
           M+ARA  +S    SP + S  +  + ++  P    RL       DR C FRVS       
Sbjct: 1   MNARAYLFS---FSPDFHSLHSHKASSDF-PLPKKRLFRFRFQ-DRTCVFRVSGRNAGEF 55

Query: 54  ----VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLC 109
                R++      V  + VKF+EAL D+ L  EDL    E  VPWWE+FPKRW IV+LC
Sbjct: 56  TGLARREIGKVFAEVKSEQVKFQEALDDVVLGEEDL----EGDVPWWEQFPKRWVIVILC 111

Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
           FSAFLLCNMDRVNMSIAILPMSAEFNW+P TVGLIQSSFFWGYLLTQIAGGIWADTVGGK
Sbjct: 112 FSAFLLCNMDRVNMSIAILPMSAEFNWSPTTVGLIQSSFFWGYLLTQIAGGIWADTVGGK 171

Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
            VLGFGVVWWSIAT LTP+AAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVPV+ERS
Sbjct: 172 LVLGFGVVWWSIATILTPIAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVPVSERS 231

Query: 230 RSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 289
           RSLALVYSGMYLGSVTGLAFSPFLIH FGWPSVFYSFGSLGTVW   WLSKA+SSP EDP
Sbjct: 232 RSLALVYSGMYLGSVTGLAFSPFLIHSFGWPSVFYSFGSLGTVWLATWLSKAYSSPLEDP 291

Query: 290 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN 349
           +L P EKKLIVS+  +KEPVK IPW LILSKPPVWALI SHFCHNWGTFILLTWMPTYYN
Sbjct: 292 ELLPKEKKLIVSNSVTKEPVKKIPWRLILSKPPVWALIGSHFCHNWGTFILLTWMPTYYN 351

Query: 350 QVSSFGSKTLSETVQVC 366
           QV  F    L+E+   C
Sbjct: 352 QVLKF---NLTESGLFC 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539597|ref|XP_003538283.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Glycine max]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/312 (80%), Positives = 276/312 (88%), Gaps = 8/312 (2%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS-ESLVPWWEEFPKRWFIVVLCFSAFL 114
           +VKSE  N+SE S K+E+ +  +  + +  G+D+ E    WW+ FPKRW IVVLCFSAFL
Sbjct: 58  NVKSEK-NLSE-SPKYEDDV--VVQKKKKRGLDNVEEEARWWQVFPKRWVIVVLCFSAFL 113

Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
           LCNMDRVNMSIAILPMSAE+NWNP+TVGLIQSSFFWGYLLTQIAGGIWADTVGGK VLGF
Sbjct: 114 LCNMDRVNMSIAILPMSAEYNWNPSTVGLIQSSFFWGYLLTQIAGGIWADTVGGKQVLGF 173

Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
           GVVWWS+ATALTP+AAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPV+ERSRSLAL
Sbjct: 174 GVVWWSVATALTPIAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVSERSRSLAL 233

Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
           VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW +VWLSKAHSSP EDP+LRP 
Sbjct: 234 VYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWCSVWLSKAHSSPLEDPELRPE 293

Query: 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSF 354
           EKKLI ++C+SKEPVKTIPW LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV  F
Sbjct: 294 EKKLITANCSSKEPVKTIPWRLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKF 353

Query: 355 GSKTLSETVQVC 366
               L+E+   C
Sbjct: 354 ---NLTESGLFC 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054558|ref|XP_002298320.1| predicted protein [Populus trichocarpa] gi|222845578|gb|EEE83125.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/284 (85%), Positives = 258/284 (90%), Gaps = 5/284 (1%)

Query: 83  EDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVG 142
           +D G+DS   VPWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVG
Sbjct: 4   DDAGLDST--VPWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVG 61

Query: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202
           LIQSSFFWGYLLTQIAGGIWADTVGGK VLGFGV+WWSIATALTPVAAK GLPFLLVVR 
Sbjct: 62  LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATALTPVAAKAGLPFLLVVRA 121

Query: 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV 262
           FMGIGEGVAMPAMN ILSKWVPV+ERSRSLALVYSGMYLGSVTGL FSPFLIH+FGWPSV
Sbjct: 122 FMGIGEGVAMPAMNTILSKWVPVSERSRSLALVYSGMYLGSVTGLGFSPFLIHQFGWPSV 181

Query: 263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP 322
           FYSFGSLGTVWF  WLSKAHSSP +DPQLRP EKKLI ++ +SKEPVK+IPWGLILSK P
Sbjct: 182 FYSFGSLGTVWFAAWLSKAHSSPLDDPQLRPEEKKLIFANSSSKEPVKSIPWGLILSKGP 241

Query: 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC 366
           VWALIVSHFCHNWGTFILLTWMPTYYNQV  F    L+E+   C
Sbjct: 242 VWALIVSHFCHNWGTFILLTWMPTYYNQVLKF---NLTESGLFC 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346124|ref|XP_003637121.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355503056|gb|AES84259.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/315 (78%), Positives = 267/315 (84%), Gaps = 8/315 (2%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVP----WWEEFPKRWFIVVLCFS 111
           DVKSE +   E S K+++      + S   GVD E  V     WWE FPKRW IV+LCFS
Sbjct: 57  DVKSEKHG-PEASSKYQDLAVHKKVVSGLDGVDVEEEVTESSSWWEVFPKRWVIVILCFS 115

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQV 175

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
           RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355

Query: 352 SSFGSKTLSETVQVC 366
             F    L+E+   C
Sbjct: 356 LKF---NLTESGLFC 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826359|ref|XP_002881062.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata] gi|297326901|gb|EFH57321.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/366 (71%), Positives = 285/366 (77%), Gaps = 24/366 (6%)

Query: 1   MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSV 54
           M+ARAL  SP L S      PP     ++  R  L+P     L + +   +R   FRV V
Sbjct: 1   MNARALLCSPNLHSLYTSNRPPEKPTSSRSLRT-LKP-APNSLRVWIYPRNRSGVFRVLV 58

Query: 55  RDVK----SESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVL 108
           R       S SY V  + V           R+  +  DS S  +VPWWEEFPKRW IV+L
Sbjct: 59  RSSDKRESSNSYYVDGERVN----------RTNGVVSDSPSSIVVPWWEEFPKRWVIVLL 108

Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
           CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 109 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168

Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
           K VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ER
Sbjct: 169 KRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQER 228

Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
           SRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP ED
Sbjct: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLED 288

Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
           P L P E+KLIV +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY
Sbjct: 289 PTLLPEERKLIVDNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYY 348

Query: 349 NQVSSF 354
           +QV  F
Sbjct: 349 HQVLKF 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281837|dbj|BAJ33784.1| unnamed protein product [Thellungiella halophila] gi|312281881|dbj|BAJ33806.1| unnamed protein product [Thellungiella halophila]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/366 (70%), Positives = 282/366 (77%), Gaps = 26/366 (7%)

Query: 1   MSARALFYSPILQS------PPYISARN----KLSRAELRPRGLPRLLLGVLSGDRVCSF 50
           M+ARAL  SP L S      PP  S+RN    K     LR    PR        +R   F
Sbjct: 1   MNARALLCSPNLHSLYTSNRPPETSSRNRRILKSDPKSLRVWIYPR--------NRSAVF 52

Query: 51  RVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESL--VPWWEEFPKRWFIVVL 108
           RV VR         S   V  +   K+I  R+   GV S+SL  +PWW+EFPKRW IV+L
Sbjct: 53  RVLVRSSDKGEIGNSNAEVYVD---KEIVTRN---GVASDSLSSLPWWKEFPKRWVIVLL 106

Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
           CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 107 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 166

Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
           K VLGFGV+WWSIAT LTP+AAKLGLPFLLVVR FMG+GEGVAMPAMNN+LSKWVPV ER
Sbjct: 167 KMVLGFGVIWWSIATILTPIAAKLGLPFLLVVRAFMGVGEGVAMPAMNNLLSKWVPVQER 226

Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
           SRSLALVYSGMY+GSV GLAFSPFLIH+FGWPSVFY FGSLGTVW T+WL+KA SSP ED
Sbjct: 227 SRSLALVYSGMYIGSVIGLAFSPFLIHQFGWPSVFYCFGSLGTVWLTLWLTKAESSPVED 286

Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
             L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY
Sbjct: 287 LTLLPQERKLIADNCASKEPVKSIPWRLILSKPPVWALICCHFCHNWGTFILLTWMPTYY 346

Query: 349 NQVSSF 354
           +QV  F
Sbjct: 347 HQVLKF 352

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500962|gb|AFK38547.1| unknown [Medicago truncatula]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/315 (77%), Positives = 266/315 (84%), Gaps = 8/315 (2%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVP----WWEEFPKRWFIVVLCFS 111
           DVKSE +   E S K+++      + S    VD E  V     WWE FPKRW IV+LCFS
Sbjct: 57  DVKSEKHG-PEASSKYQDLAVHKKVVSGLDSVDVEEEVTESSSWWEVFPKRWVIVILCFS 115

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIW+DTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWSDTVGGKQV 175

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
           RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355

Query: 352 SSFGSKTLSETVQVC 366
             F    L+E+   C
Sbjct: 356 LKF---NLTESGLFC 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.816	0.591	0.792	3.9e-131
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.859	0.589	0.691	2.4e-122
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.692	0.497	0.422	1.2e-56
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.727	0.527	0.384	1.3e-52
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.606	0.464	0.407	7.7e-52
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.598	0.448	0.421	2.6e-51
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.598	0.448	0.403	6.8e-51
RGD|1311388	495	Slc17a5 "solute carrier family	0.598	0.448	0.408	7.7e-50
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.595	0.446	0.400	1.3e-49
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.595	0.451	0.434	2e-49

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 248/313 (79%), Positives = 265/313 (84%)

Query:    45 DRVCSFRVSVRDV-KSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPK 101
             +R   FRV VR   KSES N    S   E    D    + D+  DS S  ++PWWEEFPK
Sbjct:    49 NRSSVFRVLVRSSDKSESSN----SYYVEG---DKVSGNNDVVSDSPSSIVLPWWEEFPK 101

Query:   102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
             RW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGI
Sbjct:   102 RWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGI 161

Query:   162 WADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK 221
             WADTVGGK VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSK
Sbjct:   162 WADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSK 221

Query:   222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281
             WVPV ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA
Sbjct:   222 WVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKA 281

Query:   282 HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341
              SSP EDP L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILL
Sbjct:   282 ESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILL 341

Query:   342 TWMPTYYNQVSSF 354
             TWMPTYY+QV  F
Sbjct:   342 TWMPTYYHQVLKF 354

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 224/324 (69%), Positives = 261/324 (80%)

Query:    45 DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
             D V  FR S++  +S +Y  SE+S   E  +      +E + V+   ++  PWW++FP+R
Sbjct:    72 DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131

Query:   103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
             W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct:   132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191

Query:   163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
             AD  GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct:   192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251

Query:   223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
             +PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL  A+
Sbjct:   252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311

Query:   283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
             SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct:   312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371

Query:   343 WMPTYYNQVSSFGSKTLSETVQVC 366
             WMPTYYNQV  F    L+E+  +C
Sbjct:   372 WMPTYYNQVLKFN---LTESGLLC 392

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 111/263 (42%), Positives = 165/263 (62%)

Query:    94 PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
             P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+ +  GL+QSSFFWGY 
Sbjct:    90 PPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYA 149

Query:   154 LTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 212
             L+Q+ GG W   + GG+ VL  GV  WS ATAL P+ A   +P L+  R+ +GIGEGV+ 
Sbjct:   150 LSQLPGG-WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSP 207

Query:   213 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272
              A  +++++ +PV ERSR++  V+ G+ LGSV GL  +P +I  F W SVFY FG LG  
Sbjct:   208 SAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVG 267

Query:   273 WFT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH 330
             WF    +L++   S  +  ++  + K    +       +K IPW      P VWA+I +H
Sbjct:   268 WFVGFQFLNEEEVS-YKGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTH 326

Query:   331 FCHNWGTFILLTWMPTYYNQVSS 353
             FC +WG +  L+W+PTY+++  S
Sbjct:   327 FCGSWGHYTCLSWLPTYFSEALS 349

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 107/278 (38%), Positives = 165/278 (59%)

Query:    86 GVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQ 145
             G  SE++       P+R  +V+L      LCN DRV MS+A++P++ +  W+ + +G++Q
Sbjct:    82 GGGSEAIAEVRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQ 141

Query:   146 SSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG 205
             SSF WGY+ + + GG   D  GGK VL +GV  WS+AT LTP AA      LL VR F G
Sbjct:   142 SSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFG 201

Query:   206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265
             + EGVAMP+M  +LS+W P+ ER+ ++ +  +G ++G+V GL  +P ++   G    F  
Sbjct:   202 LAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFIL 261

Query:   266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS------SCASKEPVKTIPWGLILS 319
             F SLG +W + W S   ++P + P +  +E +LI +      S  S +P  ++   L+LS
Sbjct:   262 FASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLR--LLLS 319

Query:   320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSK 357
             K P WA+I ++  +NWG F+LL+WMP Y+  V +   K
Sbjct:   320 KLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLK 357

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 503 (182.1 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 92/226 (40%), Positives = 139/226 (61%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             +++W+  T G I  SFF+GY++TQI GG  A  +GGK +LGFG+   S+ T LTP+AA L
Sbjct:    89 KYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADL 148

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
             G+ +L+ VR   G+GEGV  PAM+++ S W P  ERS+ L++ Y+G  LG+V  L  S  
Sbjct:   149 GVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGL 208

Query:   253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
             + +   W  VFY FG+LG +WF  W+      P     +   E++ I+SS   +    K+
Sbjct:   209 ICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKS 268

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSK 357
             +PW  IL   P+WA++V+HF +NW  + LLT +PTY  ++  F ++
Sbjct:   269 VPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQ 314

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 498 (180.4 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 94/223 (42%), Positives = 135/223 (60%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             ++ W+  T G I  SFF+GY++TQI GG  A  VGGK +LG G++  S+ T  TP+AA L
Sbjct:   100 KYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADL 159

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
             G+  L+V+R   G+GEGV  PAM+ + S W P  ERS+ L + Y+G  LG+V  L  S  
Sbjct:   160 GVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
             + +   W  VFY FG +G VWF +W+     +P     +   EK+ IVSS  ++    K 
Sbjct:   220 ICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQLSSQKV 279

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSF 354
             +PWG IL   P+WA++V+HF +NW  + LLT +PTY  ++  F
Sbjct:   280 VPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRF 322

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 494 (179.0 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 90/223 (40%), Positives = 139/223 (62%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             ++ W+  T G I  SFF+GY++TQI GG  A  +GGK +LGFG++  ++ T  TP+AA L
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADL 159

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
             G+  L+V+R   G+GEGV  PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  
Sbjct:   160 GVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
             + +   W  VFY FG++G  WF +W+     +P +  ++   EK+ I+SS  ++    K+
Sbjct:   220 ICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQKS 279

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSF 354
             +PW  IL   P+WA++V+HF +NW  + LLT +PTY  ++  F
Sbjct:   280 VPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRF 322

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 486 (176.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 91/223 (40%), Positives = 134/223 (60%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             ++ W+  T G I  SFF+GY++TQI GG  A  +GGK +LG G++  ++ T  TP+AA L
Sbjct:   100 KYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADL 159

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
             G+  L+V+R   G+GEGV  PAM+ + S W P  ERS+ L + Y+G  LG+V  L  S  
Sbjct:   160 GVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
             + +   W  VFY FG +G VWF +W+     +P     +   EK+ IVSS  ++    K 
Sbjct:   220 ICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQLSSQKV 279

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSF 354
             +PW  IL   P+WA++V+HF +NW  + LLT +PTY  ++  F
Sbjct:   280 VPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRF 322

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 89/222 (40%), Positives = 134/222 (60%)

Query:   134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG 193
             + W+  T G I  SFF+GY++TQI GG  A  VGGK +LGFG++  ++ T  TP+AA  G
Sbjct:   101 YQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADFG 160

Query:   194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253
             +  L+V+R   G+GEGV  PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  +
Sbjct:   161 VGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGII 220

Query:   254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTI 312
                  W  VFY FG +G +WF +W+     +P     +   EK+ I+SS  ++    K++
Sbjct:   221 CFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKSV 280

Query:   313 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSF 354
             PW  +L   P+WA++V+HF +NW  + LLT +PTY  ++  F
Sbjct:   281 PWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRF 322

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 493 (178.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 97/223 (43%), Positives = 135/223 (60%)

Query:   134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG 193
             ++WN  T G I  SFF+GY++TQI GG  A   G K +LG G++   I T LTP+AA LG
Sbjct:    96 YDWNSETQGWILGSFFYGYIITQIPGGYLARKYGAKWLLGLGILCTVIFTLLTPLAADLG 155

Query:   194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253
               +L+ VRV  GIGEGV  PAM+ + + W P  ERSR L + Y+G  LG+V  L  S  +
Sbjct:   156 AGYLIAVRVLEGIGEGVTYPAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALPLSGQI 215

Query:   254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT- 311
                  W  VFY FG++G +WF +W+    +SP+   ++  AEK  I+SS  ++  P +  
Sbjct:   216 CFYLDWTYVFYIFGAVGLLWFFLWICFVSNSPSSHKRITEAEKTYIMSSLKNELSPTQDY 275

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSF 354
             IPW  I    P+WA++V+HF +NW  + LLT +PTY N V  F
Sbjct:   276 IPWTSIFKSMPLWAIVVAHFSYNWTFYTLLTLLPTYMNDVLGF 318

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82390	ANTR1_ARATH	No assigned EC number	0.7052	0.9299	0.6738	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024146001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (514 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	3e-38
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-35
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-31
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-30
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-19
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	5e-15
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	6e-13
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-10
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	7e-09
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	1e-08
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	1e-08
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-05
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	3e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	8e-04
PRK05122	399	PRK05122, PRK05122, major facilitator superfamily	0.001

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  142 bits (359), Expect = 3e-38
 Identities = 78/222 (35%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
            F W+ A  GLI SS F+G ++ QI  G  A     K  +G G+   S+ + + P AA  
Sbjct: 70  NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG 129

Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
           G+  ++  RV  G+ +G   PA + I+ KW P  ERSR L +  SG  LG+   L  S +
Sbjct: 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGW 189

Query: 253 LI-HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPV- 309
           L     GWP +FY FG +G  W  +W       P+  P +   EKK I SS    K    
Sbjct: 190 LCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTR 249

Query: 310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
           +++P   I    PVWA+  + F H W   IL T++PT+ + V
Sbjct: 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV 291

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  131 bits (331), Expect = 4e-35
 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG 167
           L  +AFL      +      L ++ +   +P  +GL+ ++F  GY L Q   G  +D  G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 168 GKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE 227
            + VL  G++ +++   L   A+   L  LLV+RV  G+G G   PA   +++ W P  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 228 RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
           R R+L L+ +G  LG+  G      L   FGW + F     L  +   +        P E
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 288 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347
             + +PAE+           P   +P   +L + PV  L+++     +  F LLT++P Y
Sbjct: 179 SKRPKPAEEA----------PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLY 228

Query: 348 YNQ 350
              
Sbjct: 229 QEV 231

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  122 bits (307), Expect = 3e-31
 Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 8/246 (3%)

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
             ++  +DR N+S A   +  +   + A  G + S+F WGY++ Q  GG   D  G +  
Sbjct: 2   VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT 61

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L   +V W + T L   A       L ++RV +G  E    P +  I++ W P +ER+ +
Sbjct: 62  LAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           +++  S   LG + G     +++  F W   F   G LG +W  +WL      P +   L
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL 179

Query: 292 RPAEKKLIV----SSCASKEPVKTIPWGL--ILSKPPVWALIVSHFCHNWGTFILLTWMP 345
              EK ++V    +    K P     + +  +L    VW L +  F  N G    LTW P
Sbjct: 180 TEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFP 239

Query: 346 TYYNQV 351
           TY  Q 
Sbjct: 240 TYLVQE 245

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  117 bits (294), Expect = 9e-30
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 41/252 (16%)

Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
           ++L F  F L  +DR  +S A+  ++ +   + +  GLI S+F  GY L  +  G  +D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 166 VGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV 225
            G + VL  G++ +++ + L   A    L  LLV R  +G+G G   PA   ++++W P 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 226 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285
            ER R+L L  +G  LG++ G      L    GW  +F     LG +   + L       
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL------- 171

Query: 286 AEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 345
                                                +  L ++ F  ++G + LLT++P
Sbjct: 172 --------------------------------FLLRLLLLLALAFFLLSFGYYGLLTYLP 199

Query: 346 TYYNQVSSFGSK 357
            Y  +V    + 
Sbjct: 200 LYLQEVLGLSAA 211

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 61/266 (22%), Positives = 114/266 (42%), Gaps = 22/266 (8%)

Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
             +W  ++L F   L+   D   M  A   +SAE+  +P  +G + S+   G     +  
Sbjct: 13  RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFF 72

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
           G  AD +G + VL + ++ +S+ T L  +A    +  LL++R   G+G G  MP +N ++
Sbjct: 73  GPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130

Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
           S++ P   R  ++ L++ G  +G+  G   + +LI  FGW S+FY  G +  +   + L 
Sbjct: 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLLLLM 189

Query: 280 KAHSSPAEDPQLRPAEKKL-IVSSCA---------------SKEPVKTIPWGLILSKPPV 323
           +      +    +  E    IV++ A               + +  K   +  +      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 WA---LIVSHFCHNWGTFILLTWMPT 346
                L + +F    G + L  W+P 
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLPK 275

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 12/253 (4%)

Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
           F  +    + R N ++A+  +  E   +   +GL+ SSF   Y +++   G  +D    +
Sbjct: 1   FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60

Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
             L  G++  +I            L  +  +    GI +G+  P     ++KW   +ER 
Sbjct: 61  VFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118

Query: 230 RSLALVYSGMYLGS--VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
             ++       +G   +  L         + W  VF   G +  +   +       SP +
Sbjct: 119 TWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVSLICFLLLRDSP-Q 176

Query: 288 DPQLRPAEKKLI--VSSCASKEPVKTIPWGL----ILSKPPVWALIVSHFCHNWGTFILL 341
              L PAE+         A K+  +     +    +L    +W + + +         +L
Sbjct: 177 SCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 342 TWMPTYYNQVSSF 354
            W P Y  Q   F
Sbjct: 237 DWSPLYLTQEKGF 249

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
           + LCF   LL  +D  +  +A   M+ EF  + A +G   S+   G L   + GG  AD 
Sbjct: 17  IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR 76

Query: 166 VGGKAVLGFGVVWW---SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
           +G K +L   V  +   S+ATA          P LLV R+  G+G G A+P +  + S+ 
Sbjct: 77  IGRKRILIVSVALFGLFSLATAQAW-----DFPSLLVARLLTGVGLGGALPNLIALTSEA 131

Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264
           V    R  +++L+Y G+  G                W  +FY
Sbjct: 132 VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY 173

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 99  FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
             +   ++ L F            ++   L +      + A  GL+ S F  G +L  + 
Sbjct: 173 LLRLLLLLALAFFLLSFGYY--GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230

Query: 159 GGIWADTVGGK-AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
           GG+ +D +G +  +L  G++  ++   L  +A  L L  + ++   +G G G A PA+  
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL--LLGFGLGFAFPALLT 288

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           + S+  P   R  +  L  +   LG   G   +  L+   G+  VF    +L  +   + 
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348

Query: 278 L 278
           L
Sbjct: 349 L 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 20/239 (8%)

Query: 123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181
           + + +LP ++A+   +    G + +++  G  L      +    +  + +L   +  + +
Sbjct: 31  VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90

Query: 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL 241
           +  L+ +A       LL+ R   G+  GV       + ++ VP  +R R+LALV++G+ L
Sbjct: 91  SNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148

Query: 242 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS 301
            +V G+    FL   FGW + F +   L  +     L      P  +           + 
Sbjct: 149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALL---ALLLLWKLLPPSEISGSLPGPLRTLL 205

Query: 302 SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLS 360
                          +L +P V   +++ F    G F L T++  +   V+ F    +S
Sbjct: 206 R--------------LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVS 250

Length = 394

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
           +++  F  F+   +DR+N+  A L M  +   +    GL  + F+  Y++  I   I   
Sbjct: 9   LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA 68

Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
            +G +  +   +V W IA+  T  A   G   L ++R+ +GI E   +P +   L+ W P
Sbjct: 69  IIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
              R+R+ AL    M +    GL  S +++
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYIL 156

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 30/274 (10%)

Query: 101 KRWFIVVLC-----FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLT 155
           KRW I +       ++AF L    R N ++A+  +  +   +   +G++ S+F   Y ++
Sbjct: 24  KRWRIQIFLSIFIGYAAFYLT---RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVS 80

Query: 156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMP 213
           +   G+ +D    +  + FG+    I +A+  +       L    V+ V  G  +G+  P
Sbjct: 81  KFVMGVLSDRSNPRYFMAFGL----ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWP 136

Query: 214 AMNNILSKWVPVAERSRSLALV-----YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
                ++ W    ER    ++        G     V  LA   F     GW + FY  G 
Sbjct: 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFYFPGI 193

Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEK---KLIVSSCASKE----PVKTIPWGLILSKP 321
           +  +   + L        +   L P E+     +      KE        I    +L   
Sbjct: 194 IAII-VALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK 252

Query: 322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFG 355
            +W L +++       + +  W P Y ++V  F 
Sbjct: 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFS 286

Length = 448

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201
           GL+ + +  G L+     G+  D  G K VL  G+  + ++TA+  +++ + +  L++ R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIAR 58

Query: 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261
              G G   A+ A   +++   P  ER  +L L+ +G+ LG + G      L    GW +
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 262 VFYSFGSLGTVWF 274
            F     L    F
Sbjct: 119 PFLFLAILALAAF 131

Length = 141

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 3/157 (1%)

Query: 91  SLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW 150
            LVP W+   +    V+    A LL       +   +         +    GL+      
Sbjct: 191 PLVPAWKLLLRDP--VLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGL 248

Query: 151 GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT-ALTPVAAKLGLPFLLVVRVFMGIGEG 209
              + ++  G  +D +G +  L   ++   +A   L  ++      +LLV  + +G G G
Sbjct: 249 LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAG 308

Query: 210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG 246
           +  PA+N ++S   P  ER  +  L  +   LG   G
Sbjct: 309 LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 50/274 (18%), Positives = 91/274 (33%), Gaps = 33/274 (12%)

Query: 96  WEEFPKR--WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           WE   KR     + L   AF +  M     S   + + ++F  +    GL+ +       
Sbjct: 4   WEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVA------- 56

Query: 154 LTQIAG-------GIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-GLPFLLVVRVFMG 205
           +  + G       G   D  GG+      ++   I       A        LLV+ + +G
Sbjct: 57  IPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG 116

Query: 206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265
           +        M N  S + P  ++  +L +  +G    +V  L  +P +   FG+ +    
Sbjct: 117 LAGASFAVGMPNA-SFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNV 174

Query: 266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWA 325
            G    V   +    A     + P+ R            S +P        + S    W 
Sbjct: 175 AGIYV-VALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWL 222

Query: 326 LIVSHFCHNWGTFILLT-WMPTYYNQVSSFGSKT 358
           L + +F   +G F+  + ++P Y          T
Sbjct: 223 LSLLYFA-TFGGFVGFSAYLPMYLVTQFGLSPVT 255

Length = 417

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWA 163
            + +   +  L  ++  ++ ++ +L  +   +      GL+ S+FF GY +  +  G   
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63

Query: 164 DTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV 223
           D  G + VL  G++ + + T L  +A  +GL  LL++R+  G+G G  +P  + +LS+W 
Sbjct: 64  DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123

Query: 224 PVAERSRSLALVYS--GMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWLS 279
           P A        + +     LG   G   +  L+     GW + F     LG +   + L 
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183

Query: 280 K 280
            
Sbjct: 184 L 184

Length = 338

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG-EGVAMPAMNNI 218
           G+ AD  G K ++ + +V +S+ T L+ +A+  G+  L + R  +G+G  G    A    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131

Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
           +  W P   +S++ A + SG  +G++    F P     +GW + F  F  L  V   +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP------VWALIVSHFC 332
                   E  +   A+         S   V ++    + ++        V+ ++ S F 
Sbjct: 189 RA---RAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245

Query: 333 HNWGTFILLTWMPTY 347
            NW  F LL   PTY
Sbjct: 246 ANWPIFGLL---PTY 257

Length = 426

>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILP--MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
           IV+  F ++L      + + +A+LP  +  +  ++    GL+ S  +   LL++   G +
Sbjct: 20  IVMFTFISYL-----TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY 74

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAA------KLGLPFLLVVRVFMGIGEGVA 211
           ADT+G K  + FG+   +++  L  +A        L L  LL+ R+ +GIGE +A
Sbjct: 75  ADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129

Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
PRK10091	382	MFS transport protein AraJ; Provisional	99.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
PRK09705	393	cynX putative cyanate transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.95
TIGR00891	405	2A0112 putative sialic acid transporter.	99.95
PRK10642	490	proline/glycine betaine transporter; Provisional	99.95
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
PRK03699	394	putative transporter; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
PRK10504	471	putative transporter; Provisional	99.94
KOG2533	495	consensus Permease of the major facilitator superf	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.94
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.94
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.94
PRK10133	438	L-fucose transporter; Provisional	99.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.94
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
PRK11043	401	putative transporter; Provisional	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
PRK15075	434	citrate-proton symporter; Provisional	99.93
PRK09952	438	shikimate transporter; Provisional	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
PRK03893	496	putative sialic acid transporter; Provisional	99.92
PRK03633	381	putative MFS family transporter protein; Provision	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.92
PRK10054	395	putative transporter; Provisional	99.91
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.91
PRK05122	399	major facilitator superfamily transporter; Provisi	99.91
PRK10489	417	enterobactin exporter EntS; Provisional	99.91
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
PRK12382	392	putative transporter; Provisional	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK09874	408	drug efflux system protein MdtG; Provisional	99.89
TIGR00898	505	2A0119 cation transport protein.	99.89
TIGR00901	356	2A0125 AmpG-related permease.	99.89
PRK11010	491	ampG muropeptide transporter; Validated	99.89
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.88
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.88
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.88
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.88
PRK15011	393	sugar efflux transporter B; Provisional	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.87
PRK11902	402	ampG muropeptide transporter; Reviewed	99.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.87
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.86
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.85
KOG0254	513	consensus Predicted transporter (major facilitator	99.85
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.85
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.85
KOG2615	451	consensus Permease of the major facilitator superf	99.84
KOG0569	485	consensus Permease of the major facilitator superf	99.83
PTZ00207	591	hypothetical protein; Provisional	99.82
PRK09528	420	lacY galactoside permease; Reviewed	99.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.81
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.8
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.8
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.78
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.77
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.76
KOG3626	735	consensus Organic anion transporter [Secondary met	99.76
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.75
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.74
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.72
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.69
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.69
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.69
KOG2563	480	consensus Permease of the major facilitator superf	99.68
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.68
PRK09528	420	lacY galactoside permease; Reviewed	99.67
PRK05122	399	major facilitator superfamily transporter; Provisi	99.67
PRK15011	393	sugar efflux transporter B; Provisional	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.66
PRK10642	490	proline/glycine betaine transporter; Provisional	99.66
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.65
PRK12382	392	putative transporter; Provisional	99.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.64
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.63
PRK09874	408	drug efflux system protein MdtG; Provisional	99.63
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.63
PRK03545	390	putative arabinose transporter; Provisional	99.63
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.62
PRK10489	417	enterobactin exporter EntS; Provisional	99.61
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.61
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.61
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.61
TIGR00893	399	2A0114 d-galactonate transporter.	99.6
PRK09669	444	putative symporter YagG; Provisional	99.6
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.6
PRK03893	496	putative sialic acid transporter; Provisional	99.6
PRK03699	394	putative transporter; Provisional	99.59
PRK09705	393	cynX putative cyanate transporter; Provisional	99.58
PRK03633	381	putative MFS family transporter protein; Provision	99.58
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.57
TIGR00891	405	2A0112 putative sialic acid transporter.	99.57
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.57
PRK11663	434	regulatory protein UhpC; Provisional	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.56
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.55
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.54
PRK10429	473	melibiose:sodium symporter; Provisional	99.54
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.53
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.53
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.52
PF13347	428	MFS_2: MFS/sugar transport protein	99.52
PRK09952	438	shikimate transporter; Provisional	99.51
PRK12307	426	putative sialic acid transporter; Provisional	99.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.49
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.48
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.48
PRK09848	448	glucuronide transporter; Provisional	99.47
PRK15075	434	citrate-proton symporter; Provisional	99.46
TIGR00895	398	2A0115 benzoate transport.	99.46
PRK10054	395	putative transporter; Provisional	99.45
PRK10504	471	putative transporter; Provisional	99.45
PRK11462	460	putative transporter; Provisional	99.45
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.44
PRK11010	491	ampG muropeptide transporter; Validated	99.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.43
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.43
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.43
KOG0569	485	consensus Permease of the major facilitator superf	99.43
TIGR00900	365	2A0121 H+ Antiporter protein.	99.43
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.42
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.41
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.4
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.4
PRK10091	382	MFS transport protein AraJ; Provisional	99.4
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.39
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.38
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.38
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.38
TIGR00898	505	2A0119 cation transport protein.	99.37
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.37
PLN00028	476	nitrate transmembrane transporter; Provisional	99.36
COG2211	467	MelB Na+/melibiose symporter and related transport	99.36
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.36
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.35
PRK11902	402	ampG muropeptide transporter; Reviewed	99.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.34
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.34
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.32
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.32
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.31
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.31
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.3
PRK09848	448	glucuronide transporter; Provisional	99.3
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.3
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.29
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.27
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.26
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.26
KOG3762	618	consensus Predicted transporter [General function	99.25
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.24
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.24
PRK10429	473	melibiose:sodium symporter; Provisional	99.24
PRK10133	438	L-fucose transporter; Provisional	99.22
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.21
PF13347	428	MFS_2: MFS/sugar transport protein	99.2
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.19
TIGR00901	356	2A0125 AmpG-related permease.	99.18
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.17
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.16
PRK11043	401	putative transporter; Provisional	99.16
COG0477	338	ProP Permeases of the major facilitator superfamil	99.15
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.12
PRK09669	444	putative symporter YagG; Provisional	99.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.07
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.03
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.03
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.0
KOG2532	466	consensus Permease of the major facilitator superf	98.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.96
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.94
PRK11462	460	putative transporter; Provisional	98.94
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.93
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.92
COG2211	467	MelB Na+/melibiose symporter and related transport	98.91
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.84
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.82
KOG0637	498	consensus Sucrose transporter and related proteins	98.81
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.81
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.76
KOG0254	513	consensus Predicted transporter (major facilitator	98.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.73
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.7
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.64
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.59
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.46
KOG2533	495	consensus Permease of the major facilitator superf	98.44
PF12832	77	MFS_1_like: MFS_1 like family	98.44
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.42
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.37
PTZ00207	591	hypothetical protein; Provisional	98.35
KOG2615	451	consensus Permease of the major facilitator superf	98.31
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.2
COG3202	509	ATP/ADP translocase [Energy production and convers	98.2
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.17
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.14
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.02
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.01
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.0
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.95
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.91
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.88
PRK03612	521	spermidine synthase; Provisional	97.81
KOG2563	480	consensus Permease of the major facilitator superf	97.69
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.23
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.18
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.11
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.1
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.09
TIGR00805	633	oat sodium-independent organic anion transporter.	96.96
KOG3810	433	consensus Micronutrient transporters (folate trans	96.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.93
KOG3762	618	consensus Predicted transporter [General function	96.53
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.47
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.34
KOG3097	390	consensus Predicted membrane protein [Function unk	96.01
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.32
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.0
KOG3626	735	consensus Organic anion transporter [Secondary met	94.78
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.6
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.58
KOG3880	409	consensus Predicted small molecule transporter inv	94.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.28
KOG0637	498	consensus Sucrose transporter and related proteins	93.49
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	92.98
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.93
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.82
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.17
KOG3810	433	consensus Micronutrient transporters (folate trans	91.23
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	90.5
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.99
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.85
PRK10263	1355	DNA translocase FtsK; Provisional	89.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	88.71
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	88.47
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	88.25
PF12832	77	MFS_1_like: MFS_1 like family	87.26
KOG3880	409	consensus Predicted small molecule transporter inv	85.37
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	84.61
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.08
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	83.51
PRK11588	506	hypothetical protein; Provisional	81.63

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.5e-31  Score=233.69  Aligned_cols=250  Identities=20%  Similarity=0.331  Sum_probs=225.9

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +..+..++.+.++.|..+........++|++.+|+|++..+.|+..++|.++..++.|+...+.||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34566677788888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      .++.+++++++  ||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+||
T Consensus        89 i~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHH
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                      |+.|++.++++++.++..+...|  |...++....+               ..+..+++|+|.++...+..++...+.+.
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~---------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~  229 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEISGSLPGP---------------LRTLLRLLRRPGVLLGLLATFLFMTGHFA  229 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcc---------------hhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence            99999999999999999888888  11111111000               11234589999999999999999999999


Q ss_pred             HHHhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          340 LLTWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       340 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      .++|+..++++..|++....++++.++|+
T Consensus       230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv  258 (394)
T COG2814         230 LYTYIRPFLESVAGFSVSAVSLVLLAFGI  258 (394)
T ss_pred             hHHhHHHHHHHccCCCHhHHHHHHHHHHH
Confidence            99999999999999999999999888765

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.4e-31  Score=231.61  Aligned_cols=265  Identities=17%  Similarity=0.274  Sum_probs=235.3

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      ++.|+.+++.+++++...++.+..++...|.+.++.++|.+|+|++.+.+.+.+.++.++.|.++||.+.|..+.+++++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhH--HHHhcc
Q 017461          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHR  256 (371)
Q Consensus       179 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~  256 (371)
                      .++..+++++++  +.+.+.++.++.|..+|..+|.+...++.|+++++||+..++++.+-++|+.+.|++.  +++..+
T Consensus       104 sai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         104 SAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999  9999999999999999999999999999999999999999999999999999999999  899998


Q ss_pred             cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhc-cCC-C----CcccchhhhhhcChhHHHHHHHH
Q 017461          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASK-E----PVKTIPWGLILSKPPVWALIVSH  330 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~~~l~~~~~~~~~~~~~  330 (371)
                      .+||..|++.+++++++.++.++..+|+|+...-.+.++......+. +++ +    ..++.-++.+++||.+|.++++.
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~  261 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALAN  261 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999999999999998865433333322111111 111 1    11234566788999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          331 FCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      ++.+..-+++..|.|.|+.+..|++...++...+.
T Consensus       262 vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~l  296 (448)
T COG2271         262 VFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISL  296 (448)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence            99999999999999999999999999998887664

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=1.2e-29  Score=236.02  Aligned_cols=263  Identities=21%  Similarity=0.323  Sum_probs=216.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      .+|..+..+++.+++++++...++...|.+.+++|++..++|++.+++.+++++++++.|+++||+|||+++.++.++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            46778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-----
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----  255 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  255 (371)
                      ++.+++++++  |++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|.++++++++++.+     
T Consensus        85 ~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        85 IASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999  999999999999999999999999999999999999999999999999999999999998864     


Q ss_pred             -ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhh---cc-----CC---CCcc---cchhhhhhcC
Q 017461          256 -RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS---CA-----SK---EPVK---TIPWGLILSK  320 (371)
Q Consensus       256 -~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~---~~~~---~~~~~~l~~~  320 (371)
                       ..|||+.|++.++++++..++.+++.||+|...+...+++++...+.   ..     .+   .+.+   ...++.++ +
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence             36999999999988888777777777887754322222222111000   00     00   0000   12344444 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-cCCChhhhhhhhhhe
Q 017461          321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-SSFGSKTLSETVQVC  366 (371)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~~~~~~~~~~~  366 (371)
                      +.+|...+.+++....++.+.+|+|.|+++. .|++..+++.+....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~  288 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIP  288 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHH
Confidence            8888888888888889999999999999883 467877777654443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=2.1e-29  Score=239.78  Aligned_cols=262  Identities=14%  Similarity=0.140  Sum_probs=220.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      ++|..+..++++.++..++.+++++.+|.+.+++|.+.++.+|+.+.|.++..++.+++|+++||+|||++++++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      ++.+++++++  |++.++++|+++|+|.+...+.....+.+.+ |+++|++++|++.....+|.++||.+++.+.++.||
T Consensus        83 ~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            9999999999  9999999999999999998888888887776 678999999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHH----------------------------------------H
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL----------------------------------------I  299 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~  299 (371)
                      ||.|++...++++..++.+++.|+++.++.+..+.....                                        .
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            999999888888777777777776543322111100000                                        0


Q ss_pred             hhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          300 VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ..+  .+.+.+..++ +++|++.++...+..++.....++...++|.|++..+|+++.++|+++...+
T Consensus       241 ~~e--~~~~~p~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~  305 (495)
T PRK14995        241 RTQ--LAASRPMIDM-RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVM  305 (495)
T ss_pred             HHH--hcCCCCCcCH-HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            011  1122223343 4789999988888888888888888899999999999999999999876543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=6.3e-29  Score=235.30  Aligned_cols=269  Identities=31%  Similarity=0.518  Sum_probs=227.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh----------------------hcCCCcchHHHHHHHHHHHHHH
Q 017461           97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSA----------------------EFNWNPATVGLIQSSFFWGYLL  154 (371)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~s~~~~~~~~  154 (371)
                      ...+.+|.+..+++++..+.+.++..++...+.+.+                      +++++..+.|++.+++.+++.+
T Consensus        12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~   91 (465)
T TIGR00894        12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII   91 (465)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence            356678888999999999999999999988888776                      7899999999999999999999


Q ss_pred             HHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHH
Q 017461          155 TQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL  234 (371)
Q Consensus       155 ~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  234 (371)
                      ++++.|+++||+|+|+++.++.++++++.+++.++...+++.+++.|+++|++.+...+....+++|++|+++|++++++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999998887655322688899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhcc-cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccC--CCCccc
Q 017461          235 VYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCAS--KEPVKT  311 (371)
Q Consensus       235 ~~~~~~~g~~~g~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  311 (371)
                      ...+..+|.++++++++.+.+. .|||+.|++.++++++..++.+.+.+++|..++...+.+++...+..+.  ++....
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQS  251 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCC
Confidence            9999999999999999999988 4999999999998888777777777776654443333333222221111  111224


Q ss_pred             chhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      .+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+.+++.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~  305 (465)
T TIGR00894       252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL  305 (465)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHH
Confidence            568899999999999999999999999999999999999899999998887543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=3.9e-29  Score=234.40  Aligned_cols=264  Identities=16%  Similarity=0.231  Sum_probs=211.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      .++.++...++.+++.+++...++..+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            34556667777888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCch
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  260 (371)
                      ++.+++++++  +++.+++.|++.|++.|..++...+++.|++|+++|+++++++..+.++|.++++.+++.+.+.+|||
T Consensus       100 ~~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663        100 IINILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            9999999999  99999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChH---HHHHHhhhccCCCCcccch-h-hhhhcChhHHHHHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA---EKKLIVSSCASKEPVKTIP-W-GLILSKPPVWALIVSHFCHNW  335 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~  335 (371)
                      +.|++.+++.++..++..++.+|++.........   ++.....+..++++..... + ...++++.+|.+.+..++...
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV  257 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            9999988877766555555556654322111000   0000000000000000111 1 225678889988888888888


Q ss_pred             HHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          336 GTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       336 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      .+..+.+|+|.|+.+.+|++..+++...+..
T Consensus       258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~  288 (434)
T PRK11663        258 VRAAINDWGNLYMSETLGVDLVTANSAVSMF  288 (434)
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            8888899999999877899999988776544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=8.7e-29  Score=229.08  Aligned_cols=246  Identities=16%  Similarity=0.267  Sum_probs=204.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      ++|..++.+.++.+..........+++|.+.+++|.+..+.+++.+++.+++.+++++.|++.||+|||+++.++.++++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34554555555555544444556677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCch
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  260 (371)
                      ++.+++.+++  |++.++++|+++|++.+...+...+++.|++|+++|++++|++..+.++|.+++|++++.+.+.+|||
T Consensus        86 ~~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         86 ASHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            9999999999  99999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (371)
                      +.|++.++++++..++.+...|+.+++++   .                ...++++++|++.++...+..++.....+..
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPSEHS---G----------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCc---c----------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            99999998887776666655555432110   0                0123556889999887777777666667767


Q ss_pred             HHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          341 LTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       341 ~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ..+++.|+++.+|++..+++.+.+..+
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~  251 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFG  251 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            788888888878999998888765543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.9e-28  Score=227.15  Aligned_cols=235  Identities=39%  Similarity=0.792  Sum_probs=219.1

Q ss_pred             hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhc
Q 017461          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (371)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  210 (371)
                      ..+++++..+.+++.+.+..|+++++++.|++.||||.|+++..+.++.++++++..++...+++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34688899999999999999999999999999999999999999999999999999999866778889999999999999


Q ss_pred             hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc-cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCC
Q 017461          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP  289 (371)
Q Consensus       211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (371)
                      .+++...+.+.|+|+++|++..++...+..+|.+++-+++|++.+. .||+++|++.++++++..++++.+..|+|.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999988


Q ss_pred             CCChHHHHHHhhhccCCCCc--ccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          290 QLRPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      ....+|.+.+...+.+++..  ...||+++++++.+|.+.+..++...+.+.+..|+|.|+++++|++..+.|++.++
T Consensus       225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sal  302 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSAL  302 (466)
T ss_pred             CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHH
Confidence            88888888777666554443  47899999999999999999999999999999999999999999999999988654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=1.6e-28  Score=224.23  Aligned_cols=228  Identities=12%  Similarity=0.123  Sum_probs=188.1

Q ss_pred             HhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhH
Q 017461          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (371)
                      ......+++.+|.+.+|+|++..+.|++.+.+.+++++++++.|+++||+|||+++..+.+....+.+.....+  +++.
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   81 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYEW   81 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHHH
Confidence            34456678999999999999999999999999999999999999999999999887666555555443333336  8999


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHH
Q 017461          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (371)
Q Consensus       197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~  276 (371)
                      ++++|+++|+|.+. .......++|++|+++|++++++...+..+|.++++++++.+.+.+|||+.|++.++++++..++
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            99999999999986 45666667999999999999999999999999999999999999999999999999998888888


Q ss_pred             HhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCh
Q 017461          277 WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGS  356 (371)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~  356 (371)
                      .+++.||+|+.+++..+.+             +...++++++++|.+|.+.+.+++....++++.+|+|.|+++ .|++.
T Consensus       161 ~~~~lp~~p~~~~~~~~~~-------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~  226 (368)
T TIGR00903       161 VLAALPALPFQAAEGFGFK-------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLED  226 (368)
T ss_pred             HHHHcCCCCCCCCCCcchH-------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCh
Confidence            8888888765432111000             001246789999999999999999999999999999999987 67876


Q ss_pred             hhhhhh
Q 017461          357 KTLSET  362 (371)
Q Consensus       357 ~~~~~~  362 (371)
                      . .+..
T Consensus       227 ~-~~~~  231 (368)
T TIGR00903       227 I-AGDA  231 (368)
T ss_pred             H-HHHH
Confidence            4 4443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=7.3e-28  Score=224.08  Aligned_cols=245  Identities=13%  Similarity=0.099  Sum_probs=207.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      ....+.+..++..+......+.+|.+.+++|.+..+.++..+++.++++++++++|+++||+|||++++++.++++++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~   96 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA   96 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence            33344455556667778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      ++.+++  +++.++++|+++|++.+...+....++.|++++++|+++++++..+..+|..+||++++.+.+..|||+.|+
T Consensus        97 ~~~~a~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~  174 (413)
T PRK15403         97 ATLFTT--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA  174 (413)
T ss_pred             HHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999  999999999999999887777778899999999999999999999999999999999999998889999999


Q ss_pred             HHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 017461          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (371)
                      +.+++.++..++.++..||++.++++....             +....+++.++|+|.++...+..++.....+.+..+.
T Consensus       175 ~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~-------------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~  241 (413)
T PRK15403        175 IIAVMGLIAFVGLLLAMPETVKRGAVPFSA-------------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVS  241 (413)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccccCCCCCh-------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999888777666566566654321111000             0012356778999999998888888888888888999


Q ss_pred             HHHHHHhcCCChhhhhhhhh
Q 017461          345 PTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       345 ~~~l~~~~g~s~~~~~~~~~  364 (371)
                      |.++++.+|+++.+.++...
T Consensus       242 P~~l~~~~g~s~~~~gl~~~  261 (413)
T PRK15403        242 PVILIDAGGMTTSQFAWTQV  261 (413)
T ss_pred             hHHHHHhcCCCHHHHHHHHH
Confidence            99999988999999888653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=1e-27  Score=221.84  Aligned_cols=247  Identities=17%  Similarity=0.255  Sum_probs=201.5

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      .+..|..+..+.+..+......+.....+|.+.+++|.++++.++..+++.++..+++++.|+++||+|||++++++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            34466665556655555555555666778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       179 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .+++.+++.+++  +++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+.+|
T Consensus        95 ~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g  172 (394)
T PRK10213         95 LTLSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG  172 (394)
T ss_pred             HHHHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999998  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHH
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (371)
                      ||+.|++.++++++..++.+...|+++.++++                   ...+..+.+|+|.++...+..++.....+
T Consensus       173 w~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK10213        173 WRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH-------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQF  233 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCccccc-------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999998877766555554445553321100                   01123467889999887777677666777


Q ss_pred             HHHHhh-HHHHHHhcCCChhhhhhhhhhee
Q 017461          339 ILLTWM-PTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       339 ~~~~~~-~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ...+++ |.|.+ .+|+++.+++.+....+
T Consensus       234 ~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~  262 (394)
T PRK10213        234 AFFTYIRPVYMN-LAGFGVDGLTLVLLSFG  262 (394)
T ss_pred             HHHHHHHHHHHH-hcCCChhHHHHHHHHHH
Confidence            777776 55554 47999998888766543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=4.8e-29  Score=235.95  Aligned_cols=264  Identities=17%  Similarity=0.180  Sum_probs=211.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      ..+.++.+++++++..++++..+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++.++.++++
T Consensus        26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~  105 (467)
T PRK09556         26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence            35667778888888899999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhhh-----hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          181 IATALTPV-----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       181 i~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      ++.++.++     ++  +++.++++|+++|++.+...+...++++|++|+++||+++|++..+.++|.++++++...+.+
T Consensus       106 ~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~  183 (467)
T PRK09556        106 ICMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN  183 (467)
T ss_pred             HHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence            77766665     46  899999999999999999999999999999999999999999999999999999999877766


Q ss_pred             cc---CchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHH-H-hhhc--cCCCCcc-cch-hhhhhcChhHHHH
Q 017461          256 RF---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL-I-VSSC--ASKEPVK-TIP-WGLILSKPPVWAL  326 (371)
Q Consensus       256 ~~---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~-~~~-~~~l~~~~~~~~~  326 (371)
                      ..   +||..|.+.+++.++..++.+++.++.|.+......++... . ..+.  .++++.. ... .+.+++++.+|..
T Consensus       184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  263 (467)
T PRK09556        184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLL  263 (467)
T ss_pred             hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHH
Confidence            43   69999998888888777776666666554322211111000 0 0000  0000100 011 2237899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          327 IVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      .+..++....+++..+|+|.|+++.+|++..++++..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~  303 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLF  303 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            9999998888889999999999988999999988776543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=3.6e-28  Score=224.76  Aligned_cols=252  Identities=27%  Similarity=0.497  Sum_probs=213.0

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhcc
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  192 (371)
                      +++..++...++...|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--
Confidence            345667778888999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHH
Q 017461          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (371)
Q Consensus       193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~  272 (371)
                      +++.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+..|||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHhhcccCCCCCCCCCChHHHHHHhhh------ccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSS------CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      ..++.++..++++.+++...++++......      .+++++.....+++++++|+++...+..++.......+..++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT  240 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            777776666666554332222222111111      11111223445678899999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhhhhe
Q 017461          347 YYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~~  366 (371)
                      |+++.+|+++.+++.+.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~  260 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLP  260 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHH
Confidence            99988899998888776543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.96  E-value=4.1e-27  Score=220.67  Aligned_cols=246  Identities=15%  Similarity=0.156  Sum_probs=190.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC---CCcchHHHHHH---HHHHHHHHHHHHHHHhhhhhCCchhHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFN---WNPATVGLIQS---SFFWGYLLTQIAGGIWADTVGGKAVLGF  174 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s---~~~~~~~~~~~~~g~l~dr~Grr~~~~~  174 (371)
                      +++..+..++++.++++++...++...|.+.++++   .+..+.+.+.+   ...++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45666777788899999999999999999999985   44554444444   4445555999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccChh--------HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHH
Q 017461          175 GVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG  246 (371)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  246 (371)
                      +.++++++.+++++++  ++.        .++++|+++|++.|..++...++++|++|+++|+++.++...+...|.+++
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACLP--GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999998  654        588999999999999999999999999999999999999988888888888


Q ss_pred             HHhHHHHh--------cccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhh
Q 017461          247 LAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL  318 (371)
Q Consensus       247 ~~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  318 (371)
                      +.+...+.        +.+|||++|++.++++++.. +.....||++..       +.+.       ++  +..++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~-------~~~~-------~~--~~~~~~~l~  239 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQ-------ETRA-------LK--EAGSLKGLW  239 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCchH-------HHhh-------hc--ccccHHHHH
Confidence            87765543        25799999998777665543 223333443221       1000       00  123577888


Q ss_pred             cChhHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          319 SKPPVWALIVSHFCH-NWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      ++++++...+..++. ...++.+.+|+|.|+++.+|++..+++...++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i  287 (432)
T PRK10406        240 RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTA  287 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            998888766665543 66788889999999988789998888776554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=6.9e-27  Score=215.93  Aligned_cols=242  Identities=13%  Similarity=0.194  Sum_probs=206.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      +.+..+..........+..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   89 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL   89 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            33334555667777888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhH
Q 017461          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (371)
Q Consensus       189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  268 (371)
                      ++  +++.++++|++.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+.+..|||+.|++.++
T Consensus        90 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  167 (385)
T TIGR00710        90 SN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL  167 (385)
T ss_pred             Hc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            99  9999999999999999999999999999999999999999999999999999999999999998999999999888


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017461          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  348 (371)
                      +.++..++.++..||.+..+++...++              ....+++++++++++...+...+.....+....+.|.++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (385)
T TIGR00710       168 AGILLSALIFFILPETLPYEARIQIST--------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVY  233 (385)
T ss_pred             HHHHHHHHHHHhCCCCCCCcccCCHHH--------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHH
Confidence            877777766666666543322111111              123456788999999888887777778888888999999


Q ss_pred             HHhcCCChhhhhhhhhhe
Q 017461          349 NQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       349 ~~~~g~s~~~~~~~~~~~  366 (371)
                      ++.+|+++.+++.+....
T Consensus       234 ~~~~g~~~~~~g~~~~~~  251 (385)
T TIGR00710       234 IDIMGVSPSVFGLLFALN  251 (385)
T ss_pred             HHHcCCCHHHHHHHHHHH
Confidence            888899999988876544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=9.1e-27  Score=220.49  Aligned_cols=257  Identities=13%  Similarity=0.113  Sum_probs=198.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      +++..+.......+...+....+.+..|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34455555666666666667778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh----c-
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI----H-  255 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----~-  255 (371)
                      ++.+++++++  +++.++++|++.|++.+.. .....+++|++|+++||+++|+.....++|..+++.+.+.+.    + 
T Consensus       113 ~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~  189 (476)
T PLN00028        113 PAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA  189 (476)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999  9999999999999998864 445678899999999999999998877777777766665442    2 


Q ss_pred             ----ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHH
Q 017461          256 ----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (371)
Q Consensus       256 ----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  331 (371)
                          ..|||++|++.++++++..++.+++.++.|...    ..+..   ++.+.++......+++.++++++|.+.+.++
T Consensus       190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (476)
T PLN00028        190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN----YRELK---KSGTMPKDSFSKVLRYGVTNYRTWILALTYG  262 (476)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc----hhhHH---hcCccccccHHHHHHHHHcCchhHHHHHHHH
Confidence                258999999999988877776666555444321    00100   0000011111234566788899998888877


Q ss_pred             HHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          332 CHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      +.....+.+..++|.|+.+.+|+++.+++.+.++.+
T Consensus       263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~  298 (476)
T PLN00028        263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFG  298 (476)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            777777778889999998878999999888765543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.96  E-value=5.3e-27  Score=223.44  Aligned_cols=257  Identities=14%  Similarity=0.207  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      .+..++++.++..++....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45667778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      ++++++  +++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++.+.+++|||+.|+
T Consensus        83 ~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            999999  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhcccCCCCCCCCCChHHHH---------------------------H--------------Hhhhc
Q 017461          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK---------------------------L--------------IVSSC  303 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~--------------~~~~~  303 (371)
                      +.++++++..++.++..|++++...+..+....                           .              ...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            988888777776666666543322211110000                           0              00001


Q ss_pred             cCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          304 ASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       304 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                        +++++..+ .++++++.++...+..++..+.++...+++|.|+++.+|+++.+++++....
T Consensus       241 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~  300 (485)
T TIGR00711       241 --TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPV  300 (485)
T ss_pred             --cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence              11111222 2478899999888888888889999999999999998999999999887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=1.7e-26  Score=224.88  Aligned_cols=186  Identities=15%  Similarity=0.200  Sum_probs=166.8

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      .+.+|.++++++++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            46678888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc--
Q 017461          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--  256 (371)
Q Consensus       179 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--  256 (371)
                      .+++.+++++++  +++.++++|++.|++.|+..+...++++|++|+++|++.++++..++.+|.++++.++..+...  
T Consensus       242 ~~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999  9999999999999999999999999999999999999999999999999999999888776643  


Q ss_pred             -----------cCchhHHHHHhHHHHHHHHHHhhcccCCCCC
Q 017461          257 -----------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (371)
Q Consensus       257 -----------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                                 .+||+.+++.++.+++. ++.+++.||+|+.
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrw  360 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRF  360 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHH
Confidence                       35899888877655544 4555667888763

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=1.7e-26  Score=214.94  Aligned_cols=251  Identities=14%  Similarity=0.118  Sum_probs=211.6

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      +++.++....+.+..++..+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45667777778888888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       179 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .+++.+++.+++  +++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+.+..|
T Consensus        88 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999998  999999999999999998888899999999999999999999988889999999999999999899


Q ss_pred             chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHH
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (371)
                      ||+.|++.+++.++..+..++..||++.+.++....             ++...+++.++++|.++...+..++......
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-------------KELGRDYKLVLKNRRFVAGALALGLVSLPLL  232 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            999999988888777666665566554322111000             0012345678899999988888777777777


Q ss_pred             HHHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          339 ILLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       339 ~~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                      .+.++.|.|+.+.+|+++.+.+....
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~  258 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQV  258 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHH
Confidence            77788899988878999988877644

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.95  E-value=1.8e-26  Score=212.93  Aligned_cols=241  Identities=15%  Similarity=0.237  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  185 (371)
                      +....+..+..........+.+|.+++++|.+..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            34455566677777778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHH
Q 017461          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      +++++  |++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++++++.+.+..|||+.|++
T Consensus        85 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            99999  9999999999999999988888889999999999999999999999999999999999999998999999999


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      .+++.++..+..+++.|+.+++.+. ..                 ...+ +.++++.+|...+..++...+.+....+++
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAKG-GL-----------------REQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIK  223 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc-CH-----------------HHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988777766666666664321110 00                 0112 356777777766666666666666677788


Q ss_pred             HHHHHhcCCChhhhhhhhhhee
Q 017461          346 TYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       346 ~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      .|+.+.+|+++.+.+++.+..+
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~  245 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVG  245 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHH
Confidence            8888778999999988776544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=1.6e-26  Score=217.80  Aligned_cols=264  Identities=15%  Similarity=0.215  Sum_probs=200.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      ++|.++..+++.....++++..++...|.+.++ |++..+.+++.+++.++.++++++.|+++||+|||++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            456666666667777777777778888998888 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhc--cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHH-HHHHhHHHHhccc
Q 017461          181 IATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV-TGLAFSPFLIHRF  257 (371)
Q Consensus       181 i~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~  257 (371)
                      ++.+++++++.  .+++.++++|++.|++.+...+.....+.|++|+++|+++++++..+.++|.. ++|+++..+....
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  184 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN  184 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            99988887631  16788999999999999988888888899999999999999999999999864 4555544444445


Q ss_pred             CchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhh---ccCCCCcccch--hhhhhcChhHHHHHHHHHH
Q 017461          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS---CASKEPVKTIP--WGLILSKPPVWALIVSHFC  332 (371)
Q Consensus       258 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~  332 (371)
                      |||+.|++.+++.++..++.+++.+|+++.......++.+....+   ..++++.+..+  .+.++|++.+|...+..++
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            999999999888877777766667776543211111111000000   00001000111  2336788999998888888


Q ss_pred             HHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          333 HNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       333 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      .....+....|+|.|+++.+|++..+++.+...
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~  297 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL  297 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            888888899999999999889998888766543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.95  E-value=2.3e-27  Score=216.29  Aligned_cols=248  Identities=27%  Similarity=0.500  Sum_probs=200.1

Q ss_pred             HHHHHHHHhhhhhhhhhhh-hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          110 FSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      +++.++..+......+..| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4556677777778888888 899999999999999999999999999999999999999999999999999999777667


Q ss_pred             hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhH
Q 017461          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (371)
Q Consensus       189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  268 (371)
                      ++  +.+.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+..|||+.|++.++
T Consensus        82 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 AS--NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hh--hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            67  8889999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccch-hhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      +.++.+++...+.++++.++....+.+++       .+.+....+ ++.+++++.+|...+..++..+.......++|.|
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY  232 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence            98888776545555444433222221110       000111223 6777888888766666666667888899999999


Q ss_pred             HHHhcCCC-hhhhhhhhhhe
Q 017461          348 YNQVSSFG-SKTLSETVQVC  366 (371)
Q Consensus       348 l~~~~g~s-~~~~~~~~~~~  366 (371)
                      +.+.+|++ ..+.+.+....
T Consensus       233 l~~~~~~~~~~~~~~~~~~~  252 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIF  252 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHH
Confidence            88888999 78887655443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=6.1e-29  Score=220.71  Aligned_cols=246  Identities=18%  Similarity=0.231  Sum_probs=212.1

Q ss_pred             cCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHH
Q 017461           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (371)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  177 (371)
                      ..+..++.+.++++...++.++.+.+.-..+.+++.||++++..|++.+++.+++++++|++|+++|||+||+++.+|..
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~  106 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF  106 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence            34456777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       178 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      +++++.++++++.  .+|+++++|.+.|+|.+...++++++++|.||.++|++++++++.+..+|..+|.+.+..+.+..
T Consensus       107 iW~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  107 IWTLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            9999999999998  99999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             C-chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHH
Q 017461          258 G-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG  336 (371)
Q Consensus       258 g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  336 (371)
                      + |||.|++.++++++++++.+++.+|+++...++.+.+.+.     .........+.+.+.+++.+....+.+....+.
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv  259 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV  259 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----CCCccchHHHHHHHHccCceeeehHHHHHHHHh
Confidence            6 9999999999999999999999988876533322221110     111222245666677778888777777777777


Q ss_pred             HHHHHHhhHHHHHH
Q 017461          337 TFILLTWMPTYYNQ  350 (371)
Q Consensus       337 ~~~~~~~~~~~l~~  350 (371)
                      ...+..|.|.++..
T Consensus       260 ~Gs~sww~p~~~~~  273 (493)
T KOG1330|consen  260 IGSLSWWAPAFIYY  273 (493)
T ss_pred             ccccchhhhhHHHH
Confidence            77777777777654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.95  E-value=1.8e-26  Score=213.57  Aligned_cols=244  Identities=14%  Similarity=0.219  Sum_probs=196.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      ..|.....++.+.+..... ..+++.+|.+++++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             hHHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            3455555555554443333 667899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc-Cc
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GW  259 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw  259 (371)
                      ++.+++++++  +++.++++|+++|+|.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +|
T Consensus        86 ~~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w  162 (393)
T PRK09705         86 VGALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW  162 (393)
T ss_pred             HHHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            9999999999  99999999999999999999999999999996 88999999999999999999999999988875 89


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHH
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                      |+.+.+.++..++..+..+...++.+..+++                ++   ....+.++++++|.+.+..++....++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~  223 (393)
T PRK09705        163 YQTLAWWALPAVVALFAWWWQSAREVASSHK----------------TT---TTPVRVVFTPRAWTLGVYFGLINGGYAS  223 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccccC----------------CC---cCCcccccCHhHHHHHHHHHHHHHHHHH
Confidence            9988776665544433333222222211000                00   0112356788888888888788888889


Q ss_pred             HHHhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          340 LLTWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       340 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      ...|+|.|+++ +|++..+++.+.+..++
T Consensus       224 ~~~~lp~~l~~-~g~s~~~ag~~~~~~~i  251 (393)
T PRK09705        224 LIAWLPAFYIE-IGASAQYSGSLLALMTL  251 (393)
T ss_pred             HHHHHHHHHHH-cCCChhhhhHHHHHHHH
Confidence            99999999988 79999999988765543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=3.4e-26  Score=212.97  Aligned_cols=254  Identities=22%  Similarity=0.307  Sum_probs=207.9

Q ss_pred             cCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHH
Q 017461           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (371)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  177 (371)
                      ..+++|.++.++++..++.+++....+...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       178 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      +.+++.+++.+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..
T Consensus        89 ~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551         89 LFGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            9999999999998  99999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhc---ChhHHHHHHHHHHHH
Q 017461          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS---KPPVWALIVSHFCHN  334 (371)
Q Consensus       258 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~  334 (371)
                      +||+.|++.+++.++.+++...+.||++....+....+.         +    ....+.+++   .+..+.+.+..++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (406)
T PRK11551        167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ---------R----APVLRALFGEGRATATLLLWISYFFTL  233 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---------h----hhhHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            999999998877776666666666765432211100000         0    011112222   223344445555556


Q ss_pred             HHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          335 WGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       335 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ...+....|+|.|+++ .|+++.+++.+.+..+
T Consensus       234 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~  265 (406)
T PRK11551        234 IVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFN  265 (406)
T ss_pred             HHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHH
Confidence            6677788899999988 6999998888776543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.95  E-value=2.9e-27  Score=217.60  Aligned_cols=253  Identities=17%  Similarity=0.223  Sum_probs=208.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhc
Q 017461          112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (371)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  191 (371)
                      +++..+++...++...|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence            4566777888899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHH-HhHHHHhcccCchhHHHHHhHHH
Q 017461          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL-AFSPFLIHRFGWPSVFYSFGSLG  270 (371)
Q Consensus       192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~gw~~~f~~~~~~~  270 (371)
                       +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+..+||+.|++.+++.
T Consensus        82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999 57777778889999999988888


Q ss_pred             HHHHHHHhhcccCCCCCCCCCChHHHHHH-----hhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          271 TVWFTVWLSKAHSSPAEDPQLRPAEKKLI-----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      ++..++.+++.++++........++....     .++.+++.......++.+++++.++.+.+..++.......+..++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP  240 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666665543211111000000     0000011111223456788899999998888888888899999999


Q ss_pred             HHHHHhcCCChhhhhhhhhhe
Q 017461          346 TYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       346 ~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      .|+.+.+|+++.+++.+....
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~  261 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLY  261 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHH
Confidence            999988899999888776554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.95  E-value=3.4e-26  Score=212.63  Aligned_cols=266  Identities=15%  Similarity=0.202  Sum_probs=200.5

Q ss_pred             cCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHH
Q 017461           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (371)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  177 (371)
                      ..+++|+.+..++++.+...++....++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34577888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       178 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      +.+++.+++++++  +++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..
T Consensus        86 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        86 LFSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999  99999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C--chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHH-HHHHhhhccCCCCccc-------chhhhhh-cCh-hHHH
Q 017461          258 G--WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE-KKLIVSSCASKEPVKT-------IPWGLIL-SKP-PVWA  325 (371)
Q Consensus       258 g--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~l~-~~~-~~~~  325 (371)
                      +  ||+.|++.++..++.. +.....||++....+....+ ......+....++...       ...++.. +++ .+..
T Consensus       164 ~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (405)
T TIGR00891       164 GDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVY  242 (405)
T ss_pred             CccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHH
Confidence            6  9999988665544433 33344455433211111000 0000000000000000       0011111 111 1223


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          326 LIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      +.+...+..........++|.|+.+.+|++..+++.+.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  283 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFS  283 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHH
Confidence            33344444555566778889999888899999988876544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.95  E-value=1.1e-25  Score=214.09  Aligned_cols=255  Identities=16%  Similarity=0.159  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcch-HHH-----HHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHH
Q 017461          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT-VGL-----IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (371)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  176 (371)
                      +..+..+.++.++.++|..+++...|.+.++++.+.+. .++     +.++..++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566778899999999999999999999999754422 222     246778999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccChhH--------HHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017461          177 VWWSIATALTPVAAKLGLPF--------LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (371)
Q Consensus       177 ~~~~i~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  248 (371)
                      ++++++.+++++++  |++.        ++++|+++|+|.|+.++...++++|++|+++||++.++...+..+|.++|+.
T Consensus        95 ~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  8764        8899999999999999999999999999999999999999888888888886


Q ss_pred             hHHHHh--------cccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcC
Q 017461          249 FSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK  320 (371)
Q Consensus       249 ~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  320 (371)
                      +...+.        ..+|||++|++.++++++ .+++....||+|.........++    .+.+...+.+..++++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  247 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ----GDREGLQDGPKVSFKEIATK  247 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh----hccccccccccCCHHHHHHH
Confidence            665443        257999999997765554 33334456665442111000000    00000011123456666653


Q ss_pred             -hhHH-HHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          321 -PPVW-ALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       321 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                       ++.+ ......++..+.++.+..|+|.|+++.+|++..+.+++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~  293 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIII  293 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence             2322 2333344556778888999999998878998877665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.95  E-value=9.2e-26  Score=208.07  Aligned_cols=243  Identities=13%  Similarity=0.099  Sum_probs=196.9

Q ss_pred             CCCCCCCCccccCCh-hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017461           87 VDSESLVPWWEEFPK-RWFIVVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD  164 (371)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d  164 (371)
                      .++|++.-|.++.++ .++.+.+..++.++......+++++.+.+.+ ++|++.+|.+++.+++.+++.++.++.|++.|
T Consensus        16 w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D   95 (462)
T PRK15034         16 WKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP   95 (462)
T ss_pred             CCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444334333332 4567777888888888888999999998876 89999999999999999999999999999999


Q ss_pred             hhCCchhHHHHHHHHHHHHHHhhhh-----hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHH
Q 017461          165 TVGGKAVLGFGVVWWSIATALTPVA-----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM  239 (371)
Q Consensus       165 r~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  239 (371)
                      |+|.|+++.++.+++++..++.+++     +  +++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....
T Consensus        96 r~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~--s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G  172 (462)
T PRK15034         96 IFGGRRWTVFSTAILIIPCVWLGIAVQNPNT--PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLG  172 (462)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHcccCC--CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHH
Confidence            9999999999999999999999987     6  899999999999998 6688999999999999999999999998777


Q ss_pred             HHHHHHHHHhHHHHh-----c-------------ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhh
Q 017461          240 YLGSVTGLAFSPFLI-----H-------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS  301 (371)
Q Consensus       240 ~~g~~~g~~~~~~l~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (371)
                      ++|..++++++..+.     .             ..+|+.++++.+++.++..++.+++.++.+..+.            
T Consensus       173 ~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~------------  240 (462)
T PRK15034        173 NLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA------------  240 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc------------
Confidence            777776666554433     2             2347888888888877777777766554332110            


Q ss_pred             hccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 017461          302 SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVS  352 (371)
Q Consensus       302 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (371)
                              ........+|+|+.|.+++.+++.+.++.++.+++|.|+++.+
T Consensus       241 --------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~  283 (462)
T PRK15034        241 --------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF  283 (462)
T ss_pred             --------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                    0223456899999999999999999999999999999998865

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=1.5e-26  Score=224.31  Aligned_cols=261  Identities=15%  Similarity=0.205  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      +.+++..+...+.....+..++.++++|+++..+.|++.+.+.++++++.++.|++.||+|||+.+.+++++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            34445666666777888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhh-------------------------------------------------ccChhHHHHHHHHHHhhhhchhhhHHH
Q 017461          187 PVAA-------------------------------------------------KLGLPFLLVVRVFMGIGEGVAMPAMNN  217 (371)
Q Consensus       187 ~~~~-------------------------------------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~  217 (371)
                      ++.+                                                 ...+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            8763                                                 002556788999999999999999999


Q ss_pred             HHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc----------------------CchhHHHHHhHHHHHHHH
Q 017461          218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF----------------------GWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       218 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------gw~~~f~~~~~~~~~~~~  275 (371)
                      ++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643                      267778888888777766


Q ss_pred             HHhhcccCCCCCCCCCChH-HHHHHhhh-ccCC-------CCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          276 VWLSKAHSSPAEDPQLRPA-EKKLIVSS-CASK-------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      +++++.++.|......+.+ ++.....+ ....       .+.....++.++++|.++...+..++....++++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555544433321111100 00000000 0000       0011234677999999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhhhhee
Q 017461          347 YYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      |+++.+|+++.++++++....
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~  376 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVN  376 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhh
Confidence            999999999999988876543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=2.3e-26  Score=211.47  Aligned_cols=240  Identities=19%  Similarity=0.257  Sum_probs=193.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhh
Q 017461          111 SAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA  190 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  190 (371)
                      +...+.....+.+++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~   89 (377)
T TIGR00890        10 VIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD   89 (377)
T ss_pred             HHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH
Confidence            33333334466788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHH
Q 017461          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (371)
Q Consensus       191 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~  270 (371)
                        +++.++++|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..|||+.|++.+++.
T Consensus        90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~  166 (377)
T TIGR00890        90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIF  166 (377)
T ss_pred             --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence              99999999999999999888888888999996 689999999999999999887777777777889999999999988


Q ss_pred             HHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017461          271 TVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ  350 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (371)
                      ++..++.+++.++++.+..+.+.            +...+....+++++++.++...+..++..........+.+.|.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (377)
T TIGR00890       167 LLVIVLGAFLIGYPPGQLIKTNI------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS  234 (377)
T ss_pred             HHHHHHHHHheecCchhccccCc------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88777766666554332111000            000112245678889999888777777766666666777777766


Q ss_pred             hcCCChhhhhhhhhhe
Q 017461          351 VSSFGSKTLSETVQVC  366 (371)
Q Consensus       351 ~~g~s~~~~~~~~~~~  366 (371)
                       +|++..+.+.+.+..
T Consensus       235 -~~~~~~~~~~~~~~~  249 (377)
T TIGR00890       235 -LGLSDGFLVLAVSIS  249 (377)
T ss_pred             -cCCCHHHHHHHHHHH
Confidence             688888777665544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=7.2e-26  Score=212.13  Aligned_cols=259  Identities=15%  Similarity=0.217  Sum_probs=198.9

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +.++..+..+++..+..+++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45666778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +++.+++++++  +++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..||
T Consensus        94 ~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHH---HHHHH
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF---CHNWG  336 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~  336 (371)
                      |+.|++.++..+ ..+......|+++....+    +.....+......+.....++++++++.++.......   +....
T Consensus       172 ~~~f~i~~~~~~-~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T PRK12307        172 RAAFFVGLLPVL-LVIYIRARAPESKEWEEA----KLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGA  246 (426)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHCCCChHHHHh----hhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence            999987543322 222222222322111000    0000000000000111235677888888765443332   23334


Q ss_pred             HHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          337 TFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       337 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      .+.+..++|.|+++ .|+++.+.+.+.+..
T Consensus       247 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~  275 (426)
T PRK12307        247 NWPIFGLLPTYLAG-EGFDTGVVSNLMTAA  275 (426)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            44567789999988 599988888765543

>PRK03699 putative transporter; Provisional

Probab=99.95  E-value=1.3e-25  Score=208.17  Aligned_cols=245  Identities=15%  Similarity=0.191  Sum_probs=199.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      .+++..+.+++..++.+......++.+|.+.+++|++.++.+++.+.+.+++.+++++.|++.||+|||+++.++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34566667778888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-ccCc
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGW  259 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw  259 (371)
                      ++.+++++++  +++.+++.|+++|++.+...+...+++.|++|+++|+.++++......+|..++|.+.+.+.. ..||
T Consensus        84 i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            9999999998  999999999999999998888899999999999999999999999999999999999888764 5799


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHH
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                      |+.|++.+++.++..++.++.  +.|..+++..  ++         +++.    .+. ..++.++...+..++....++.
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~--~~---------~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~  223 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAP--KA---------DKPV----AKE-KWGIGVLFLAIAALLYILAQLT  223 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCc--cc---------cCcc----ccc-cCChHHHHHHHHHHHHHHHHHH
Confidence            999999888777665544432  2121111100  00         0000    011 1246677777777777778888


Q ss_pred             HHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          340 LLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       340 ~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      +..|+|.|+++.+|+++.+++.+.+.
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~~  249 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVSN  249 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHHH
Confidence            99999999988889999999887654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=8.4e-26  Score=212.80  Aligned_cols=267  Identities=12%  Similarity=0.134  Sum_probs=206.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHH
Q 017461           97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (371)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  176 (371)
                      +...++|.++..+++...........++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++++.
T Consensus        12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   91 (455)
T TIGR00892        12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG   91 (455)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence            44456788888888877766666667888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccChhHHHH-HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          177 VWWSIATALTPVAAKLGLPFLLV-VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       177 ~~~~i~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      ++.+++.+++++++  +++.+++ .|++.|++.+...+...+++.++++ ++|++++++...+..+|..++|++++.+.+
T Consensus        92 ~~~~~~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892        92 LLASLGMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             HHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999998  8888865 4799999999877777888899995 899999999999999999999999999999


Q ss_pred             ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHH---H-Hhhh--c--cCCCCcccchhhhhhcChhHHHHH
Q 017461          256 RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK---L-IVSS--C--ASKEPVKTIPWGLILSKPPVWALI  327 (371)
Q Consensus       256 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~  327 (371)
                      .+|||+.|++.+++.++..++.++..++.+.++....+.++.   . ...+  .  ..++..+..++ +++++|.++...
T Consensus       169 ~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  247 (455)
T TIGR00892       169 SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYL  247 (455)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHH
Confidence            999999999999887766555444433322110000000000   0 0000  0  00000011122 478899999888


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          328 VSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      +..++...+++...++++.|+++ +|++..++++++++.++
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~  287 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGF  287 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence            88888888888888999999987 69999999988776543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=4.7e-25  Score=204.47  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=202.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHH
Q 017461          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  181 (371)
                      .++.+.++.+..++..+......+.+|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            34445555555556666777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchh
Q 017461          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (371)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  261 (371)
                      +.+++.+++  +++.+++.|++.|++.+...+....+..|.+++++++++.++...+..+|..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            999999988  999999999999999988888888899999999999999999999999999999999999999899999


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 017461          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (371)
Q Consensus       262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  341 (371)
                      .|++.+++.++..++..++.||++..++++  .+              ....++++++++.++...+..+........+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADARR--TR--------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccch--hH--------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999988877766665555566654322111  00              12356678889988877666666666667777


Q ss_pred             HhhHHHHHHhcCCChhhhhhhhh
Q 017461          342 TWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       342 ~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                      .+.+.++++.+|+++.+.+++..
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~  250 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFI  250 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHH
Confidence            78888998888999988887654

>PRK10504 putative transporter; Provisional

Probab=99.94  E-value=4.6e-25  Score=209.33  Aligned_cols=256  Identities=15%  Similarity=0.197  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      .+++++++.++..++.+.+.+..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34556667788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      ++.+++  +++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..|||+.|+
T Consensus        91 ~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            999988  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhcccCCCCCCCCCChHHHH----------------H-----------------------HhhhccC
Q 017461          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK----------------L-----------------------IVSSCAS  305 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-----------------------~~~~~~~  305 (371)
                      +.+.+..+..++.....|+.+....+.+.....                .                       ..+++  
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  246 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR--  246 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh--
Confidence            988777766666665555443322211110000                0                       00011  


Q ss_pred             CCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          306 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       306 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      ..+.+..+. +++|+|.++...+..++..........+.|.|++..+|.++.++++++..
T Consensus       247 ~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~  305 (471)
T PRK10504        247 NNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIP  305 (471)
T ss_pred             cCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            111223344 37899999998888888888887788889999998789999999877654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.2e-26  Score=212.08  Aligned_cols=263  Identities=19%  Similarity=0.336  Sum_probs=221.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhh-hhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          102 RWFIVVLCFSAFLLCNMDRVNMS-IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      .++++..++..++....+...++ ..+-.+.+|.+....+++.+.+++.++++++.+++|.+.||++-.+.+....++++
T Consensus        43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence            34555566666677777765554 33444779999999999999999999999999999999999998888888888888


Q ss_pred             HHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh------
Q 017461          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI------  254 (371)
Q Consensus       181 i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------  254 (371)
                      +..++.....  |++.+++.|++.|+.+++.+|....+++.|+.+++|++.+|++.+...+|.++|.+++..+.      
T Consensus       123 ~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  123 LFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence            8888888888  99999999999999999999999999999999999999999999999999999999998863      


Q ss_pred             cccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhc------cCCCCcccchhhhhhcChhHHHHHH
Q 017461          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC------ASKEPVKTIPWGLILSKPPVWALIV  328 (371)
Q Consensus       255 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~  328 (371)
                      ...||||.|++.+++.++..+++++++|+.|.+..-..++|+....++.      ...++.+...+++.+++|.+|..++
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l  280 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSL  280 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHH
Confidence            3579999999999999999999999999999876555555532221111      1112245678889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          329 SHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      +.++.....+++.+|+|.|+.+..|++..++..+....
T Consensus       281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~  318 (495)
T KOG2533|consen  281 CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPY  318 (495)
T ss_pred             HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchH
Confidence            99999999999999999999996679888888775543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=1.6e-25  Score=210.38  Aligned_cols=264  Identities=14%  Similarity=0.214  Sum_probs=202.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHH
Q 017461          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  181 (371)
                      ++..+..+.+.+...+.+...+....|.+++ +|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4566666667777777777777777888776 599999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhc--cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh-cccC
Q 017461          182 ATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFG  258 (371)
Q Consensus       182 ~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g  258 (371)
                      +.+++++.+.  .+++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+.+. ...|
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            9888776521  167788899999999999988989999999999999999999999999999999988877544 4579


Q ss_pred             chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHH-hhh--ccCCCC--cccchhhhhhcChhHHHHHHHHHHH
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI-VSS--CASKEP--VKTIPWGLILSKPPVWALIVSHFCH  333 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~  333 (371)
                      ||+.|++.++++++..++.+++.+|++........++.+.. ..+  .+.+++  .+....+.++|++.+|...+..++.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFV  263 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHH
Confidence            99999999988888777666666765543211110000000 000  000000  0011123468899999888888888


Q ss_pred             HHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          334 NWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       334 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ....++..+++|.|+++.+|+++.+++++....
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~  296 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLY  296 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHH
Confidence            888888999999999998899999888876544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.94  E-value=2.8e-25  Score=204.79  Aligned_cols=235  Identities=16%  Similarity=0.232  Sum_probs=198.6

Q ss_pred             hhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHH
Q 017461          119 DRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLL  198 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~  198 (371)
                      ...++.+.+|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++.+++  +++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHH
Confidence            345567889999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                      ++|++.|++.+...+...+++.|++++++|++++++......+|..++|.+++.+.+..|||+.|++.+++.++..++..
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999989999999998888877777666


Q ss_pred             hcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhh
Q 017461          279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKT  358 (371)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~  358 (371)
                      ++.+|++.++++.+.+.            +....+++++++++.++...+..++...+.+.+..+.|.++.+.+|+++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  231 (377)
T PRK11102        164 FFIPETLPKERRQPFHL------------RTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN  231 (377)
T ss_pred             HhCCccCcccccCCCCh------------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence            66666433221110000            001234566888998888777777777777888888888888878999999


Q ss_pred             hhhhhhhee
Q 017461          359 LSETVQVCT  367 (371)
Q Consensus       359 ~~~~~~~~~  367 (371)
                      ++.+....+
T Consensus       232 ~g~~~~~~~  240 (377)
T PRK11102        232 FGYYFALNI  240 (377)
T ss_pred             HHHHHHHHH
Confidence            988776543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.94  E-value=8.4e-25  Score=202.66  Aligned_cols=242  Identities=18%  Similarity=0.211  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      ...+..+..........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++.++.++.+++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            44444555555556666889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHh
Q 017461          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (371)
Q Consensus       188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  267 (371)
                      +++  +++.+++.|+++|++.+...+...+++.|++++++|+++.++......+|..++|.+++.+.+..||++.|++.+
T Consensus        87 ~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473         87 LAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             HhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence            998  999999999999999999899999999999999999999999999999999999999999888899999999998


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      ++.++..++.+...+|++.++.+....               .....++.++++.++...+...+.......+..+.|.+
T Consensus       165 ~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (392)
T PRK10473        165 AMGILVLLLSLFILKETRPARAPAASS---------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVL  229 (392)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccCCccc---------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            888877777666666654322111000               01233456788888766666555555556667777888


Q ss_pred             HHHhcCCChhhhhhhhhhe
Q 017461          348 YNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       348 l~~~~g~s~~~~~~~~~~~  366 (371)
                      +++.+|+++.+.+.+.+..
T Consensus       230 ~~~~~g~~~~~~~~~~~~~  248 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALT  248 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHH
Confidence            8887899998888766543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.94  E-value=4e-25  Score=202.83  Aligned_cols=254  Identities=13%  Similarity=0.148  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      ..++..++.......+.+..|. +++++|++..+.+++.+++.+++++++++.|+++||+|||+.+.++.++.+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4555666666777788899995 999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc----------c
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------R  256 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~  256 (371)
                      ++++. +++.+++.|+++|++.+ ..+...++++|++|+++|++++++...+.++|..+++.+++.+..          .
T Consensus        85 ~~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 GLAVQ-SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             HHHhh-hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            88753 68889999999999965 456678899999999999999999998888888888877776654          2


Q ss_pred             cCchhHH-HHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHH
Q 017461          257 FGWPSVF-YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNW  335 (371)
Q Consensus       257 ~gw~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  335 (371)
                      .+||+.| +..+++.++..++.+...++.+..+++..+.+..   ......++.......+++++++++...+..++...
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK---GARWSVGTGALGDQLKVFRDRHTWILALLYSVTFG  239 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc---cccccccchhHHHHHHHHhccchhhHHHHHHHHHH
Confidence            4899999 4445555555555555555544322111100000   00000000111145668889999988888888877


Q ss_pred             HHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          336 GTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       336 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ..+.+..++|.|+++.+|+++.+++.+....
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  270 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLG  270 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            8888899999999998999999998766543

>PRK10133 L-fucose transporter; Provisional

Probab=99.94  E-value=1.4e-24  Score=203.22  Aligned_cols=251  Identities=17%  Similarity=0.220  Sum_probs=192.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHH
Q 017461          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  181 (371)
                      ....+..+++.+++..+......+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44455666677777788888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-c-
Q 017461          182 ATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-R-  256 (371)
Q Consensus       182 ~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~-  256 (371)
                      +.+++   .+++  +++.++++|+++|+|.|...+..++++.|+.++++|+..+++.+..+.+|..+++.+++.+.. . 
T Consensus       104 ~~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99876   4567  999999999999999999999999999998877777778999999999999999999876541 0 


Q ss_pred             ------------------------cCchhHHHHHhHHHH-HHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCccc
Q 017461          257 ------------------------FGWPSVFYSFGSLGT-VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKT  311 (371)
Q Consensus       257 ------------------------~gw~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (371)
                                              .+||++|+..+.+.. +..++.....|+.+.+++.  + +          +.....
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--~-~----------~~~~~~  248 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--D-A----------KQGSFS  248 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c-c----------cccchh
Confidence                                    245666654343333 3222222323332111000  0 0          000112


Q ss_pred             chhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhcCCChhhhhhhhhhee
Q 017461          312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY-NQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~s~~~~~~~~~~~~  367 (371)
                      ...++++++|.++...+..++.....++...|++.|+ ++.+|+++.++++.+....
T Consensus       249 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~  305 (438)
T PRK10133        249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_pred             hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Confidence            3456788999998877777887788888888899885 5668999999998766543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.9e-25  Score=195.13  Aligned_cols=250  Identities=16%  Similarity=0.163  Sum_probs=218.7

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +.+.+.+.+..+...+......+++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||||.|++..++.++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            34556677777777777788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc-ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          180 SIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       180 ~i~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .+-++..+++... ++|++++++++.|++ |..+....+.++++||++++|.++|++. ..|+|..+..+++..+....|
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            9999999998732 456999999999999 5567899999999999999999999999 999999999999999998888


Q ss_pred             ---chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHH
Q 017461          259 ---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNW  335 (371)
Q Consensus       259 ---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  335 (371)
                         |+.+..+..+..++..++.++...|.+..+...++..               ...++.++++++.|.+++.++..+.
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------~~~~~~v~~~~~~W~lsllY~~tFG  232 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------PAQLKAVFSNKDTWLLSLLYFATFG  232 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------hhHHHHHhcCcchHHHHHHHHHHHH
Confidence               9999999999988888998888888776432222111               1345678899999999999999999


Q ss_pred             HHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          336 GTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       336 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ++.++..++|.|+++.+|.++.++|.+...+
T Consensus       233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f  263 (417)
T COG2223         233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLF  263 (417)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence            9999999999999999999999998776544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=1.3e-24  Score=198.97  Aligned_cols=247  Identities=15%  Similarity=0.098  Sum_probs=197.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh
Q 017461          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (371)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  189 (371)
                      ++..++..+......+.+|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            44556666667777888889999999999999999999999999999999999999999999999999988888777665


Q ss_pred             hc---cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          190 AK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       190 ~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      ..   .+++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++||.+++.+.+..|||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            41   268999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHhhcc-cCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHH-Hhh
Q 017461          267 GSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWM  344 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (371)
                      ++..++..++.+... ++++..+.+..+++..          ++....++.++|+|.++...+..++......... .+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAASEIQALSNAVL----------RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF  234 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCCccccccchhHH----------HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            776665554444332 2222111111000000          0012346678889999888888887777776666 888


Q ss_pred             HHHHHHhcCCChhhhhhhhhhe
Q 017461          345 PTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       345 ~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      |.|.++.+|++..+.+.+....
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~  256 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAF  256 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHH
Confidence            9999887899999988776554

>PRK11043 putative transporter; Provisional

Probab=99.94  E-value=2.5e-24  Score=200.13  Aligned_cols=231  Identities=18%  Similarity=0.218  Sum_probs=192.3

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhcc
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  192 (371)
                      .++..+...++.+..|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++.+++  
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--
Confidence            444445566777888999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHH
Q 017461          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (371)
Q Consensus       193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~  272 (371)
                      +++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.+|||+.|++.+++.++
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  172 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL  172 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            99999999999999988888888899999999999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 017461          273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVS  352 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (371)
                      ..++.++..++++. +++  +               .+..+++++++++.++...+...+....++.+..+.|.++++ +
T Consensus       173 ~~~~~~~~~~~~~~-~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~  233 (401)
T PRK11043        173 LILPTLRLKPSKKA-RKQ--S---------------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-M  233 (401)
T ss_pred             HHHHHHHcCCCCCc-ccc--c---------------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-c
Confidence            66665544333221 110  0               012356778889988877666666666777788889999877 7


Q ss_pred             CCChhhhhhhhh
Q 017461          353 SFGSKTLSETVQ  364 (371)
Q Consensus       353 g~s~~~~~~~~~  364 (371)
                      |+++.++++...
T Consensus       234 g~s~~~~g~~~~  245 (401)
T PRK11043        234 GYSPADIGLSYV  245 (401)
T ss_pred             CCCHHHHHHHHH
Confidence            999998887543

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=3.5e-25  Score=205.20  Aligned_cols=264  Identities=23%  Similarity=0.388  Sum_probs=203.0

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +++|..+..+++..+..+++........|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            44566777777777888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +++.+++.+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        93 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999998  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHH----hhh----c---cCCC----CcccchhhhhhcC---h
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI----VSS----C---ASKE----PVKTIPWGLILSK---P  321 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~---~~~~----~~~~~~~~~l~~~---~  321 (371)
                      ++.|++.+++.++..++.+.+.|+++....+.++++....    ..+    .   ..++    +.....++.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            9999998777777666666666765442211111110000    000    0   0000    0011112223332   3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ..+.+.+..++....++....++|.+..+ +|+++.+++.+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~  294 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALF  294 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            34444555556666777788888855554 799998888776544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.93  E-value=2.3e-24  Score=202.21  Aligned_cols=247  Identities=12%  Similarity=0.108  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHH-HHHH-----HHHHHHHHHHHHHhhhhhCCchhHHHH
Q 017461          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI-QSSF-----FWGYLLTQIAGGIWADTVGGKAVLGFG  175 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~  175 (371)
                      |++....++++.++.++|...++...|.+.++++.++.+.+.+ .+..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4557888899999999999999999999999999888776543 3322     222346889999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccChh--------HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017461          176 VVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (371)
Q Consensus       176 ~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (371)
                      .++++++.+++++++  +++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++
T Consensus        93 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999  876        4688999999999999999999999999999999999999999888888888


Q ss_pred             HhHHHHh--------cccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhc
Q 017461          248 AFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS  319 (371)
Q Consensus       248 ~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  319 (371)
                      .+++.+.        +.+|||++|++..+... .........||.+       +...+    +.  + ......++...+
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~-~~~~~~~~~~e~~-------~~~~~----~~--~-~~~~~~~~~~~~  235 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVP-FIFLIRRSLEETE-------EFLAR----KH--R-PSMREIFRSLAA  235 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHH-HHHHHHHhcCCCH-------HHHHh----hh--c-cccccHHHHHHH
Confidence            8877763        46899999987543321 1111111112110       00000    00  0 011122344455


Q ss_pred             ChhHHHH-HHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          320 KPPVWAL-IVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       320 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      +++.+.. .+..++....++....|.|.|+++.+|++..+++++...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~  282 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLC  282 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            5555543 333444566677888999999998889998887766543

>PRK09952 shikimate transporter; Provisional

Probab=99.93  E-value=1e-23  Score=197.80  Aligned_cols=245  Identities=17%  Similarity=0.192  Sum_probs=181.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhh-hhhhc--CCCcchHHHHH-----HHHHHHHHHHHHHHHHhhhhhCCchhH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEF--NWNPATVGLIQ-----SSFFWGYLLTQIAGGIWADTVGGKAVL  172 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~  172 (371)
                      +++..+...+++.+.++++...++.+.|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34557778888999999999999888775 56665  66665 45553     344566778999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccChh--------HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHH
Q 017461          173 GFGVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV  244 (371)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  244 (371)
                      .++.++++++.+++++++  +++        .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         98 MLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999  876        5888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhc--------ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhh
Q 017461          245 TGLAFSPFLIH--------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGL  316 (371)
Q Consensus       245 ~g~~~~~~l~~--------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (371)
                      ++..+...+..        .+|||++|++.+++.++. +......||+++..      +..   .+.+ +.+.+....+.
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~------~~~---~~~~-~~~~~~~~~~~  244 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFE------QQQ---HEQA-AAKKRIPVIEA  244 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHH------HHH---hhcc-cccccCCHHHH
Confidence            98877776552        479999999877665432 22222334433210      000   0000 00001112334


Q ss_pred             hhcChhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHhcCCChhhh
Q 017461          317 ILSKPPVWALIV-SHFCHNWGTFILLTWMPTYYNQVSSFGSKTL  359 (371)
Q Consensus       317 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~  359 (371)
                      ++++++.+...+ ..++..+..+....|.|.|+++.+|++....
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~  288 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELF  288 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            667777765544 4555666778888999999988889888744

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=4.4e-24  Score=203.10  Aligned_cols=186  Identities=17%  Similarity=0.250  Sum_probs=159.2

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc--------CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF--------NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV  171 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  171 (371)
                      +...+.++++.++.+..+++...+++..+.+++++        +.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34566677777888999999999999999888887        8888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh---------hc-cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH
Q 017461          172 LGFGVVWWSIATALTPVA---------AK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL  241 (371)
Q Consensus       172 ~~~~~~~~~i~~~~~~~~---------~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  241 (371)
                      ++++.++++++.++++++         ++ ..++.++++|+++|++.|+..+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            999999999998887763         10 03567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHh--------cccCchhHHHHHhHHHHHHHHHHhhcccCCCC
Q 017461          242 GSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       242 g~~~g~~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                      |.++++.+++.+.        +..|||++|++.+++.++..++ .++.||+++
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~  219 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR  219 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence            9999988876554        3569999999988777766544 455677664

>TIGR00897 2A0118 polyol permease family

Probab=99.93  E-value=1.2e-23  Score=195.34  Aligned_cols=240  Identities=13%  Similarity=0.136  Sum_probs=181.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh---h
Q 017461          112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---V  188 (371)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~  188 (371)
                      +.++...........++.+.+++|++..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.   +
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~  100 (402)
T TIGR00897        21 GVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL  100 (402)
T ss_pred             HHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333333344456667788999999999999999999999999999999999999999999999998876653   2


Q ss_pred             -hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHH-HHHHHhHHHHhcccCchhHHHHH
Q 017461          189 -AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       189 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                       ..  +++.+++.|++.|+|.+...+...+.+.+++|+++|++++|+...+.++|. +++|.+++.+.+..||+..+|..
T Consensus       101 ~~~--~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~  178 (402)
T TIGR00897       101 GHA--NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA  178 (402)
T ss_pred             cCc--cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence             24  788889999999999888878888889999999999999999999999996 68999999999888977666655


Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      ....++..++.++..++.+.++... +++          +..+....++.++|+|.++...+..++.....+.+.+++|.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  247 (402)
T TIGR00897       179 LAFVLTGGVIALFSNKDIFTPQHMQ-TRE----------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPM  247 (402)
T ss_pred             HHHHHHHHHHHHhccCCCCCccccc-CCc----------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433344444444432211110 000          00011224567889999998888888888888999999999


Q ss_pred             HHHHhcCCChhhhhhhhhh
Q 017461          347 YYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~  365 (371)
                      |+++ +|+++.+.+.+...
T Consensus       248 ~~~~-~g~s~~~~~~~~~~  265 (402)
T TIGR00897       248 FVAE-LGFSTSEWLQIWGT  265 (402)
T ss_pred             HHHH-cCCChhHHHHHHHH
Confidence            9877 79999988776544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.92  E-value=1.7e-23  Score=193.53  Aligned_cols=244  Identities=11%  Similarity=0.037  Sum_probs=184.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      .+++.++..+.........+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+++.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            34555555555455555566678899999999999999999999999999999999999999999999999999988877


Q ss_pred             hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhH
Q 017461          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (371)
Q Consensus       189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  268 (371)
                      +.  +.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.++|.+.+. .|+..+.+.+.
T Consensus        88 ~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         88 GI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             HH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            77  54   78899999999999999999999999999999999999999999999999999999885 47777776655


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017461          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  348 (371)
                      +.++. ++..+..|+.+.+++..+.+..... .+       ....++.++++|.+.......++.........+.++.|+
T Consensus       162 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (393)
T PRK11195        162 IYLLA-ALFNLFIPRLGARRPGQSWNPIALL-RD-------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWA  232 (393)
T ss_pred             HHHHH-HHHHhcCCCCcccccccCCCHHHHH-HH-------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333 3334455654432211111000000 00       012245678888877665555555555666677778888


Q ss_pred             HHhcCCChhhhhhhhhhee
Q 017461          349 NQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       349 ~~~~g~s~~~~~~~~~~~~  367 (371)
                      ++.+|+++.+.|++....+
T Consensus       233 ~~~lg~s~~~~G~~~~~~~  251 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVA  251 (393)
T ss_pred             HHHcCCChhHHHHHHHHHH
Confidence            8889999999998877544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=2.3e-24  Score=204.43  Aligned_cols=185  Identities=24%  Similarity=0.259  Sum_probs=156.1

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC--------cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWN--------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV  171 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  171 (371)
                      ++.+...+++.++.++..++...+....+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            34455555566666777788888888899888888777        7899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhc-cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhH
Q 017461          172 LGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS  250 (371)
Q Consensus       172 ~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  250 (371)
                      ++++.++++++.+++.+... .+++.++++|+++|+|.+...+...++++|++|+++|++++++...+..+|.++++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999998866541 14568999999999999999999999999999999999999999999999999999999


Q ss_pred             ---HHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCC
Q 017461          251 ---PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (371)
Q Consensus       251 ---~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                         +.+.+..|||+.|++.++..++. ++..++.+|++
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESP  220 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence               66667789999999966555444 34445556654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.92  E-value=1.1e-23  Score=201.23  Aligned_cols=168  Identities=18%  Similarity=0.319  Sum_probs=157.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +++|..+..++++.++..++....++..|.+.+++|++..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +++.+++++++  +++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.+||
T Consensus        96 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhHH
Q 017461          260 PSVFYSFGSL  269 (371)
Q Consensus       260 ~~~f~~~~~~  269 (371)
                      |+.|++.++.
T Consensus       174 ~~~f~~~~~~  183 (496)
T PRK03893        174 RALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHH
Confidence            9999875443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.92  E-value=3.1e-23  Score=191.42  Aligned_cols=237  Identities=16%  Similarity=0.148  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  185 (371)
                      +..++++.++.........+.+|.+.+++|.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555677777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHH
Q 017461          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      +++++  +++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+...|...+ .
T Consensus        88 ~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~  164 (381)
T PRK03633         88 LGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW-V  164 (381)
T ss_pred             HHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-H
Confidence            99999  99999999999999999988888888889999999999999999999999999999999987754443333 3


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      .+.+......+.+...++  ...++                +  +..+++++++++.++......++....+.....++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~--~~~~~----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  224 (381)
T PRK03633        165 TGLVLAAILPLLFTRILN--QQAEN----------------H--DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMP  224 (381)
T ss_pred             HHHHHHHHHHHHHhcccC--CCCCC----------------C--CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            232222222222211111  11000                0  012345577888887665555555556666778899


Q ss_pred             HHHHHhcCCChhhhhhhhhhe
Q 017461          346 TYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       346 ~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      .|+++ .|.++.+++.+.+..
T Consensus       225 ~~~~~-~g~s~~~~g~~~~~~  244 (381)
T PRK03633        225 LYLNH-QGMSDASIGFWMALL  244 (381)
T ss_pred             HHHHH-cCCCHHHHHHHHHHH
Confidence            99987 699999888766543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=4e-23  Score=190.16  Aligned_cols=235  Identities=15%  Similarity=0.083  Sum_probs=185.4

Q ss_pred             HHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHH-HHHHHHHHHHHhhhh
Q 017461          112 AFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF-GVVWWSIATALTPVA  189 (371)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~  189 (371)
                      .++...+......+.+|. +.+++|.+..+.|++.+++.++..+.+++.|+++||+|||+.+++ +.++.+++.++++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            455666666777787776 578999999999999999999999999999999999999887654 566667777888888


Q ss_pred             hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHH--HHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHh
Q 017461          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS--LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (371)
Q Consensus       190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  267 (371)
                      +  +++.+++.|++.|.+.+...+...+++.|+.++++|+..  .++...+.++|.++||.+++.+.+..|||+.|++.+
T Consensus        85 ~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        85 R--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             c--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            8  999999999999988888888888899999887777654  578888889999999999999999899999999998


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      ++.++..++.+++.||.+.+.++...                 ..+.++.++++.++...+..++..........++|.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGALT-----------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLL  225 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCcccccC-----------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            88777777766666765432211100                 1123346777877766666666666566667788999


Q ss_pred             HHHhcCCChhhhhhhhhh
Q 017461          348 YNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       348 l~~~~g~s~~~~~~~~~~  365 (371)
                      +++.+|.++.+++.+...
T Consensus       226 ~~~~~g~~~~~~g~~~~~  243 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGT  243 (375)
T ss_pred             HHHHcCCCHHHHHHHHHH
Confidence            988889999988877544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.92  E-value=3e-23  Score=192.45  Aligned_cols=232  Identities=14%  Similarity=0.121  Sum_probs=183.6

Q ss_pred             HHHHHhhhhhhhhhhh-hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhc
Q 017461          113 FLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  191 (371)
                      .++.........++++ .+++++|++..++|++.+.+.++..+.+++.|+++||+|||+++.++.++.+++.+++.+.+ 
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-   97 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-
Confidence            3333334444444444 47889999999999999999999999999999999999999999999999999999999998 


Q ss_pred             cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHH
Q 017461          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT  271 (371)
Q Consensus       192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~  271 (371)
                       ++|.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. ..||++.|++.+++.+
T Consensus        98 -~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~  175 (400)
T PRK11646         98 -EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV  175 (400)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence             99999999999999998888999999999999999999999999999999999999999998 6899999999888777


Q ss_pred             HHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 017461          272 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV  351 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (371)
                      +..++..+..|+.+..+ .  ..              ....+++++++++.++...+..+...........++|.|+++.
T Consensus       176 ~~~i~~~~~~~~~~~~~-~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  238 (400)
T PRK11646        176 LAAAFNAWLLPAYKLST-V--RT--------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI  238 (400)
T ss_pred             HHHHHHHHhCCcccccc-c--ch--------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence            66655555444421110 0  00              0122466788888888666655555544445567889999885


Q ss_pred             cCCChhhhhhhhhh
Q 017461          352 SSFGSKTLSETVQV  365 (371)
Q Consensus       352 ~g~s~~~~~~~~~~  365 (371)
                       +.++.+.+++.+.
T Consensus       239 -~~~~~~~g~l~~~  251 (400)
T PRK11646        239 -AGSPSAVKWMYAI  251 (400)
T ss_pred             -cCCchHHHHHHHH
Confidence             4467777766544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=4.2e-23  Score=197.13  Aligned_cols=256  Identities=15%  Similarity=0.139  Sum_probs=190.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc-----CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhH
Q 017461           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-----NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL  172 (371)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~  172 (371)
                      -.+.++.++.++.++.+..+++...++...|.+.+++     +.+..+.+++.+.+.++..++++++|+++||+|||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~   89 (502)
T TIGR00887        10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY   89 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            3556777888899999999999999999888877653     34566789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccC------hhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHH
Q 017461          173 GFGVVWWSIATALTPVAAKLG------LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG  246 (371)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  246 (371)
                      .++.+++.++.+++++++  +      ++.++++|++.|++.|...+....+++|++|+++|++++++......+|.+++
T Consensus        90 ~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        90 GMELIIMIIATVASGLSP--GSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHcc--CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988886  5      78899999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhc-----------------------ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCC--CCCChH-HHHHHh
Q 017461          247 LAFSPFLIH-----------------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--PQLRPA-EKKLIV  300 (371)
Q Consensus       247 ~~~~~~l~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~  300 (371)
                      +.++..+..                       ..+||++|.+.++.+++. ++..++.||+|+..  +.+.++ ..+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~  246 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMS  246 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHH
Confidence            988876532                       247999998776665544 44456779988742  111111 111000


Q ss_pred             ---h-----hccC------CCCcccchhhhhhcC---hhH----HHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChh
Q 017461          301 ---S-----SCAS------KEPVKTIPWGLILSK---PPV----WALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSK  357 (371)
Q Consensus       301 ---~-----~~~~------~~~~~~~~~~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~  357 (371)
                         +     +.++      +++....++++++++   ++.    +...+.+++..+.+++...|.|.++++ .|++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~  323 (502)
T TIGR00887       247 AVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPP  323 (502)
T ss_pred             HHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCC
Confidence               0     0000      000011357777653   222    112233444455667777888999976 588654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.92  E-value=7.8e-23  Score=189.80  Aligned_cols=230  Identities=17%  Similarity=0.193  Sum_probs=186.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  185 (371)
                      +..+++.+++.++.....+++.|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44566667777778888889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhh-ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------
Q 017461          186 TPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------  256 (371)
Q Consensus       186 ~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  256 (371)
                      +..+. ..+++.+++.|++.|+|.|...+..++++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            65432 117999999999999999999999999999999999999999999999999999999999877422        


Q ss_pred             ------------------cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhh
Q 017461          257 ------------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL  318 (371)
Q Consensus       257 ------------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  318 (371)
                                        .+||++|++.+++.++..++..+. +.++.++.+  + +          + .......++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~p~~~~~~--~-~----------~-~~~~~~~~~~~  229 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KMPALNHSD--A-K----------Q-ISFSASLSRLA  229 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc--c-c----------c-ccchhhHHHHH
Confidence                              369999999888777665544322 211111100  0 0          0 00112345688


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017461          319 SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ  350 (371)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (371)
                      |+|.++...+..+++........++++.|.++
T Consensus       230 ~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~  261 (410)
T TIGR00885       230 RIRHYREGVIAQFFYVGVQIMCWTFIIQYAVR  261 (410)
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988888888888888888999999976

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=8.9e-23  Score=188.94  Aligned_cols=238  Identities=12%  Similarity=0.133  Sum_probs=186.7

Q ss_pred             HHHHHHHhhhhhhhhhhh-hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh
Q 017461          111 SAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  189 (371)
                      +..++.........+.++ .+.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.++..++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            344445555556666555 4678899999999999999999999999999999999999999999999999999999999


Q ss_pred             hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHH
Q 017461          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (371)
Q Consensus       190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  269 (371)
                      +  +++.++++|++.|.+.+...+...++..|.+++++|++++++.....++|.++||++++.+.+ .||+.+|++.+++
T Consensus        94 ~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054         94 N--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence            9  899999999999988888888899999999999999999999999999999999999999885 7999999988887


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017461          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (371)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (371)
                      .++..++..++.++.+.++++..  ++              ....++++|+|.++...+..++..+....+..+.+.|+.
T Consensus       171 ~~i~~i~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  234 (395)
T PRK10054        171 SAFPLVFIQIWVQRSEKAIATET--GS--------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVM  234 (395)
T ss_pred             HHHHHHHHHHHHhccccccccch--hh--------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            77765555554544332211100  00              112256788999988888877777777666667777775


Q ss_pred             Hh--cCCChhhhhhhhhhee
Q 017461          350 QV--SSFGSKTLSETVQVCT  367 (371)
Q Consensus       350 ~~--~g~s~~~~~~~~~~~~  367 (371)
                      ..  .+.+....+.++...+
T Consensus       235 ~~~~~~~~~~~~g~~~~~~~  254 (395)
T PRK10054        235 VVADSDFAEKVVAVVLPVNA  254 (395)
T ss_pred             HhcccchHHHHHHHHHHhhh
Confidence            43  3556666666655543

>TIGR00896 CynX cyanate transporter

Probab=99.91  E-value=5.8e-23  Score=187.78  Aligned_cols=225  Identities=11%  Similarity=0.133  Sum_probs=181.2

Q ss_pred             hhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHH
Q 017461          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV  199 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~  199 (371)
                      ....++.+|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+.+ ..+  +.+.+++
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~~   92 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLFA   92 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHHH
Confidence            3556789999999999999999999999999999999999999999999999999999988888877 677  8999999


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc--CchhHHHHHhHHHHHHHHHH
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~~  277 (371)
                      .|++.|++.+...+....++.|+++ ++|+++++++..+.++|..+++.+++.+.+..  +||+.|.+.+++.++..+. 
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~-  170 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA-  170 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-
Confidence            9999999999888888889999995 68999999999999999999999999887764  3999988776654433222 


Q ss_pred             hhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChh
Q 017461          278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSK  357 (371)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~  357 (371)
                        +.++.+.++++.               ++......++++|+|.++...+..++....++....++|.|+++ +|++..
T Consensus       171 --~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~  232 (355)
T TIGR00896       171 --WIPQVRRRVAAN---------------QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAA  232 (355)
T ss_pred             --HhhhhccccCCC---------------CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH
Confidence              223221111100               00001234567889999888777777778888889999999987 699999


Q ss_pred             hhhhhhhhee
Q 017461          358 TLSETVQVCT  367 (371)
Q Consensus       358 ~~~~~~~~~~  367 (371)
                      +++.+.+..+
T Consensus       233 ~~g~~~~~~~  242 (355)
T TIGR00896       233 TAGSLLALMQ  242 (355)
T ss_pred             HHHHHHHHHH
Confidence            9888876644

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=6.6e-23  Score=192.66  Aligned_cols=267  Identities=18%  Similarity=0.241  Sum_probs=222.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHH
Q 017461           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (371)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  177 (371)
                      ...+.|.+++..++..+........++.+.+.+.++++-+..+++|+.++......+..|+.+.+.||||.|.+.++|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            56678889888888888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccChhHHHHH-HHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 017461          178 WWSIATALTPVAAKLGLPFLLVV-RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       178 ~~~i~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (371)
                      +.++|.++.++++  ++|++++. .++.|+|.|..+.....++..+| +++|+.+.|+...+.++|.++-|.+..++.+.
T Consensus       120 v~~~g~~lssF~~--~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  120 VAALGLLLSSFAT--SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             HHHHHHHHHHHHh--hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence            9999999999999  99888887 78999999999999999999998 78999999999999999999999999999999


Q ss_pred             cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCC-----------------------------CCh----HHHHHHhhhc
Q 017461          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-----------------------------LRP----AEKKLIVSSC  303 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~----~~~~~~~~~~  303 (371)
                      +|||+.+++.+.+.+-.++......|..+...+.                             ...    .+......+.
T Consensus       197 ~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (509)
T KOG2504|consen  197 YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD  276 (509)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence            9999999999999887777777766633222111                             000    0000000000


Q ss_pred             cCC-CCcccchh---hhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          304 ASK-EPVKTIPW---GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       304 ~~~-~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      +.. ........   .++++++.|+.+.+...+..++++....++|.|..+ +|++..+++.+++++++
T Consensus       277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi  344 (509)
T KOG2504|consen  277 KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGV  344 (509)
T ss_pred             cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHH
Confidence            000 01111111   468999999999999999999999999999999996 79999999999988765

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.91  E-value=1.8e-22  Score=187.45  Aligned_cols=170  Identities=20%  Similarity=0.192  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHH
Q 017461          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (371)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  182 (371)
                      +.+..+.+..++..++..+..+.+|. +.+++|.+..+.|++.+++.+++.+++++.|+++||+|||+++.++.++++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34445666667777777778888887 67899999999999999999999999999999999999999999999998887


Q ss_pred             HHHhhhhhc------cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 017461          183 TALTPVAAK------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       183 ~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (371)
                      .+++.++..      .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            766554320      14667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHhHHHHHH
Q 017461          257 FGWPSVFYSFGSLGTVW  273 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~~~  273 (371)
                      .||++.+++.+++.++.
T Consensus       175 ~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        175 GGLAGLGLLIMLLALLG  191 (399)
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            99999988766655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.91  E-value=1.2e-22  Score=189.89  Aligned_cols=238  Identities=13%  Similarity=0.067  Sum_probs=184.6

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh----
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV----  188 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----  188 (371)
                      .++..+......+..|.+.++++.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.+.    
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            3444455566778888988999989999999999999999999999999999999999999988888877765542    


Q ss_pred             -hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHh
Q 017461          189 -AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (371)
Q Consensus       189 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  267 (371)
                       .+  +++.+++.|++.|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+.+..||++.|++.+
T Consensus       106 ~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        106 PEP--SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             CCC--cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence             34  788999999999999888888889999999999999999999999999999999999999999889999999877


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      +..++..++.+ ..|+.+.++.+.....            +.....++.++++|.++...+..++... ...+..++|.|
T Consensus       184 ~~~~~~~~~~~-~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~  249 (417)
T PRK10489        184 AGTFITLLPLL-RLPALPPPPQPREHPL------------RSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPAL  249 (417)
T ss_pred             HHHHHHHHHHH-hCCCCCCCCcccccch------------HHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHH
Confidence            77666555443 3444332211100000            0012245567788887766555554333 45677889999


Q ss_pred             HHHhcCCChhhhhhhhhhe
Q 017461          348 YNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       348 l~~~~g~s~~~~~~~~~~~  366 (371)
                      +++.+|+++.+.+++.+..
T Consensus       250 ~~~~~g~~~~~~g~~~~~~  268 (417)
T PRK10489        250 ADEVWQMGAAQIGLLYAAV  268 (417)
T ss_pred             HHhccCCChhHhHHHHHHH
Confidence            9988899999988876654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=3.7e-22  Score=187.97  Aligned_cols=244  Identities=15%  Similarity=0.145  Sum_probs=183.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      +++......+.....+..++.+..++| +.....|+.+.+.++.++..++.|+++|.||||++++++.++..+|.++++.
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            333333344444555677888999999 5688999999999999999999999999999999999999999999999999


Q ss_pred             hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhH
Q 017461          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (371)
Q Consensus       189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  268 (371)
                      ++  |...++.+..+.|+|.|... .....++|..|.|.|+...++......+...+++.++..+..+.+|||.|++.++
T Consensus       128 A~--~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  128 AQ--NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             CC--cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            99  99999999999999977665 4566689999999999888887777666667888888877777799999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCC--CCC-ChHHH--HHH--------------------------------------------
Q 017461          269 LGTVWFTVWLSKAHSSPAED--PQL-RPAEK--KLI--------------------------------------------  299 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~--~~~--------------------------------------------  299 (371)
                      +..+.+++.+++..++++.+  .++ ..++.  +.+                                            
T Consensus       205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L  284 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL  284 (599)
T ss_pred             HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH
Confidence            87777666555554433322  111 11111  100                                            


Q ss_pred             ----hhhccCCCCcccchhhhhhcC-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChh
Q 017461          300 ----VSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSK  357 (371)
Q Consensus       300 ----~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~  357 (371)
                          ..|...+.+++..|.+ ++|+ +.+...+++.++....++....+.|......++-++.
T Consensus       285 v~F~~wE~~~~~~~Pl~P~~-Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~  346 (599)
T PF06609_consen  285 VAFVVWEWFGAPKDPLFPHR-LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPI  346 (599)
T ss_pred             HHHHHhhhhccCCCCcCCHH-HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence                1111111223345555 7777 5576777788888888888888999988887777654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK12382 putative transporter; Provisional

Probab=99.90  E-value=8.5e-22  Score=182.56  Aligned_cols=164  Identities=18%  Similarity=0.163  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      +..+.++.++......+..+.+|. +.+++|++..++|++.+++.++..++++++|+++||+|||+++.++.++..++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333444555556666677777876 6789999999999999999999999999999999999999999999888777654


Q ss_pred             Hhhh--------hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 017461          185 LTPV--------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       185 ~~~~--------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (371)
                      .+..        ..  +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||++++.+.+.
T Consensus        97 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382         97 AYLLAAILPVSAPF--KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHhhhccccchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3322        24  7889999999999999988888999999999999999999999999999999999999999998


Q ss_pred             cCchhHHHHHhHHHH
Q 017461          257 FGWPSVFYSFGSLGT  271 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~  271 (371)
                      +||++.+++..++.+
T Consensus       175 ~g~~~~~~~~~~~~~  189 (392)
T PRK12382        175 FGFAALALTTMVLPL  189 (392)
T ss_pred             cChHHHHHHHHHHHH
Confidence            999988776554433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=9.7e-22  Score=178.81  Aligned_cols=219  Identities=28%  Similarity=0.511  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      .+.+..+...+......+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34455667777788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHh
Q 017461          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (371)
Q Consensus       188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  267 (371)
                      +.+  +++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+||+.|++.+
T Consensus        83 ~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             Hhc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            998  999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      ++.++..++..+..                                       |.++...+..++..........+.|.+
T Consensus       161 ~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (352)
T cd06174         161 ILGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLY  201 (352)
T ss_pred             HHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            88777666654432                                       556778888888888899999999999


Q ss_pred             HHHhcCCChhhhhhhhhhee
Q 017461          348 YNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       348 l~~~~g~s~~~~~~~~~~~~  367 (371)
                      +.+.+|.+..+.+.+....+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~  221 (352)
T cd06174         202 LQEVLGLSAAEAGLLLSLFG  221 (352)
T ss_pred             HHHhcCCCHHHHHHHHHHHH
Confidence            99877999998887765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=1.3e-21  Score=180.65  Aligned_cols=236  Identities=9%  Similarity=0.021  Sum_probs=180.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhH----HHHHHHHHHHHH
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL----GFGVVWWSIATA  184 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~  184 (371)
                      +.+.++...+......+++|.+.+++|.+..++|++.+++.++..++++++|+++||+||+...    .++..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            3445556666667788899999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      .+..++  +++.+++.|+++|.+.+...+...+++.++  .++|+++.|......++|.+++|++++.+.+.+|||..|+
T Consensus        87 ~~~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        87 FSAGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             HHHhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            344567  899999999999999888888888887665  4788999999999999999999999999999999999998


Q ss_pred             HHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 017461          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (371)
                      +.+++..+. ++.+...++.++++++ ++            ++......+++++|+|+++...+..++.......+..+.
T Consensus       163 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~  228 (382)
T TIGR00902       163 ILTAGLAFM-LIGFLIKPTIPPKDAI-PE------------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS  228 (382)
T ss_pred             HHHHHHHHH-HHHHHcCCCCCCCccc-cc------------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            876553332 2333333321111110 00            000112346778999999999999998888999999999


Q ss_pred             HHHHHHhcCCChhhhhhhhhh
Q 017461          345 PTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       345 ~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      |.|+++ .|.++.++|.+..+
T Consensus       229 ~~~l~~-~g~s~~~~g~l~~~  248 (382)
T TIGR00902       229 AIYWQA-AGISASATGLLWGI  248 (382)
T ss_pred             HHHHHH-CCCCHhHHHHHHHH
Confidence            999988 79999999987664

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.89  E-value=5.6e-21  Score=178.00  Aligned_cols=226  Identities=17%  Similarity=0.155  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcch-----HHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT-----VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  182 (371)
                      .++++.++..+......+.+|.+.+++|++..+     .|++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            344555666677777888999999999988654     488999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhH
Q 017461          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (371)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  262 (371)
                      .+++.+.+  +++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.+++|.+++.+.+..|||+.
T Consensus        98 ~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  174 (408)
T PRK09874         98 MVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV  174 (408)
T ss_pred             HHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            99998888  99999999999999865 4677788899999999999999999999999999999999999998999999


Q ss_pred             HHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHH-HHHHHHHHHHHHHHH
Q 017461          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWAL-IVSHFCHNWGTFILL  341 (371)
Q Consensus       263 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  341 (371)
                      |++.+++.++..++.+++.++++...++....+               ..+..+.+++++++.. .+..++.........
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIRENFQPVSKKEMLH---------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIA  239 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccccchhhhH---------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHH
Confidence            999988877777666666665432211110000               0112234566666543 333334444455566


Q ss_pred             HhhHHHHHHh
Q 017461          342 TWMPTYYNQV  351 (371)
Q Consensus       342 ~~~~~~l~~~  351 (371)
                      .+++.|+.+.
T Consensus       240 ~~~~~~~~~~  249 (408)
T PRK09874        240 PILTLYVREL  249 (408)
T ss_pred             HHHHHHHHHH
Confidence            7778888774

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=2.5e-22  Score=192.31  Aligned_cols=156  Identities=22%  Similarity=0.272  Sum_probs=143.2

Q ss_pred             hhhhhhhhhcCCC---cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHH
Q 017461          125 IAILPMSAEFNWN---PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       125 ~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  201 (371)
                      +..+.+.+|+|++   ..+.+++.+++.++.++++++.|+++||+|||++++++.++.+++.+++++++  +++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            5678899999998   89999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcc
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  281 (371)
                      ++.|++.+...+....++.|++|+++|+.+.++...+..+|.++++.+++.+.+   ||+.|++.+++.++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999998877654   9999999988877766655 566


Q ss_pred             cCCCC
Q 017461          282 HSSPA  286 (371)
Q Consensus       282 ~~~~~  286 (371)
                      ||+++
T Consensus       264 ~esp~  268 (505)
T TIGR00898       264 PESPR  268 (505)
T ss_pred             CCChH
Confidence            77664

>TIGR00901 2A0125 AmpG-related permease

Probab=99.89  E-value=1.5e-21  Score=178.48  Aligned_cols=232  Identities=13%  Similarity=0.054  Sum_probs=179.6

Q ss_pred             hhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-----CCchh-HHHHHHHHHHHHHHhhhhhc-cC
Q 017461          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWWSIATALTPVAAK-LG  193 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~~~-~~  193 (371)
                      ...++..|.+.+++|++.+++|++.+. .+...+ .+++|+++||+     ||||. ++.+.++.+++.++.++.+. .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999766 455554 99999999998     89987 46677777777767777631 15


Q ss_pred             hhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC--------chhHHHH
Q 017461          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WPSVFYS  265 (371)
Q Consensus       194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------w~~~f~~  265 (371)
                      .+.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..|        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            67777888888988888899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChh---HHHHHHHHHHHHHHHHHHHH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP---VWALIVSHFCHNWGTFILLT  342 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~  342 (371)
                      .+++.++..+..++..+|+...++.. +++..           .....++++++++.   ++.+.+..++....++....
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASVP-KPLTQ-----------AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV  230 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccc-hhHHH-----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88877776555554455543221111 11000           01235566777775   77777777777888888899


Q ss_pred             hhHHHHHHhcCCChhhhhhhhhhee
Q 017461          343 WMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       343 ~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ++|.|+++ +|+++.+.+.+....+
T Consensus       231 ~~~~~l~~-~g~~~~~~g~~~~~~~  254 (356)
T TIGR00901       231 LTTLFLLD-MGFSKEEIALVAKING  254 (356)
T ss_pred             HHHHHHHH-cCCCHHHHHHHhHHHH
Confidence            99999998 8999999987776543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.89  E-value=5.7e-21  Score=181.41  Aligned_cols=242  Identities=14%  Similarity=0.145  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-----CCchh-HHHHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWWSI  181 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i  181 (371)
                      .+++..+..++.....+..+|.+.++.|.+..+++.+ +.....+ ++.+++|+++||+     |||+. ++++.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            3444455566666678888999999999999999997 3333443 6899999999999     99986 6677777777


Q ss_pred             HHHHhhhhh-ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-ccCc
Q 017461          182 ATALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGW  259 (371)
Q Consensus       182 ~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw  259 (371)
                      +.+++++.+ ..+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            777777753 12688899999999999999999999999999999999999999999999999999999999998 5799


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHH
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                      |.+|++.+++.++..+..++ .||++...+.....            ++....+++++++++..|...+..++.......
T Consensus       174 r~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~  240 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTL------------EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAF  240 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCccccccccch------------hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence            99999998887766555443 55543221100000            000123567788888887776666666666667


Q ss_pred             HHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          340 LLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       340 ~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                      ...+.+.|+.+.+|++..+++++..
T Consensus       241 ~~~~~~~~l~~~~G~s~~~~g~~~~  265 (491)
T PRK11010        241 AMSLTTTFLIRGVGFDAGEVGLVNK  265 (491)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            7778888887778999999998864

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.88  E-value=1.7e-21  Score=180.21  Aligned_cols=237  Identities=18%  Similarity=0.195  Sum_probs=178.0

Q ss_pred             HHHHhhhhhhhhhhhhhhhhcC--CCcchHHHHHHH-----HHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          114 LLCNMDRVNMSIAILPMSAEFN--WNPATVGLIQSS-----FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      +.++++.+.++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888777754  455666665543     223344688999999999999999999999999999999


Q ss_pred             hhhhccChh--------HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh----
Q 017461          187 PVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI----  254 (371)
Q Consensus       187 ~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----  254 (371)
                      ++++  +++        .++++|+++|++.+...+....++.|++++++|+++.++...+..+|.++++.++..+.    
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhCC--ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9998  764        48889999999999999999999999999999999999999999999999998887654    


Q ss_pred             ----cccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChh--HHHHHH
Q 017461          255 ----HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP--VWALIV  328 (371)
Q Consensus       255 ----~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~  328 (371)
                          +..|||+.|++.+++.++..++ ....+|++...+     ++     +   +++....++++.+++++  ++...+
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEK-----AQ-----E---KHKKKRGPIRETLTKHRKPFLLGLG  226 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHH-----HH-----h---ccccccCCHHHHHHhchHHHHHHHH
Confidence                3578999999877665544333 223333322110     00     0   01111334566676665  777777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          329 SHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ..++.....+....++|.|+++.+|++..+.+.+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  264 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLS  264 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence            77777788888889999999887899998888765543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.8e-23  Score=178.29  Aligned_cols=212  Identities=17%  Similarity=0.137  Sum_probs=179.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhH
Q 017461          136 WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAM  215 (371)
Q Consensus       136 ~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  215 (371)
                      -++.++|++...+.+...+.+++.|.+.||+|+|-.+++|.+++...++++++.+  +++.++++|.+||+|.++..+..
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHHHHhhh
Confidence            3567899999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHhcccCCcc-hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChH
Q 017461          216 NNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA  294 (371)
Q Consensus       216 ~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (371)
                      .+++++.||.++ |++++|+...+.++|..+||++||++.+..|.+.+|++.++++++..++.++..+.....++..   
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~---  257 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST---  257 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc---
Confidence            999999999664 7999999999999999999999999999999999999999999998888777766543332111   


Q ss_pred             HHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                                    ....++++++++|.++.........+.......-.++.+..+...-+.-+.|+.+...
T Consensus       258 --------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~  315 (464)
T KOG3764|consen  258 --------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPA  315 (464)
T ss_pred             --------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccc
Confidence                          1134677799999998877777777777777777777777776664343666665443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.88  E-value=3.7e-21  Score=177.56  Aligned_cols=232  Identities=12%  Similarity=0.109  Sum_probs=174.3

Q ss_pred             HHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCc----hhHHHHHHHHHHHHHHhhhh
Q 017461          114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK----AVLGFGVVWWSIATALTPVA  189 (371)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~~  189 (371)
                      +........+.+.+|.+.+++|.+..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  ........
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~   91 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA   91 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence            33344556778888999999999999999999999999999999999999999994    3333222222  22233334


Q ss_pred             hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHH
Q 017461          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (371)
Q Consensus       190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  269 (371)
                      +  ++|.+++.|++.|++.+...+...+++.++  .++|+++.+.......+|.++||++++++.+++|||..|++.++.
T Consensus        92 ~--~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~  167 (382)
T PRK11128         92 H--SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG  167 (382)
T ss_pred             c--cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            6  899999999999999888888888887776  456888889999999999999999999999999999999987765


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017461          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (371)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (371)
                      .++..++. ++.|+.+++.++    ++         ..++....+++++|+|.++...+..++..........++|.|++
T Consensus       168 ~~~~~~~~-~~~~~~~~~~~~----~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  233 (382)
T PRK11128        168 VASMLLGQ-LLRPTIMPQGES----RQ---------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ  233 (382)
T ss_pred             HHHHHHHH-HccCCCCCcccc----cc---------ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            44443333 333332111100    00         00011346788999999998888888877777778888899997


Q ss_pred             HhcCCChhhhhhhhhhe
Q 017461          350 QVSSFGSKTLSETVQVC  366 (371)
Q Consensus       350 ~~~g~s~~~~~~~~~~~  366 (371)
                      + .|++..+.|.+.+..
T Consensus       234 ~-~g~s~~~~g~~~~~~  249 (382)
T PRK11128        234 A-AGYSASTIGYLWSLG  249 (382)
T ss_pred             H-CCCCHhHHHHHHHHH
Confidence            7 799998888876643

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=1.5e-20  Score=165.09  Aligned_cols=247  Identities=18%  Similarity=0.207  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      .+..+...+++.++......+++|.+++.|+++..+.+++...+..++.+++++.|++.+|+|+|+.+++|+.++++++.
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            44555666677777788888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhhh-ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc-------
Q 017461          185 LTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------  256 (371)
Q Consensus       185 ~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------  256 (371)
                      ++.-+. ..++..++++-++.|.|.+...+.++++++...++++....+++.+..+++|.+++|++++.+..+       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            885322 127889999999999999999999999999999998889999999999999999999999988762       


Q ss_pred             ------------cCchhHHHHHhHHHHHHHHHHhhcc-cCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhH
Q 017461          257 ------------FGWPSVFYSFGSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPV  323 (371)
Q Consensus       257 ------------~gw~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  323 (371)
                                  ..|+++|.+.+.+.+++.+...... |+.+....+..+.               +.....+++++|.+
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~---------------~~~~~~~l~~~~~~  238 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS---------------GSAGLSSLFQNKHL  238 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc---------------ccchHHHHHhChHH
Confidence                        2488888888877766666554432 2222211111110               01145678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          324 WALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      +...++.|++......+..|++.|+.+..|++..+++..++..
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~  281 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFF  281 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999997799999988877653

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=2.5e-20  Score=172.67  Aligned_cols=231  Identities=18%  Similarity=0.116  Sum_probs=162.3

Q ss_pred             HHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHH-HHHHHHHHHHHhhhhhCCchhH-HHHHHHHHHHHHHhhhh
Q 017461          113 FLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVL-GFGVVWWSIATALTPVA  189 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~  189 (371)
                      .++..+......+.++. +.+++|++.+++|++.+...+ +..++.+++|+ .||+|||+.+ ..+.++.+++.++.+++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555666655 678999999999999876655 55555555555 9999999875 45566666778888888


Q ss_pred             hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcch--HHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHh
Q 017461          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (371)
Q Consensus       190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  267 (371)
                      +  +++.+++.+.+.|...+...+...+++.++.+++.|  +...++...+.++|.++||++++.+.+++|||..|++.+
T Consensus       103 ~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        103 R--NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             h--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence            8  888877665555544456778888888888766555  345678889999999999999999999899999999998


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcC-hhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      ++.++..++.+++.||.+.+++... .+          .+     .   ..++ +..+......++....+..+..++|.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  241 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKELPLAT-GT----------LE-----A---PRRNRRDTLLLFVICTLMWGTNSLYIINMPL  241 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCCCcccc-cc----------cc-----c---cccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777777776776543322110 00          00     0   0112 22333333444445556667778999


Q ss_pred             HHHHhcCCChhhhhhhhhh
Q 017461          347 YYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~  365 (371)
                      |+++.+|+++.+++.+...
T Consensus       242 ~l~~~~~~~~~~~g~~~~~  260 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGT  260 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHH
Confidence            9988889999998887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.87  E-value=2.7e-20  Score=169.09  Aligned_cols=238  Identities=15%  Similarity=0.134  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcch-HHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT-VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      +|.++++..  .+...+...|.+.+++|++.++ .|.+.+++..++++++++.|+++||+|.|+++.++.+.+.+..++.
T Consensus        32 lC~fGF~~e--~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~  109 (511)
T TIGR00806        32 LCFYGFMAQ--FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLL  109 (511)
T ss_pred             HHHHHHHHH--hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            444443332  4677888899999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      ++++  +++.+.+.|++.|++.|..+ +...++..|+|+++|+++.|+...+..+|.++++++++.+ ..+|||+.+.+.
T Consensus       110 ~fa~--Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln  185 (511)
T TIGR00806       110 LLGT--SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN  185 (511)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence            9999  99999999999999999998 9999999999999999999999999999999999999994 468999765543


Q ss_pred             hH--HHHHHHHHHhhcccCCCCC---CCCCChH-----HHHHHhhhcc-CCC--C---------cccchhhhhhcChhHH
Q 017461          267 GS--LGTVWFTVWLSKAHSSPAE---DPQLRPA-----EKKLIVSSCA-SKE--P---------VKTIPWGLILSKPPVW  324 (371)
Q Consensus       267 ~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~-~~~--~---------~~~~~~~~l~~~~~~~  324 (371)
                      -+  .+..+.+++.+++|..++.   ++.....     +.+....+.. ...  .         ....+++...+++.++
T Consensus       186 ~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl  265 (511)
T TIGR00806       186 IISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLL  265 (511)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchh
Confidence            22  2222233333444533321   0100000     0000000000 000  0         0122344556788888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 017461          325 ALIVSHFCHNWGTFILLTWMPTYYNQV  351 (371)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (371)
                      .-.+-+.+..++++.+.+|.-....+.
T Consensus       266 ~WSlWwa~a~~g~~qv~~Y~Q~LW~~v  292 (511)
T TIGR00806       266 LWSLWWVFNSAGYYLITYYVHTLWGTL  292 (511)
T ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            778888888888888887776666553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.87  E-value=3.3e-20  Score=172.42  Aligned_cols=242  Identities=13%  Similarity=0.062  Sum_probs=185.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-----CCch-hHHHHHHHHHHH
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKA-VLGFGVVWWSIA  182 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~  182 (371)
                      .+..++..+.........+|.+.++.|++.+++|++..+...  .+..+++|+++||+     |||| .+.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            344566677777778888999999999999999999777665  69999999999999     8875 688888888888


Q ss_pred             HHHhhhhhc-cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc-cCch
Q 017461          183 TALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWP  260 (371)
Q Consensus       183 ~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~  260 (371)
                      ..+.++.+. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            877777631 25788888888889888888999999999999999999999999999999999999999999885 5999


Q ss_pred             hHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (371)
                      ..|++.+++.++..+.. ++.+|++..+++.++..+            ....++++++|+|.++..++..++........
T Consensus       162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~  228 (402)
T PRK11902        162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGE------------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA  228 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHH------------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence            99999888776655443 445554332211110000            01235677899999988777766666554444


Q ss_pred             HHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          341 LTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       341 ~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      ..+.+.++.+.+|+++.+.++++..
T Consensus       229 ~~~~~~~l~~~~G~~~~~~g~~~~~  253 (402)
T PRK11902        229 GSLSTTFLIRGAGFSAGEVGIVNKT  253 (402)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhH
Confidence            4455556666689999999988754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.87  E-value=1.7e-20  Score=196.02  Aligned_cols=249  Identities=14%  Similarity=0.123  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhh-hhhhhcCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHH---HHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAIL-PMSAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF---GVVWWSIA  182 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i~  182 (371)
                      ..++..+.+++....+..+.. .+..+.+.+ ....++..+++.+.+.++++++|+++||||||+++..   +.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~   98 (1140)
T PRK06814         19 TQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAAL   98 (1140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHH
Confidence            334444444444443333333 344444433 3457888999999999999999999999999997533   22233333


Q ss_pred             HHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhH
Q 017461          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (371)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  262 (371)
                      .+++...+  +++.++++|+++|++.+...++..+++.+++++++|++++|+.+++.++|.++||+++|++.+..||++.
T Consensus        99 ~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~  176 (1140)
T PRK06814         99 AIYGFHLN--SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVIL  176 (1140)
T ss_pred             HHHHHHHh--hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            33333446  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 017461          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (371)
Q Consensus       263 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  342 (371)
                      |+..+++.++.++ +.++.++.+........... ..        ......++.+.+++.++...+..++.++....+.+
T Consensus       177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (1140)
T PRK06814        177 VALLMGIAVLGWL-ASLFIPKTGNAAPDLKIDRN-II--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLS  246 (1140)
T ss_pred             HHHHHHHHHHHHH-HHhhCCCCCCCCCCCeeccc-hH--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            9554444444333 34444444322211110000 00        00123567788999999998888888888888889


Q ss_pred             hhHHHHHHhcCCChhhhhhhhhheee
Q 017461          343 WMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       343 ~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      ++|.|+++.+|.++..+|++++..++
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~  272 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSV  272 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHH
Confidence            99999999899999999988776543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=2.7e-20  Score=194.96  Aligned_cols=238  Identities=15%  Similarity=0.141  Sum_probs=175.9

Q ss_pred             hhhhhhhhhhhhhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh---hhhccChh
Q 017461          121 VNMSIAILPMSAEFNWNPA--TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---VAAKLGLP  195 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~  195 (371)
                      .....+.+.+..+++.+..  ..+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..   .+.  +++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~  104 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--WFW  104 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--cHH
Confidence            3344555566667776543  479999999999999999999999999999999998877666555443   345  799


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------c-CchhHHHHH
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------F-GWPSVFYSF  266 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~-gw~~~f~~~  266 (371)
                      .++++|+++|++.+...++..+++.|++|+++|++++|+...+..+|.++|+++++++.+.        . +|++.+.+.
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV  184 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999875        2 344554444


Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      ++...++.++..+..++.+.........+.       ..........++.+++++.++...+..++..+..+.+..++|.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (1146)
T PRK08633        185 LLAVAVLGLIFAYRLPKVPAAAPEVFDKKK-------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPA  257 (1146)
T ss_pred             HHHHHHHHHHHHhcCcCCCCCCcccccccc-------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            444433344444445555433221110000       0000011235667888899888888777777777888889999


Q ss_pred             HHHHhcCCChh-hhhhhhhhee
Q 017461          347 YYNQVSSFGSK-TLSETVQVCT  367 (371)
Q Consensus       347 ~l~~~~g~s~~-~~~~~~~~~~  367 (371)
                      |+.+.+|++.. .++++.+..+
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~  279 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASA  279 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHH
Confidence            99988999988 8887765544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.86  E-value=6.6e-20  Score=158.79  Aligned_cols=243  Identities=12%  Similarity=0.189  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHH
Q 017461          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (371)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  182 (371)
                      ++.+..+.+..+--=-..+.++++++++.+++|++.+..|++.++..+...+.+++..++..|+|.++.+..++++.++|
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33333333333333334566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc-Cchh
Q 017461          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPS  261 (371)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~  261 (371)
                      .++-....   .+.++.+-.+.|+|.+...+..+.++-+.| +++-+..+|+|....++|.++++.+.-.+.++. |||.
T Consensus        91 ~~iR~~~~---~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSLGG---LPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhccc---HHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            99987763   678999999999999999999999999999 578899999999999999999999999888877 7999


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 017461          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (371)
Q Consensus       262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  341 (371)
                      .....+.++++.++..+.-. ..+...+.                 ..+..+-..++|+|..|.+.+.+.++++.+|...
T Consensus       167 aL~~WAl~allAl~~WlPq~-~r~~~~~~-----------------~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~  228 (395)
T COG2807         167 ALGFWALLALLALLIWLPQA-LREQAASI-----------------ATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVI  228 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhc-cccccccc-----------------ccccccccccccCchhHHHHHHHHhhHHHHHHHH
Confidence            99999888887766655432 11100000                 0011222348999999999999999999999999


Q ss_pred             HhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          342 TWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       342 ~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      .|+|.++.| .|+|+.++|.+++..++
T Consensus       229 ~WLP~ili~-~G~sa~~aG~llsl~~l  254 (395)
T COG2807         229 GWLPAILID-RGLSAAEAGSLLSLMQL  254 (395)
T ss_pred             HHHHHHHHH-cCCCHHHhhhHHHHHHH
Confidence            999999999 69999999988876553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.85  E-value=6.9e-20  Score=173.20  Aligned_cols=167  Identities=12%  Similarity=0.136  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhh-hhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPM-SAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIAT  183 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~  183 (371)
                      .+++..+...+..+.+.+.+|.+ .++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.
T Consensus        14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~   93 (475)
T TIGR00924        14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH   93 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            34445555566666666666665 455  89999999999999999999999999999999 899999999999999999


Q ss_pred             HHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcc---hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCch
Q 017461          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE---RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (371)
Q Consensus       184 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  260 (371)
                      ++.++++  +++.+++++++.|+|.|...+...+++++++|+++   |+.+.++++.+.++|.++||.+++++.+++||+
T Consensus        94 ~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~  171 (475)
T TIGR00924        94 FMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYH  171 (475)
T ss_pred             HHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            9999988  88889999999999999999999999999998754   888999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTV  276 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~  276 (371)
                      +.|++.++..++..+.
T Consensus       172 ~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       172 VGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999877654444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=1.9e-20  Score=179.02  Aligned_cols=251  Identities=19%  Similarity=0.176  Sum_probs=180.6

Q ss_pred             hHHHHHHHHHHHHHHHhh--hhhhhhhhhhhhhhcC---CCc----chHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhH
Q 017461          102 RWFIVVLCFSAFLLCNMD--RVNMSIAILPMSAEFN---WNP----ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL  172 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~  172 (371)
                      .........+..+..+.+  ....+.....+.++..   ...    .+.+|+.+.+.++..++++++|+++|++|||+.+
T Consensus        43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l  122 (513)
T KOG0254|consen   43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL  122 (513)
T ss_pred             hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            344444445555555554  3445555555555321   122    3459999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHH
Q 017461          173 GFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (371)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (371)
                      +++.+++.++.+++++++  |+++++++|++.|+|.|+.....+.+++|..|++.||...++.+....+|..++..++..
T Consensus       123 ~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~  200 (513)
T KOG0254|consen  123 LLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG  200 (513)
T ss_pred             HHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999  999999999999999999999999999999999999999999999999999999655555


Q ss_pred             Hhcc-cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCC-hHHHHHHhhhcc---------------------CCCCc
Q 017461          253 LIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR-PAEKKLIVSSCA---------------------SKEPV  309 (371)
Q Consensus       253 l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~  309 (371)
                      ..+. .+||..+++..+.+++..+. +++.||+|+.--+.. ..+.+.......                     .....
T Consensus       201 ~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  279 (513)
T KOG0254|consen  201 TSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE  279 (513)
T ss_pred             hccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence            5433 48999999988888888888 777888876422211 111110000000                     00001


Q ss_pred             ccchhhhhhc----ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCh
Q 017461          310 KTIPWGLILS----KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGS  356 (371)
Q Consensus       310 ~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~  356 (371)
                      ....+.++++    ++.++...+..+.+..+++...+|.+.+++.. |.+.
T Consensus       280 ~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~  329 (513)
T KOG0254|consen  280 GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKS  329 (513)
T ss_pred             ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCC
Confidence            1112333333    23344566666677777788889999998884 6653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.85  E-value=1.1e-19  Score=168.58  Aligned_cols=247  Identities=10%  Similarity=0.018  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      .+....++.......+.+.+|. +.+++|.+..+.|++.+++.++..+++++.|+++||+|||+.++.+.+..+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3444455555556667777766 466799999999999999999999999999999999999999998776665544322


Q ss_pred             h---hhh---ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCch
Q 017461          187 P---VAA---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (371)
Q Consensus       187 ~---~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  260 (371)
                      .   +.+   ...++.+++.+++.|++.+...+....++.+..  ++++...|......++|.++||++++.+.+ .||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~  162 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ  162 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence            1   111   002344567789999998888888888877754  334567788888889999999999998876 5999


Q ss_pred             hHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (371)
                      ..|++.+++.++..++.+...++++.++..    ++.    .+..+++.+..++++++|+|.++...+..++....+...
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  234 (396)
T TIGR00882       163 IVFWLGSGFALILMLLLMFAKPKAPSSATV----ANA----LGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVF  234 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhhhh----hcc----cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            999999888887766655544443221100    000    000111122346778899999887777766666666667


Q ss_pred             HHhhHHHHHHhc---CCChhhhhhhhhh
Q 017461          341 LTWMPTYYNQVS---SFGSKTLSETVQV  365 (371)
Q Consensus       341 ~~~~~~~l~~~~---g~s~~~~~~~~~~  365 (371)
                      ..+.+.|+.+.+   +.+....|.+.++
T Consensus       235 ~~~~~~y~~~~~~~~~~~~~~~g~~~~~  262 (396)
T TIGR00882       235 DQQFANFFTSFFATPQQGTRVFGYVTTM  262 (396)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHH
Confidence            777888887754   4555556655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.85  E-value=2.1e-19  Score=170.09  Aligned_cols=162  Identities=17%  Similarity=0.257  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhh-hhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSI-AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIA  182 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  182 (371)
                      .+..+++..+...+..+.+.. +..++.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.++++++
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g   94 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG   94 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence            344444455555555555554 4555788899999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhhhhhccChhH-HHHHHHHHHhhhhchhhhHHHHHhcccCCc--chHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          183 TALTPVAAKLGLPF-LLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       183 ~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      .++++++.  +... ++++|+++|+|.|...+...++++|.+|++  +|+.++++++.+.++|.++||.+++++.+++||
T Consensus        95 ~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207         95 YFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             HHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            99999987  5444 558899999999999999999999999877  457789999999999999999999999999999


Q ss_pred             hhHHHHHhH
Q 017461          260 PSVFYSFGS  268 (371)
Q Consensus       260 ~~~f~~~~~  268 (371)
                      |+.|++.++
T Consensus       173 ~~~F~i~~i  181 (489)
T PRK10207        173 SVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHH
Confidence            999998654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.84  E-value=5.9e-20  Score=159.53  Aligned_cols=231  Identities=15%  Similarity=0.048  Sum_probs=154.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhh
Q 017461          135 NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (371)
Q Consensus       135 ~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  214 (371)
                      +.+..-.|++.+.|++...+.++.+|.++||+|||+++.+|++..++..++.+++.  |+..+++.|++.|+.-|- ...
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~kgn-l~v  140 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFKGN-LSV  140 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccCc-hHH
Confidence            33455679999999999999999999999999999999999999999999999999  997777779999999774 588


Q ss_pred             HHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc---ccCchhHHHHHh---HHHHHHHHHHhhcccCCCCCC
Q 017461          215 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFGWPSVFYSFG---SLGTVWFTVWLSKAHSSPAED  288 (371)
Q Consensus       215 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~gw~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      ..++++|.+++|+|+.+++.++..+++|.++||.+||++..   ..|--+-++...   ++.......+.++.||+-..+
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r  220 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR  220 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence            89999999999999999999999999999999999999987   233211111111   111111223334556654333


Q ss_pred             CCCChHH-HHHHhhhccCCCCcccchhhhhhcChhHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhh
Q 017461          289 PQLRPAE-KKLIVSSCASKEPVKTIPWGLILSKPPVW-------ALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLS  360 (371)
Q Consensus       289 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~  360 (371)
                      ++.++.. ..+......+-.+.....--.++||+...       .+.+..+.+...+..+..+...+....+|+++.+.|
T Consensus       221 k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G  300 (451)
T KOG2615|consen  221 KRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG  300 (451)
T ss_pred             hhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe
Confidence            2221100 00000000000000000011133443322       334444555555555555555555667899999999


Q ss_pred             hhhhheee
Q 017461          361 ETVQVCTT  368 (371)
Q Consensus       361 ~~~~~~~~  368 (371)
                      .+++..++
T Consensus       301 ~vl~~tGl  308 (451)
T KOG2615|consen  301 KVLSTTGL  308 (451)
T ss_pred             eeeehhhH
Confidence            88876654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.3e-18  Score=160.24  Aligned_cols=262  Identities=16%  Similarity=0.178  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhh--------hhcC--CCcch----HHHHHHHHHHHHHHHHHHHHHhhhhhCCch
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMS--------AEFN--WNPAT----VGLIQSSFFWGYLLTQIAGGIWADTVGGKA  170 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~  170 (371)
                      ....+.++.+-.++....+++..+.+.        +.+|  +++++    .+.+.+++.+|.++|+++.|+++||+|||.
T Consensus        12 ~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~   91 (485)
T KOG0569|consen   12 AVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKN   91 (485)
T ss_pred             HHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            334444444666666666665544433        3455  34433    467788999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhc-cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHh
Q 017461          171 VLGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF  249 (371)
Q Consensus       171 ~~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  249 (371)
                      .++++.++..++.++..++.. .++..++++|++.|+..|......+.++.|..|.+.||....+.+.+..+|..++..+
T Consensus        92 ~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~  171 (485)
T KOG0569|consen   92 ALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVL  171 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888877665532 1789999999999999999999999999999999999999999999999999999776


Q ss_pred             HH--HHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCC-CC-hHHH-----------------HHHhh--hccCC
Q 017461          250 SP--FLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LR-PAEK-----------------KLIVS--SCASK  306 (371)
Q Consensus       250 ~~--~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-----------------~~~~~--~~~~~  306 (371)
                      +.  .+.+...|++.+.+..+++++.+ +.+.+.||+|+.--. ++ .++.                 +...+  +.++.
T Consensus       172 ~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~  250 (485)
T KOG0569|consen  172 GLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEEL  250 (485)
T ss_pred             ccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcc
Confidence            64  33345569998888777666554 445667888874211 11 1111                 11111  11122


Q ss_pred             CCcccchhhhhhcChhHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          307 EPVKTIPWGLILSKPPVWA-----LIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       307 ~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      ++.+..+++++++++..+.     +.+....+..+.++..+|...++.+ -|++..++.+.....++
T Consensus       251 ~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~  316 (485)
T KOG0569|consen  251 EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGI  316 (485)
T ss_pred             ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence            2235678889999876553     2333334555667788888888888 59999988777665543

>PTZ00207 hypothetical protein; Provisional

Probab=99.82  E-value=3.3e-18  Score=162.42  Aligned_cols=180  Identities=16%  Similarity=0.118  Sum_probs=149.3

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      ..++|..+..........+ ..+.++...+.+++++|++..+++++.++. ....+++++.|++.||+|+|+++.++.++
T Consensus        23 e~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            3456776665555554443 345677888999999999999999998874 44567788899999999999999999999


Q ss_pred             HHHHHHHhhhh------hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHH-HHHhHH
Q 017461          179 WSIATALTPVA------AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSP  251 (371)
Q Consensus       179 ~~i~~~~~~~~------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~  251 (371)
                      ++++.++++++      .  +++.+++.|++.|+|.+...+.+...+.+||| ++||++.|+...+.++|.++ +++..+
T Consensus       101 ~~iG~ll~ala~~~~i~~--s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~  177 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEG--SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA  177 (591)
T ss_pred             HHHHHHHHHHHhcccccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998      5  89999999999999999998999999999995 78999999999999999976 455555


Q ss_pred             HHhcccCchhHHHHHhHHHHHHHHHHhhcccCCC
Q 017461          252 FLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (371)
Q Consensus       252 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                      ++.  .+|++.|++.++++++..++.+.+.++++
T Consensus       178 l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        178 FFS--DNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            544  36889999999998888887777776654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.81  E-value=1.4e-18  Score=162.55  Aligned_cols=242  Identities=14%  Similarity=0.052  Sum_probs=151.8

Q ss_pred             HHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh---h
Q 017461          113 FLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---V  188 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~  188 (371)
                      .++..+......+.++. +.+++|++..+.|++.+++.++..+++++.|+++||+|||++++++..+.+++.....   .
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   98 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333434445555555 5666999999999999999999999999999999999999999887766655443221   1


Q ss_pred             hhcc---ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHH
Q 017461          189 AAKL---GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       189 ~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      ++..   .+...++++++.|.+.....+....+..+ . .+++++.+|......++|.+++|++++.+.+ .+|+++|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~  175 (420)
T PRK09528         99 APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWL  175 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHH
Confidence            1100   11112233444444333333333333322 2 3456778889899999999999999999887 589999999


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      .+++.++..++.++..++++++.... +++       ...+++......++++|+|.++.+.+..++....+.....++|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~  247 (420)
T PRK09528        176 GSGSALILLVLLFFAKPDAPSTAKVA-NAL-------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFP  247 (420)
T ss_pred             HHHHHHHHHHHHhcccccccchhhhc-cch-------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHH
Confidence            88887776666655544433221100 000       0001111223455688899887766665555555555666777


Q ss_pred             HHHHHhc---CCChhhhhhhhhh
Q 017461          346 TYYNQVS---SFGSKTLSETVQV  365 (371)
Q Consensus       346 ~~l~~~~---g~s~~~~~~~~~~  365 (371)
                      .|+.+.+   +.+..+.+.+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~~  270 (420)
T PRK09528        248 NFFASFFATPEQGTRVFGYLNSF  270 (420)
T ss_pred             HHHHHHHhccCcchHHHHHHHHH
Confidence            7776543   5555666665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.81  E-value=6.1e-18  Score=159.98  Aligned_cols=249  Identities=19%  Similarity=0.239  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      .++.+.++..++..+.....+-+..+..-|+..++++..+..+...+.++++|.++||++||++++.+-++.++..++.+
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~   93 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLA   93 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666666666666899999999999999999999999999999999999999988776654444


Q ss_pred             hh---hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          188 VA---AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       188 ~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      +.   ...+.|.+++.-++.|++.+...|+..+++.|..|+++...++++.+...++..++||.++|.+....|-.++|+
T Consensus        94 ~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen   94 VLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            32   223788999999999999999999999999999999999999999999999999999999999999889899999


Q ss_pred             HHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 017461          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (371)
                      +.++..++..+++..+.++.+..+ .  ..+.-         .......++-+.++|.+....+..++..+....+...+
T Consensus       174 inalsfl~~i~~l~~~~~~~~~~~-~--~~e~~---------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLl  241 (524)
T PF05977_consen  174 INALSFLISILALLRWKPPPPPSS-L--PRERF---------FSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALL  241 (524)
T ss_pred             HHHHHHHHHHHHHHHccccccccc-c--chhhh---------hhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhh
Confidence            888765555444444333221111 1  11100         00113345556667777766666666666666677788


Q ss_pred             HHHHHHhcCCChhhhhhhhhheee
Q 017461          345 PTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       345 ~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      |.+.++.+|.++...|++.+..++
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gv  265 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGV  265 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999899999999998876653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.80  E-value=1.2e-18  Score=167.42  Aligned_cols=151  Identities=21%  Similarity=0.245  Sum_probs=136.8

Q ss_pred             hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhc
Q 017461          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (371)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  210 (371)
                      .+.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.++++  |++.+++.|+++|++.++
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence            355667888899999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCC
Q 017461          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (371)
Q Consensus       211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                      ....+..+++|++++++|+.+..+ ......++.+++.+++++..  +||+.+++..++.++.+++ +++.+|+++.
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rw  260 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRW  260 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHH
Confidence            999999999999999999999999 77777778888888888877  8999999999888877666 5556677764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.80  E-value=2.3e-17  Score=152.77  Aligned_cols=243  Identities=11%  Similarity=0.042  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHH--HHHHHHHHHHHHHHHHH-hhhhhCCchhHHHHHHHH-HH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI--QSSFFWGYLLTQIAGGI-WADTVGGKAVLGFGVVWW-SI  181 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~~~~~~~~~-~i  181 (371)
                      +..++..++..+.......+.+|.+.++.|.+.+++|++  .+...+...+.+|+++. ..||+||||..++++.+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455667778888888889999999999999999999997  46667888888888855 799999999976665432 22


Q ss_pred             HHHHhh---hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          182 ATALTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       182 ~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .....+   .... ...+++...++.++..+...+....+..|..++++++.+.+....+..+|.++|+.+.+++.+.+|
T Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g  161 (390)
T TIGR02718        83 CLASLALVGPDVA-GAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG  161 (390)
T ss_pred             HHHHHHcCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222222   2221 233445555666677777888888899999988888989999988889999999999999999999


Q ss_pred             chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHH
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (371)
                      ||..|++.+++.++..+..++..++++.+++ ...               ....++++++|+|.++...+..++......
T Consensus       162 w~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  225 (390)
T TIGR02718       162 QRPAFLLVACVPLASLVCVLWLKDRAVASPE-APL---------------ARRASLFRFFRRPLAWSLLALALLSAMTAV  225 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-cch---------------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence            9999999998887766665555444322111 000               012346678999998888888888888788


Q ss_pred             HHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          339 ILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       339 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ....+.+.|+.+ .|+++.++|.+....
T Consensus       226 ~~~~~~~~~l~~-~G~s~~~ig~~~~~~  252 (390)
T TIGR02718       226 SGFGLSKLYLVD-AGWPLEWIGRLGMAG  252 (390)
T ss_pred             HHHHHhhHHHHh-cCCCHHHHHHHHhHH
Confidence            888899999988 699999999987654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=3.1e-17  Score=141.95  Aligned_cols=188  Identities=16%  Similarity=0.258  Sum_probs=167.3

Q ss_pred             cccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHH
Q 017461           96 WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  175 (371)
                      ....+.+|...+.....++...+-....+.+.|.+.+.+|.+..+..++......|..+++..+|.++|++|||+.+.+.
T Consensus        70 igfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T  149 (528)
T KOG0253|consen   70 IGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT  149 (528)
T ss_pred             cCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence            34567788888888888888877777778888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       176 ~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      .+...+...+.+.++  |+..+++.|.+.|+|.|+ .|...++-.|..|..+|+..+=+. ..+.+|.++...+...++.
T Consensus       150 ~l~t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~  225 (528)
T KOG0253|consen  150 FLVTGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS  225 (528)
T ss_pred             HHHHHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999  999999999999999999 788889999999999998877666 9999999999999999999


Q ss_pred             ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCC
Q 017461          256 RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (371)
Q Consensus       256 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      ++||||.+.... ..+..+..+.++.+|+++..
T Consensus       226 ~~gwr~~l~~~~-~pl~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  226 NFGWRYLLFTSS-TPLMFAARFLVWVYESPRFY  257 (528)
T ss_pred             hhhHHHHHHHHH-hHHHHHHHHHhhcccCcchh
Confidence            999999888777 44455566677889988754

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.77  E-value=8.2e-17  Score=153.20  Aligned_cols=164  Identities=18%  Similarity=0.235  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~  185 (371)
                      .+++..+...+..+.+...++. +.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555444 678999999999999888877777777899999999 59999999999999999999


Q ss_pred             hhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcc--hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHH
Q 017461          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (371)
Q Consensus       186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  263 (371)
                      ++++.+ +.+.++++++++|+|.|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+.+|||+.|
T Consensus       105 ~~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        105 VAWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             HHHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            988741 45667788999999999988999999999997643  456788899999999999999999999999999999


Q ss_pred             HHHhHHHHH
Q 017461          264 YSFGSLGTV  272 (371)
Q Consensus       264 ~~~~~~~~~  272 (371)
                      ++.++..++
T Consensus       184 ~i~~i~~~i  192 (500)
T PRK09584        184 ALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHH
Confidence            987754444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.2e-18  Score=153.27  Aligned_cols=263  Identities=14%  Similarity=0.151  Sum_probs=189.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc-C-------CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q 017461           97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-N-------WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG  168 (371)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr  168 (371)
                      ...+++...+.+..++.+.+.++..+++.+.+.+...| |       +++...+.+..+..+|.++|+++.|++.||+||
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            44667788888999999999999999999998887655 2       445667889999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhcc-----ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHH
Q 017461          169 KAVLGFGVVWWSIATALTPVAAKL-----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS  243 (371)
Q Consensus       169 r~~~~~~~~~~~i~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  243 (371)
                      |+++...++++.++++++++....     -++++...|++.|+|.|+-+|+..++.+|....++||...+.+....+.|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            999999999999999977776421     267888899999999999999999999999999999999999888888888


Q ss_pred             HHHHHhHHHHhcc---------------cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCC--ChHHHHH--------
Q 017461          244 VTGLAFSPFLIHR---------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL--RPAEKKL--------  298 (371)
Q Consensus       244 ~~g~~~~~~l~~~---------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------  298 (371)
                      ..|.+++-.+..-               .=||..|.+.++++++.+..-+ ..||+++...-.  +.+....        
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~a~~d~~k~~~~  272 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQAAGDMKKVLSV  272 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhhhhhcccccccc
Confidence            8877776655321               1289888887766665544333 345555433000  0000000        


Q ss_pred             -Hhhh--ccCCCCcccc---hhhhhhcC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhh
Q 017461          299 -IVSS--CASKEPVKTI---PWGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSE  361 (371)
Q Consensus       299 -~~~~--~~~~~~~~~~---~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~  361 (371)
                       ..++  .....+.+..   .+...+..   +.+...+..+|+...++|....+....++. .|+.+....+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~  343 (538)
T KOG0252|consen  273 DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTY  343 (538)
T ss_pred             ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchH
Confidence             0000  0000010111   12222222   456678888899999999999998888887 4666554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.76  E-value=1e-17  Score=157.49  Aligned_cols=230  Identities=15%  Similarity=0.109  Sum_probs=168.6

Q ss_pred             hhhhhh-hhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh----hCCc-hhHHHHHHHHHHHHHHhhhhhcc-
Q 017461          120 RVNMSI-AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGK-AVLGFGVVWWSIATALTPVAAKL-  192 (371)
Q Consensus       120 ~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~~-  192 (371)
                      ...+.. ..+.+.+++|+++.++|++.++..+..++..|+.|+++||    +||| +.++++.++++++.+++.+.++. 
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~   94 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS   94 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC
Confidence            333443 4555778899999999999999999999999999999998    6774 46778888888888887776521 


Q ss_pred             ---ChhHHHHHHHHHHhhhhchhhhHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHhHHHHh-------cccCchh
Q 017461          193 ---GLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLI-------HRFGWPS  261 (371)
Q Consensus       193 ---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~gw~~  261 (371)
                         ..+.+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|.++++.+.+.+.       +..|||+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~  174 (437)
T TIGR00792        95 ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFM  174 (437)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHH
Confidence               1456777788899998888788888889987 4689999999999888888887776665554       2468999


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 017461          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (371)
Q Consensus       262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  341 (371)
                      .+++.+++.++..++.++..+|++.+.+...            +++......++.++++|.++...+..++...+.+...
T Consensus       175 ~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (437)
T TIGR00792       175 FALVLALIGVVSLIICFFGTKERYSEIPKNI------------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKN  242 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEecCCCCCccc------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999888877777666666542211100            0001112356778899999988888888877777776


Q ss_pred             HhhHHHHHHhcCCChhhhhhh
Q 017461          342 TWMPTYYNQVSSFGSKTLSET  362 (371)
Q Consensus       342 ~~~~~~l~~~~g~s~~~~~~~  362 (371)
                      .+.+.|.+..++ ++...+.+
T Consensus       243 ~~~~~~~~~~~~-~~~~~~~~  262 (437)
T TIGR00792       243 GVQVYYFTYVLG-DPELFSYM  262 (437)
T ss_pred             chhheeEeeecC-ChHHHHHH
Confidence            666666665555 34444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.76  E-value=4.4e-17  Score=154.93  Aligned_cols=264  Identities=16%  Similarity=0.204  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      .+.++.+..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|..|-+.+-+|+++++++.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            34455556666666667777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh-----------------------------------------------ccC--hh-HHHHHHHHHHhhhhchhhh
Q 017461          185 LTPVAA-----------------------------------------------KLG--LP-FLLVVRVFMGIGEGVAMPA  214 (371)
Q Consensus       185 ~~~~~~-----------------------------------------------~~~--~~-~l~~~r~l~G~~~~~~~~~  214 (371)
                      ++++-+                                               ..+  +| .++++.++.|+|....++.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            988752                                               000  33 6677799999999999999


Q ss_pred             HHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc------------------C-chhHHHHHhHHHHHHHH
Q 017461          215 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF------------------G-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       215 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------------g-w~~~f~~~~~~~~~~~~  275 (371)
                      +.+|+-|....++-+.++|+......+|.++|-++++++...+                  | |..-|++.+.+.++..+
T Consensus       258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~  337 (735)
T KOG3626|consen  258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV  337 (735)
T ss_pred             CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886421                  2 66667788888888888


Q ss_pred             HHhhcccCCCCCCCCCChHHHHHHhhhcc--CCCC-------cccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          276 VWLSKAHSSPAEDPQLRPAEKKLIVSSCA--SKEP-------VKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      .++++.++.|...++...++.+....+..  ..+.       .....++.+++||.+...+++..+....+.++.+|+|.
T Consensus       338 p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPK  417 (735)
T KOG3626|consen  338 PLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPK  417 (735)
T ss_pred             HHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHH
Confidence            88877777665543322222111111111  0111       11334667899999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhhhheee
Q 017461          347 YYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      |++..+|.++..+..++..+++
T Consensus       418 yLE~Qfg~sas~An~l~G~i~v  439 (735)
T KOG3626|consen  418 YLETQFGISASLANILTGSIGV  439 (735)
T ss_pred             HHHHHcCCCHHHHHHHhhhhhh
Confidence            9999999999999998866554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.75  E-value=1.5e-16  Score=148.38  Aligned_cols=224  Identities=11%  Similarity=-0.019  Sum_probs=153.2

Q ss_pred             HHHHHHHhhhhhh-hhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCC-chhHHHHHHHHHHHHHHhhh
Q 017461          111 SAFLLCNMDRVNM-SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~  188 (371)
                      +.++..+....++ +++.+.+.+++|++..++|++.+++.++..++++++|.++||+|+ |+++.++.++.+++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555 455566788899999999999999999999999999999999965 77888888888888888888


Q ss_pred             hhccChhHHHHHHHHHHhhhhchhhhHHHHHh--------cccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCch
Q 017461          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS--------KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (371)
Q Consensus       189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  260 (371)
                      .+  +++.+++.|++.|++.+...+...++..        |......|.+..|      .+|.++||.+++.+....+|.
T Consensus        89 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~  160 (418)
T TIGR00889        89 VT--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI  160 (418)
T ss_pred             hc--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH
Confidence            88  8999999999999987777666555432        2222223444444      468888899888874433454


Q ss_pred             hHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (371)
                       +|++.+++.++..++ .+..||.+..+++++....           +......++++|+|+++.+.+..++........
T Consensus       161 -~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~-----------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  227 (418)
T TIGR00889       161 -QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIK-----------VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQIT  227 (418)
T ss_pred             -HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHH-----------HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHH
Confidence             355666655555544 3455665432211110000           000123456889999888888877777666667


Q ss_pred             HHhhHHHHHHhcCCCh
Q 017461          341 LTWMPTYYNQVSSFGS  356 (371)
Q Consensus       341 ~~~~~~~l~~~~g~s~  356 (371)
                      ..+++.|+++ .|.++
T Consensus       228 ~~~~~~~~~~-~g~~~  242 (418)
T TIGR00889       228 NIFGNGFLHE-FGRNP  242 (418)
T ss_pred             HHhHHHHHHH-hcccc
Confidence            7888888877 46554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.74  E-value=6.5e-16  Score=143.93  Aligned_cols=233  Identities=17%  Similarity=0.118  Sum_probs=169.6

Q ss_pred             HhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh----hhCCchhHHHH-HHHHHHHHHHhhhhhc
Q 017461          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAVLGFG-VVWWSIATALTPVAAK  191 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~  191 (371)
                      .+......+..+.+.+++|.+....+++..+..+...+.+|+.|.++|    |+|||+.++++ .+..+++.++.++++ 
T Consensus        17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~-   95 (477)
T TIGR01301        17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAA-   95 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCc-
Confidence            344455556666778899999999999999999999999999999999    59999998874 666667777777766 


Q ss_pred             cCh-----------------hHHHHHHHHHHhhhhchhhhHHHHHhcccCCcch--HHHHHHHHHHHHHHHHHHHHhHHH
Q 017461          192 LGL-----------------PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPF  252 (371)
Q Consensus       192 ~~~-----------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~  252 (371)
                       +.                 +.++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.++|+.++++
T Consensus        96 -~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301        96 -DIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             -hhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             43                 2333444455567777888889999999998865  689999999999999999999987


Q ss_pred             H--hccc-------------CchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhh
Q 017461          253 L--IHRF-------------GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLI  317 (371)
Q Consensus       253 l--~~~~-------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  317 (371)
                      +  .+.+             +.|+.|++.+++.++..++..+..+|.+....+...+++    .++.++. .....++++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~i  249 (477)
T TIGR01301       175 SGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE----AAPPSKH-GEEAFFGEL  249 (477)
T ss_pred             HhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh----ccccccc-chhhhHHHH
Confidence            5  2211             568899998888888888888888887643221111000    0000010 111233444


Q ss_pred             hcC-----hhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hcCCCh
Q 017461          318 LSK-----PPVWALIVSHFCHNWGTFILLTWMPTYYNQ-VSSFGS  356 (371)
Q Consensus       318 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~  356 (371)
                      ++.     +.++.+++..++.+++++.+..|.+.|+.+ .++-++
T Consensus       250 ~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~  294 (477)
T TIGR01301       250 FGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV  294 (477)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC
Confidence            432     668899999999999999999999998864 565443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.72  E-value=6.6e-17  Score=126.82  Aligned_cols=137  Identities=23%  Similarity=0.417  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccC
Q 017461          145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP  224 (371)
Q Consensus       145 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  224 (371)
                      .+.+.++..++.++.|++.||+|||+.+.++..+..++.++..+.+  +++.+++.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3456788899999999999999999999999999999999888888  89999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccC
Q 017461          225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (371)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  283 (371)
                      +++|++..++......+|..+++.+++.+.+..+|++.|++.+++.++..+..++..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999998999999999888877777776665554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.72  E-value=5e-16  Score=145.28  Aligned_cols=164  Identities=15%  Similarity=0.220  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHHHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~  185 (371)
                      .++...+...+..+.+...+|. +.+++|++..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll   92 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV   92 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence            3344444455555556555655 5677999999999999999999999999999999999 9999999999999999877


Q ss_pred             hhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCc--chHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHH
Q 017461          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (371)
Q Consensus       186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  263 (371)
                      ++.... +...++++..+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+.+||++.|
T Consensus        93 l~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F  171 (493)
T PRK15462         93 LGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF  171 (493)
T ss_pred             HHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence            765431 2233445555566777777787889999999875  7999999999999999999999999999999999999


Q ss_pred             HHHhHHHHH
Q 017461          264 YSFGSLGTV  272 (371)
Q Consensus       264 ~~~~~~~~~  272 (371)
                      .+.++..++
T Consensus       172 ~iaaigm~l  180 (493)
T PRK15462        172 GLAAVGMIA  180 (493)
T ss_pred             HHHHHHHHH
Confidence            987654333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.72  E-value=3.1e-20  Score=175.31  Aligned_cols=177  Identities=20%  Similarity=0.184  Sum_probs=145.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhh--hhcCCC---------cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461          110 FSAFLLCNMDRVNMSIAILPMS--AEFNWN---------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      .++.+..+++...++...+...  ..+..+         ..+.+++.+...+|..+|+++.|.++||+|||+.+.++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3444677777776665555443  222222         23468999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcc-ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          179 WSIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       179 ~~i~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      ..++.++.++++.. |++.++++|++.|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+....
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999998743 68999999999999999999999999999999999999999999999999999988876654433


Q ss_pred             ---CchhHHHHHhHHHHHHHHHHhhcccCCCCC
Q 017461          258 ---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (371)
Q Consensus       258 ---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                         +||+.+++.++++++..+.. .+.||+|+.
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~w  197 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLR-FFLPESPRW  197 (451)
T ss_pred             ccccccccccccccccccccccc-cccccccce
Confidence               49999999888877655544 667888764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00889 2A0110 nucleoside transporter

Probab=99.69  E-value=1.5e-15  Score=141.69  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=135.8

Q ss_pred             hhhhhhhhhcCCCc--------chHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhcc--Ch
Q 017461          125 IAILPMSAEFNWNP--------ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL--GL  194 (371)
Q Consensus       125 ~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~  194 (371)
                      ...+.+.++.|.++        ...+.+.++..++..++.++.|+++||+|+|+++.++.++.+++.++.......  ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            44455555665443        567999999999999999999999999999999999999998887777664210  24


Q ss_pred             hHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHH-HHHHHHHHHHHHhHHHHhcc------cCchhHHHHHh
Q 017461          195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHR------FGWPSVFYSFG  267 (371)
Q Consensus       195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~gw~~~f~~~~  267 (371)
                      +.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ....+|.++||+++|.+.++      +||+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            567778999999999888888999999999999999999997 67889999999999999987      46999999999


Q ss_pred             HHHHHHHHHHhhcccCCCC
Q 017461          268 SLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~  286 (371)
                      ++.++..++.+++.+|+..
T Consensus       389 ~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHHHHHHhCCccc
Confidence            9988888888888876633

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.69  E-value=2.4e-18  Score=163.23  Aligned_cols=255  Identities=15%  Similarity=0.175  Sum_probs=3.0

Q ss_pred             HHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhh---
Q 017461          114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---  190 (371)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---  190 (371)
                      ++..+........+..+++.|+++.++.|++.+.+-++.++..++..++.+|..|-+.+.+|.+++++|++++++-+   
T Consensus        13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence            33355666677888899999999999999999999999999999999999998888999999999999998876532   


Q ss_pred             ---------------------c------------------------cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCC
Q 017461          191 ---------------------K------------------------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV  225 (371)
Q Consensus       191 ---------------------~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  225 (371)
                                           .                        .-+..++++.++.|+|....++++.+|+-|..++
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~  172 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK  172 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence                                 0                        0156788889999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------------------cC-chhHHHHHhHHHHHHHHHHhhcccC
Q 017461          226 AERSRSLALVYSGMYLGSVTGLAFSPFLIHR---------------------FG-WPSVFYSFGSLGTVWFTVWLSKAHS  283 (371)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~g-w~~~f~~~~~~~~~~~~~~~~~~~~  283 (371)
                      ++-+.++|++.....+|.++|-++++.+...                     .| |..-|++.+++.++..+.++.++++
T Consensus       173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  173 KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            9999999999999999999999999876542                     12 6566677777777777777766665


Q ss_pred             CCCCCCCCChH---HHH---HH-hhhccC--------CCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017461          284 SPAEDPQLRPA---EKK---LI-VSSCAS--------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (371)
Q Consensus       284 ~~~~~~~~~~~---~~~---~~-~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  348 (371)
                      -|...+.....   +.+   .. .+..+.        .-+.-....+.+++||.+....++..+......++.+++|.|+
T Consensus       253 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKyl  332 (539)
T PF03137_consen  253 LPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYL  332 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55541111000   000   00 000000        0122234567789999999999999999999999999999999


Q ss_pred             HHhcCCChhhhhhhhhheee
Q 017461          349 NQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       349 ~~~~g~s~~~~~~~~~~~~~  368 (371)
                      +..++.++.+++++.....+
T Consensus       333 E~QF~~sas~A~~l~G~v~i  352 (539)
T PF03137_consen  333 ESQFGLSASQASLLTGIVSI  352 (539)
T ss_dssp             --------------------
T ss_pred             HHHhCCCHHHHHHHHhhhhc
Confidence            99999999999988765543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.69  E-value=5.5e-15  Score=135.45  Aligned_cols=258  Identities=16%  Similarity=0.172  Sum_probs=185.7

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCC-chhHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFG  175 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~  175 (371)
                      .+.+|+.+.++.+..++.....+++.+..-++.++  .+.+.+..|++.++..++.+++++..|++..|.+. |+.++.+
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            34567788888888888888888877776555555  66678889999999999999999999999999996 8899999


Q ss_pred             HHHHHHHHHHh-hhhh--ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHH
Q 017461          176 VVWWSIATALT-PVAA--KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (371)
Q Consensus       176 ~~~~~i~~~~~-~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (371)
                      .++.++|.++. ++..  +...+.++++|++.|+|.|. ....-+|+++....++|.++++....+..+|.++||.++.+
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            99999999998 4432  12578999999999999774 57788999998888999999999999888999999888876


Q ss_pred             Hhcc--cC-----------chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhc
Q 017461          253 LIHR--FG-----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS  319 (371)
Q Consensus       253 l~~~--~g-----------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  319 (371)
                      +...  .|           +..+-|+.+++.++.++.+.++.+|..+...+++.++.++...+ .++.+..+.++     
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~-----  261 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSD-IEKVKKPKLDW-----  261 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccc-hhhhccCChhH-----
Confidence            6531  11           24566888888888888888888887776544433222100000 00011111111     


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                       +..+...+..+...+.+....+..+.+....++++..++.....
T Consensus       262 -~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~g  305 (488)
T KOG2325|consen  262 -VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNG  305 (488)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhh
Confidence             22234444555556666666777777777667877766655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=3.4e-15  Score=133.20  Aligned_cols=259  Identities=13%  Similarity=0.125  Sum_probs=204.5

Q ss_pred             cccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHH
Q 017461           96 WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  175 (371)
                      .+..++||.+++++.+..+.+.+....+++...+....|| +.+..-|+..+|++.+....+++-|+.|++|-|..++++
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            4678899999999999999998888888888888888999 888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcc----Chh--HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHh
Q 017461          176 VVWWSIATALTPVAAKL----GLP--FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF  249 (371)
Q Consensus       176 ~~~~~i~~~~~~~~~~~----~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  249 (371)
                      ..+.++|..+-..+...    .++  ..+++..+.++++-.+...-..+..-||++++|..+..+-.++..+|.++|.++
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            99999999887766421    345  778899999999888888878889999999999999999999999999999888


Q ss_pred             HHHHhccc------Cchh--HHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcCh
Q 017461          250 SPFLIHRF------GWPS--VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKP  321 (371)
Q Consensus       250 ~~~l~~~~------gw~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  321 (371)
                      ...+..+-      .|..  .|+..+.++.+.+++..+..+++|..++........         +..-....+.+++++
T Consensus       196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n~  266 (480)
T KOG2563|consen  196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKNR  266 (480)
T ss_pred             cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcCc
Confidence            88776543      3533  455555555555566666666655554433322221         111245678899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhh
Q 017461          322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~  365 (371)
                      +|.++.+++......+++..+.+..-+.. .|++...+|++...
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l  309 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGAL  309 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHH
Confidence            99999999999998889888888766655 47776666665443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.68  E-value=1.1e-15  Score=140.55  Aligned_cols=150  Identities=11%  Similarity=0.069  Sum_probs=129.2

Q ss_pred             hhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHH
Q 017461          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  203 (371)
                      ....+.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.+..+.+.+++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            34455567788988889999999999999999999999999999999999999999988888777662223345566788


Q ss_pred             HHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHH
Q 017461          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (371)
Q Consensus       204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  273 (371)
                      .|++.+...+....++.|.+|+++|+++.|+......+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8988888888888899999999999999999999999999999999999999999999999887766654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.67  E-value=1.1e-15  Score=143.11  Aligned_cols=149  Identities=10%  Similarity=0.074  Sum_probs=131.0

Q ss_pred             hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchh
Q 017461          133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM  212 (371)
Q Consensus       133 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  212 (371)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.++++  +.+.+++.+++.|++.+...
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence            3466677889999999999999999999999999999999999999999988888888  89999999999999988888


Q ss_pred             hhHHHHHhcccCCcchHHHHHH-HHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccC
Q 017461          213 PAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (371)
Q Consensus       213 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  283 (371)
                      +....++.|.+|++.|+...+. ++....+|.++++.++|++.+..||+..|++.+++.++..++.++..++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888999999999998887665 6777889999999999999999999999999888877776666655554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.67  E-value=8.4e-15  Score=136.09  Aligned_cols=157  Identities=17%  Similarity=0.165  Sum_probs=132.9

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      .....+.+.++.|.  ...++..+.+.++..++.++.|++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  310 (399)
T PRK05122        235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence            33445554455565  3456777888899999999999999999999999999998888888888887  8888888999


Q ss_pred             HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhccc
Q 017461          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  282 (371)
                      +.|++.+...+.....+.|.+|+++|+++.+++.....+|..+++.+.|.+.+..||++.|++.+++.++..++.++..+
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888888899999999999999999999999999999999999999999999988887777666655544


Q ss_pred             C
Q 017461          283 S  283 (371)
Q Consensus       283 ~  283 (371)
                      +
T Consensus       391 ~  391 (399)
T PRK05122        391 R  391 (399)
T ss_pred             c
Confidence            3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.67  E-value=9.6e-15  Score=135.38  Aligned_cols=155  Identities=13%  Similarity=0.089  Sum_probs=128.1

Q ss_pred             hhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHH
Q 017461          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       123 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  201 (371)
                      +....|. +++++|++..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.+  +.+.+++.+
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~  312 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            3344554 5677899999999998888888888999999999999999988877766666655555566  788888899


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhc
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  280 (371)
                      ++.+++.|...+....+..|.+| ++|+++.++++....+|..+++.++|.+.+..||+..|++.+++.++.+++.++.
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99988888777777888899997 5699999999999999999999999999999999999998887777766555543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.66  E-value=7.6e-15  Score=143.77  Aligned_cols=139  Identities=11%  Similarity=0.043  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcc
Q 017461          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW  222 (371)
Q Consensus       143 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  222 (371)
                      +...+..++..++.++.|+++||+|||++++++.++.+++.++.++.+  +.+.+++++++.|++.+..++...++++|+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566788999999999999999999999999999999999999998  888888889999998888899999999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCC
Q 017461          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (371)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                      +|.+.|++++|+......+|.++||++++.+.+. +...+|++.+++.++.+++.++ +||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            9999999999999999999999999999988764 4567787777776666555554 46543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.66  E-value=2.6e-14  Score=136.23  Aligned_cols=170  Identities=12%  Similarity=0.101  Sum_probs=126.0

Q ss_pred             hhhhhhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHH-hhhhhccChh
Q 017461          118 MDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL-TPVAAKLGLP  195 (371)
Q Consensus       118 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~~~~~~~~~  195 (371)
                      ...+.+....|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..++.+. .......+..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            3444455566765 4678988888888888889999999999999999999999988887654443322 2222211577


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc-CchhHHHHHhHHHHHHH
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWF  274 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~~~~~~~~~  274 (371)
                      .+++++++.|++.+........++.|.+|++.|++++|+......+++.++|.+.+++.+.. +|+.++++..+++++.+
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            78888999998887777778888999999999999999855555666788999999888754 47777776666666555


Q ss_pred             HHHhhcccCCCCCC
Q 017461          275 TVWLSKAHSSPAED  288 (371)
Q Consensus       275 ~~~~~~~~~~~~~~  288 (371)
                      +..+ +.||+++..
T Consensus       424 ~~~~-~~pes~~~~  436 (490)
T PRK10642        424 ITGV-TMKETANRP  436 (490)
T ss_pred             HHHH-HhccccCCC
Confidence            5544 457776643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.65  E-value=1.1e-14  Score=132.23  Aligned_cols=164  Identities=24%  Similarity=0.371  Sum_probs=146.2

Q ss_pred             HHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCch-hHHHHHHHHHHHHHHhhhhhc
Q 017461          114 LLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-VLGFGVVWWSIATALTPVAAK  191 (371)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~  191 (371)
                      +.............+.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||+ .+.++.++..++.++..+.+ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  263 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP-  263 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-
Confidence            33444445555666666555 4889999999999999999999999999999999999 99999999999999999988 


Q ss_pred             cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHH
Q 017461          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT  271 (371)
Q Consensus       192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~  271 (371)
                       +.+.+++..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+.+..||++.+++.+++.+
T Consensus       264 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         264 -SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             -cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999998999999999998888


Q ss_pred             HHHHHHhh
Q 017461          272 VWFTVWLS  279 (371)
Q Consensus       272 ~~~~~~~~  279 (371)
                      +..++.++
T Consensus       343 i~~i~~~~  350 (352)
T cd06174         343 LAALLLLL  350 (352)
T ss_pred             HHHHHhee
Confidence            77665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.65  E-value=2.2e-14  Score=133.00  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=132.7

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      .....+.+.++.+.+  ..++..+.+.++..+++++.|++.||+|+|+.+.++..+.+++.++..+.+  +.+.++++.+
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHHHHH
Confidence            444455555566654  356667778888899999999999999999999999999999888888887  8888888999


Q ss_pred             HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcc
Q 017461          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  281 (371)
                      +.|++.+...+...+.+.|.+|+++||++.|++.....+|..++|.+.+.+.+..||++.|++.+++.++..++.+++.
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999888888888999999999999999999999999999999999999999999999999888777766665543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.64  E-value=1.7e-14  Score=134.44  Aligned_cols=157  Identities=15%  Similarity=0.022  Sum_probs=131.1

Q ss_pred             hhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHH
Q 017461          122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  201 (371)
                      ......|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|+|+.+.++.+..+++.++..+.+  +.+.+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            344456777788899999999999999999999999999999999999999888777777777777777  778888888


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHHHHhhc
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~  280 (371)
                      ++.|++.++..+...+++.|.+|+++|++++|+......+|..+||.++|.+.++.+ |...+++.+.+.++..++.++.
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            899998888888899999999999999999999999999999999999999988654 5556665555555544444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.63  E-value=2.4e-14  Score=132.19  Aligned_cols=155  Identities=12%  Similarity=0.032  Sum_probs=136.6

Q ss_pred             hhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHH
Q 017461          119 DRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLL  198 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~  198 (371)
                      .........|.+.+++|.+..++|++.++..++..++.++.+++.||+|.|+.+.++.++.++..++.++++  +.+.++
T Consensus       220 ~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~  297 (382)
T TIGR00902       220 AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--AFPLIF  297 (382)
T ss_pred             HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--hHHHHH
Confidence            333444556666677999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHH-HHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHH
Q 017461          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      +.++++|++.+...+....++.+. |+++|+++.++++ ...++|.++|+.++|.+.+++|+ ..|++.+++.++.+++.
T Consensus       298 ~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       298 LLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998 8999999999986 57889999999999999999997 66888787777654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.63  E-value=8.2e-15  Score=136.52  Aligned_cols=159  Identities=17%  Similarity=0.165  Sum_probs=132.8

Q ss_pred             hhhhhhhhhhhcCCCcc----hHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHH
Q 017461          123 MSIAILPMSAEFNWNPA----TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLL  198 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~  198 (371)
                      ..+..+.+.++.+.+..    ..+.+.++..++..++.++.|++.||+|||+.+.++.++.+++.+...+.+  +.+.++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  315 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQLG  315 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHHH
Confidence            34445554444332332    245666777888889999999999999999999999988888888777777  888888


Q ss_pred             HHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                      +.+++.|++.+...+...+++.+..++++||+.++++.....+|..+||.++|.+.+..||++.|++.+++.++..++.+
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888777666


Q ss_pred             hcccC
Q 017461          279 SKAHS  283 (371)
Q Consensus       279 ~~~~~  283 (371)
                      +..++
T Consensus       396 ~~~~~  400 (408)
T PRK09874        396 NSLRR  400 (408)
T ss_pred             HHHHH
Confidence            54443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.63  E-value=2.3e-14  Score=135.88  Aligned_cols=171  Identities=13%  Similarity=0.033  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      +++..++............|. +.+++|++..+.++..+...++..++.+++|+++||+|||+.+.+...+..++..+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~  342 (467)
T PRK09556        263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV  342 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence            334444444444445566675 5677999999999999999999999999999999999999887766554444332222


Q ss_pred             hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhc-----------
Q 017461          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIH-----------  255 (371)
Q Consensus       188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~-----------  255 (371)
                      +....+.+.+.+.+++.|++...........+.|.+|++.||.+.|+.+....+ |..++|.+.|.+.+           
T Consensus       343 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~  422 (467)
T PRK09556        343 YQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY  422 (467)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence            222116666778888888654443334446777999999999999999988886 77999999999999           


Q ss_pred             -ccCchhHHHHHhHHHHHHHHHHhh
Q 017461          256 -RFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       256 -~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                       ..||+..|++.+++.++.+++.++
T Consensus       423 ~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        423 TLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHH
Confidence             578999999887777766555443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.63  E-value=4.3e-14  Score=130.91  Aligned_cols=152  Identities=15%  Similarity=0.066  Sum_probs=125.1

Q ss_pred             hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH-HhhhhhccChhHHHHHHHHHH
Q 017461          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVVRVFMG  205 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~~r~l~G  205 (371)
                      .+.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|... .+..+..++.. +....+  +.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN--SEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHH
Confidence            3445666899999999999999999999999999999999988654 44444444443 334555  7888888999999


Q ss_pred             hhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhccc
Q 017461          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (371)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  282 (371)
                      ++.+...+.....+.+..| ++|++++|++.....+|..+||+++|.+.++.|++..|++.+++.++.++..++..+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9988777777788888875 688999999999999999999999999999999999999999888877776666554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.62  E-value=5.3e-14  Score=129.45  Aligned_cols=150  Identities=12%  Similarity=0.058  Sum_probs=127.8

Q ss_pred             hhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHH
Q 017461          127 ILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG  205 (371)
Q Consensus       127 ~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  205 (371)
                      .|. +.+++|.++.+.+++.....+...++.++.|++.||+|||+++.++.++..+..+...+.+  +.+.+++.+++.|
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g  299 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLLNA  299 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            444 4677899999999998888778888899999999999999999888877777666666667  7888888899999


Q ss_pred             hhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhh
Q 017461          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      ++.+...+....++.|..|+ +++.+++++.....+|..++|.++|.+.+..||+..|++.+++.++..++..+
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            99998888888899999864 67799999999999999999999999999999999999988877766665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.61  E-value=4e-14  Score=132.32  Aligned_cols=162  Identities=13%  Similarity=0.041  Sum_probs=140.2

Q ss_pred             hhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHH
Q 017461          123 MSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       123 ~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  201 (371)
                      +....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.+  +++.++++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHH
Confidence            34456666555 899999999999999999999999999999998888888888888888888888887  888888889


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcc
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  281 (371)
                      ++.|++.+...+...+++.|..|++.||+++|++.....+|..+|+.+.|.+.+.+|++..+++.+++.++..++.+...
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            99999988777788899999999999999999999999999999999999999999999999988887777767666666


Q ss_pred             cCCCC
Q 017461          282 HSSPA  286 (371)
Q Consensus       282 ~~~~~  286 (371)
                      ++.+.
T Consensus       400 ~~~~~  404 (417)
T PRK10489        400 GELRR  404 (417)
T ss_pred             ccccc
Confidence            65443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.61  E-value=1.2e-14  Score=137.21  Aligned_cols=257  Identities=9%  Similarity=0.019  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC-----CchhHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLGFGVVWW  179 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~  179 (371)
                      .+.++...++..++.........+.+.+++|++.++++.+.+...+...+-.+ +|+++||++     ||+.++++.++.
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            44455556677777633344556667888999999999999999999888555 999999998     788888887776


Q ss_pred             H-HHHHHhhhhhccC-hhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHH---HHHHHHHHHHHHHHHHhHHHHh
Q 017461          180 S-IATALTPVAAKLG-LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSL---ALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       180 ~-i~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      . ++....+..+  + .....+..++.+++.+...++.-+++.|..+ +++....   ++.....++|.++|+.++|.+.
T Consensus       106 ~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       106 SAILYGLLPGKV--SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            3 4444444434  4 3444458899999999999999999999997 5554433   3334445589999999999999


Q ss_pred             cccCchhHHHHHhHHHHHHHHHHhhcccCCCC-CCCCCChHHH--HH-HhhhccCCCCcccchhhhhhcChhHHHHHHHH
Q 017461          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA-EDPQLRPAEK--KL-IVSSCASKEPVKTIPWGLILSKPPVWALIVSH  330 (371)
Q Consensus       255 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  330 (371)
                      +.+||+..|++.+++.++..+ ...+.+|++. ..++..+.+.  .. .........++........+++|.++...+..
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fi  261 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLF-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFI  261 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHH-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            999999999999888777633 3445566531 1111000000  00 00000000000022344567788887765555


Q ss_pred             HH-HHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          331 FC-HNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       331 ~~-~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ++ +.........++ .+..+..|+++.+.|++....+
T Consensus       262 fl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~  298 (468)
T TIGR00788       262 FLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGN  298 (468)
T ss_pred             HHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHH
Confidence            55 222211111111 1223457999999998876544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.61  E-value=1.7e-13  Score=126.14  Aligned_cols=236  Identities=13%  Similarity=0.162  Sum_probs=164.7

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC-CchhHHHHHHHHHHHHHHhhhhhc
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-GKAVLGFGVVWWSIATALTPVAAK  191 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~  191 (371)
                      +++.+.....+.+..+.+.++.|++..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........+ 
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~-   89 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS-   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444445555677788888999999999999999999999999999999999986 56777787787777777777777 


Q ss_pred             cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHh-HHHHhcccC---chhHHHHHh
Q 017461          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF-SPFLIHRFG---WPSVFYSFG  267 (371)
Q Consensus       192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~g---w~~~f~~~~  267 (371)
                       +++.+++..++..+......+...++..+...  +++.-.|-.-..+++|-+++... ++.+....+   ..+.+++.+
T Consensus        90 -~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~  166 (400)
T PF03825_consen   90 -SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA  166 (400)
T ss_pred             -cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence             88989988888888888888888888888874  34444555566666666666443 233333223   234555555


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      ++.++.....+ ..|+.|.++..+...+            +....+..+++|+|+++...+..++.......+.++.+.|
T Consensus       167 ~~~~ll~~~~l-~lp~~~~~~~~~~~~~------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~y  233 (400)
T PF03825_consen  167 ILSLLLAGFAL-FLPKTPPKRSAKESVK------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIY  233 (400)
T ss_pred             HHHHHHHHHHH-hCCCCccccccCCCcc------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444443333 3455442221111100            0112233468999999999899999888999999999999


Q ss_pred             HHHhcCCChhhhhhhhhh
Q 017461          348 YNQVSSFGSKTLSETVQV  365 (371)
Q Consensus       348 l~~~~g~s~~~~~~~~~~  365 (371)
                      +++..|.+....+.+.++
T Consensus       234 l~~~gg~~~~~~g~~~~l  251 (400)
T PF03825_consen  234 LQELGGYSGSTIGILWAL  251 (400)
T ss_pred             HHHcccchhhHHHHHHHH
Confidence            999644777777765543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.61  E-value=3.6e-14  Score=134.58  Aligned_cols=182  Identities=12%  Similarity=0.056  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHH
Q 017461          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (371)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  183 (371)
                      ..+...++..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33444444444444444445566788888999999889999999999999999999999999999999999988888887


Q ss_pred             HHhhhh---hcc------ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          184 ALTPVA---AKL------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       184 ~~~~~~---~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      ++..+.   ...      +...+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776621   110      12222223333332222334666778899999999999999999999999999999999999


Q ss_pred             cccCchhHHHHHhHHHHHHHHHHhhcccCCC
Q 017461          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (371)
Q Consensus       255 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                      +..||++.|++.++++++.+++.+++.+|.+
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            9899999999999988888887777666544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.60  E-value=9.3e-14  Score=128.33  Aligned_cols=165  Identities=15%  Similarity=0.029  Sum_probs=119.7

Q ss_pred             HHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh--HH------HHHHHHHHH
Q 017461          112 AFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV--LG------FGVVWWSIA  182 (371)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--~~------~~~~~~~i~  182 (371)
                      ..++............|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.  ..      ++.++..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL  302 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence            333444444445555665 456789999999999999999999999999999999999961  11      111111111


Q ss_pred             HHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chh
Q 017461          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPS  261 (371)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  261 (371)
                      .+.....+  +.+..+...++.+++.+ ..+...+++.|.+|+++|+++.|+......+|..++|.+.+.+.+..| |++
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~  379 (399)
T TIGR00893       303 MFATNYVN--IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG  379 (399)
T ss_pred             HHHhccch--hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence            12222222  34444444444444544 788999999999999999999999999999999999999999999988 999


Q ss_pred             HHHHHhHHHHHHHHHHhh
Q 017461          262 VFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       262 ~f~~~~~~~~~~~~~~~~  279 (371)
                      .|++.+++.++..++.++
T Consensus       380 ~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       380 ALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999888877766555443

>PRK09669 putative symporter YagG; Provisional

Probab=99.60  E-value=6.3e-14  Score=132.04  Aligned_cols=211  Identities=12%  Similarity=0.054  Sum_probs=148.9

Q ss_pred             hhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh----hCCc-hhHHHHHHHHHHHHHHhhhhhcc----Chh
Q 017461          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGK-AVLGFGVVWWSIATALTPVAAKL----GLP  195 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~~----~~~  195 (371)
                      .+...+.+.+|++...+|.+.++..+..++..|+.|.++||    +||| +.++.+.+..+++.++....+..    ..+
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34555788899999999999999999999999999999998    7875 55556777777777665555411    245


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-------ccCchhHHHHHh
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSVFYSFG  267 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~gw~~~f~~~~  267 (371)
                      ++++..++.+++..+......++.+|+. ++++|++..++...+..+|..+++.+...+..       ..||+..+.+.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            6666777778777777777889999998 45889988888888888887777765544332       347888888888


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017461          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (371)
                      +++++..++.++..+|+...+.+               ++......++.++|||.++.+++..++............+.|
T Consensus       191 ii~~v~~~~~~~~~~e~~~~~~~---------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~  255 (444)
T PRK09669        191 LLGVVLFFCCFFMTKERYTPEVD---------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYY  255 (444)
T ss_pred             HHHHHHHHHHhCCeEEecCCCCc---------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            88777766666555554222110               001113456778999999988877776666665444444444


Q ss_pred             HHH
Q 017461          348 YNQ  350 (371)
Q Consensus       348 l~~  350 (371)
                      .+.
T Consensus       256 ~~~  258 (444)
T PRK09669        256 VNY  258 (444)
T ss_pred             eee
Confidence            443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.60  E-value=5.7e-13  Score=116.96  Aligned_cols=225  Identities=16%  Similarity=0.185  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      .+.+-.++...+++    -++..-.+-+++|++..+++.+........++..++.|.++||+|||+.-++.+++.+++++
T Consensus        39 yl~vY~La~~aDWL----QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl  114 (354)
T PF05631_consen   39 YLLVYLLAMAADWL----QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL  114 (354)
T ss_pred             HHHHHHHHHHHHHh----hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            33334444444443    34444455578999999999999999999999999999999999999999999999999886


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHH-Hhccc----CCcchHHHHHHHH-HHHHHHHHHHHHhHHHHhcccC
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI-LSKWV----PVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~-i~~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .- ..+  +++.++++|++.|++.......-.++ +.|.-    |++..+..++... ..+++-.+++.+++..+.+..|
T Consensus       115 ~k-~~~--~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~  191 (354)
T PF05631_consen  115 TK-HSS--NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG  191 (354)
T ss_pred             HH-hcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence            54 446  89999999999999999988887765 45543    3333344444333 2344445556666667777655


Q ss_pred             c--hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHH
Q 017461          259 W--PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG  336 (371)
Q Consensus       259 w--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  336 (371)
                      .  ..+|....++.++..+++....+|......+..+..+.            ....++.++++|+++.+.++..+.-..
T Consensus       192 ~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~------------~~~a~~~i~~d~ril~LG~~qslFE~s  259 (354)
T PF05631_consen  192 FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGS------------FREAWRAILSDPRILLLGLIQSLFEGS  259 (354)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHH------------HHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            4  78899888887777777776666655432222111111            023456678889999888888887777


Q ss_pred             HHHHH-HhhHHHH
Q 017461          337 TFILL-TWMPTYY  348 (371)
Q Consensus       337 ~~~~~-~~~~~~l  348 (371)
                      .+.+. .|.|.+-
T Consensus       260 my~FVflWtPaL~  272 (354)
T PF05631_consen  260 MYLFVFLWTPALD  272 (354)
T ss_pred             HHHheeeeeceec
Confidence            76665 4455543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.60  E-value=3.4e-14  Score=135.88  Aligned_cols=150  Identities=12%  Similarity=0.135  Sum_probs=119.4

Q ss_pred             hhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHH
Q 017461          123 MSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       123 ~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  201 (371)
                      ....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+++.++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445677765 5899999999999999999999999999999999999999998887777666554443321444454555


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHH
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~  272 (371)
                      ++.++...+..+....++.|.+|+++|++++++......+|..+||+++|.+.+..||+..++..++...+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55554434445677788999999999999999999999999999999999999999999888766554433

>PRK03699 putative transporter; Provisional

Probab=99.59  E-value=9.9e-14  Score=128.68  Aligned_cols=158  Identities=11%  Similarity=0.120  Sum_probs=131.3

Q ss_pred             hhhhhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHH
Q 017461          119 DRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (371)
Q Consensus       119 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l  197 (371)
                      ....+....|.+. +++|++..+.+++.+.+.++..++.++.|+++||+|+|+.+..+..+.++..++....+  +.+.+
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~  297 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--DPSHL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--CchHH
Confidence            3344455666654 67899999999999999999999999999999999999999988888777777776677  77777


Q ss_pred             HHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHH
Q 017461          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      .+..++.|++.+..++...++..+..+ ++++...++...+..+|..++|.+.|.+.+..||+..+++.+++.++.+++.
T Consensus       298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        298 LYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            778888999888888888888888775 5567888888889999999999999999999999999998888777765544


Q ss_pred             hh
Q 017461          278 LS  279 (371)
Q Consensus       278 ~~  279 (371)
                      +.
T Consensus       377 ~~  378 (394)
T PRK03699        377 IL  378 (394)
T ss_pred             HH
Confidence            43

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.58  E-value=2.8e-13  Score=125.52  Aligned_cols=167  Identities=13%  Similarity=0.006  Sum_probs=131.7

Q ss_pred             hhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHH
Q 017461          118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l  197 (371)
                      ..........|.+.+++|.+..+.++..+.+.++..++.++.|++.||+|||+.+.++..+.+++.++....+. +...+
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-QLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-hHHHH
Confidence            33444555667766678999999999999999999999999999999999999999988888777766554331 22222


Q ss_pred             HHHHHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHH
Q 017461          198 LVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~  275 (371)
                        .-++.|++.+...+.......+.++ ++++++..|+.+....++..++|.+.|++.+..| |...|.+.++.+++..+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              2356788888887877777777775 5789999999999999999999999999999876 78888888887777777


Q ss_pred             HHhhcccCCCCC
Q 017461          276 VWLSKAHSSPAE  287 (371)
Q Consensus       276 ~~~~~~~~~~~~  287 (371)
                      +.+.+.||++.+
T Consensus       376 ~~~~~~~~~~~~  387 (393)
T PRK09705        376 ITLRFAPARFPQ  387 (393)
T ss_pred             HHHHhccccccc
Confidence            777776765543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.58  E-value=2.8e-13  Score=125.14  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=125.0

Q ss_pred             hhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHH
Q 017461          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFM  204 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  204 (371)
                      ..+|.+.++.|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+...  .  . +.+....++.
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~-~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--Q-AAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--h-HHHHHHHHHH
Confidence            446777777899999999999999999999999999999999999999988888777665443  2  2 2344567778


Q ss_pred             HhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhh
Q 017461          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      |++.+...+...+.+.|..|+++++.+.+.+....++|.++||.++|.+.+++||++.|++.+++.++..++.++
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            887777789999999999988888888888888999999999999999999999999999988877766555444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.57  E-value=7.5e-16  Score=128.94  Aligned_cols=257  Identities=17%  Similarity=0.181  Sum_probs=187.4

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVV  177 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~  177 (371)
                      ..+|...+..+++..|-.++..-..+.+..++..+.+++.++..++.++|..-..+..+++|++.|| +|-|...++-+.
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            3456677777777777777777777888888999999999999999999999999999999999996 788888888788


Q ss_pred             HHHHHHHHhhh---hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          178 WWSIATALTPV---AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       178 ~~~i~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      +..+|.++++.   .+  .+|.++.+|++.|+|.-...++.+.++.-||..|+.+.++|+......+|..+--.+.+++.
T Consensus       119 fv~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly  196 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY  196 (459)
T ss_pred             HHHHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence            88888877664   45  79999999999999988888888999999999999999999999999999988888888887


Q ss_pred             cccCc------hhH---HHHHhHH-HHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhcc--CCCCcccchhhhhhcChh
Q 017461          255 HRFGW------PSV---FYSFGSL-GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCA--SKEPVKTIPWGLILSKPP  322 (371)
Q Consensus       255 ~~~gw------~~~---f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~  322 (371)
                      +..+-      ...   ....+.. +...+++....--.+.+         .+.+.+.++  ..+..+..+...  -.|.
T Consensus       197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~r---------Aerilh~e~g~~Ge~pkLtdv~~--f~pp  265 (459)
T KOG4686|consen  197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDR---------AERILHLEEGFLGEEPKLTDVNT--FYPP  265 (459)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---------HHHHHhhhcCcccCCcccccccc--cCcc
Confidence            75321      111   1111111 11111221111100000         000111100  011111122111  1488


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhheee
Q 017461          323 VWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCTT  368 (371)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~  368 (371)
                      +|.+.+.+++++...+-+.+..|.++++.+|+|+.+++.+.+.+-.
T Consensus       266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~  311 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYG  311 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhh
Confidence            9999999999999999999999999999999999999998776543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.57  E-value=8.2e-14  Score=129.45  Aligned_cols=140  Identities=16%  Similarity=0.180  Sum_probs=116.5

Q ss_pred             hhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH-HhhhhhccChhHHHHHH
Q 017461          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       124 ~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~~r  201 (371)
                      ....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++..+ +.....  +.+.+.++.
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  335 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA--NVAVLGLGL  335 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC--chHHHHHHH
Confidence            334444 5667899999999999999999999999999999999999999888776644333 333334  667777777


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHH
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYS  265 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~  265 (371)
                      ++.|++.+...+....++.|.+|+++|++++|+......+|..++|+++|.+.+..| |+..+..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            888877777778888999999999999999999999999999999999999999988 8776665

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.57  E-value=4.4e-14  Score=130.56  Aligned_cols=159  Identities=13%  Similarity=0.134  Sum_probs=122.4

Q ss_pred             HHHHHhhhhhhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHH--HHhhhh
Q 017461          113 FLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT--ALTPVA  189 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~~  189 (371)
                      .+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++..+..+..  ++..+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL  307 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444555566654 7789999999999999999999999999999999999998876555444333  222232


Q ss_pred             hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHH-HHHHHHHHHHHHHhHHHHhcccC-chhHHHHHh
Q 017461          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFG  267 (371)
Q Consensus       190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~  267 (371)
                      ...+.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. ..+..+|..++|.++|.+.++.| |++.++..+
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            1116677778889999998888899999999999999999999984 56667899999999999999888 888777665


Q ss_pred             HHHH
Q 017461          268 SLGT  271 (371)
Q Consensus       268 ~~~~  271 (371)
                      +..+
T Consensus       388 ~~~l  391 (394)
T TIGR00883       388 ALAL  391 (394)
T ss_pred             HHHH
Confidence            5433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.57  E-value=1.2e-13  Score=130.50  Aligned_cols=162  Identities=12%  Similarity=0.050  Sum_probs=114.2

Q ss_pred             hhhhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--CCchhH-HHHHHHHHHHHHHhhhhhccChh
Q 017461          120 RVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIATALTPVAAKLGLP  195 (371)
Q Consensus       120 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~  195 (371)
                      .+.....+|.+. +++|.+..+.+++..++.++..++.++.|+++||+  |||... ++...+..++.++..+....+.+
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPT  348 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence            344555677754 55789989999999999999999999999999999  555432 22333333333333332211444


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHH-HHHHhHHHHhcccCchhHHHHHhHHHHHHH
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV-TGLAFSPFLIHRFGWPSVFYSFGSLGTVWF  274 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~  274 (371)
                      .++++.++.|.+..........++.|.+|++.||++.|+.+....+|.. ++|.+.|.+.+..||+..|++.++++++.+
T Consensus       349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            5555555566544333334445678999999999999999988888765 479999999999999999998888777766


Q ss_pred             HHHhhcc
Q 017461          275 TVWLSKA  281 (371)
Q Consensus       275 ~~~~~~~  281 (371)
                      +....+.
T Consensus       429 ~~~~~~~  435 (452)
T PRK11273        429 ILLIVVM  435 (452)
T ss_pred             HHHHHHh
Confidence            6555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.57  E-value=1.8e-13  Score=128.62  Aligned_cols=168  Identities=10%  Similarity=-0.017  Sum_probs=116.2

Q ss_pred             HHhhhhhhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--CCchhH-HHHHHHHHHHHHHhhhhhc
Q 017461          116 CNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIATALTPVAAK  191 (371)
Q Consensus       116 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~~~~  191 (371)
                      .......+....|.+. +++|++..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+..+.......
T Consensus       255 ~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK11663        255 VYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF  334 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc
Confidence            3333344455566654 67899999999999999999999999999999999  333332 2211111111111111121


Q ss_pred             cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHH
Q 017461          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT  271 (371)
Q Consensus       192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~  271 (371)
                      .+...+.+..++.|++...........+.|.+|+++|++++|+.+....+|..++|.+.|.+.+..||+..|++.+++.+
T Consensus       335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~  414 (434)
T PRK11663        335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAG  414 (434)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHH
Confidence            13434444445555543322333455678999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhcccC
Q 017461          272 VWFTVWLSKAHS  283 (371)
Q Consensus       272 ~~~~~~~~~~~~  283 (371)
                      +..+..++..++
T Consensus       415 ~~~~~~~~~~~~  426 (434)
T PRK11663        415 ISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHhh
Confidence            777766655544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=6.5e-14  Score=124.35  Aligned_cols=179  Identities=13%  Similarity=0.059  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--CCchh-HHHHHHHH
Q 017461          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAV-LGFGVVWW  179 (371)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~-~~~~~~~~  179 (371)
                      ..++.++++.+..+..++.+.-..|. +.|..|.+..+.++..+.+-++...+.+++|+++||+  |||.. -++.+++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            35667777788888888888877776 6777899999999999999999999999999999996  66654 44566666


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhcccC
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g  258 (371)
                      .++.+...++++.|++...++-++.|+..-+..-+......|..|++--|.+.|+.+.+..+ |.+.+....+.+.|.+|
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g  411 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG  411 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence            66777777777556789999999999988877777788889999999999999999999998 99999999999999999


Q ss_pred             chhHHHHHhHHHHHHHHHHhhccc
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAH  282 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~  282 (371)
                      |...|.+..+.++++.++.+....
T Consensus       412 W~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         412 WDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHh
Confidence            999999888877777666555444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.56  E-value=2.8e-14  Score=134.66  Aligned_cols=159  Identities=14%  Similarity=0.158  Sum_probs=128.7

Q ss_pred             HHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--CCchhHHH--HHHHHHHHHHHhhhhhc
Q 017461          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGF--GVVWWSIATALTPVAAK  191 (371)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~  191 (371)
                      ...........++.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.+++.+.+ 
T Consensus       253 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-  331 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG-  331 (455)
T ss_pred             HHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            333334444556777778899999999999999999999999999999984  34433333  3344445555666677 


Q ss_pred             cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc-CchhHHHHHhHHH
Q 017461          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLG  270 (371)
Q Consensus       192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~~~~~  270 (371)
                       +++.+++.+++.|++.+...+...+++.|.+|++++++.+|++.....+|.++||.++|.+.+.. +|++.|++.+++.
T Consensus       332 -~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~  410 (455)
T TIGR00892       332 -DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV  410 (455)
T ss_pred             -hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence             88889999999999999998999999999999999999999999999999999999999999877 5999999988876


Q ss_pred             HHHHHH
Q 017461          271 TVWFTV  276 (371)
Q Consensus       271 ~~~~~~  276 (371)
                      ++..+.
T Consensus       411 li~~~~  416 (455)
T TIGR00892       411 VSAGLF  416 (455)
T ss_pred             HHHHHH
Confidence            665443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.55  E-value=9.5e-13  Score=125.36  Aligned_cols=167  Identities=13%  Similarity=0.036  Sum_probs=127.5

Q ss_pred             hhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccC-h-hHH
Q 017461          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG-L-PFL  197 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~-~-~~l  197 (371)
                      ........|.+.+++|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++++.....+ . ...
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            33444556888888998888788888888889999999999999999999999999999998887776542111 1 123


Q ss_pred             HHHHHHHHhhhhc-hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH------hcccCchhHHHHHhHHH
Q 017461          198 LVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL------IHRFGWPSVFYSFGSLG  270 (371)
Q Consensus       198 ~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~gw~~~f~~~~~~~  270 (371)
                      +++.++.+++.+. ..+....+++|.+|+++|+.++|+......+|.++++.+.+.+      .+.++|++.|++.++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            3334444444443 2367789999999999999999999999999998886665544      45788999999998888


Q ss_pred             HHHHHHHhhcccCCCC
Q 017461          271 TVWFTVWLSKAHSSPA  286 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~  286 (371)
                      ++.+++.+++.||++.
T Consensus       447 ~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        447 VLAALFMWKFVPETKG  462 (479)
T ss_pred             HHHHHHHHhccccCCC
Confidence            8887777777666543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=8.5e-13  Score=118.50  Aligned_cols=172  Identities=15%  Similarity=0.167  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      ......+.....+..+..+-|.+++..|++.+.++++..+|.++..++.++.|++.|| +.|+.+....++.++..+...
T Consensus       216 ~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~  294 (394)
T COG2814         216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT  294 (394)
T ss_pred             HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHH
Confidence            3333344444455566777888999999999999999999999999999999999999 999999998888877777766


Q ss_pred             hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHh
Q 017461          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (371)
Q Consensus       188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  267 (371)
                      +..+ +.+..++.-++.|++.+.........+++ ..++.+..+.+++...+++|..+|..+||.+.+++|+....++.+
T Consensus       295 ~~~~-~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a  372 (394)
T COG2814         295 FTGA-SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGA  372 (394)
T ss_pred             Hhcc-hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            6652 56677777777788777666666666666 337899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 017461          268 SLGTVWFTVWLSKAH  282 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~  282 (371)
                      ++.++.+++.+...+
T Consensus       373 ~l~~~a~~~~~~~~~  387 (394)
T COG2814         373 ALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            988887777665444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.54  E-value=2.9e-13  Score=128.49  Aligned_cols=240  Identities=13%  Similarity=0.048  Sum_probs=158.8

Q ss_pred             HHHHHHhhhhhhhhh-hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh----hhCC-chhHHHHHHHHHHHHHH
Q 017461          112 AFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGG-KAVLGFGVVWWSIATAL  185 (371)
Q Consensus       112 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~  185 (371)
                      +.+...+....+... ...+.+.+|++...+|.+..+..+.-++..|+.|.++|    |+|| |+.++++.+.++++.++
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l   93 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL   93 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence            333334444445544 44467778999999999999999999999999999999    6698 56666788887877666


Q ss_pred             hhhhhcc--C--hhHHHHHHHHHHhhhhchhhhHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-----
Q 017461          186 TPVAAKL--G--LPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----  255 (371)
Q Consensus       186 ~~~~~~~--~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  255 (371)
                      +...++.  +  +..+++..++.+++.........+++.|.. ++++|.+..++...+.++|..+++.+...+.+     
T Consensus        94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~  173 (473)
T PRK10429         94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG  173 (473)
T ss_pred             HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6443311  1  345666677778888888888999999998 58899999988777777776666555443322     


Q ss_pred             --ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHH
Q 017461          256 --RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH  333 (371)
Q Consensus       256 --~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (371)
                        ..||+...++.+++.++..++.++..+|.+........+          +++......++.+++||.++.+++..++.
T Consensus       174 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~  243 (473)
T PRK10429        174 DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE----------GSHLTLKDIVALIYKNDQLSCLLGMALAY  243 (473)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc----------ccCCCHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              235677777777766666666655556543211100000          00111133455677899998888888888


Q ss_pred             HHHHHHHHHhhHHHHHHhcCCChhhhhhh
Q 017461          334 NWGTFILLTWMPTYYNQVSSFGSKTLSET  362 (371)
Q Consensus       334 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~  362 (371)
                      ....+....+.+.|++...+ +....+.+
T Consensus       244 ~~~~~~~~~~~~y~~~y~~~-~~~~~~~~  271 (473)
T PRK10429        244 NIASNIINGFAIYYFTYVIG-DADLFPYY  271 (473)
T ss_pred             HHHHHHHhhheeeEEEEECC-CHHHHHHH
Confidence            77777777777766655433 34444433

>TIGR00897 2A0118 polyol permease family

Probab=99.53  E-value=9.1e-13  Score=122.56  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=125.3

Q ss_pred             HHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHH-HHHHHHHHHHHHhhhhh---
Q 017461          115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAA---  190 (371)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~---  190 (371)
                      +............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.+.+   
T Consensus       233 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  312 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF  312 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33334444556678877889999999999999999999999999999999999988764 33333444333332211   


Q ss_pred             ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHH
Q 017461          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (371)
Q Consensus       191 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~  270 (371)
                      ..+.+.+++..++.|++.+...+ ....+.|.. +++|+++.|+.+....+|..++|.+++.+.+..||..+|++.+++.
T Consensus       313 ~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~  390 (402)
T TIGR00897       313 GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALY  390 (402)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            11567777888899988877544 455667765 5689999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHhh
Q 017461          271 TVWFTVWLS  279 (371)
Q Consensus       271 ~~~~~~~~~  279 (371)
                      ++..++.++
T Consensus       391 ~i~~~~~~~  399 (402)
T TIGR00897       391 VVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHH
Confidence            776665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.53  E-value=9.4e-13  Score=119.40  Aligned_cols=228  Identities=10%  Similarity=0.039  Sum_probs=140.6

Q ss_pred             HHHHHhhhhhhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHH--HHHHHHH-HHhhh
Q 017461          113 FLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV--VWWSIAT-ALTPV  188 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~--~~~~i~~-~~~~~  188 (371)
                      .+...+...+..+..+... ++.|++.+++|.+.++..+...+.+|+.|.++||+|.||-++...  ++...+. +...+
T Consensus        16 ~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~   95 (412)
T PF01306_consen   16 YFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVF   95 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444555666767655 458999999999999999999999999999999999776554333  2222222 33233


Q ss_pred             hhc--cChh-HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHH
Q 017461          189 AAK--LGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       189 ~~~--~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      .+-  .|.+ ..+++.+..|+......++.-+++.++.  ++.+.-.|-.-..+.+|.+++..++|.+.+ .+-...||+
T Consensus        96 ~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi  172 (412)
T PF01306_consen   96 GPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWI  172 (412)
T ss_dssp             HHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHH
Confidence            220  1332 3333344445555555566666665554  455666777888999999999999999987 345677887


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      ..+.+++..++.+...++.+.+....+..+.        ++++.......+++|+|++|.+.+........+..+-..++
T Consensus       173 ~s~~~~il~lll~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~  244 (412)
T PF01306_consen  173 ASAAAIILLLLLLLLKPDVPPQAEVADALGA--------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFP  244 (412)
T ss_dssp             HHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcCchhhhhhccccc--------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666666655555555443332211111000        01111233456789999999988888887788888877788


Q ss_pred             HHHHHh
Q 017461          346 TYYNQV  351 (371)
Q Consensus       346 ~~l~~~  351 (371)
                      .|+...
T Consensus       245 ~y~~~~  250 (412)
T PF01306_consen  245 IYFASF  250 (412)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888763

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.52  E-value=1.1e-12  Score=121.17  Aligned_cols=147  Identities=16%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      .....|.+.++.|.+..+.|++.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.++.+  +.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHH
Confidence            33444555577999999999999999999999999999999999999999999999999888888888  8999999999


Q ss_pred             HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHH-HHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHH
Q 017461          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  273 (371)
                      +.|++.+...+....++.+. ++++++++.+++. ....+|..+||.++|.+.+.+|+ ..|+..+++.++.
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            99999998888888888887 5667788898876 55678889999999999999887 4677666665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.52  E-value=1.7e-13  Score=128.49  Aligned_cols=219  Identities=18%  Similarity=0.222  Sum_probs=170.0

Q ss_pred             hhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh----hhCCchh-HHHHHHHHHHHHHHhhhh-h-cc----C
Q 017461          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAV-LGFGVVWWSIATALTPVA-A-KL----G  193 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~i~~~~~~~~-~-~~----~  193 (371)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||+. +++|.++.+++.+++... + +.    .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4455677888999999999999999999999999999999    8996655 557888888888777766 3 11    2


Q ss_pred             hhHHHHHHHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc-------CchhHHHH
Q 017461          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYS  265 (371)
Q Consensus       194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------gw~~~f~~  265 (371)
                      ..++++..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            3446777788899999999999999999997 578999999988888888876666666555321       69999999


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      .+++.++..++..+..+|.+.+..+.             +++......++.+++||.++.+.+..++...+........+
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~-------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQ-------------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccccc-------------ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence            99998888888888888721111110             11112244677899999999999999999888888888888


Q ss_pred             HHHHHhcCCCh
Q 017461          346 TYYNQVSSFGS  356 (371)
Q Consensus       346 ~~l~~~~g~s~  356 (371)
                      .|.+...|.+.
T Consensus       250 y~~~~vl~~~~  260 (428)
T PF13347_consen  250 YYFTYVLGNEG  260 (428)
T ss_pred             HHHHHHhcCch
Confidence            88888777763

>PRK09952 shikimate transporter; Provisional

Probab=99.51  E-value=1.7e-12  Score=122.11  Aligned_cols=157  Identities=13%  Similarity=0.018  Sum_probs=116.0

Q ss_pred             hhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh--hccChhHHHH
Q 017461          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGLPFLLV  199 (371)
Q Consensus       123 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~l~~  199 (371)
                      .....|. +.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.+...  ...+.+.+++
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            3444444 567788888776666667777788899999999999999999988877666554433221  1113445555


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHH-HHHHHHHHHHHHhHHHHhccc--CchhHHHHHhHHHHHHHHH
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTV  276 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~  276 (371)
                      ..++.|++.+...+...++++|.+|.+.|+.+.++.. .+..+|+.++|.+.+.+.+..  +|...+...+++.++..+.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            6677788888888888999999999999999988854 445589999999999998743  4888888777776666555


Q ss_pred             Hhh
Q 017461          277 WLS  279 (371)
Q Consensus       277 ~~~  279 (371)
                      .+.
T Consensus       429 ~~~  431 (438)
T PRK09952        429 ALL  431 (438)
T ss_pred             HHH
Confidence            543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.51  E-value=1.1e-12  Score=122.99  Aligned_cols=141  Identities=14%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      +...+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.+++.+........+..  .+.-+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  327 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYL--LLGAC  327 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHH--HHHHH
Confidence            4455677767789899999999999999999999999999999999999998888777766555443311222  22223


Q ss_pred             HHHh--hhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHH
Q 017461          203 FMGI--GEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       203 l~G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      +.|+  +..+..+..+.++.|.+|+++||+++|+......+|..++|.+.+.+.+..|+....++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            3333  22333456677889999999999999999999999999999999999998887654333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.49  E-value=1.4e-12  Score=121.12  Aligned_cols=142  Identities=8%  Similarity=0.064  Sum_probs=122.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhh
Q 017461          135 NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (371)
Q Consensus       135 ~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  214 (371)
                      +.+....|++.++..+...++.++.|++.||+|+|+.+.++.++.+++.++...++  +.+.+++.+++.|++.+.....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999999998888877887  8888899999999998777667


Q ss_pred             HHHHHhcccCCcchHHHHHH-HHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          215 MNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       215 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                      ...++.+..+++.++...+. ++....+|..+++.++|++.+..||+.+|.+.+++.++..+...
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888877666 67889999999999999999999999999998888776655443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.48  E-value=2.8e-12  Score=121.70  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=138.9

Q ss_pred             hhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHH
Q 017461          122 NMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (371)
Q Consensus       122 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  200 (371)
                      .+..++|.+. +.+|.+...+|++.+.+.+|..+++++.+++.+|+++++.+..+.++++++.+..++++  +.+..++.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--SFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--HHHHHHHH
Confidence            3445577765 56899999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                      .++.|++.....+...+.+.+..|++.||++++++.+....+..+|.++.|.+.+.+|.+..+.+.++..++..++.+
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888899999999999999999999999999999999999999999999999998887765555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.48  E-value=4.6e-12  Score=118.93  Aligned_cols=173  Identities=14%  Similarity=0.099  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHH-hhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCc--hhHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCN-MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVWWSIA  182 (371)
Q Consensus       106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~  182 (371)
                      +...++++++.. ....++........+++|++..+...+..+..+..+++++++|++.||+|.|  ++++++++++.+.
T Consensus       283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i  362 (477)
T PF11700_consen  283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII  362 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            333344444332 2234444545556779999999999999999999999999999999999999  8888888887665


Q ss_pred             HHHhhh--------hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          183 TALTPV--------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       183 ~~~~~~--------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      .+...+        .+  +.|.+.+.-++.|+..|..++...++.++..|+++.+..+|++....-....+||++.|.+.
T Consensus       363 ~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~  440 (477)
T PF11700_consen  363 PLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT  440 (477)
T ss_pred             HHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544        45  78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC-chhHHHHHhHHHHHHHHHHhhc
Q 017461          255 HRFG-WPSVFYSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       255 ~~~g-w~~~f~~~~~~~~~~~~~~~~~  280 (371)
                      +..| -|+.++...++.++.+++.++.
T Consensus       441 ~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  441 DATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            9776 7888888777777666665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=99.47  E-value=4e-12  Score=120.00  Aligned_cols=235  Identities=12%  Similarity=0.048  Sum_probs=145.9

Q ss_pred             HHHHHHhhhhhhhh-hhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh----CCchhH-HHHHHHHHHHHHH
Q 017461          112 AFLLCNMDRVNMSI-AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV----GGKAVL-GFGVVWWSIATAL  185 (371)
Q Consensus       112 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~  185 (371)
                      +.+..........+ +..++.+.+|++..++|.+.++..+..++..++.|+++||.    |||+.. .++.+...+..++
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~   95 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL   95 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence            33333333333333 34567778899999999999999999999999999999996    767654 5555555544444


Q ss_pred             h-hhh----hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHH-----HHHHHHHHHhHHHHh
Q 017461          186 T-PVA----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGM-----YLGSVTGLAFSPFLI  254 (371)
Q Consensus       186 ~-~~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~-----~~g~~~g~~~~~~l~  254 (371)
                      . ...    .....+.+++..++.+++.+...+...++..+... +++|.+..++-..+.     .++..++|.+++...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g  175 (448)
T PRK09848         96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP  175 (448)
T ss_pred             HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3 221    10123345555677888888888777777777664 467888766654433     345555666555432


Q ss_pred             ccc--CchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHH
Q 017461          255 HRF--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC  332 (371)
Q Consensus       255 ~~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  332 (371)
                      ...  +|.....+.++++++..++.....+|+...+.+                ++.....++.++|||.++...+..++
T Consensus       176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~----------------~~~~~~~~~~l~~n~~f~~~~~~~~~  239 (448)
T PRK09848        176 EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA----------------QPSLKISLQTLKRNRPLFMLCIGALC  239 (448)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc----------------CCCHHHHHHHHhCCchHHHHHHHHHH
Confidence            111  122122233333333333333334443221111                01112346779999999999988888


Q ss_pred             HHHHHHHHHHhhHHHHHHhcCCChhhhhhh
Q 017461          333 HNWGTFILLTWMPTYYNQVSSFGSKTLSET  362 (371)
Q Consensus       333 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~  362 (371)
                      ...++.......|.|+++.+|.++...++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  269 (448)
T PRK09848        240 VLISTFAVSASSLFYVRYVLNDTGLFTVLV  269 (448)
T ss_pred             HHHHHHHHhhhheeeEeeecCChHHHHHHH
Confidence            888888888888888888888877655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.46  E-value=6e-12  Score=118.28  Aligned_cols=145  Identities=19%  Similarity=0.150  Sum_probs=105.9

Q ss_pred             Hhhhhhhhhhhhhhhh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH-Hh-hhhhccC
Q 017461          117 NMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LT-PVAAKLG  193 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~-~~~~~~~  193 (371)
                      ......+....|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||+++.++.++.++..+ .. ......+
T Consensus       251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PRK15075        251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS  330 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3334445566777554 5899999999999999999999999999999999999998876555433222 11 1112114


Q ss_pred             hhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHH-HHHHHHHHHHHhHHHHhcccCchh
Q 017461          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWPS  261 (371)
Q Consensus       194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~gw~~  261 (371)
                      +..+.+..++.|++.+...+....++.|.+|++.|+.+.++... +..++..++|.+.+.+.+..|+++
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~  399 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA  399 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence            44455556667777777667777889999999999999998644 444567889999999999888653

>TIGR00895 2A0115 benzoate transport

Probab=99.46  E-value=3.1e-12  Score=118.49  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=112.5

Q ss_pred             HHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccC
Q 017461          114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG  193 (371)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  193 (371)
                      ++............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+....+......++.....  +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  337 (398)
T TIGR00895       260 FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF--S  337 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh--C
Confidence            33334444455667788889999999999999999999999999999999999999544444433333333333355  7


Q ss_pred             hhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      .+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus       338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            778888899999999999999999999999999999999999999999999999999875

>PRK10054 putative transporter; Provisional

Probab=99.45  E-value=2.5e-12  Score=119.26  Aligned_cols=154  Identities=12%  Similarity=0.087  Sum_probs=127.8

Q ss_pred             hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh-hccChhHHHHHHHHHHhhhhc
Q 017461          132 AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA-AKLGLPFLLVVRVFMGIGEGV  210 (371)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~  210 (371)
                      ++.+.+....+++...+.+.....+++.|++.||+++|+.+.+++++.+++.+...++ +  +.+.+++..++.|+|.+.
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~  314 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN--SLLLWGMSAAVFTVGEII  314 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHH
Confidence            4556677778888888888888888999999999999999999998888888777664 4  677778889999999988


Q ss_pred             hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCCC
Q 017461          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (371)
Q Consensus       211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      ..+....++.+..|++.|+.+.+..+ ...+|..+||.++|.+.++.|....|++.++...+..++.+...+|+|..+
T Consensus       315 ~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (395)
T PRK10054        315 YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARPWGQ  391 (395)
T ss_pred             HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCcccC
Confidence            88888899999999999999988765 566899999999999999999988998887777666666665555555543

>PRK10504 putative transporter; Provisional

Probab=99.45  E-value=4.4e-12  Score=120.51  Aligned_cols=140  Identities=17%  Similarity=0.137  Sum_probs=116.3

Q ss_pred             hhhhhhhhhhhhh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhc-cChhHH
Q 017461          120 RVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK-LGLPFL  197 (371)
Q Consensus       120 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~l  197 (371)
                      ........|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++.++.++.+++.++..+... .+.+.+
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (471)
T PRK10504        277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLL  356 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            3445556676555 58989999999999999999999999999999999999999999888888776665421 144445


Q ss_pred             HHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      .+..++.|++.+...+....++.+..|++.++.+.++.+....+|..+|+.+++.+.+..|+
T Consensus       357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            56678889998888888899999999999999999999999999999999999998876655

>PRK11462 putative transporter; Provisional

Probab=99.45  E-value=3.2e-11  Score=113.88  Aligned_cols=222  Identities=10%  Similarity=0.016  Sum_probs=154.5

Q ss_pred             Hhhhhhhhhh-hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh----hCCchh-HHHHHHHHHHHHHHhhhhh
Q 017461          117 NMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAV-LGFGVVWWSIATALTPVAA  190 (371)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~  190 (371)
                      ++....++.. ...+.+..|+++..+|.+..+.-+.-++.-|+.|.++||    +|||+. ++++.+.++++.+++...+
T Consensus        22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence            3333444433 444677889999999999999999999999999999996    787655 5567777887777665555


Q ss_pred             ccC----hhHHHHHHHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc-------cC
Q 017461          191 KLG----LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------FG  258 (371)
Q Consensus       191 ~~~----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~g  258 (371)
                      +.+    ...+++..++..++..+....-.++.+|..+ +++|.+..++...+..+|..+++.+...+...       .|
T Consensus       102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g  181 (460)
T PRK11462        102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG  181 (460)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence            211    4456667777888888888888999999987 78999999999999999888887776554443       25


Q ss_pred             chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHH
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (371)
                      |+....+.+++.+++.++.+...+|.+..+.++.                .....++.+++||.++.+....++......
T Consensus       182 ~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~----------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~  245 (460)
T PRK11462        182 FQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT----------------SMREDLRDIWQNDQWRIVGLLTIFNILAVC  245 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcceeccCCCccCC----------------CHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            7777777777766666555555555432211100                012345678889988877766666666655


Q ss_pred             HHHHhhHHHHHHhcCC
Q 017461          339 ILLTWMPTYYNQVSSF  354 (371)
Q Consensus       339 ~~~~~~~~~l~~~~g~  354 (371)
                      ........|.....|.
T Consensus       246 ~~~~~~~y~~~y~~g~  261 (460)
T PRK11462        246 VRGGAMMYYVTWILGT  261 (460)
T ss_pred             HHHhHhhhhhhhhcCC
Confidence            5555555555544443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.44  E-value=4.7e-12  Score=121.22  Aligned_cols=167  Identities=10%  Similarity=-0.005  Sum_probs=112.6

Q ss_pred             hhhhhhhhhhhhhhhcCCCcchHHH------------HHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          119 DRVNMSIAILPMSAEFNWNPATVGL------------IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      ..+......|.+.++.|.+....+.            ...+..++..++.++.++++||+|||++++++.++.+++.++.
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            3334445577777788876543211            2233445666788999999999999999998888877777665


Q ss_pred             hhhhcc--ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------
Q 017461          187 PVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------  256 (371)
Q Consensus       187 ~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  256 (371)
                      ++....  +...+...-++..++..+..+....+.+|.+|.+.|+++.|+......+|.+++|.+.+.+.+.        
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  462 (502)
T TIGR00887       383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP  462 (502)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence            543210  1111221112222222233456677889999999999999999999999999999999998873        


Q ss_pred             --cCchhHHHHHhHHHHHHHHHHhhcccCCCC
Q 017461          257 --FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       257 --~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                        .++...|++.++++++..+.. ++.||++.
T Consensus       463 ~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       463 TGIWMGHVLEIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             ccccchHHHHHHHHHHHHHHHHh-eEeccCCC
Confidence              345667888887777665544 56676544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.44  E-value=1.9e-11  Score=116.42  Aligned_cols=153  Identities=14%  Similarity=0.147  Sum_probs=120.8

Q ss_pred             hhhhhhhcCCCcchHHHHHH-HHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh---hhhhccChhHHHHHHH
Q 017461          127 ILPMSAEFNWNPATVGLIQS-SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV  202 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r~  202 (371)
                      .|.+.+++|.+..+.+++.. ...++.+++.+++|+++||+|+|+.+.++.++.+++.+++   +... .+.+.+.+.-+
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~-~~~~~l~~~~~  324 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD-KNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            44456779999999999974 6668999999999999999999988877666555544332   2221 15555555666


Q ss_pred             HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhc
Q 017461          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  280 (371)
                      +..++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..||+..|.+.++++++..++.++.
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            766666666677788888999999999999999999999999999999999999999999999888888776666554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.43  E-value=2.7e-12  Score=120.83  Aligned_cols=164  Identities=12%  Similarity=0.026  Sum_probs=113.8

Q ss_pred             hhhhhhhhhh-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH---HHHHHhhhhhccChhHH
Q 017461          122 NMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALTPVAAKLGLPFL  197 (371)
Q Consensus       122 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~~~~~~~~~l  197 (371)
                      ......|.+. +.+|.+..+.++....+.++..++.++.|+++||+|+++....+..+..   ++.+++...+..+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            3444566654 4579999999999999999999999999999999975443233332222   22222222211134444


Q ss_pred             HHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHH-HHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHH
Q 017461          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG-SVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (371)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~  276 (371)
                      .+..++.|++...........+.|.+|+++|+.+.|+.+....+| .+++|.+.|.+.+..||...|++.+++.++..+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            444555565433322333456789999999999999998887776 5789999999999999999999888887777777


Q ss_pred             HhhcccCCC
Q 017461          277 WLSKAHSSP  285 (371)
Q Consensus       277 ~~~~~~~~~  285 (371)
                      .++..+|.+
T Consensus       429 ~~~~~~~~~  437 (438)
T TIGR00712       429 LIVVMIGEK  437 (438)
T ss_pred             HHHHHhhcc
Confidence            777666543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.43  E-value=1.4e-11  Score=110.05  Aligned_cols=157  Identities=9%  Similarity=0.072  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSA---EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      +..+..++.......+....+.+.+   .+|+++.+.++..+.+..+..++.++.+++.||+|+|+++.++.++.+++.+
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3444444444344445555555443   3689999999999999999999999999999999999999999888888877


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      +....+  +.+. ..+-++.|++.+..+|...+...+.+|+ +.+.+.++. ....+|.+++|++.|.+.|..|.+..|+
T Consensus       224 l~~~~~--~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       224 GAALTH--GYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHcC--CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            666655  4333 3456688999999999999999998854 456677775 5677899999999999999999988887


Q ss_pred             HHhHH
Q 017461          265 SFGSL  269 (371)
Q Consensus       265 ~~~~~  269 (371)
                      +..+.
T Consensus       299 v~~~~  303 (310)
T TIGR01272       299 LPVPC  303 (310)
T ss_pred             HHHHH
Confidence            54433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.43  E-value=2.2e-12  Score=117.37  Aligned_cols=174  Identities=21%  Similarity=0.317  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHhhhhhhh-hhhhhhhhhcC----CCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMS-IAILPMSAEFN----WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWW  179 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~  179 (371)
                      +..++..-+..-+.++.+. .+.-++..+++    +++++..-+.++|..-.-+...++|+++||+ |+|+++++|.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            3344455555555554444 33445566665    9999998888888888888999999999996 9999999999999


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCc--chHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      ++|.++.+.+...+...++++-++.++|.|.+-+...++++|.+|++  +|-..++++.++.++|..++|++.+++.+++
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99999998883116788999999999999999999999999999854  4667788899999999999999999999999


Q ss_pred             CchhHHHHHhHHHHHHHHHHhh
Q 017461          258 GWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       258 gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      ||...|.+.++-..+.++..+.
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999877765555554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.8e-11  Score=113.33  Aligned_cols=188  Identities=13%  Similarity=0.069  Sum_probs=142.6

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      ..|+-....+.+......-+...+......+-++.|++..+..+......+...++.+++..+.||+|||+.++++..++
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~  345 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM  345 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            34444444444444444444555666667788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc-C-h--h---HHHHHHHHHHhhhhc-hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHH
Q 017461          180 SIATALTPVAAKL-G-L--P---FLLVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (371)
Q Consensus       180 ~i~~~~~~~~~~~-~-~--~---~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (371)
                      .+..+++...... + .  |   ..+++.++..++.+. ..|..+-+.+|.+|++.|..++++......+...+-...-.
T Consensus       346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp  425 (485)
T KOG0569|consen  346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP  425 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888776654311 1 1  1   122333333333332 35888899999999999999999998888888877777777


Q ss_pred             HHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCCC
Q 017461          252 FLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (371)
Q Consensus       252 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      .+.+..|= +.|++..+.+++.++..++..||++.+.
T Consensus       426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            77777666 7899999999999999999999986644

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.43  E-value=4.9e-12  Score=115.69  Aligned_cols=133  Identities=17%  Similarity=0.236  Sum_probs=119.4

Q ss_pred             hhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHH
Q 017461          125 IAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (371)
Q Consensus       125 ~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  203 (371)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.+. +.+.+++..++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  310 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFLVLWFA  310 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHH
Confidence            556776654 8999999999999999999999999999999999999999988888888888777762 38888899999


Q ss_pred             HHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .|++.+...+...+++.|.+|+++|+++.|+......+|..+++.++|.+.+..|
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999988654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.42  E-value=2.9e-11  Score=112.12  Aligned_cols=148  Identities=12%  Similarity=0.049  Sum_probs=118.4

Q ss_pred             hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHh
Q 017461          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGI  206 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~  206 (371)
                      .|.+.+++|++..+.+++...+.++..++.++.|++.||.+++..+....+..+...++....+  +.+.+.+..++.|+
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~G~  317 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGS--DKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHH
Confidence            4667788999999999999999999999999999999996544334433333444445545556  77888888999999


Q ss_pred             hhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHH
Q 017461          207 GEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       207 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      +.+...+...+++.+..| +++++..++......+|..+|+.++|.+.+..|++..++..+++.++..+..
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence            999888888888888886 5677888888888999999999999999999999998888776665554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.41  E-value=3.4e-12  Score=117.33  Aligned_cols=143  Identities=13%  Similarity=0.078  Sum_probs=105.6

Q ss_pred             hhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCC-chhHH-HHH-HHHHHHHHHhhhhhccChhH
Q 017461          121 VNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLG-FGV-VWWSIATALTPVAAKLGLPF  196 (371)
Q Consensus       121 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~-~~~-~~~~i~~~~~~~~~~~~~~~  196 (371)
                      .......|. +.+++|.+..+.+++.+.+.++..++.++.|++.||+++ |+... ... .+..++..........+.+.
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM  312 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence            334444555 456789999999999999999999999999999998643 33222 221 22222222222211114556


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHH
Q 017461          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (371)
Q Consensus       197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  263 (371)
                      +++..++.|+......+....++.|.+|+++|+++.|+......+|..++|.+.|.+.+..||++.|
T Consensus       313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            6677777887666666667788999999999999999999999999999999999999999998754

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.40  E-value=7.9e-11  Score=100.24  Aligned_cols=180  Identities=14%  Similarity=0.081  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHH
Q 017461          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (371)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  181 (371)
                      ||..+......... ....+.++...|.+++.+|++.++...+.++..+|..+ +++.|.+.|++|.+.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~~-~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLC-SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHh-cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            46655544444433 34567788999999999999999999999999999876 58999999999999999999999999


Q ss_pred             HHHHhhhhhc-----cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 017461          182 ATALTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       182 ~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (371)
                      |..+..++-.     .++|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...++++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            9988776532     257888888888888887777777777778896 6899999999999999888877766666554


Q ss_pred             cCchhHHHHHhHHHHHHHHHHhhcccCCC
Q 017461          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                      -.-.. +.+.+....+..++..++.+..+
T Consensus       158 ~~~~f-ll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  158 DPSSF-LLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             ChHHH-HHHHHHHHHHHHHHHhhheeccC
Confidence            22333 33444444444444444444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.40  E-value=2.3e-11  Score=112.71  Aligned_cols=151  Identities=17%  Similarity=0.132  Sum_probs=115.2

Q ss_pred             hhhhhhhhcCCCcchHHHHHHHHHH-HHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhh----ccChhHHHHH
Q 017461          126 AILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA----KLGLPFLLVV  200 (371)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~l~~~  200 (371)
                      ..+.+.+|.|++.+++|++.....+ ...++.++.|++.||+|+|+.+.++.++.++..+......    ..+.+.++..
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            4455556789999999999888764 6667789999999999999999887776644333222111    0033444555


Q ss_pred             HHHHHhhhhchhhhHHHHHhcccCC-cchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHH
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~  276 (371)
                      ..+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..||+..|++.+++.++..++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            5666777777777777887777766 789999999999999999999999999999999999999887766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.40  E-value=2.8e-11  Score=111.80  Aligned_cols=152  Identities=11%  Similarity=-0.014  Sum_probs=114.3

Q ss_pred             hhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh-hhccChhHHHHHHHHH
Q 017461          126 AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-AAKLGLPFLLVVRVFM  204 (371)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~r~l~  204 (371)
                      ..|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .+  +.+..++..++.
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~  299 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG--MKTASLIFAFIC  299 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHH
Confidence            345566778999999999999999999999999999999999999999998888888766544 44  556666677777


Q ss_pred             HhhhhchhhhHH-HHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc-cCchhHHHHHhHHHHHHHHHHhhcc
Q 017461          205 GIGEGVAMPAMN-NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       205 G~~~~~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~  281 (371)
                      +++.....+... ....+..+++.++..  .......+|.++||.++|.+.+. .+|++.+++.++++++.......+.
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            776655444433 344454445555544  34667889999999999999985 6899999988777665555444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.39  E-value=1.3e-11  Score=116.09  Aligned_cols=135  Identities=13%  Similarity=0.143  Sum_probs=111.3

Q ss_pred             hhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          124 SIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       124 ~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      ....+.+.++ ++ +....+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+.++ +.+.+++..+
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  319 (437)
T TIGR00792       242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS-NLPLILVLII  319 (437)
T ss_pred             cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch-hHHHHHHHHH
Confidence            3334444333 44 5667788888889999999999999999999999999999988888877766531 5677788889


Q ss_pred             HHHhhhhchhhhHHHHHhcccC-------CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCch
Q 017461          203 FMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  260 (371)
                      +.|++.+...+...++++|..+       ++++|.+.|+.+....+|..+++.+.|.+.+..||.
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999988999999998865       456799999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.38  E-value=3.4e-11  Score=109.38  Aligned_cols=151  Identities=10%  Similarity=0.069  Sum_probs=131.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhh
Q 017461          135 NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (371)
Q Consensus       135 ~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  214 (371)
                      +.++..+|.+.++..+.-++.-.+..++.+|+|.|+.++++..++++=.+++++++  +.+.+.+.+.++|+-.+.....
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHHHHH
Confidence            34566799999999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             HHHHHhcccCCcchHHHHHHH-HHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCC
Q 017461          215 MNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (371)
Q Consensus       215 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                      ...++++.+|++-.++...+. +.+.++|.++.+.++|.+.|+.|.+.+|++.+.+.+...++..+.++++++.
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999999988888888774 7889999999999999999999999999999998888777777776655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.38  E-value=5.7e-11  Score=110.72  Aligned_cols=159  Identities=11%  Similarity=0.008  Sum_probs=122.5

Q ss_pred             hhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhh---ccChhHHHH
Q 017461          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---KLGLPFLLV  199 (371)
Q Consensus       124 ~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~~~l~~  199 (371)
                      ....|. +.+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++.+++.++..+..   ..+++.+++
T Consensus       235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK15402        235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA  314 (406)
T ss_pred             HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            333455 4567899999999988888889999999999999999999999999888877777666532   125677788


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhh
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      +.++.|+|.+...+.......... +++||++.++++....+|..+|+.+++.+.+..++....+..++.+++..++...
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRI  393 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            889999998887776666554443 5899999999999999999999999999988888776555555555554444444


Q ss_pred             cccC
Q 017461          280 KAHS  283 (371)
Q Consensus       280 ~~~~  283 (371)
                      +.++
T Consensus       394 ~~~~  397 (406)
T PRK15402        394 FLKD  397 (406)
T ss_pred             Hhcc
Confidence            4333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.38  E-value=1.4e-11  Score=110.12  Aligned_cols=160  Identities=12%  Similarity=0.022  Sum_probs=121.5

Q ss_pred             ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc----------------
Q 017461          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------------  256 (371)
Q Consensus       193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------------  256 (371)
                      +++.++++-++.|.|.+...+..++++++..+++++++.+++.+.++++|..++|.+++.+...                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            7999999999999999999999999999999999999999999999999999999999987732                


Q ss_pred             cCchhHHHHHhHHHHHHHHHHhhc-ccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHH
Q 017461          257 FGWPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNW  335 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  335 (371)
                      ..|+++|++.+++.++..+++.+. .||.+.++.   ++..        .++   ....+.++++|.++...+..+++..
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~---~~~~--------~~~---~~~~~~~~~~~~~~l~~~~~f~yvg  154 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV---ARVS--------SGD---TTQKTSAFQFTHLVLGALGIFVYVG  154 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc---cccc--------ccc---ccchhhHHhhHHHHHHHHHHHHHHH
Confidence            369999997777655555444332 232211110   0000        000   0112246778888888888888888


Q ss_pred             HHHHHHHhhHHHHHHh--cCCChhhhhhhhhhe
Q 017461          336 GTFILLTWMPTYYNQV--SSFGSKTLSETVQVC  366 (371)
Q Consensus       336 ~~~~~~~~~~~~l~~~--~g~s~~~~~~~~~~~  366 (371)
                      ...+...|++.|+.+.  +|+++.+++...+..
T Consensus       155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~  187 (310)
T TIGR01272       155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYT  187 (310)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            8999999999999864  699999888876554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=2.7e-10  Score=107.06  Aligned_cols=221  Identities=15%  Similarity=0.048  Sum_probs=164.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHH-HHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHH
Q 017461          140 TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI  218 (371)
Q Consensus       140 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  218 (371)
                      ..++..++..+..++..|+.|.++|+-|+||.++ +..++..++++++.+.+..+++...+..++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999776655 455555666777777543356666666777778888888999999


Q ss_pred             HhcccCCcch--------------------------HHHHHHHHHHHHHHHHHHHHhHHHHhcc--------cCchhHHH
Q 017461          219 LSKWVPVAER--------------------------SRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVFY  264 (371)
Q Consensus       219 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gw~~~f~  264 (371)
                      +.|..+++++                          ++..+.-...+.+|.++.-.+.-.+...        .+-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999988                          8999998888888888877666554321        23488899


Q ss_pred             HHhHHHHHHHHHHhhcccCCCCCC-CCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHh
Q 017461          265 SFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTW  343 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (371)
                      +.++.-++..+..+++.|+.+..+ .+.....-..-.+       +-...++++.|.|.....+++++++.-+...+...
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~-------~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~  303 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFK-------RLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISF  303 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHH-------HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888888888876632 1111111000000       01335666777889999999999999999999999


Q ss_pred             hHHHHHHhcCCChhhhhhhhhhee
Q 017461          344 MPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       344 ~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ...|..+.+|++..+...+..+.+
T Consensus       304 ~~i~a~~~lg~s~~~l~~~~l~~~  327 (477)
T PF11700_consen  304 AGIYATEVLGMSTTQLIVFGLVVQ  327 (477)
T ss_pred             HHHHHHHhcCcCHHHHHHHHHHHH
Confidence            999999999999999777665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.38  E-value=7e-11  Score=111.02  Aligned_cols=158  Identities=11%  Similarity=0.023  Sum_probs=102.3

Q ss_pred             hhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh-hh-ccChhHH
Q 017461          121 VNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-AA-KLGLPFL  197 (371)
Q Consensus       121 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~-~~~~~~l  197 (371)
                      +.+...+|. +.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+.... .. ..+.+..
T Consensus       260 ~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        260 YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            334455666 45668999889999999888888999999999999999999888776654443322211 11 1023322


Q ss_pred             HHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHH
Q 017461          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~  275 (371)
                      +..-.+.+++.+...+....+++|++|++.|+.+.|+.+...++ +....|.+.+.+. ..| |...++..++..++.++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHH
Confidence            22223233333444455678889999999999999998766553 3445777777654 445 55555555555555544


Q ss_pred             HHhh
Q 017461          276 VWLS  279 (371)
Q Consensus       276 ~~~~  279 (371)
                      ..++
T Consensus       419 ~~~~  422 (432)
T PRK10406        419 VSLM  422 (432)
T ss_pred             HHHH
Confidence            4443

>TIGR00898 2A0119 cation transport protein

Probab=99.37  E-value=3.2e-11  Score=115.70  Aligned_cols=140  Identities=13%  Similarity=-0.019  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcc
Q 017461          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW  222 (371)
Q Consensus       143 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  222 (371)
                      +......+...++.++.+++.||+|||+.+.++.++.+++.++..+.+..+.+..++..++.+++.+..++..+.+.+|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445567778889999999999999999999999999998888877622235556666777777777888889999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCC
Q 017461          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (371)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                      +|++.|+.++|+......+|.+++|.+.+ +. ..++..++++.+++.++..++.+ +.||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            99999999999999999999999999998 44 35677788888877777666654 445543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.37  E-value=4.5e-11  Score=110.17  Aligned_cols=169  Identities=17%  Similarity=0.232  Sum_probs=134.9

Q ss_pred             HHHHhhhhhhhhhhhhhhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh-hc
Q 017461          114 LLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA-AK  191 (371)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~  191 (371)
                      ++............+.+.++.| .+....+.+.++..++-++.-.+.+++..|+|.|+++.++.+.+++=..+.+.. + 
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-  295 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            3444444555566666677777 777788888888888999999999999999999999999999999988888887 4 


Q ss_pred             cChhHHHH----HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHH-HHHHHHHHHHHhHHHHhcccCc------h
Q 017461          192 LGLPFLLV----VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGW------P  260 (371)
Q Consensus       192 ~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~gw------~  260 (371)
                       +.+...+    ...++|+..+..+.++..++.+.+|++.|+++.+++.. ..++|..+|..++|++.+.+|-      .
T Consensus       296 -~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~  374 (400)
T PF03825_consen  296 -PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWS  374 (400)
T ss_pred             -CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence             4444333    35579999999999999999999999999999999866 5789999999999999998764      4


Q ss_pred             hHHHHHhHHHHHHHHHHhhcccCC
Q 017461          261 SVFYSFGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~~~~~~~~~  284 (371)
                      ..+.+.+++.++..++++++.+|+
T Consensus       375 ~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  375 AVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCC
Confidence            455666666666666666655554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.36  E-value=1.3e-11  Score=117.14  Aligned_cols=151  Identities=17%  Similarity=0.037  Sum_probs=107.7

Q ss_pred             hhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCc-------hhHHHHHHHHHHHHHHhhhhhccChhHH
Q 017461          126 AILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK-------AVLGFGVVWWSIATALTPVAAKLGLPFL  197 (371)
Q Consensus       126 ~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~~~l  197 (371)
                      ..|. +.+++|++..+.+++.+++.++..++.+++|+++||+|||       ..+.+..++.+++.++.....  +.+..
T Consensus       274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--~~~~~  351 (476)
T PLN00028        274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--SLGAA  351 (476)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--hHHHH
Confidence            3444 5677899999999999999999999999999999999865       233333333344444445555  56666


Q ss_pred             HHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHH
Q 017461          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      ++..++.+++.+.......+++.+.. ++++|...|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.
T Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        352 IVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence            66667777766655566666677765 578999999988877777777776644 2234569999999887777766655


Q ss_pred             hhc
Q 017461          278 LSK  280 (371)
Q Consensus       278 ~~~  280 (371)
                      ++.
T Consensus       430 ~~~  432 (476)
T PLN00028        430 AFI  432 (476)
T ss_pred             Hhe
Confidence            544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.36  E-value=4.5e-11  Score=109.71  Aligned_cols=244  Identities=15%  Similarity=0.095  Sum_probs=184.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh----hCCchh-HHHHHHHHHHHH
Q 017461          110 FSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAV-LGFGVVWWSIAT  183 (371)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~  183 (371)
                      .++-+............+.. +.+.+|+++..+|.+..+.-+.-++.-|+.|.++||    +||+|. ++.+.+-.++.+
T Consensus        18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~   97 (467)
T COG2211          18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVA   97 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHH
Confidence            33344444444444444444 677799999999999999999999999999999995    786654 567778888888


Q ss_pred             HHhhhhhc----cChhHHHHHHHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhc---
Q 017461          184 ALTPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIH---  255 (371)
Q Consensus       184 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---  255 (371)
                      .++..+++    .+....++...+.+++.......-.++.+|+.+ +++|.+..++-..+.++|.++...+...+..   
T Consensus        98 ~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g  177 (467)
T COG2211          98 VLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG  177 (467)
T ss_pred             HHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88887773    356778888999999999999999999999976 7899999999999999987776666655543   


Q ss_pred             ----ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHH
Q 017461          256 ----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (371)
Q Consensus       256 ----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  331 (371)
                          ..||+...++.++++.+..+++++-.+|+..+....++..           +.+....+..+++|+.+...++..+
T Consensus       178 ~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~-----------~~~~~~~~~~~~~Nrp~~~~l~~~l  246 (467)
T COG2211         178 GGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV-----------KLKLKDSFLLIFKNRPLLLLLLMNL  246 (467)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------cccHHHHHHHHHccchHHHHHHHHH
Confidence                3478888888888888888888888777765332211100           0111234456889999999999888


Q ss_pred             HHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          332 CHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                      +...+.+...+....|.+...|.+.....+.+.
T Consensus       247 ~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~  279 (467)
T COG2211         247 LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLL  279 (467)
T ss_pred             HHHHHHHHHhhhhheeEEEEcCChHHHHHHHHH
Confidence            888888888888888888888887777755543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.36  E-value=4.9e-11  Score=111.24  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh-HHHHHHHHHHHHHH
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEF--NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWWSIATAL  185 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~  185 (371)
                      ..+.+++.......+...+|.+.+++  +.+..+.+++.+...++..++.++.|+++||+++|+. +.+..++.+++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~  326 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL  326 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence            33344444444555667788877765  5677888999999999999999999999999998775 44444444444333


Q ss_pred             hhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHH
Q 017461          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFY  264 (371)
Q Consensus       186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~  264 (371)
                      .....  +....+++-.+.++|.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..| |++.|+
T Consensus       327 ~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~  404 (412)
T TIGR02332       327 ASATD--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW  404 (412)
T ss_pred             HHhcC--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence            22222  322222222333333333334444555788999999999999999999999999999999999775 999988


Q ss_pred             HHhHH
Q 017461          265 SFGSL  269 (371)
Q Consensus       265 ~~~~~  269 (371)
                      +.+++
T Consensus       405 ~~~~~  409 (412)
T TIGR02332       405 FVAAL  409 (412)
T ss_pred             HHHHH
Confidence            76654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.35  E-value=2.6e-11  Score=114.66  Aligned_cols=175  Identities=16%  Similarity=0.153  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC--CchhHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIA  182 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~  182 (371)
                      .++...+...+..+...+....+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..++.++.+++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            444555566666667777888899999999999999999999999999999999999999988  556667888888888


Q ss_pred             HHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chh
Q 017461          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPS  261 (371)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  261 (371)
                      .+.+.+++  +++.++...++.|++.|........++.|..+.++-..+.|+...+.+++..+||+++|.+.|..| |..
T Consensus       379 ~~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  379 RLFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            89999999  999999999999999999888888899999999999999999999999999999999999988777 999


Q ss_pred             HHHHHhHHHHHHHHHHhhcc
Q 017461          262 VFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       262 ~f~~~~~~~~~~~~~~~~~~  281 (371)
                      .|+..++..++..++.++..
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999988777776655543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.34  E-value=1e-10  Score=108.76  Aligned_cols=148  Identities=14%  Similarity=0.156  Sum_probs=109.0

Q ss_pred             hhhhhhhcCCCcchHHHHHHHHH-HHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh---hhhhccChhHHHHHHH
Q 017461          127 ILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV  202 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r~  202 (371)
                      .+.+.+++|++..+++++..... ++..++.+++|++.||+|+|+.+.++.++.++..+..   ++.+ .+.+.++++-+
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            34567779999999999986654 5688999999999999999998887777666554433   3332 15565555543


Q ss_pred             ----HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          203 ----FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       203 ----l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                          +.|++.+...+....++.+.+|.++    .++.....++|..+++.++|.+.+..||+..|.+.++++++..++.+
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence                4556666667777777887776544    45566666778777777899999999999999998888877766654


Q ss_pred             h
Q 017461          279 S  279 (371)
Q Consensus       279 ~  279 (371)
                      .
T Consensus       388 ~  388 (402)
T PRK11902        388 L  388 (402)
T ss_pred             H
Confidence            4

>TIGR00896 CynX cyanate transporter

Probab=99.34  E-value=7e-11  Score=108.04  Aligned_cols=135  Identities=16%  Similarity=0.088  Sum_probs=109.1

Q ss_pred             hhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHHHHHHHHHhhhhhccChhHHHH
Q 017461          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV  199 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~  199 (371)
                      ......+|.+.++.|.+..+.+++.+...++..++.++.|++.||+ +||+.+.++.++.+++.+++.+..  +.+... 
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-  290 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--MHGLWA-  290 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHH-
Confidence            3344567777777899999999999999999999999999999999 566677788888888877777765  433222 


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      ..++.|++.+...+...+.+.+..+ +++++...++......+|..++|.+.|.+.++.|
T Consensus       291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578899999888887777765554 5667889999998899999999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.34  E-value=4.3e-11  Score=125.97  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=125.6

Q ss_pred             hhhh-hhhhhcCCCcc-hHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          125 IAIL-PMSAEFNWNPA-TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       125 ~~~~-~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      ..+| .+.+.+|.+.. ..+++.+...++.+++.+++|++.||+++++++.++.++.+++.++..+..  +.+.++++.+
T Consensus       253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  330 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVLFF  330 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence            3344 45677899998 999999999999999999999999999999999999998888888888888  8888999999


Q ss_pred             HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-ccCchhHHHHHhHHHHHHHH
Q 017461          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw~~~f~~~~~~~~~~~~  275 (371)
                      +.|++.+...+...+++.+.+|++.||+++|+.+....+|.++++.+++.+.. .+++...|++.+.+.++..+
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  404 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTL  404 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            99999999888999999999999999999999999999999888888877654 23455566665555444333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.33  E-value=5.6e-11  Score=110.41  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=119.5

Q ss_pred             hhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh-hhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHH
Q 017461          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  203 (371)
                      ...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.++++  +++.+++..++
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--NLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence            4567766665557788999988888777766666677665 56767777888888888888888888  78878888888


Q ss_pred             HHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc---Cc-hhHHHHHhHHHHHHHHHHh
Q 017461          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---GW-PSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---gw-~~~f~~~~~~~~~~~~~~~  278 (371)
                      .|++.+...+...+++.+..|+++||+++|+.+....+|..+||.++|.+.++.   ++ ...|++.++++++..+...
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence            999988888888999999999999999999999999999999999999998863   33 4555555555555544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.6e-11  Score=108.06  Aligned_cols=172  Identities=17%  Similarity=0.091  Sum_probs=134.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      +++.++........++..+|. ++++|++++.+.|.+...+.+...+..+.+|+++||+|.++++......++++..+.+
T Consensus       223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~  302 (417)
T COG2223         223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLS  302 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHH
Confidence            344444444455556666666 6788999999999999999999999999999999999999999999999988888777


Q ss_pred             hhhc-----cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chh
Q 017461          188 VAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPS  261 (371)
Q Consensus       188 ~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  261 (371)
                      +...     .+....++..+..++..|........++..++ +++-|.+.|+.+...++|+..-|..-+...+..| +..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~  381 (417)
T COG2223         303 LFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTG  381 (417)
T ss_pred             ccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHH
Confidence            6641     14555555455555555555556667777777 4588999999999999999999999998888777 899


Q ss_pred             HHHHHhHHHHHHHHHHhhcc
Q 017461          262 VFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       262 ~f~~~~~~~~~~~~~~~~~~  281 (371)
                      .|++...+.+++.++.+...
T Consensus       382 ~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         382 AFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988888877665543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.32  E-value=1.1e-10  Score=110.82  Aligned_cols=172  Identities=12%  Similarity=0.038  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhH--------HHHHH
Q 017461          107 VLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL--------GFGVV  177 (371)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~--------~~~~~  177 (371)
                      ....+..+........+...+|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            344444455555555555666764 567899999999999999999999999999999998755321        11111


Q ss_pred             HHHHHHHH--hhh-hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          178 WWSIATAL--TPV-AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       178 ~~~i~~~~--~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      +...+..+  ... ..  +.+..+++-.+.+.+.++..+.......|..| +.+|.+.++.+....+|..++|.+.+.+.
T Consensus       344 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       344 GLGPGIFAYALPYLSA--AFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             HHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            11111111  112 22  34444555555566555555555556667775 58999999999999999999999999887


Q ss_pred             ccc---CchhHHHHHhHHHHHHHHHHhhcc
Q 017461          255 HRF---GWPSVFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       255 ~~~---gw~~~f~~~~~~~~~~~~~~~~~~  281 (371)
                      +..   +|...|.+.+++.++..++..+..
T Consensus       421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       421 SQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            643   388889888877777666555443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.4e-10  Score=97.78  Aligned_cols=155  Identities=12%  Similarity=0.101  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHH-HH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI-AT  183 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i-~~  183 (371)
                      ++.++++.+.+..+-..  ......+++.||+|+...+.+.+......++.+++.|.++||+|++...+.+..+..+ +-
T Consensus       268 ~~~iicv~yyva~fPFi--~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H  345 (459)
T KOG4686|consen  268 VLVIICVLYYVAWFPFI--TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGH  345 (459)
T ss_pred             HHHHHHHHHHHHHHHHh--hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHh
Confidence            34444444444333322  2223347899999999999999999999999999999999999999877766555444 33


Q ss_pred             HHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC---ch
Q 017461          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WP  260 (371)
Q Consensus       184 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---w~  260 (371)
                      ....++    ++.=.++..+.|+............++-..|+++.|++.|..+...++|.++.|+++|++.+.-|   |-
T Consensus       346 ~~l~Ft----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l  421 (459)
T KOG4686|consen  346 SGLFFT----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL  421 (459)
T ss_pred             hhHHhh----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence            444443    23345567788888887766678889999999999999999999999999999999999998654   44


Q ss_pred             hHHHH
Q 017461          261 SVFYS  265 (371)
Q Consensus       261 ~~f~~  265 (371)
                      -+|.+
T Consensus       422 e~ffl  426 (459)
T KOG4686|consen  422 EAFFL  426 (459)
T ss_pred             HHHHH
Confidence            44443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.31  E-value=1e-10  Score=104.45  Aligned_cols=169  Identities=18%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      ..+++.-..+.++. ..++......-..++|++..++.++.....+..+++++++|+|.||+|.|+++.++.++..+.++
T Consensus       255 ~~FLiA~~~~~DGv-~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~  333 (438)
T COG2270         255 VLFLIARFFYIDGV-NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL  333 (438)
T ss_pred             HHHHHHHHHHHhhH-HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence            33333333344433 33344434445569999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVF  263 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f  263 (371)
                      ...+..  .-..+.++..+.|+..|..+..+.++.++..|+++-++.+|++......+..+||++.+.+.+..| -|..+
T Consensus       334 ~~~~~~--~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         334 YLIFLE--GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHHcc--ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            888887  677788888999999999999999999999999999999999999999999999999999887554 56666


Q ss_pred             HHHhHHHHHHHHH
Q 017461          264 YSFGSLGTVWFTV  276 (371)
Q Consensus       264 ~~~~~~~~~~~~~  276 (371)
                      ....++..+.+++
T Consensus       412 ~~i~vll~iGl~~  424 (438)
T COG2270         412 LSIIVLLLIGLLL  424 (438)
T ss_pred             HHHHHHHHhhHhh
Confidence            6555444443333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.30  E-value=3.4e-11  Score=111.98  Aligned_cols=256  Identities=17%  Similarity=0.140  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc-hHHHHHH----HHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPA-TVGLIQS----SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s----~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      ......++-.+..++.........+.....++.+.. ..+....    ...+...+.++..|.++||+|||..+.+..+.
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            344455555555555555555556665555543222 2233333    33678889999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccChhHHHHHHHHHHhhh--hchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 017461          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGE--GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       179 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (371)
                      ..+..+...+..   +|.++    +.|+..  +.......++++|....++|...+|+....+..+..++|.+++.+...
T Consensus       102 ~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  102 TILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            888888877765   44444    444432  345677889999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhc-cCCCCcccchhhhhhcChhHHHHHHHHHHHHH
Q 017461          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPVKTIPWGLILSKPPVWALIVSHFCHNW  335 (371)
Q Consensus       257 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  335 (371)
                      +|.-.+|.+.++..++..+..+++.||+..++............... ..............-.+|..+.+++..++...
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~  254 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSL  254 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHH
Confidence            99999999999999999888888888876654433100000000000 00000000111111223455555555555444


Q ss_pred             HHHHHHH-hhHHHHHHhcCCChhhhhhhhhhe
Q 017461          336 GTFILLT-WMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       336 ~~~~~~~-~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      ....-.. .++.|+...+|++..+.+.+.+..
T Consensus       255 ~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~  286 (463)
T KOG2816|consen  255 PEAGGASDVLLLYLKAKFGWNKKEFSDLLSLV  286 (463)
T ss_pred             HHhcCceeEEEEEEeeecCcCHHHHHHHHHHH
Confidence            4433222 446677777888888888665544

>PRK09848 glucuronide transporter; Provisional

Probab=99.30  E-value=6.7e-11  Score=111.69  Aligned_cols=138  Identities=18%  Similarity=0.133  Sum_probs=109.3

Q ss_pred             hhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHH
Q 017461          122 NMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (371)
Q Consensus       122 ~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  200 (371)
                      ......+.+ ++.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+..+++.+++.
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            344445544 4456765554555555556778889999999999999999999999998888877776543367777788


Q ss_pred             HHHHHhhhhchhhhHHHHHhcccCCc-------chHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVPVA-------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      .++.|+|.+...+...++.+|..+.+       ++|...|+.+....+|..+|+.+.+.+.+..|+
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            89999999999999999998888643       459999999999999999999999988776655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.30  E-value=3.5e-11  Score=104.93  Aligned_cols=132  Identities=12%  Similarity=0.120  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccCh--hHHHHHHHHHHhhhhchhhhHHHHHhcccCCc
Q 017461          149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL--PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA  226 (371)
Q Consensus       149 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  226 (371)
                      .+.-..|.++.+++.||+|||+.+.++.+++++..++...+...|.  .+++++|++    ..+.+.+.+.|..|.+|.+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchh
Confidence            4566788899999999999999999999999999988887773332  233344544    4445667788999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCC
Q 017461          227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                      .|+.+.|.-.....+|+++.|+++  +.....-..+..+.+.++++..++..+++-|++.
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence            999999999999999999999999  3333344556777788888888888777666544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.29  E-value=7.5e-11  Score=123.92  Aligned_cols=152  Identities=12%  Similarity=0.050  Sum_probs=122.8

Q ss_pred             hhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh------------
Q 017461          123 MSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA------------  189 (371)
Q Consensus       123 ~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------------  189 (371)
                      +...+|.+ .+.+|.+..+.|++.+++.++.+++.++.|+++|+.++++.+..+.++.+++.+.+.+.            
T Consensus       244 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        244 VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            33445554 55689999999999999999999999999999999888877777766666655544442            


Q ss_pred             --------hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc-ccCch
Q 017461          190 --------AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWP  260 (371)
Q Consensus       190 --------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw~  260 (371)
                              .  +.|.++++.++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++++.+.+ ..++.
T Consensus       324 ~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~  401 (1140)
T PRK06814        324 SILVFLSKR--HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP  401 (1140)
T ss_pred             chhhhhccc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence                    4  678888899999999999999999999999999999999999999999999999999998874 45666


Q ss_pred             hHHHHHhHHHHHHHHH
Q 017461          261 SVFYSFGSLGTVWFTV  276 (371)
Q Consensus       261 ~~f~~~~~~~~~~~~~  276 (371)
                      ..|++.+++.++..++
T Consensus       402 ~~~~~~~~~~~~~~~~  417 (1140)
T PRK06814        402 WIILFIALANLIVAIL  417 (1140)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666655554444333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.27  E-value=7.1e-10  Score=99.25  Aligned_cols=224  Identities=14%  Similarity=0.136  Sum_probs=158.2

Q ss_pred             hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC-----CchhHH-HHHHHHHHHHHHhhhhh----c-------
Q 017461          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLG-FGVVWWSIATALTPVAA----K-------  191 (371)
Q Consensus       129 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~-~~~~~~~i~~~~~~~~~----~-------  191 (371)
                      .+..|++++....+.+.+...+.. ...+.+|..+|+.+     ||..++ .|.++.+.+..+..++.    .       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            466789999999999998887764 57999999999998     775544 56666666655544431    1       


Q ss_pred             cC-h--hHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhH---HHH
Q 017461          192 LG-L--PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV---FYS  265 (371)
Q Consensus       192 ~~-~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~---f~~  265 (371)
                      .. .  ....+...+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+.-.-.   +..
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            11 2  23445578889999988999999999999999999999999999999999999999998887653222   222


Q ss_pred             HhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 017461          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      .+++.++..++. .+..|++..+....          .+++++.....+++++.+|....+++..++..+.++.--..+-
T Consensus       164 ~a~i~~~l~~ia-~wg~E~r~~~~~~~----------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLE  232 (403)
T PF03209_consen  164 VALIALLLNLIA-LWGQEPRRSRRAAA----------AERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILE  232 (403)
T ss_pred             HHHHHHHHHHHH-HHhcccCCcccccC----------CCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcC
Confidence            222322222222 22333333222200          0112222345677888899999888888888888888888888


Q ss_pred             HHHHHhcCCChhhhhhhhh
Q 017461          346 TYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       346 ~~l~~~~g~s~~~~~~~~~  364 (371)
                      .|--+++|++..+..-+..
T Consensus       233 Pygg~Vfgmsv~eTT~Lta  251 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTA  251 (403)
T ss_pred             CchhHHcCCCHHHHHHHHH
Confidence            8888999999988776544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.26  E-value=3e-10  Score=105.34  Aligned_cols=134  Identities=11%  Similarity=0.072  Sum_probs=97.1

Q ss_pred             hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhh
Q 017461          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEG  209 (371)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~  209 (371)
                      +.+++|.+..+.+.+.+...++..++.++.|++.||+|+|+++.++.++..++.++..+.+  +.+..++.-++.+.|.+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999988888888776  55555555555555544


Q ss_pred             chhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHH
Q 017461          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (371)
Q Consensus       210 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~  270 (371)
                      ...+..  ...+..|.++|+   +.......++..+|+.+++++.+..|+.....+.+.+.
T Consensus       308 ~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        308 VGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            433332  334445544443   44445566777778888888888778766555544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.26  E-value=1.1e-10  Score=111.30  Aligned_cols=135  Identities=13%  Similarity=0.166  Sum_probs=114.9

Q ss_pred             hhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh--hhccChhHHHH
Q 017461          123 MSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLV  199 (371)
Q Consensus       123 ~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~  199 (371)
                      .....|.+ ++.+|.+..+.+++.....++..++.++.|++.||+|||+++.++.++.+++.++..+  .++.+++.+++
T Consensus       274 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (485)
T TIGR00711       274 SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL  353 (485)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            34455654 4568999999999999999999999999999999999999999999988888877663  22225677778


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      ..++.|+|.+...+.......+..|+++|+.+.++......+|..+|+.+.+.+.++.
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999888777788888899999999999999999999999999999887753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.25  E-value=4.3e-11  Score=109.31  Aligned_cols=148  Identities=18%  Similarity=0.183  Sum_probs=134.9

Q ss_pred             hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhh
Q 017461          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEG  209 (371)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~  209 (371)
                      -.|+.+-.+...|........+-++.-++.+++..|+|+-+++.+++.+.++=.+..+..+  |.|..+..-+++|+..+
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~a  474 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHA  474 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHH
Confidence            3566776777888888888888999999999999999999999999999999999999999  99999999999999999


Q ss_pred             chhhhHHHHHhcccCCcchHHHHHHHH-HHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhh
Q 017461          210 VAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       210 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      .+|.+..+|+++..|++-|+.+.++.+ ...++|-.+|.++||.+.+.+|-|..|++.++.+++.+++...
T Consensus       475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999974 5578999999999999999999999999999988887776554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.24  E-value=3e-10  Score=104.84  Aligned_cols=140  Identities=15%  Similarity=0.248  Sum_probs=105.4

Q ss_pred             hhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhc---cChhHHHH
Q 017461          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK---LGLPFLLV  199 (371)
Q Consensus       124 ~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~l~~  199 (371)
                      ....|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++.++..++.+++.+...   .+.+.+++
T Consensus       226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG  305 (385)
T ss_pred             HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            334454 45688999999999999999999999999999999999999999888888877766655421   13455566


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhcccCchhHHHH
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      ..++.|++.+...+.......|..| ++|+++.++.+..... |.+.++.+ +.+.+..+|...+..
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence            6788999999888888889899885 6899999998777654 55555554 455444445444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.24  E-value=7e-10  Score=102.84  Aligned_cols=147  Identities=17%  Similarity=0.097  Sum_probs=117.1

Q ss_pred             hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhh
Q 017461          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE  208 (371)
Q Consensus       129 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~  208 (371)
                      .+++.+|.++.+.|++.+...++..+++++.+++.||+++|+++..+.+ .++..++..+.+  +++.+++..++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--SLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--HHHHHHHHHHHHHHhh
Confidence            3566789999999999999999999999999999999999998888753 444555556666  7777788888999998


Q ss_pred             hchhhhHHHHHhcccCCcc-hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhh
Q 017461          209 GVAMPAMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       209 ~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      +...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-+..+.+.+...++.+.+.+.
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL  378 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888766554 79999999999999999999998865 5678777777655544444444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.24  E-value=4.9e-10  Score=106.45  Aligned_cols=143  Identities=10%  Similarity=0.021  Sum_probs=110.2

Q ss_pred             HhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh---hhccC
Q 017461          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV---AAKLG  193 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~  193 (371)
                      ...........+++.+...-+....+++.++..++.+++.++++++.||+|+|+.+.++.++.+++.+...+   ....+
T Consensus       244 ~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
T PRK10429        244 NIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHN  323 (473)
T ss_pred             HHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence            334444555555665554446667778888777899999999999999999999999888877766655433   12125


Q ss_pred             hhHHHHHHHHHHhhhhchhhhHHHHHhcccC-------CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      .+.+++.-++.|++.+...+...++++|..+       .++.|..+|+.....-+|..+++.+.|++.+..|+
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777888899999999999999999999955       34457789999999999999999999998876655

>PRK10133 L-fucose transporter; Provisional

Probab=99.22  E-value=6.7e-10  Score=104.36  Aligned_cols=140  Identities=10%  Similarity=0.037  Sum_probs=114.9

Q ss_pred             hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhc
Q 017461          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (371)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  210 (371)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.+  +. ..+..-++.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GH-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999888887777766666  54 335567889999999


Q ss_pred             hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHH
Q 017461          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~  275 (371)
                      .+|...+...+.++ ++.+.+.++... ..+|..++|++.|.+.+..| -+..|++..+..+....
T Consensus       364 i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        364 QYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            99999999999985 456777887764 44688889999999999887 78888865554444333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.21  E-value=1.2e-09  Score=101.60  Aligned_cols=165  Identities=10%  Similarity=0.006  Sum_probs=113.1

Q ss_pred             hhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh-hhh---ccCh
Q 017461          119 DRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP-VAA---KLGL  194 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~~---~~~~  194 (371)
                      .+..++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.++.+++..... ..+   ..++
T Consensus       267 ~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~  345 (462)
T PRK15034        267 SFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNF  345 (462)
T ss_pred             HHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHH
Confidence            333345455554433 22233333334455678889999999999999999999999887777664322 222   1146


Q ss_pred             hHHHHHHHHHHhhhhchhhhHHHHHhcccCC---------------------cchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV---------------------AERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      +.+.++.+...++.|........++.+++|.                     ++-|.+.|+.+....+|+.+.|.+-+..
T Consensus       346 ~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~  425 (462)
T PRK15034        346 IAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMS  425 (462)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence            6666666665566666666777777777763                     2567889999999999999999877777


Q ss_pred             hccc-CchhHHHHHhHHHHHHHHHHhhcccCC
Q 017461          254 IHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       254 ~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~  284 (371)
                      .+.. ++...|++..+..+++.++.+.+.-++
T Consensus       426 ~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        426 LNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            6654 488888888888888887777665443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.21  E-value=3.8e-10  Score=107.83  Aligned_cols=132  Identities=13%  Similarity=0.117  Sum_probs=113.5

Q ss_pred             hhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhh-ccChhHHHHHH
Q 017461          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-KLGLPFLLVVR  201 (371)
Q Consensus       124 ~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~r  201 (371)
                      ....|. +++.+|.++.+.|+....+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.. ..+.+...+..
T Consensus       279 ~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        279 ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            344454 5667899999999999999999999999999999999999999999988888876655432 12566677788


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      ++.|+|.|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888888889999999999999999999999999999999998866

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.20  E-value=8.8e-10  Score=103.44  Aligned_cols=150  Identities=15%  Similarity=0.134  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      .++..++............+++.++ +| ++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~  308 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF  308 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence            3333444445555556666666555 55 447788888999999999999999999999999999999999999998888


Q ss_pred             hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCC-------cchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +.+..|.+.+++..++.|++.+.......++++|..+.       ++.|...|+......+|..+++.+.+.+.+..|+
T Consensus       309 ~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  309 FLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            87533899999999999999999999999999998863       3458999999999999999999999988776554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.19  E-value=1.1e-09  Score=100.45  Aligned_cols=158  Identities=11%  Similarity=-0.033  Sum_probs=109.6

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCc---hhHH-HHHHHHHHHHHHhhh
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK---AVLG-FGVVWWSIATALTPV  188 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr---~~~~-~~~~~~~i~~~~~~~  188 (371)
                      .++.....+.+...+|.+.++.|.+.. .+...++..++..++   .++++||+.||   +... ...++.+++..+..+
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~  276 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555677887777777754 566555555555544   46777776543   3333 244444544445455


Q ss_pred             hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhH
Q 017461          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (371)
Q Consensus       189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  268 (371)
                      ..  +.+..++.-.+.|++.....+..+++.+|.+|++.|+++.|+.+....+|..++|++.+.+..  |-...|.+.++
T Consensus       277 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~  352 (368)
T TIGR00903       277 EL--NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAI  352 (368)
T ss_pred             cc--ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence            54  444555566777777777777888999999999999999999999999999999999987774  67788888887


Q ss_pred             HHHHHHHHHh
Q 017461          269 LGTVWFTVWL  278 (371)
Q Consensus       269 ~~~~~~~~~~  278 (371)
                      +.++..+..+
T Consensus       353 ~~~i~~~~~~  362 (368)
T TIGR00903       353 LITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHH
Confidence            7777666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.18  E-value=5.8e-10  Score=102.00  Aligned_cols=121  Identities=15%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             hhhhhhhhhhhhhhcCCCcchHHHHHHHHH-HHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh-hc------
Q 017461          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA-AK------  191 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~------  191 (371)
                      ........|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|+|+.+.++.++.+++..+..+. ..      
T Consensus       225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (356)
T TIGR00901       225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGI  304 (356)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            334445566666669999999998888766 5778999999999999999999999888888877665543 10      


Q ss_pred             --cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHH
Q 017461          192 --LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY  240 (371)
Q Consensus       192 --~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  240 (371)
                        .+.+.++.+.++.+++.+...+...+++.|.+|+++||+.+|+.+...+
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence              1467788889999999999999999999999999999999999887654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.17  E-value=2.8e-09  Score=101.20  Aligned_cols=174  Identities=14%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhh-hhcCCCcc----hHHHHHHHHHHHHHHHHHHHHHhhhhhCC-----chhH--HH
Q 017461          107 VLCFSAFLLCNMDRVNMSIAILPMS-AEFNWNPA----TVGLIQSSFFWGYLLTQIAGGIWADTVGG-----KAVL--GF  174 (371)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-----r~~~--~~  174 (371)
                      ..+++..++...........++... ++.+.+..    ..+++.++..+...+.+++..++..+.+|     +...  .+
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~  354 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL  354 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            3333333343444444444444433 33443322    27788898999888888886654444433     3444  77


Q ss_pred             HHHHHHHHHHHhhh---------hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHH
Q 017461          175 GVVWWSIATALTPV---------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT  245 (371)
Q Consensus       175 ~~~~~~i~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  245 (371)
                      |.++.+++.+..++         ..  |+|++++..++.|+|.....|...+++.+..|++.||+++|++.....+|..+
T Consensus       355 G~~l~~~~~~~~~~~~~~~~~~~~~--s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       355 GMLFCGASFLTFAASIWFADAGGLT--SPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCcc--CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877765         34  89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhccc
Q 017461          246 GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (371)
Q Consensus       246 g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  282 (371)
                      ++.+.....+..+|.+.|...+++.++..++.++..|
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988877778998888888877777666655433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.16  E-value=5.7e-10  Score=101.54  Aligned_cols=129  Identities=18%  Similarity=0.265  Sum_probs=109.9

Q ss_pred             hhhhhhhhhhhh-hhhcCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhcc-Chh
Q 017461          119 DRVNMSIAILPM-SAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-GLP  195 (371)
Q Consensus       119 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~-~~~  195 (371)
                      .........|.+ .+++|.+ ..+.+++.++..++..++.++.|++.||+|+|+.+.+......++.+...+.... +..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            333466667764 8889999 7899999999999999999999999999999888888877777777666555421 456


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (371)
                      ..++..++.|++.+...+....++.|.+|+++||++.|+.....++|..+||
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7777889999999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.16  E-value=2.8e-09  Score=99.16  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             hhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh---hhhhccChhHHHHH
Q 017461          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVV  200 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~l~~~  200 (371)
                      ....|.+.+++|.+..+.++......++..++.++.+++.||+|+|+.+..+.++.+++.+..   .+....+++.+++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            344666777889999999998888889999999999999999999987766555544443322   22111156666667


Q ss_pred             HHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchh
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  261 (371)
                      ..+.|++.+...+.......+..| +++|++.|+++.....+..+++.+.+.+.+......
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            788899888888888888878775 689999999999888888889888888877433333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.15  E-value=3.1e-09  Score=94.25  Aligned_cols=159  Identities=29%  Similarity=0.528  Sum_probs=128.9

Q ss_pred             HHHhhhhhhhhhhhhhhhhcCCCc--chHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhcc
Q 017461          115 LCNMDRVNMSIAILPMSAEFNWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (371)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  192 (371)
                      ....+........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++.+....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
T COG0477          13 LLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV   92 (338)
T ss_pred             HHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence            333555666677788888887666  489999999999999999999999999999988888887766666777777611


Q ss_pred             ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCC-cchHHHHHHHHH-HHHHHHHHHHHhHHHHhcc--cCchhHHHHHhH
Q 017461          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYS-GMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGS  268 (371)
Q Consensus       193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~gw~~~f~~~~~  268 (371)
                      +.+.+++.|++.|++.+...+...+++.|+++. ++|+...+.... ...+|..+++.+++.+...  .+||+.|.+...
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL  172 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            388999999999999999999999999999987 688999999888 5888899999888777654  579997777666


Q ss_pred             HHHHH
Q 017461          269 LGTVW  273 (371)
Q Consensus       269 ~~~~~  273 (371)
                      .....
T Consensus       173 ~~~~~  177 (338)
T COG0477         173 LGLLL  177 (338)
T ss_pred             HHHHH
Confidence            55443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.13  E-value=5.2e-09  Score=91.72  Aligned_cols=177  Identities=12%  Similarity=0.086  Sum_probs=141.3

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVW  178 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~  178 (371)
                      +..|.+.+.+.+    ..+..++.-..+|.+..|-|+|..+.|+..+...+.....++....+.+|. ++|+..+...++
T Consensus       208 ~~aW~vtLfmGl----qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         208 PLAWQVTLFMGL----QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             chhHHHHHHHHh----hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            344554443333    334456667789999999999999999999999999999999999999965 578888888899


Q ss_pred             HHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCC-cchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       179 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      +.++.+.+.+.+..+++.  . -++.|+|.|..++.+..++.+..+. ++-+...|+.+....+=..+||++.|++-|..
T Consensus       284 ~l~G~~G~~~~P~~~~~l--w-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         284 MLVGLVGLLLAPGQLPIL--W-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHhhhhHHHH--H-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            999999988888432222  2 4999999999999999999888864 44466677888888888899999999999965


Q ss_pred             -CchhHHHHHhHHHHHHHHHHhhcccC
Q 017461          258 -GWPSVFYSFGSLGTVWFTVWLSKAHS  283 (371)
Q Consensus       258 -gw~~~f~~~~~~~~~~~~~~~~~~~~  283 (371)
                       +|...++..+...+++.+.-+..-|+
T Consensus       361 gsw~~~~~~l~~~~i~m~i~Gl~a~r~  387 (395)
T COG2807         361 GSWSAPLVLLALATLLMLIFGLRAGRN  387 (395)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhhcchh
Confidence             59999998888888877776665443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.12  E-value=3.4e-09  Score=97.68  Aligned_cols=123  Identities=15%  Similarity=0.077  Sum_probs=89.0

Q ss_pred             hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh--hccChhHHHHHHHHHHh
Q 017461          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGLPFLLVVRVFMGI  206 (371)
Q Consensus       129 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~l~~~r~l~G~  206 (371)
                      .+.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.++..+..+.....  .+.+.+.+.++-.+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3566789999999999999999999999999999999999999998887654433322211  11145555555555555


Q ss_pred             hhhchhhhHHHHHhcccCCcchHHHHHHHHHH-HHHHHHHHHHhHHH
Q 017461          207 GEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPF  252 (371)
Q Consensus       207 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~  252 (371)
                      +.+........++.|..| ++++.+.++.... ..+|..+++.+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            555556666677888775 7899999886554 55777777766543

>PRK09669 putative symporter YagG; Provisional

Probab=99.11  E-value=2.3e-09  Score=101.13  Aligned_cols=136  Identities=12%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             hhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHH
Q 017461          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  203 (371)
                      +....++.++.--+.+..+.+.....++..++.+++++++||+|+|+.+.++.++.+++.+...+.+..+.+.+++..++
T Consensus       249 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  328 (444)
T PRK09669        249 GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNIL  328 (444)
T ss_pred             hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            33334444433223444555666777888889999999999999999999888766654443333322267778888899


Q ss_pred             HHhhhhchhhhHHHHHhcccC-------CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          204 MGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       204 ~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      .|++.+...+...++++|..+       .++.|...++...+..+|..+|+.++|.+.+..|+
T Consensus       329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999998875       23346778899999999999999999999887766

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.07  E-value=9e-09  Score=92.15  Aligned_cols=223  Identities=16%  Similarity=0.040  Sum_probs=165.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh-HHHHHHHHHHHHHHhhhhhc-cChhHHHHHHHHHHhhhhchhhhH
Q 017461          138 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAM  215 (371)
Q Consensus       138 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~  215 (371)
                      .+..+...++..+..++.+|+.|.++|+.|+||. +-....+..++.++..+++. ..++..++...+..++..+..+..
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3456888889999999999999999999996655 55667777777788888874 235556666788888888888999


Q ss_pred             HHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHH--HHh----------------cccCchhHHHHHhHHHHHHHHHH
Q 017461          216 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP--FLI----------------HRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       216 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~----------------~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      .+++.+..++++-++..++-.....+|.++.-++.-  ++.                +...-|.++.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            999999999888888888877777777666544431  111                22346888999999988888888


Q ss_pred             hhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChh
Q 017461          278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSK  357 (371)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~  357 (371)
                      +...++.+.........-.+.        -++....++++.+++.+....++.+++.-+.++...+...|....+|++..
T Consensus       217 ~~~v~~~~~~~~~~~~~l~~g--------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         217 ILNVHDAEKISSPPPTALRNG--------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             HhcccccccccccchHHHHHH--------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            888877664321111111000        001134677888889999999999999999999999999999978999999


Q ss_pred             hhhhhhhheee
Q 017461          358 TLSETVQVCTT  368 (371)
Q Consensus       358 ~~~~~~~~~~~  368 (371)
                      +..++....++
T Consensus       289 ~lll~g~~~~v  299 (438)
T COG2270         289 ELLLIGIALSV  299 (438)
T ss_pred             HHHHHHHHHHH
Confidence            98887655543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.03  E-value=1.4e-08  Score=94.50  Aligned_cols=141  Identities=11%  Similarity=0.017  Sum_probs=105.9

Q ss_pred             hhhhhhhhhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHH
Q 017461          123 MSIAILPMSAEF--NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (371)
Q Consensus       123 ~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  200 (371)
                      ....++.+.++.  +.+....+...+.+..+..++.++++++.||+++|+++.++.++.++..++..+.+  +... +.+
T Consensus       251 ~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--~~~~-~~~  327 (410)
T TIGR00885       251 CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--GHVG-LYC  327 (410)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--ChHH-HHH
Confidence            344455554443  33444455566777788899999999999999999999999999999988888877  5443 567


Q ss_pred             HHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc------CchhHHHHHhH
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF------GWPSVFYSFGS  268 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------gw~~~f~~~~~  268 (371)
                      -++.|++.+.++|...++..+..+++.+....++.. + .+|.+++|++.|.+.|..      +.+..|++..+
T Consensus       328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~  399 (410)
T TIGR00885       328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL  399 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence            788889999999999999999996554433333333 3 399999999999999954      46777776443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.03  E-value=4.4e-08  Score=95.40  Aligned_cols=158  Identities=19%  Similarity=0.237  Sum_probs=128.4

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHHHHHhhhhhcc------Chh
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAKL------GLP  195 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~------~~~  195 (371)
                      ...+...+.+.+|.+.+....+...+....-+..+++|.++|+ +|+++.+.++.++..+|.++.++....      ...
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~   86 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL   86 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence            3444556667789999999999999999999999999999996 699999999999999999888775310      123


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhcccCCc---chHHHHHHHHHHHHHHHHHHHHhHHHHhccc-------CchhHHHH
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYS  265 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------gw~~~f~~  265 (371)
                      ..+++-.+..+|.|++-+...+...|.++++   +|-..+.++..+.++|..+++++.+++.+.+       +|...|.+
T Consensus        87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i  166 (654)
T TIGR00926        87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV  166 (654)
T ss_pred             HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence            4667788888999999999999999999754   3667788889999999999999999887443       69999999


Q ss_pred             HhHHHHHHHHHHhhc
Q 017461          266 FGSLGTVWFTVWLSK  280 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~  280 (371)
                      .+++.++.+++.+..
T Consensus       167 ~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       167 PAILMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888877776665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.00  E-value=1.9e-09  Score=100.72  Aligned_cols=159  Identities=16%  Similarity=0.162  Sum_probs=128.6

Q ss_pred             hhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-----CCchhHHHHHHHHHHHHHHhhhhhc--cChhH
Q 017461          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAVLGFGVVWWSIATALTPVAAK--LGLPF  196 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~~~~~~~~~~i~~~~~~~~~~--~~~~~  196 (371)
                      ....+.+.+++|+++.+...+.+...+.- ...++.|.++|-+     -||+-++++.++.+++.+.++..+.  .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            45577889999999999988887776654 4577889999976     3666677888888777766666542  14666


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHHhcccC--CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHH
Q 017461          197 LLVVRVFMGIGEGVAMPAMNNILSKWVP--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF  274 (371)
Q Consensus       197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~  274 (371)
                      ..+.-++..+|......++-+++.|...  ++.||...+.......+|.+++..++|.+.+..++++.|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            7777888899999999999999999974  34478888888999999999999999999999999999999988888877


Q ss_pred             HHHhhcccC
Q 017461          275 TVWLSKAHS  283 (371)
Q Consensus       275 ~~~~~~~~~  283 (371)
                      +..++..+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence            777776666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00788 fbt folate/biopterin transporter

Probab=99.00  E-value=8.1e-09  Score=97.78  Aligned_cols=126  Identities=15%  Similarity=0.165  Sum_probs=111.8

Q ss_pred             hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh----------hccChhHHHHH
Q 017461          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA----------AKLGLPFLLVV  200 (371)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~l~~~  200 (371)
                      .+.+|.++.+.|++.....++.+++..+.+++.+|++.|+++.++.++.+++.+.....          +  +.+.++..
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~--~~~~~~~~  357 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS--DEVFVLGD  357 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC--Ceeeeeeh
Confidence            35789999999999999999999999999999999999999999999999887554311          2  44456666


Q ss_pred             HHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      -++.+++.+........++.+..|++.+|...++.....++|..+++.+++.+.+..|
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8899999999899999999999999999999999999999999999999999998777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.5e-08  Score=94.91  Aligned_cols=180  Identities=10%  Similarity=0.078  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCC---------chhHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG---------KAVLGF  174 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---------r~~~~~  174 (371)
                      .++.+.++.+........+....|. +.+-+|.+..+.|++.++..+...+..+++|.++||.-+         |..-.+
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            4566777777777777778888887 566799999999999999999999999999999998855         233335


Q ss_pred             HHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhh-hchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE-GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      +....+++.+..++.+..+.+.-+++ +..+++. |...+..+.-..+.. +++-+..+|+.+....+..+++|.+.+.+
T Consensus       339 ~~~~~ai~l~~l~~~~~~~~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTSDEHRLLAVIL-LTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHeeeecCCCcchHHHHH-HHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            55666666666666663222122222 2222222 222333333333434 68889999999999999999999999999


Q ss_pred             hcc---cCchhHHHHHhHHHHHHHHHHhhcccCCCC
Q 017461          254 IHR---FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       254 ~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                      ...   -.|+++|++.+++.++..++..++-..++.
T Consensus       417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~  452 (466)
T KOG2532|consen  417 VTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPA  452 (466)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHhchheeEeecCccc
Confidence            842   369999999999988887766666544333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.96  E-value=3.6e-08  Score=91.48  Aligned_cols=128  Identities=14%  Similarity=0.001  Sum_probs=96.3

Q ss_pred             hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH-HHHHHHHhhhhhccChhHHHHHHHHHHhh
Q 017461          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIATALTPVAAKLGLPFLLVVRVFMGIG  207 (371)
Q Consensus       129 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~~r~l~G~~  207 (371)
                      .+.+.+|.+..+.+++.....++..++.++.+++.||++++........+ ..+...........+.+.++++.++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            34455899999999999999999999999999999999833322222222 22222222221111567778888999999


Q ss_pred             hhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 017461          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (371)
Q Consensus       208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (371)
                      .+...+...++..|.+| +++|.+.++......+|..+++.+++.+....
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            99999999999999985 68899999999999999999999998886653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.94  E-value=3.5e-08  Score=94.24  Aligned_cols=139  Identities=14%  Similarity=0.060  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHhhhhhCCchhHHHHHHHHHHHHHHhhhhhc-------cChhHHHHHHHHHHhhhh
Q 017461          141 VGLIQSSFFWGYLLTQIAG----GIWADTVGGKAVLGFGVVWWSIATALTPVAAK-------LGLPFLLVVRVFMGIGEG  209 (371)
Q Consensus       141 ~~~~~s~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~  209 (371)
                      .+++.++..+...++.++.    +++.+|++..+.+.+|.++.+++.+..++...       .+.+++++.+++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5667777776666776666    66666666668889999999999988777752       135689999999999999


Q ss_pred             chhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc----------ccCchhHHHHHhHHHHHHHHHHhh
Q 017461          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       210 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      +..|...+++.+..|++.||+++|++.....+|..++..+.+....          ..+..+.|...+++++++.++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888887777666643221          113567787777766655544443

>PRK11462 putative transporter; Provisional

Probab=98.94  E-value=7.5e-08  Score=91.11  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=93.1

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      .+....++.+...-++...+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++..++..+.+..+.+.+++.-+
T Consensus       247 ~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (460)
T PRK11462        247 RGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIF  326 (460)
T ss_pred             HHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            33334444444332445566777888889999999999999999999988765555444444443433113334555567


Q ss_pred             HHHhhhhchhhhHHHHHhcccC-------CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          203 FMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +.|++.+...+...++++|..+       .++.|...+.......+|..+|+.++|.+.+..|+
T Consensus       327 l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        327 VIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7788877777766777777765       33346667777788999999999999988765555

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.94  E-value=1.1e-06  Score=82.10  Aligned_cols=240  Identities=9%  Similarity=0.029  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-----CcchHHHHHHHHHHHHHHH-HHHHHHhhhhhCCchhHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW-----NPATVGLIQSSFFWGYLLT-QIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      .++.+.+.+|+..+.+++    +-++.+.+.+     +.+.+.++-+...+...+. .++.+++++|++|++++-+....
T Consensus         8 k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~   83 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP   83 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence            444455555555554443    4445555544     3467888888777766666 89999999999999999988888


Q ss_pred             HHHHHHHhhhhh----cc-------------------------ChhHHHHHHHHHHhhhhchhh-hHHHHHhcccCCcch
Q 017461          179 WSIATALTPVAA----KL-------------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVAER  228 (371)
Q Consensus       179 ~~i~~~~~~~~~----~~-------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r  228 (371)
                      +.+..+++++.-    +.                         +.|...+..+...+-.....+ .-..+++|.+..++-
T Consensus        84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qa  163 (472)
T TIGR00769        84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEA  163 (472)
T ss_pred             HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            877777766651    00                         134445556666666566665 778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhc-------c-cCch----hHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHH
Q 017461          229 SRSLALVYSGMYLGSVTGLAFSPFLIH-------R-FGWP----SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEK  296 (371)
Q Consensus       229 ~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~-~gw~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (371)
                      .+..++++.+.++|.++++.+..++.+       . ..|.    ..+.+.++.++++.++... ..+....++.....++
T Consensus       164 kRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~  242 (472)
T TIGR00769       164 KRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWW-VNRNVLTDPRSYNPAL  242 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCccccchhh
Confidence            999999999999999999999888763       1 1242    2333333333433333333 3222221111111110


Q ss_pred             HHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 017461          297 KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVS  352 (371)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (371)
                         ..++++.+......++.++++|-++.+++...++....+.+....-..+.+.+
T Consensus       243 ---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~  295 (472)
T TIGR00769       243 ---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY  295 (472)
T ss_pred             ---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence               11111112223457788899999888888888877766666654445555543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=2.3e-09  Score=94.83  Aligned_cols=163  Identities=18%  Similarity=0.135  Sum_probs=130.4

Q ss_pred             HHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC--CchhHHHHHHHHHHHHHHhhhhhcc
Q 017461          116 CNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIATALTPVAAKL  192 (371)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~  192 (371)
                      .+.....+-+.++. +.|.+..+.+++|+..--..+.+.++..+.|.++||++  |-.....++++.++.+....+++  
T Consensus       282 ~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~--  359 (464)
T KOG3764|consen  282 SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT--  359 (464)
T ss_pred             ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh--
Confidence            34444555666666 67778877779999999999999999999999999999  54445566666777777788888  


Q ss_pred             ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCc------chHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      ++..+++-++..|++.+...........+....+      .-|...++...++.+|.++||.++|.+.+..|++|.-.+.
T Consensus       360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii  439 (464)
T KOG3764|consen  360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII  439 (464)
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence            9999999999999988877776666655555433      4467889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhc
Q 017461          267 GSLGTVWFTVWLSK  280 (371)
Q Consensus       267 ~~~~~~~~~~~~~~  280 (371)
                      ++..++-..++..+
T Consensus       440 g~~n~iyapvl~ll  453 (464)
T KOG3764|consen  440 GILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888776655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.92  E-value=6.4e-07  Score=81.39  Aligned_cols=224  Identities=11%  Similarity=0.097  Sum_probs=157.2

Q ss_pred             hhhhhhhhhh-cCCCcchHH-HHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHH
Q 017461          124 SIAILPMSAE-FNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (371)
Q Consensus       124 ~~~~~~~~~~-~~~~~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  201 (371)
                      ..+.|.+.+. .|++.+++. -+.-+..-.+....++...+.|.++.|++++++.+...+..++..+.+  +.+.+-+..
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q  101 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQ  101 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHH
Confidence            3445666665 788888864 455566777888889999999999999999999999999999999999  999999999


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC--chhHHHHHhHHHHHHHHHHhh
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~  279 (371)
                      ++-|++.+. ..+.++++=...++++-.++.+....+.-+|..++.++|..+....+  ++....+......+.+++.++
T Consensus       102 ~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  102 FFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999875 67788888888889999999999999999999999999998887433  445544444433344444333


Q ss_pred             cccCCCCC---CCCCCh------HHHH--HHhhhc----cCCCCc-----------ccchhhhhhcChhHHHHHHHHHHH
Q 017461          280 KAHSSPAE---DPQLRP------AEKK--LIVSSC----ASKEPV-----------KTIPWGLILSKPPVWALIVSHFCH  333 (371)
Q Consensus       280 ~~~~~~~~---~~~~~~------~~~~--~~~~~~----~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~  333 (371)
                       +|..++.   ++....      .+.+  ....+.    ++..+.           ....+++..++|.++...+-+.+.
T Consensus       181 -LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~a  259 (412)
T PF01770_consen  181 -LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFA  259 (412)
T ss_pred             -cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence             3433321   111000      0000  000000    000000           123455566788888888888888


Q ss_pred             HHHHHHHHHhhHHHHHHh
Q 017461          334 NWGTFILLTWMPTYYNQV  351 (371)
Q Consensus       334 ~~~~~~~~~~~~~~l~~~  351 (371)
                      ..+++.+..|......+.
T Consensus       260 tcgy~qv~nYvQ~LW~~v  277 (412)
T PF01770_consen  260 TCGYYQVINYVQSLWDTV  277 (412)
T ss_pred             HhHHHHHHHHHHHHHHhc
Confidence            888888888887777664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.91  E-value=1e-07  Score=87.91  Aligned_cols=151  Identities=14%  Similarity=0.081  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  187 (371)
                      .++..++......+.+....++.+. +|.++....+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++..
T Consensus       241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~  320 (467)
T COG2211         241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY  320 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555566666665443 566666777888888888888899999999999999999999999999999998


Q ss_pred             hhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccC-------CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc
Q 017461          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +.+..+.+.+++..++.++|.+...+...++++|..+       .+.-|...+......=+|.+++..+.|++.+..|+
T Consensus       321 f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         321 FTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             hhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8876578889999999999999999999999887764       22347778888888888999999888888765553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.88  E-value=8e-08  Score=85.61  Aligned_cols=164  Identities=14%  Similarity=0.177  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  184 (371)
                      +....++.|+...........++.+.++ .|++..+.+...+.+..+.++|.+++-++..|+...|.+.+..++..+.++
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3344555666666666777777776666 888999999999999999999999999999999999999999999998899


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  264 (371)
                      ..+++.  +.+. +.+-++.|+..+..+|...+...+..+  +.....|..-....+|+++-|++.|++.|..|-...+.
T Consensus       318 ~~~l~~--g~v~-~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         318 AVALIG--GVVA-LYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHhc--ChHH-HHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            999998  7544 445688899999999999999999997  34445555566777889999999999999998887777


Q ss_pred             HHhHHHHHHH
Q 017461          265 SFGSLGTVWF  274 (371)
Q Consensus       265 ~~~~~~~~~~  274 (371)
                      +...+|.+..
T Consensus       393 ~~pllc~lyV  402 (422)
T COG0738         393 IVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.84  E-value=2.3e-07  Score=88.37  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhCCchh-------HHHHHHHHHHHHHHhh-----hhh---ccChhHHHHHHHHHH
Q 017461          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-------LGFGVVWWSIATALTP-----VAA---KLGLPFLLVVRVFMG  205 (371)
Q Consensus       141 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~~-----~~~---~~~~~~l~~~r~l~G  205 (371)
                      .+++.+...+...+..++.+++.||+|+|+.       +.+|.++.+++.+..+     ++.   ..+.|+++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4566667777788999999999999999974       7778777777764321     221   126788889999999


Q ss_pred             hhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc----------ccCchhHHHHHhHHHHHHHH
Q 017461          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~gw~~~f~~~~~~~~~~~~  275 (371)
                      +|.++..+....++.+..|++.++.++|++.....+|..+|..++.....          .-...+.|...++..+++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865531          01245667777766666655


Q ss_pred             HHhhc
Q 017461          276 VWLSK  280 (371)
Q Consensus       276 ~~~~~  280 (371)
                      +++..
T Consensus       471 ~~~~~  475 (489)
T PRK10207        471 VMALM  475 (489)
T ss_pred             HHHHH
Confidence            55443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.84  E-value=1.4e-11  Score=116.50  Aligned_cols=165  Identities=13%  Similarity=0.045  Sum_probs=114.0

Q ss_pred             hhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh--h--hhccC---
Q 017461          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP--V--AAKLG---  193 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~---  193 (371)
                      .......+.+.+..+.+..  -+......+...++.++...+.||+|||++++++.++.+++.+..+  .  ..+.+   
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344556677777777666  2222233455556777778999999999999999999888877664  1  11100   


Q ss_pred             hhHHHHHHHHHHhhhh-chhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHH
Q 017461          194 LPFLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (371)
Q Consensus       194 ~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~  272 (371)
                      -...++.-.+..++.+ +..+....+.+|.+|.+.|+++.++......++.++++.+...+.+..+-...+++.++++++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            1112222222222222 344666688899999999999999999999999999998888887766634567777778888


Q ss_pred             HHHHHhhcccCCCCC
Q 017461          273 WFTVWLSKAHSSPAE  287 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~  287 (371)
                      ..+..+++.||+..+
T Consensus       428 ~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  428 AIIFVYFFLPETKGK  442 (451)
T ss_pred             HHhheeEEEeeCCCC
Confidence            888888888987654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.82  E-value=7.6e-09  Score=93.22  Aligned_cols=184  Identities=10%  Similarity=-0.014  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHH--------HHH-HHHHHHHHHHHHHHHhhhhhCCchhHHH
Q 017461          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGL--------IQS-SFFWGYLLTQIAGGIWADTVGGKAVLGF  174 (371)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~  174 (371)
                      ..++..+..+|+.....+..+.....+.+.+|+.+.....        ... +-..++..+-++...++|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5677777888888788888888888888888875554433        111 1122333355677788999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcc--ChhHHHHHHHHHHhhhh-chhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHH
Q 017461          175 GVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (371)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~--~~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (371)
                      |.+++++..+..++..+.  +...++++..+..+... +.......+-+|.||.+.|+..-|+..+..-.|+++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            999999999999888721  12233333333333222 122333456689999999999999999999999999999999


Q ss_pred             HHhc-----ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCC
Q 017461          252 FLIH-----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (371)
Q Consensus       252 ~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      .+.+     ..|.|++|++.+.++++..+..++ .||+..+.
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~  504 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKS  504 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccC
Confidence            9988     778999999999888776665554 45655443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.81  E-value=2.8e-08  Score=89.57  Aligned_cols=131  Identities=15%  Similarity=0.115  Sum_probs=104.0

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh----hCCchhHH-HHHHHHHHHHHHhhhhhcc-----
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLG-FGVVWWSIATALTPVAAKL-----  192 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~-~~~~~~~i~~~~~~~~~~~-----  192 (371)
                      =....+++.++.|++....+.+.-..-+...+.+|+.|..+||    |||||.++ .+.++.+++.++..++.+.     
T Consensus        51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg  130 (498)
T KOG0637|consen   51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG  130 (498)
T ss_pred             HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence            3455778889999999999999998899999999999999995    89887766 5556677777777776511     


Q ss_pred             ----------ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHH-HHHHHHHHHHHHHHHHHHhHHHH
Q 017461          193 ----------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSR-SLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       193 ----------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                                ....++++..+.-++.-.....+-+++.|....+++.+ +++.+....++|+.+|..+++++
T Consensus       131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence                      13345556666667766778889999999998777777 99999999999999998888743

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.81  E-value=3.2e-08  Score=90.68  Aligned_cols=119  Identities=18%  Similarity=0.103  Sum_probs=89.2

Q ss_pred             hhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhcc--ChhHHHH
Q 017461          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLLV  199 (371)
Q Consensus       123 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~l~~  199 (371)
                      .....|. +.+.+|.+..+.+++.+...++..++.+++|+++||+|+|+.+..+..+.+.+.++..+....  +.+.+++
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            3344444 556789999999999999999999999999999999999988888777776666655544311  3444455


Q ss_pred             HHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHH
Q 017461          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG  242 (371)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  242 (371)
                      ..++.+++.|.......+++.+.+| +++|.+.|+.....++|
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555566666666667778888885 79999999988877765

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.76  E-value=7.2e-07  Score=70.34  Aligned_cols=109  Identities=13%  Similarity=0.172  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcc
Q 017461          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW  222 (371)
Q Consensus       143 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  222 (371)
                      .-.++......++.++.+.+.+++|.|+.+++|.+.+.+-.... +-+  +.+.++.+-++.|++.+..|++...++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            34556667778888999999999999999999999988666554 455  788999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      ..++++++..+++......+.++|.++.-++.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888888887765553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.76  E-value=6.1e-07  Score=80.67  Aligned_cols=151  Identities=13%  Similarity=0.074  Sum_probs=125.0

Q ss_pred             hhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh-hhCCchhHHHHHHHHHHHHHHhhhhhc-cChhHHHHHHHHHH
Q 017461          128 LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMG  205 (371)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~r~l~G  205 (371)
                      |+=.+-||++..+...+......|..++-...|++.. |.++++...+|+.+.+++..+..++.. .+.+.+..+-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            3445679999999999999999999999999999888 678888888898888888766444321 17889999999999


Q ss_pred             hhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc----------cCchhHHHHHhHHHHHHHH
Q 017461          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------FGWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~gw~~~f~~~~~~~~~~~~  275 (371)
                      ++.|.+.....+...+...+++.|..+|.++....++..+|..++|.+.|.          .+|-.+|.+.+++.++..+
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987662          2466777777766555554


Q ss_pred             HHh
Q 017461          276 VWL  278 (371)
Q Consensus       276 ~~~  278 (371)
                      +..
T Consensus       393 ll~  395 (403)
T PF03209_consen  393 LLG  395 (403)
T ss_pred             HHH
Confidence            443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.74  E-value=7.5e-07  Score=85.62  Aligned_cols=181  Identities=15%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  185 (371)
                      ...+.+..+.............+.+-+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            33444444544455555666677788888876554 55566667777788888899999999999999999999999988


Q ss_pred             hhhhhcc-----------ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          186 TPVAAKL-----------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       186 ~~~~~~~-----------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      ++.....           .+..+....+.......+..+....+.+|.+|.+-|+++.++......+...+-......+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765311           12222333333333334455666778899999999999999977766665544444444444


Q ss_pred             cccCchhHHHHHhHHHHHHHH-HHhhcccCCCCC
Q 017461          255 HRFGWPSVFYSFGSLGTVWFT-VWLSKAHSSPAE  287 (371)
Q Consensus       255 ~~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~~  287 (371)
                      +..++...|...+.++.+..+ .++++.||+...
T Consensus       456 ~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  456 EALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             HhccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            444456677777777777777 677778876554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.73  E-value=1e-06  Score=82.38  Aligned_cols=154  Identities=9%  Similarity=-0.001  Sum_probs=102.3

Q ss_pred             hhhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh----hhccChh
Q 017461          121 VNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV----AAKLGLP  195 (371)
Q Consensus       121 ~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~  195 (371)
                      ..+....|.+ ++.+|.+..+.++.......+..++..+.+++.++.++++.+.....+..++.++...    .. .+++
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-~~~~  313 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP-HVWL  313 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc-ccHH
Confidence            3444556654 5557999999999988888888888888888775555544443333333333333222    12 1444


Q ss_pred             HHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHH
Q 017461          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~  275 (371)
                      .++++.++.|+|.+...+......-.. ....+|++.++.+.....+..+++.+++++.++ +-++.|...+++..+...
T Consensus       314 ~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~  391 (413)
T PRK15403        314 WSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVV  391 (413)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence            567788888999888877776533221 233479999999999888899999999988775 556777766665555444


Q ss_pred             HH
Q 017461          276 VW  277 (371)
Q Consensus       276 ~~  277 (371)
                      ..
T Consensus       392 ~~  393 (413)
T PRK15403        392 FT  393 (413)
T ss_pred             HH
Confidence            43

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.70  E-value=1e-07  Score=66.11  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             HHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChh
Q 017461          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP  195 (371)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  195 (371)
                      .+..++.+.+++|.++++.++|.++.|++.+.+++|+.+|.+...++.++..+++.+..+.++..+..+.+++.+  +.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~--~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH--SFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--chH
Confidence            356788899999999999999999999999999999999999999999998889999999999999999999998  765


Q ss_pred             HH
Q 017461          196 FL  197 (371)
Q Consensus       196 ~l  197 (371)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            44

Note that many members are hypothetical proteins.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.64  E-value=1.1e-06  Score=82.58  Aligned_cols=145  Identities=14%  Similarity=-0.019  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhCC-chhHHHHHHHHHHHHHHhhhhhcc--C-----------------hhHHHHHH
Q 017461          142 GLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALTPVAAKL--G-----------------LPFLLVVR  201 (371)
Q Consensus       142 ~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~--~-----------------~~~l~~~r  201 (371)
                      .+....+.+...+.+++.-++.+++|+ |++..++.++.+++.+...+....  |                 .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            344556666666888888999999995 677788888888888777655410  1                 37788889


Q ss_pred             HHHHhhhhchhhhHHHHHhcccCC--cchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC--chhHHHHHhHHHHHHHHHH
Q 017461          202 VFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       202 ~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~  277 (371)
                      .+.|+..+.....-++++++..++  ++.|..+|+.+.+..+..++..+..|.+.+.+|  -.+.+.+.++..++..++.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984  455999999999999999999988888666554  5677888888888888888


Q ss_pred             hhcccCCCC
Q 017461          278 LSKAHSSPA  286 (371)
Q Consensus       278 ~~~~~~~~~  286 (371)
                      ++.+|+.+.
T Consensus       468 ~~~~~~~~~  476 (477)
T TIGR01301       468 LILLPRPRV  476 (477)
T ss_pred             HHhCCCCCC
Confidence            888877543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.59  E-value=3.1e-06  Score=81.04  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhh-hcCCCc---chHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh-HHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNP---ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWW  179 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~  179 (371)
                      .+.+.++..++.++.++....+.|.... -|+-+.   ...++....+.++..+++++.|.+..+++|-|. ++++.+++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            3444445555565555566666666433 455443   357888888899999999999999998886554 45777677


Q ss_pred             HHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHH
Q 017461          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (371)
Q Consensus       180 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (371)
                      .++..+++..+..|....+..-++.|+|.|.........+.-..|.++-|.+.|+....-.+|+.+|..+..
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            665555544433355666778899999999988888888888889999999999999999999888876654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.46  E-value=1.9e-05  Score=74.66  Aligned_cols=141  Identities=11%  Similarity=0.033  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhCC--ch----h-HHHHHHHHHHHHHHhhhhhc-------cChhHHHHHHHHHH
Q 017461          140 TVGLIQSSFFWGYLLTQIAGGIWADTVGG--KA----V-LGFGVVWWSIATALTPVAAK-------LGLPFLLVVRVFMG  205 (371)
Q Consensus       140 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr--r~----~-~~~~~~~~~i~~~~~~~~~~-------~~~~~l~~~r~l~G  205 (371)
                      ..+|+.++..+..++.+|+.+++-.|.++  |.    . +.+|+++.+++.+.+.++..       .+.+++++..++++
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            36788888889888999988888777743  21    1 66788888888766654321       26788999999999


Q ss_pred             hhhhchhhhHHHHHhcccCCcchHHHHHHHHHHH-HHHHHHHHHhHHHHhcc------------cCchhHHHHHhHHHHH
Q 017461          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM-YLGSVTGLAFSPFLIHR------------FGWPSVFYSFGSLGTV  272 (371)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~~~------------~gw~~~f~~~~~~~~~  272 (371)
                      +|.-+..|...+++++..|++.||+++|++.... .+|..++..+++.....            ..+...|...+...++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997643 67777777766655311            1245567777776665


Q ss_pred             H-HHHHhhc
Q 017461          273 W-FTVWLSK  280 (371)
Q Consensus       273 ~-~~~~~~~  280 (371)
                      + .++.+.+
T Consensus       469 ~~~~~~~~~  477 (493)
T PRK15462        469 CVGVVLMIW  477 (493)
T ss_pred             HHHHHHHHH
Confidence            5 4444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.4e-06  Score=82.07  Aligned_cols=161  Identities=14%  Similarity=0.138  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh----hCCchhHHHHHHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLGFGVVWWS  180 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~~~~  180 (371)
                      ++..++..++.....+.+...+|.+.++ .|.+..+.+.+.+.+.++.+++.+++|.++||    ..+|........++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4455566666667777788888887777 56899999999999999999999999999999    677777666665555


Q ss_pred             HHH-HHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchH-HHHHHHHHHHHHHHHH-HHHhHHHHhccc
Q 017461          181 IAT-ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS-RSLALVYSGMYLGSVT-GLAFSPFLIHRF  257 (371)
Q Consensus       181 i~~-~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~g~~~-g~~~~~~l~~~~  257 (371)
                      +.. +......  +.......-+..+.+.+...+.....+++...+..|. ...+.+..+.+.++++ ++...+.....+
T Consensus       355 ~~g~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y  432 (495)
T KOG2533|consen  355 IIGAISLLAAA--VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY  432 (495)
T ss_pred             HHHHHHHHhhc--cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence            444 4444443  3444444444444555556677777777777655443 3344444444444444 444444455567


Q ss_pred             CchhHHHHHhH
Q 017461          258 GWPSVFYSFGS  268 (371)
Q Consensus       258 gw~~~f~~~~~  268 (371)
                      +|...|.....
T Consensus       433 ~~~~~f~~~~~  443 (495)
T KOG2533|consen  433 GWGAVFYMLVA  443 (495)
T ss_pred             hhhhHHHHHHH
Confidence            89888844433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.44  E-value=1.8e-06  Score=59.37  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          111 SAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      ..+++.......+.+.++...++.|++..++|.+.++..+...++.+++|.++||+|+++.++.+..++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            344455555666778888888899999999999999999999999999999999999999888776654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.42  E-value=0.00013  Score=68.74  Aligned_cols=250  Identities=9%  Similarity=0.017  Sum_probs=145.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHH-HHHHHHHHHHHhhhhhCCchhHHHH
Q 017461           97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFG  175 (371)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~  175 (371)
                      +-.+..+..++.+.+.+|+..+.++.+-..-..+.-.- ...+.+.++=....+ +..+...+..++++++++.+++-+.
T Consensus        17 pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~-~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~   95 (491)
T PF03219_consen   17 PIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTA-QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII   95 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            33445555666666777766666554443322211111 145566666553333 5566778899999999999998888


Q ss_pred             HHHHHHHHHHhhhhh-------c----------------------cChhHHHHHHHHHHhhhhchhh-hHHHHHhcccCC
Q 017461          176 VVWWSIATALTPVAA-------K----------------------LGLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPV  225 (371)
Q Consensus       176 ~~~~~i~~~~~~~~~-------~----------------------~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~  225 (371)
                      ...+.....++++.-       +                      .+.|.+.+..++.-+-.....+ .-..+..|.++.
T Consensus        96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~  175 (491)
T PF03219_consen   96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV  175 (491)
T ss_pred             HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            777777666665531       0                      0234444445555554444444 468889999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHHHHhc---------ccCchhHHHHH----hHHHHHHHHHHhhcccCCCCCCCCCC
Q 017461          226 AERSRSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFYSF----GSLGTVWFTVWLSKAHSSPAEDPQLR  292 (371)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~gw~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (371)
                      ++-.+..++++.+.++|.+++..+...+.+         ...|...+...    .+.+++...+ ..+..+...+++...
T Consensus       176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~~~vl~~~~~~  254 (491)
T PF03219_consen  176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL-YRYMNKNVLTDPRFY  254 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCccccc
Confidence            999999999999999999999988888877         12354333222    1222222222 222222111111110


Q ss_pred             hHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 017461          293 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV  351 (371)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (371)
                         +....+++++++......++.++|+|-+..+++...++....+.+....-..+++.
T Consensus       255 ---~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~  310 (491)
T PF03219_consen  255 ---PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQL  310 (491)
T ss_pred             ---hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00000111111222245677888899988888888887777777666555555553

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.37  E-value=3.3e-05  Score=74.51  Aligned_cols=141  Identities=13%  Similarity=0.019  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccCh-hHHHHHHHHHHhhhhchhhhHHHHHhcccCCcc
Q 017461          149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE  227 (371)
Q Consensus       149 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~  227 (371)
                      ......+....+.+.|++|||.....+.++..++.++.++...... +...+...+..++.+..+.....+.+|.+|...
T Consensus       360 ~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~  439 (521)
T KOG0255|consen  360 GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV  439 (521)
T ss_pred             HHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            3355666666789999999999999999999999999999873222 235666666667777777777999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCC
Q 017461          228 RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ  290 (371)
Q Consensus       228 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (371)
                      |..+.+.......+|.+++|.+...... ......+.+.+.++.+..++...+.||+......
T Consensus       440 r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~  501 (521)
T KOG0255|consen  440 RNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLP  501 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence            9999999999999999999988866554 2223333334666666666666777887665543

>PTZ00207 hypothetical protein; Provisional

Probab=98.35  E-value=7.1e-06  Score=78.94  Aligned_cols=173  Identities=6%  Similarity=-0.055  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhc-CCCc-chHHH-HHHHHHHHHHHHHHHHHHhhhhhC--------CchhHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEF-NWNP-ATVGL-IQSSFFWGYLLTQIAGGIWADTVG--------GKAVLGF  174 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~s~~~~~~~~~~~~~g~l~dr~G--------rr~~~~~  174 (371)
                      ++++++.+++.......+..-+.+|.+.+ |.+. .+... +.+++.++..+|.+..|.+....-        .|+..+.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            44555555555555445555577788888 6522 32222 778888888888888888772211        1223333


Q ss_pred             HHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 017461          175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG-LAFSPFL  253 (371)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-~~~~~~l  253 (371)
                      ...++.++.+++++.-  ....+.+.-++.|++.|..+++...+++|+|. |+-|+-..+......+|..+- -.+.|.+
T Consensus       435 ~~~~~~~~~lll~~~~--p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~  511 (591)
T PTZ00207        435 IPSVCIITMLTLFLTL--PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW  511 (591)
T ss_pred             HHHHHHHHHHHHHHHC--CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            3333677777777765  44689999999999999999999999999998 999999999999999988776 5667777


Q ss_pred             hccc----------C---chhHHHHHhHHHHHHHHHHhhcc
Q 017461          254 IHRF----------G---WPSVFYSFGSLGTVWFTVWLSKA  281 (371)
Q Consensus       254 ~~~~----------g---w~~~f~~~~~~~~~~~~~~~~~~  281 (371)
                      .|..          |   ++.+|++.+.++++.+++.....
T Consensus       512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            6531          2   68899999999888877765543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.31  E-value=1.5e-05  Score=70.69  Aligned_cols=141  Identities=17%  Similarity=0.125  Sum_probs=119.3

Q ss_pred             HHHHHhhhhhhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC--CchhHHHHHHHHHHHHHHhhhh
Q 017461          113 FLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIATALTPVA  189 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~  189 (371)
                      .++.......+....+.+ .+.+|.++.+.|-+.+...++.++.+....+..||..  -+-.+..++.++.-..++.+.+
T Consensus       270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~  349 (451)
T KOG2615|consen  270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA  349 (451)
T ss_pred             HHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc
Confidence            333333333344433443 4779999999999999999999999999999999998  7888888888888888888888


Q ss_pred             hccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      +  ....+.++-.+-.+..+...+....++....|.++||.++|+......++-++||+++|.+..
T Consensus       350 ~--~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  350 R--TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             c--cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            8  788888999999999888888899999999999999999999999999999999999988765

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.26  E-value=1.4e-05  Score=74.92  Aligned_cols=126  Identities=17%  Similarity=0.241  Sum_probs=112.0

Q ss_pred             hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH-HhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHH
Q 017461          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGG-IWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG  205 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  205 (371)
                      .-++...++++..+.+.+.+.......+++.+.. .+...+|-|+++.+|++.-.+..++.++++  +.|+++...++.+
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~  342 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVA  342 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHH
Confidence            3446778999999999998888888888888777 778889999999999999999999999999  9999999988888


Q ss_pred             hhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      +. +...+...++++.+..++++|++.++....-++..+++|.+-+.+..
T Consensus       343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            76 55789999999999999999999999999999999999988876643

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.20  E-value=0.00021  Score=65.14  Aligned_cols=135  Identities=13%  Similarity=0.097  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhc
Q 017461          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (371)
Q Consensus       142 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  221 (371)
                      +.+.-+..+-..+..+.+.++.+|+..+.=+.++.++++++.++.++++  +.+.-+++-++.+++.|........+.+ 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            3455555566677777888889998876667777788899999999999  9999999999999999988887777644 


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCc--hhHHHHHhHHHHHHHHHHhhcccCC
Q 017461          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~  284 (371)
                      .+++    ..++-++.+.+.++++|+..-..+.+ .|+  |..+++...+.++..+..++.++.+
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            5643    35678888888889999887777766 665  7788888877776666666555543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.20  E-value=0.0015  Score=60.42  Aligned_cols=242  Identities=7%  Similarity=-0.013  Sum_probs=149.4

Q ss_pred             cccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC---CcchHHHHHHHHHH-HHHHHHHHHHHhhhhhCCchh
Q 017461           96 WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW---NPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAV  171 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~  171 (371)
                      |+-.+..+..++.+.+.+++..+.++.+    -.+.+.+.+   .++.++++=+..-+ +..+..++.+++.+++.+.++
T Consensus        19 wpi~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~v   94 (509)
T COG3202          19 WPIRRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKV   94 (509)
T ss_pred             eeccHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHH
Confidence            4455556666666666666666654443    344555543   46667787777777 778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhc------------------------------cChhHHHHHHHHHHhhhhchhh-hHHHHHh
Q 017461          172 LGFGVVWWSIATALTPVAAK------------------------------LGLPFLLVVRVFMGIGEGVAMP-AMNNILS  220 (371)
Q Consensus       172 ~~~~~~~~~i~~~~~~~~~~------------------------------~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~  220 (371)
                      +-+.+..+....+++++.--                              .+.|..-+...+.-+-.....+ .-.....
T Consensus        95 F~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN  174 (509)
T COG3202          95 FYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN  174 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888888777777766420                              0225555555555555455444 5577889


Q ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc-C---------chhHHHHHhHHHHHHHHHHhhcccCCCCCCCC
Q 017461          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-G---------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ  290 (371)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g---------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (371)
                      |....++-.+..++++.+.+++..++..+..++..+. .         .+..+.+.+..++++..+..+.-+.....+.-
T Consensus       175 eitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f  254 (509)
T COG3202         175 EITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLF  254 (509)
T ss_pred             HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence            9999999999999999999999999998888887631 1         23333444433344333333322222211110


Q ss_pred             CChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 017461          291 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (371)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (371)
                      .   .+.....+++..+-.....++.++|+|-++.+.+...+++.+.+.+....
T Consensus       255 ~---~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~w  305 (509)
T COG3202         255 Y---LRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVW  305 (509)
T ss_pred             h---HHHhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0   00000000011111123456778888888888888777777666655433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.17  E-value=0.00026  Score=65.60  Aligned_cols=255  Identities=12%  Similarity=0.042  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      .+....++...+.-++....+.+..+.. -+--..+...-+-.+..+++++..|.+.||..|.+++..+.++--++..+.
T Consensus         6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s   85 (432)
T PF06963_consen    6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS   85 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence            4555666666666777777777655553 233334555556667788999999999999999998877765543333222


Q ss_pred             hhh------hcc----ChhHHHHHH---HHHHhhhhch-hhhHHHHHhcc----c--CCcchHHHHHHHHHHHHHHHHHH
Q 017461          187 PVA------AKL----GLPFLLVVR---VFMGIGEGVA-MPAMNNILSKW----V--PVAERSRSLALVYSGMYLGSVTG  246 (371)
Q Consensus       187 ~~~------~~~----~~~~l~~~r---~l~G~~~~~~-~~~~~~~i~~~----~--~~~~r~~~~~~~~~~~~~g~~~g  246 (371)
                      +..      ...    +-+....+.   .+.|.-.-.. .....++--||    .  +++.+.+.++...-.=.+..+++
T Consensus        86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla  165 (432)
T PF06963_consen   86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA  165 (432)
T ss_pred             HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            211      100    012222221   1222111111 11111222233    2  24445566666666666789999


Q ss_pred             HHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcc----cCCCCCCCCCChHHHHHHhhh----ccCCC-----------
Q 017461          247 LAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA----HSSPAEDPQLRPAEKKLIVSS----CASKE-----------  307 (371)
Q Consensus       247 ~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------  307 (371)
                      |++.|.+.+..+.+...++.++..++..++=+++.    +..|.-..++..++.+.....    .....           
T Consensus       166 Pl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (432)
T PF06963_consen  166 PLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPL  245 (432)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHHH
Confidence            99999999988988888888888777665433322    122211111111000000000    00000           


Q ss_pred             CcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          308 PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       308 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                      .....+|+..++.+.+.. .++..+.++...++...+..|+... |+++...|.+=.
T Consensus       246 ~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~  300 (432)
T PF06963_consen  246 RTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRG  300 (432)
T ss_pred             HHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHH
Confidence            011345666666665554 4444444445666777788888884 999998877643

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.14  E-value=2.5e-05  Score=71.87  Aligned_cols=110  Identities=17%  Similarity=0.284  Sum_probs=89.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhcc-------ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCc---chHHHHHHHHHHH
Q 017461          170 AVLGFGVVWWSIATALTPVAAKL-------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGM  239 (371)
Q Consensus       170 ~~~~~~~~~~~i~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  239 (371)
                      ++++++.+++.+|.++..++...       +.+.++++.++.++|.|+.-+...++++|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57788999999999885554311       2367899999999999999999999999999865   4667788899999


Q ss_pred             HHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhh
Q 017461          240 YLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       240 ~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  279 (371)
                      ++|..++..+.+++.+++||.+.|++.++..++..+.++.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988877766665554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00014  Score=67.51  Aligned_cols=110  Identities=11%  Similarity=0.109  Sum_probs=94.9

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHH
Q 017461          141 VGLI-QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL  219 (371)
Q Consensus       141 ~~~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  219 (371)
                      .|.. .++-...+.++.++.+.+.|+.|.|+.++++........+.+.+.   |-+.++++..+.|+|.+..|...-.++
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~yl  127 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYL  127 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceeh
Confidence            3443 667778889999999999999999999999999999888887666   567889999999999999999999999


Q ss_pred             hcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      +|..+++.+.+..++.......+.++|..+...+
T Consensus       128 t~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  128 TSNSTRETIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hhcCChhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            9999999999999998888888888876555443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.01  E-value=0.00053  Score=61.07  Aligned_cols=243  Identities=10%  Similarity=-0.020  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhh-----hhCCchhHHH-HHHHH
Q 017461          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLGF-GVVWW  179 (371)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~  179 (371)
                      +..+.+.+.+.+.-..... .+|.+.+.-|.|.++.+....++.  --..-+++.++.|     |+||||.-++ +..+.
T Consensus        33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll  109 (510)
T KOG3574|consen   33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL  109 (510)
T ss_pred             HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence            4444555666666666666 789988888888777765544332  1234578899999     9999987553 22333


Q ss_pred             HHHHHHhhhhhc---------cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhH
Q 017461          180 SIATALTPVAAK---------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS  250 (371)
Q Consensus       180 ~i~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  250 (371)
                      +..+++.+...+         .+...+....++.-+..+.-..+.-.+.-.+..+++.|.+.-....+.+.|.+++..+-
T Consensus       110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            333333332210         13333444556666666766777777777777788888777666666666666665443


Q ss_pred             HHHhc-------ccCc---------hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchh
Q 017461          251 PFLIH-------RFGW---------PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW  314 (371)
Q Consensus       251 ~~l~~-------~~gw---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (371)
                      -.+.+       ...|         ...++..+.+.++...+..++.+|++....+    |.+.       .....-.-+
T Consensus       190 LaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~----e~~~-------~i~~~yk~l  258 (510)
T KOG3574|consen  190 LALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE----ELEL-------GIHESYKLL  258 (510)
T ss_pred             eEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh----hhhc-------CHHHHHHHH
Confidence            22222       0122         2234445555566656655555544333111    0000       000001234


Q ss_pred             hhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhh
Q 017461          315 GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETV  363 (371)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~  363 (371)
                      +++++-|....++......-.++.+-....+.-+.+ +|.+..+.+++.
T Consensus       259 ~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~  306 (510)
T KOG3574|consen  259 RDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIA  306 (510)
T ss_pred             HHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeee
Confidence            567778888888888888888888888888888888 699998887765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.00  E-value=0.00028  Score=65.25  Aligned_cols=141  Identities=17%  Similarity=0.137  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhCCc-------hhHHHHHHHHHHHHHHhhhh-------h-ccChhHHHHHHHHH
Q 017461          140 TVGLIQSSFFWGYLLTQIAGGIWADTVGGK-------AVLGFGVVWWSIATALTPVA-------A-KLGLPFLLVVRVFM  204 (371)
Q Consensus       140 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~-------~-~~~~~~l~~~r~l~  204 (371)
                      ..+|..+...+.-++.+|+..++..+.+++       .=+.+|+.+++.+.++....       . ..+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            457788888888889998888888886554       22446666666666665554       1 13689999999999


Q ss_pred             HhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHH------HhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF------LIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                      ++|.=+..|.+.+++....|+.-.+.+++++......|..++..+.+.      ..+...-...|+..+...++..++.+
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888877773      22333455677777777776666555


Q ss_pred             hc
Q 017461          279 SK  280 (371)
Q Consensus       279 ~~  280 (371)
                      ..
T Consensus       485 ~~  486 (498)
T COG3104         485 LL  486 (498)
T ss_pred             Hh
Confidence            43

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00031  Score=67.64  Aligned_cols=156  Identities=14%  Similarity=0.139  Sum_probs=124.1

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHHHHHHHHHhhhhhc----------
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAK----------  191 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~----------  191 (371)
                      ...++.++.++++.+...+.-..+.+.-...+..++++.++|-| ||-+++.++.++..+|.++..++..          
T Consensus        57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            45677788899998888888888888888888999999999975 8889999999998888655444320          


Q ss_pred             ----------cC---hhHHHHHHHHHHhhhhchhhhHHHHHhcccC---Cc---chHHHHHHHHHHHHHHHHHHHHhHHH
Q 017461          192 ----------LG---LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP---VA---ERSRSLALVYSGMYLGSVTGLAFSPF  252 (371)
Q Consensus       192 ----------~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (371)
                                .+   ...+..+.-+..+|.|+.-+...++-+|.++   ++   .+...+.++....++|..++..+..+
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence                      00   2356666778888999999999999999998   22   22367888899999999999998888


Q ss_pred             HhcccCchhHHHHHhHHHHHHHHHHh
Q 017461          253 LIHRFGWPSVFYSFGSLGTVWFTVWL  278 (371)
Q Consensus       253 l~~~~gw~~~f~~~~~~~~~~~~~~~  278 (371)
                      .-++.||.+.|.+..+..++..++++
T Consensus       217 iq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  217 IQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hhhcccceeeccHHHHHHHHHHHHHH
Confidence            88899999999988877666655554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.91  E-value=0.0003  Score=64.18  Aligned_cols=115  Identities=14%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH--HHH---HHHHhhhhhccChhHHHHHHHHHHhhh
Q 017461          134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW--WSI---ATALTPVAAKLGLPFLLVVRVFMGIGE  208 (371)
Q Consensus       134 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~--~~i---~~~~~~~~~~~~~~~l~~~r~l~G~~~  208 (371)
                      +.-..+++.+....|.+|-.++.--...+  |+  |++.+...+-  ..+   ...+.-+.+  +.|.+++.-+..|+..
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fip--si~ivf~lif~eGLlG  349 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIP--SIWIVFVLIFYEGLLG  349 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhh
Confidence            44346778888888888877775433222  33  3333333222  222   222333456  7899999999999999


Q ss_pred             hchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017461          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (371)
Q Consensus       209 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (371)
                      |..++-....+.|-.++++|..++|....+-++|.+++.+++-.+-
T Consensus       350 Ga~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  350 GASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988886654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.00012  Score=61.93  Aligned_cols=132  Identities=16%  Similarity=0.196  Sum_probs=92.0

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHH
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  202 (371)
                      -++..-.+-+.||....++|.+........++...+.|-++|+-|||+.-+.-++.+.++++. -.++  .|-.++++|+
T Consensus        56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSp--qYkVLmVGR~  132 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSP--QYKVLMVGRV  132 (454)
T ss_pred             cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCC--ceEEEeehhh
Confidence            355555677888999999998888888888899999999999999999766555544443332 2345  7889999999


Q ss_pred             HHHhhhhchhhhHHHH-HhcccCCcchHHHHHHH--------HHHHHHHHHHHHHhHHHHhcccCc
Q 017461          203 FMGIGEGVAMPAMNNI-LSKWVPVAERSRSLALV--------YSGMYLGSVTGLAFSPFLIHRFGW  259 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~--------~~~~~~g~~~g~~~~~~l~~~~gw  259 (371)
                      +-|+..+..+.+.-++ ++|.-  ++|+.-.-+.        ..+.++-.+++.+.+..+.+.++.
T Consensus       133 LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~sl  196 (454)
T KOG4332|consen  133 LGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSL  196 (454)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence            9999999988887664 56664  3343222221        233444455666666667776543

>PRK03612 spermidine synthase; Provisional

Probab=97.81  E-value=0.0027  Score=60.92  Aligned_cols=144  Identities=17%  Similarity=0.164  Sum_probs=86.8

Q ss_pred             hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH---HHHHHhhhhhc--cC-hhHHHHHHHH
Q 017461          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALTPVAAK--LG-LPFLLVVRVF  203 (371)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~~~~--~~-~~~l~~~r~l  203 (371)
                      +.--+|-+....+.+.+++.+|.++|+.+++++.++.-++.. .+-..+..   ++..+......  .. ...++...++
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678788888999999999999999999988744322222 11111111   11111111110  01 1223334566


Q ss_pred             HHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh-cccCchhHHHHHhHHHHHHHH
Q 017461          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFGWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~gw~~~f~~~~~~~~~~~~  275 (371)
                      .|+..|...|....+..+.. .++-+...|-......+|.++|.++.+++. ..+|-....++.+.+.+++.+
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            77777877777777665543 233567788889999999999999988754 456754444455555544443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.69  E-value=0.00011  Score=66.83  Aligned_cols=172  Identities=10%  Similarity=-0.065  Sum_probs=113.4

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCC-chhHHHHHHHHHHHHHHh-hhhh
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALT-PVAA  190 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~-~~~~  190 (371)
                      +.......+.+...+......-|.+....|++.....++.++++.+.|.+.||... |.++++......++.... .+..
T Consensus       275 ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~  354 (480)
T KOG2563|consen  275 YGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL  354 (480)
T ss_pred             HhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333334445555554455556677889999999999999999999999999864 455555555555553222 2221


Q ss_pred             c-cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC---chh-HHHH
Q 017461          191 K-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPS-VFYS  265 (371)
Q Consensus       191 ~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---w~~-~f~~  265 (371)
                      . ...+.++..-.+.|++..+..|...-+-.|..-|..-+.-.|+......+-+.+-.++.+.+.+..+   |.+ .-+.
T Consensus       355 ~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~  434 (480)
T KOG2563|consen  355 FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIF  434 (480)
T ss_pred             cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhH
Confidence            1 1345666667888888888889888888888767777778888888877777777788888877665   333 3333


Q ss_pred             HhHHHHHHHHHHhhcccCC
Q 017461          266 FGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~  284 (371)
                      .....++.+++..++.++-
T Consensus       435 ~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  435 LTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             hHHHHHHHHHHHhhhhhhH
Confidence            3334444444555544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.23  E-value=0.003  Score=59.33  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhh-hcc-------ChhHHHHHHHHHHhh
Q 017461          136 WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA-AKL-------GLPFLLVVRVFMGIG  207 (371)
Q Consensus       136 ~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~-------~~~~l~~~r~l~G~~  207 (371)
                      .++...|.+..+..++..++..+..+..-+..-|+++....++.++..+.-... ...       +.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            788888999988889999999999888888888888888887777665542211 100       223444456677777


Q ss_pred             hhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q 017461          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (371)
Q Consensus       208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (371)
                      .+..+.....+++|..|+..-|...++.....++|..++..++..+.+.+|
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777778888899999999999999999999999999999999999987655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.18  E-value=0.01  Score=55.61  Aligned_cols=112  Identities=13%  Similarity=0.038  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhCCc-hhHHHHHHH---HHHHHHHhhhhh-------ccChhHHHHHHHHHHhhhh
Q 017461          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGK-AVLGFGVVW---WSIATALTPVAA-------KLGLPFLLVVRVFMGIGEG  209 (371)
Q Consensus       141 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~~~~~~~~---~~i~~~~~~~~~-------~~~~~~l~~~r~l~G~~~~  209 (371)
                      .-....++.++-.+|..+..+.. .-++| +.+.+..+.   +....++|..-+       -.+-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34556677777777777554321 11223 133333332   222233332220       0155677788999999999


Q ss_pred             chhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       210 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      -....+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888776433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.11  E-value=0.0012  Score=61.58  Aligned_cols=180  Identities=13%  Similarity=0.150  Sum_probs=113.3

Q ss_pred             cCChhHHHHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHH----HHHHHHHHHHHHHHHhh-hhhCCchh
Q 017461           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQS----SFFWGYLLTQIAGGIWA-DTVGGKAV  171 (371)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~g~l~-dr~Grr~~  171 (371)
                      ..+..|...+.+.+..+...+....+....+. ....++++.++.-+..+    +..+......+..+... -++..|..
T Consensus       256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~  335 (488)
T KOG2325|consen  256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI  335 (488)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence            34456667777777777777666665554444 44557777666544443    33333333333333222 33345666


Q ss_pred             HHHHHHHHHHHHHHhhhhh-----------------------------ccChhHHHHH-HHHHHhhhhchhhhHHHHHhc
Q 017461          172 LGFGVVWWSIATALTPVAA-----------------------------KLGLPFLLVV-RVFMGIGEGVAMPAMNNILSK  221 (371)
Q Consensus       172 ~~~~~~~~~i~~~~~~~~~-----------------------------~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~  221 (371)
                      +..+.++......+.....                             ..+.+.++++ -++.|++.-.+.....++-+|
T Consensus       336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk  415 (488)
T KOG2325|consen  336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK  415 (488)
T ss_pred             eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence            6655444433333221110                             0023344444 456677777777788899999


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHH
Q 017461          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      ...+++++.+.++++....++..+||++........|.|+++.+.+...++...++
T Consensus       416 iLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  416 ILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             HhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998999888877666555444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.042  Score=51.39  Aligned_cols=110  Identities=15%  Similarity=0.232  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh---hhCCchhHHHHHHHHHHHHHHhhhhhc----------------cChhHHHHHHH
Q 017461          142 GLIQSSFFWGYLLTQIAGGIWAD---TVGGKAVLGFGVVWWSIATALTPVAAK----------------LGLPFLLVVRV  202 (371)
Q Consensus       142 ~~~~s~~~~~~~~~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~l~~~r~  202 (371)
                      +...-...+|..+++.+.+.+.+   ++|+++.+.++..+..++.++.-....                .++...++..+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            33344445566666666666664   579999999999998888877654321                13667788899


Q ss_pred             HHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHH
Q 017461          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (371)
Q Consensus       203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (371)
                      +.|++-++.....+.+++..+ +++|..+.++...-..++..++-+....
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999 7888889888887777777776555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.09  E-value=0.0076  Score=56.08  Aligned_cols=131  Identities=16%  Similarity=0.075  Sum_probs=97.6

Q ss_pred             hhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhh---hhhc-----cCh
Q 017461          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---VAAK-----LGL  194 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~-----~~~  194 (371)
                      ++..+..+...-|+++..+|.+-+...+....+.+...++.+|+|..+.-+++...-.+...++.   +.+.     .+.
T Consensus       277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            44555555555599999999999999999999999999999999988887777654333222221   2221     134


Q ss_pred             hHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      ..++.+-++.=+|.=+...+..-++.|..|+++||...|.-....++--++-..++-.+
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45555566666777777888899999999999999999999988888877776655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.96  E-value=0.0054  Score=60.57  Aligned_cols=150  Identities=13%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHH-HHHHHHHHHHHhhhhhC--CchhHHHHHHHHHHH
Q 017461          107 VLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIA  182 (371)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~  182 (371)
                      ....+..++.......+...+|. +++.+|++..+.+++.....+ +.+++.+++|+++||++  .|+.+.+++++..++
T Consensus       333 ~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       333 MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            33444444444455555566776 455799999999999988776 67899999999999998  446666666666665


Q ss_pred             HHHhhh------------------------------h-------hc----------------------------------
Q 017461          183 TALTPV------------------------------A-------AK----------------------------------  191 (371)
Q Consensus       183 ~~~~~~------------------------------~-------~~----------------------------------  191 (371)
                      .+++..                              +       ..                                  
T Consensus       413 ~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~  492 (633)
T TIGR00805       413 YLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYT  492 (633)
T ss_pred             HHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceec
Confidence            443210                              0       00                                  


Q ss_pred             ----------------c------C-hhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHH-HHHHHHH
Q 017461          192 ----------------L------G-LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY-LGSVTGL  247 (371)
Q Consensus       192 ----------------~------~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~  247 (371)
                                      .      + +..+++.-++..+..+........++-...|+++|..++|+...... +|.+-+|
T Consensus       493 ~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~p  572 (633)
T TIGR00805       493 NCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAP  572 (633)
T ss_pred             ccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChh
Confidence                            0      0 22233334444444444445555566778889999999999765554 6778888


Q ss_pred             HhHHHHhcc
Q 017461          248 AFSPFLIHR  256 (371)
Q Consensus       248 ~~~~~l~~~  256 (371)
                      ++-|.++|.
T Consensus       573 i~fG~~iD~  581 (633)
T TIGR00805       573 ILFGLLIDV  581 (633)
T ss_pred             HHHhhhhhc
Confidence            888888874

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.96  E-value=0.0079  Score=53.22  Aligned_cols=213  Identities=11%  Similarity=0.039  Sum_probs=132.8

Q ss_pred             hcCCCcchHH-HHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhch
Q 017461          133 EFNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA  211 (371)
Q Consensus       133 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  211 (371)
                      +.+++..++. -+.-+..-.+.+.-.+.=.+.|..-.|+++++-.+...+..++.-+.+  +.+.+=+.-++-|...+. 
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tAa-  111 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATAA-  111 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHHH-
Confidence            4455554432 222233444556666667789999999999988888888888888998  999999999999988664 


Q ss_pred             hhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHH--HHHhHHHHHHHHHHhhcccCCCCCCC
Q 017461          212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF--YSFGSLGTVWFTVWLSKAHSSPAEDP  289 (371)
Q Consensus       212 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (371)
                      ..+-++++=+..+++++.++.|....+.-.|...|..++..+.+...+....  .+......+..++. .++|..++..-
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A-~fLP~v~rSl~  190 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLA-LFLPRVKRSLY  190 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHH-hhCCCCchhhh
Confidence            5778888888899999999999999999999999999999988754443322  22222222222333 33444332110


Q ss_pred             CCChHHHHHHhhhccCC--CCc-----------ccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017461          290 QLRPAEKKLIVSSCASK--EPV-----------KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ  350 (371)
Q Consensus       290 ~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (371)
                      .....+ +....+.++.  +..           -..++.+..++|.+..-.+-+.+..++++-...|.-..-.+
T Consensus       191 f~~~~~-~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~  263 (433)
T KOG3810|consen  191 FHRLED-KISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKE  263 (433)
T ss_pred             hhcccc-cceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHh
Confidence            000000 0000000000  000           01234455677887777777777777777776666555444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.0034  Score=57.66  Aligned_cols=133  Identities=15%  Similarity=0.095  Sum_probs=80.5

Q ss_pred             hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhC----C---chhHHHHHH----HHHHHHHHhhhhhccChh
Q 017461          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG----G---KAVLGFGVV----WWSIATALTPVAAKLGLP  195 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G----r---r~~~~~~~~----~~~i~~~~~~~~~~~~~~  195 (371)
                      .+...+-.|.+..+.-++..++..+..+|.+++|.++||+-    +   .+.-.+...    +.+...++...... +..
T Consensus       271 ~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~s~  349 (493)
T KOG1330|consen  271 IYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-SSM  349 (493)
T ss_pred             HHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-HHH
Confidence            33344444556666677788888999999999999999942    2   222222221    11221222222221 223


Q ss_pred             HHHHHHHHHHhhhhc-hhhhHHHHHhcccCCcchHHHHHHHHHHHH-HHHHHHHHhHHHHhcc-cCch
Q 017461          196 FLLVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMY-LGSVTGLAFSPFLIHR-FGWP  260 (371)
Q Consensus       196 ~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~-~gw~  260 (371)
                      .+.+..++.|..... .+.....+..|..|+++|..+.++...... .|-+-+|.+.|.+.++ .||+
T Consensus       350 ~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  350 IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            334444555544333 455566778999999999999999765554 4556667688888885 4676

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.53  E-value=0.0017  Score=60.64  Aligned_cols=78  Identities=18%  Similarity=0.109  Sum_probs=62.5

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHH-HHHHHHHHHHHHhhhhh
Q 017461          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAA  190 (371)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~  190 (371)
                      ++..+.....+.++++.+-+.+|+++.+.|.+...--+..+++.|++|.++|||-+|+.++ .+.+....+.++..+.+
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~   98 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVP   98 (618)
T ss_pred             eeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeecc
Confidence            3444455566778888899999999999999999999999999999999999998665555 55566666667766664

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.47  E-value=0.14  Score=47.93  Aligned_cols=254  Identities=11%  Similarity=-0.005  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHhhh-----hhCCchhHHHHH-HHH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLGFGV-VWW  179 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~~~-~~~  179 (371)
                      ++.+.+++.+.-.......+|.+.++  -+.+.++.+.+.-+.. -+ -.-+++.++.|     |+||||.-++-. .+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~-Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASY-PF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeec-hh-HHHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            34455666665555444557887777  6777777665432111 00 12355666666     799998766533 223


Q ss_pred             HHHHHHhhhhh---------------cc-------ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHH
Q 017461          180 SIATALTPVAA---------------KL-------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS  237 (371)
Q Consensus       180 ~i~~~~~~~~~---------------~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  237 (371)
                      ++..+..+..-               +.       +...+....++.=+-.+.-..++-.+.-.+..+++++.+.-....
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33222222111               00       111222333233333343344444455556667787766666555


Q ss_pred             HHHHHHHHHHHhHHHHhcc-------------cCc---hhHHHHHhHHHHHHHHHHhhcccCCCCCCCCC--Ch---HHH
Q 017461          238 GMYLGSVTGLAFSPFLIHR-------------FGW---PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL--RP---AEK  296 (371)
Q Consensus       238 ~~~~g~~~g~~~~~~l~~~-------------~gw---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~  296 (371)
                      +.++|..++..+--.+.+.             .|+   ..-..+.+.+.++..+++.++.+|.+..+...  ..   .+.
T Consensus       162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~  241 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG  241 (544)
T ss_pred             HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence            5566655554443333220             121   11222334444555556666666655322100  00   000


Q ss_pred             H--HHhhhccCCC---Cccc-------chhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhh
Q 017461          297 K--LIVSSCASKE---PVKT-------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQ  364 (371)
Q Consensus       297 ~--~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~  364 (371)
                      +  ....+..+.+   ....       ..+.+++|-|.+..+++..+..-.++.+-..-...=+.+ .|++....+++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~l  320 (544)
T PF13000_consen  242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVL  320 (544)
T ss_pred             cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHH
Confidence            0  0000000000   0001       123346677888888888888777777666666666667 5998888777653

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.34  E-value=0.00094  Score=64.25  Aligned_cols=153  Identities=14%  Similarity=0.131  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHH-HHHHHHHHHHHhhhhhC--CchhHHHHHHHH
Q 017461          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGVVWW  179 (371)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~  179 (371)
                      ..+....++..........+.++.|- ++.+|++++++.+++..+..+ +.++|.+++|.+..|+.  .|..+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            34555555566666666667777776 667899999999988876555 77789999999999984  444444444444


Q ss_pred             HHHHHH---hhhh--h-----------------------------------------------ccChhHHHHHHHHHHhh
Q 017461          180 SIATAL---TPVA--A-----------------------------------------------KLGLPFLLVVRVFMGIG  207 (371)
Q Consensus       180 ~i~~~~---~~~~--~-----------------------------------------------~~~~~~l~~~r~l~G~~  207 (371)
                      .++.++   ..+.  +                                               ...+..+++..++.-+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            333332   1000  0                                               00234455555555555


Q ss_pred             hhchhhhHHHHHhcccCCcchHHHHHHHHHHH-HHHHHHHHHhHHHHhcc
Q 017461          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGM-YLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~~~  256 (371)
                      .+........++-...++++|..++|+..... .+|.+-||++-|.+.|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            55555666667778889999999999976554 46889999999998884

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.01  E-value=0.069  Score=47.05  Aligned_cols=71  Identities=11%  Similarity=0.134  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhccc
Q 017461          150 WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV  223 (371)
Q Consensus       150 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  223 (371)
                      +.-+...++.+.+..++|.|+++.++...+......- +-+  .+..++-...+.|+|.+..+..--+++++..
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEP--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cch--hHHhhccHHHhhccccccccccCcceecHHH
Confidence            3444555666689999999999999888776644332 333  5788889999999999998887766665554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.32  E-value=2.4  Score=40.19  Aligned_cols=72  Identities=18%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             HHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHH
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~  272 (371)
                      -++.|+........--..+.+.+| +++|...+|-++...++..++..++++.+.+.+||+....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344555556666666677788886 457888899998888888877777779999999999877776665555

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.00  E-value=0.0079  Score=53.79  Aligned_cols=106  Identities=12%  Similarity=0.056  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHH--HHHHHHHHHhhh----------hhccChhHHHHHHHHHHhhhhc
Q 017461          144 IQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGV--VWWSIATALTPV----------AAKLGLPFLLVVRVFMGIGEGV  210 (371)
Q Consensus       144 ~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~--~~~~i~~~~~~~----------~~~~~~~~l~~~r~l~G~~~~~  210 (371)
                      ...+|.++-.+|..+.++..-+- .+|++.+.+.  +++.-..++|..          .+  |-+..++..++.|+..|-
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~--~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFN--SDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCccc--chHHHHHHHHHHHHccch
Confidence            45578888888888777643211 3444443221  222222233311          22  456778889999999999


Q ss_pred             hhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHH
Q 017461          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (371)
Q Consensus       211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (371)
                      ..+....+..+..++++|..+-.+...+..+|..+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888888888888888877653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.78  E-value=0.38  Score=47.58  Aligned_cols=151  Identities=13%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHH-HHHHHHHHHHHhhhhhC--CchhHHHHHHHHH
Q 017461          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGVVWWS  180 (371)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~  180 (371)
                      ++....++..+.......+.+++|- +.+.||++.+.+..+.....+ +.++|.+++|.+..||-  .|....+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            4555666666666666667777887 566799999999988865554 56688889999999874  4444444444443


Q ss_pred             HHHHH---hhhhh-------------------------------------------------------------------
Q 017461          181 IATAL---TPVAA-------------------------------------------------------------------  190 (371)
Q Consensus       181 i~~~~---~~~~~-------------------------------------------------------------------  190 (371)
                      +..+.   ..+..                                                                   
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            33333   11110                                                                   


Q ss_pred             -----------c----c---------------ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHH-
Q 017461          191 -----------K----L---------------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM-  239 (371)
Q Consensus       191 -----------~----~---------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-  239 (371)
                                 .    .               .+..+++..++.-+..+...+..+.++-...++++|..++|+..+.. 
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~ir  632 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIR  632 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHH
Confidence                       0    0               12334444444444444455666777788899999999999976665 


Q ss_pred             HHHHHHHHHhHHHHhc
Q 017461          240 YLGSVTGLAFSPFLIH  255 (371)
Q Consensus       240 ~~g~~~g~~~~~~l~~  255 (371)
                      .+|.+-+|++-|+++|
T Consensus       633 llg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  633 LLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHhcCCchHhhhhhHh
Confidence            4788889999999987

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.60  E-value=0.76  Score=43.23  Aligned_cols=51  Identities=16%  Similarity=0.090  Sum_probs=32.6

Q ss_pred             ChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017461          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (371)
Q Consensus       193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  248 (371)
                      .++..++.-++.|++.+........+.+ .+|++    .++.+..+.+++++++.+
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~  155 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSL  155 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHH
Confidence            3667777788889998888777777766 55543    334444555555554443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.58  E-value=1.3  Score=40.74  Aligned_cols=111  Identities=11%  Similarity=0.006  Sum_probs=57.5

Q ss_pred             HHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHH---HHhhhhh--
Q 017461          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT---ALTPVAA--  190 (371)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~--  190 (371)
                      ..+....+....+++.+++-.... ...+...+.+.+.+..++...+--+...|.-..++..+..+..   +.+.++.  
T Consensus        30 ~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~  108 (406)
T KOG1479|consen   30 TLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVK  108 (406)
T ss_pred             cccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334555666677777777653333 4444455555555555555555555443333333332222222   2222221  


Q ss_pred             -----ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcch
Q 017461          191 -----KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER  228 (371)
Q Consensus       191 -----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  228 (371)
                           ...++..++.-++.|++.|......+...++ +|++.-
T Consensus       109 ~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt  150 (406)
T KOG1479|consen  109 TDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT  150 (406)
T ss_pred             cCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence                 1146667777788888877766666666554 444443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.33  E-value=0.33  Score=42.60  Aligned_cols=141  Identities=15%  Similarity=0.111  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHh
Q 017461          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS  220 (371)
Q Consensus       141 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  220 (371)
                      .|.+.-+-.+-..+..+.+..+.||+---.=+.+..++.+.+.++.++++  +.++-+.+-.+..++.|.....-.++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            34444455556666677777788887544445666778888889999999  8999999999999998876665555443


Q ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc--cCchhHHHHHhHHHHHHHHHHhhcccCCCCCC
Q 017461          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (371)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      . +++    ...+-++.+.+.++.+|..--.++.+.  ..-|...++...+.++.+...++.+++++...
T Consensus       142 ~-Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~  206 (409)
T KOG3880|consen  142 R-YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVY  206 (409)
T ss_pred             c-CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcccc
Confidence            3 322    234556666666667776655566653  34688888888888777777777666655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.28  E-value=0.41  Score=44.15  Aligned_cols=98  Identities=7%  Similarity=-0.061  Sum_probs=73.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHH--HHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhH
Q 017461          138 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV--VWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAM  215 (371)
Q Consensus       138 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~--~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  215 (371)
                      ..--|.+-++..+..+++.+..|.+..++.+..-+.++.  ++.+...+++++.+  |.|...++.++.+.......+.+
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~--~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG--NIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            334588888888999999999999977777654444433  44455556667777  99999999999888888888887


Q ss_pred             HHHHhcccCCcchHHHHHHHHH
Q 017461          216 NNILSKWVPVAERSRSLALVYS  237 (371)
Q Consensus       216 ~~~i~~~~~~~~r~~~~~~~~~  237 (371)
                      ..-++.....+.-|..+|+...
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHH
Confidence            7777777766666766666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.49  E-value=0.23  Score=45.93  Aligned_cols=132  Identities=14%  Similarity=-0.021  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhc
Q 017461          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (371)
Q Consensus       142 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  221 (371)
                      .|=..++.+...+.+...-++.+|+|-|+.+..+...+.++..+.++..  +.+.....+-..|+-.+....+-+..+++
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~--~~~~~~~~~~~~G~~~~~~~~~p~~l~~~  412 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVL--NTYVVLSHRSTAGILSSPLLTVPYGALAL  412 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhh--hHHHHHHHHhhcceeecchhcccHHHHHH
Confidence            3555677788889999999999999988888888877888888888887  77777788888885444444433333332


Q ss_pred             ccC-----------------------CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHH
Q 017461          222 WVP-----------------------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       222 ~~~-----------------------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~  275 (371)
                      +.-                       ...+|...|+.+....+..++.....|.+.+..| -+.+-.+.+++.+++..
T Consensus       413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~  490 (498)
T KOG0637|consen  413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG  490 (498)
T ss_pred             HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence            221                       1123666777788888888887777777777655 34444444444444433

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.98  E-value=0.015  Score=49.29  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHh---------hhhhCCchhH
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW---------ADTVGGKAVL  172 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l---------~dr~Grr~~~  172 (371)
                      ...++.+.+....+++-..+-.+.++.|+++.....++-+..+.-++..++.|..         .||+|||+..
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w   94 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW   94 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence            4455666666666666666666777888888888888888888888888888755         5689998754

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.93  E-value=1.2  Score=42.04  Aligned_cols=97  Identities=8%  Similarity=-0.120  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHH--HHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHH
Q 017461          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF--GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI  218 (371)
Q Consensus       141 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  218 (371)
                      -|.+-++..+..+++.+..|++-.++.+---+.+  ..++.+...++++..+  |.|..+++.++.+.......+.+..-
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~--~Iw~~Y~~yvlf~~~y~flitia~~~  377 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSH--DIWVLYVTYVLFRGIYQFLVPIATFQ  377 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777888899999999777654323333  3344444456666677  99999999999999999999999888


Q ss_pred             HhcccCCcchHHHHHHHHHHH
Q 017461          219 LSKWVPVAERSRSLALVYSGM  239 (371)
Q Consensus       219 i~~~~~~~~r~~~~~~~~~~~  239 (371)
                      ++.....+.-|..+|+.....
T Consensus       378 iA~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       378 IASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             HHHHhcccceEEEEecHHHHH
Confidence            888887766687777765443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.82  E-value=9.3  Score=36.57  Aligned_cols=73  Identities=16%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             HHHHHhhhhchhhhHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHH
Q 017461          201 RVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (371)
Q Consensus       201 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  273 (371)
                      -+..|+........--..+.+.+| ++++...+|-++...++-..+-.++++.+.+..||+....+.-++.++.
T Consensus       289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit  362 (491)
T PF03219_consen  289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILIT  362 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Confidence            344555555556666667778887 4456777888877777777777788899999999998877655444443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.17  E-value=0.73  Score=42.29  Aligned_cols=109  Identities=14%  Similarity=0.049  Sum_probs=74.2

Q ss_pred             cchHHHHHHH-HHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh---------hhccChhHHHHHHHHHHhh
Q 017461          138 PATVGLIQSS-FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV---------AAKLGLPFLLVVRVFMGIG  207 (371)
Q Consensus       138 ~~~~~~~~s~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---------~~~~~~~~l~~~r~l~G~~  207 (371)
                      ..-.-++..+ +.+.-.+|.+...++-+.= ||.. .+..++=.+..-++.+         -.  +-+++++...+.|+.
T Consensus       281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~--~~~~~~~l~~~lgls  356 (406)
T KOG1479|consen  281 DWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFE--SDGWFIFLMSLLGLS  356 (406)
T ss_pred             hhhHHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceec--CchHHHHHHHHHHhc
Confidence            3344455556 7888888877766665553 3333 3333333332222222         23  567888999999999


Q ss_pred             hhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhH
Q 017461          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS  250 (371)
Q Consensus       208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  250 (371)
                      .|=..++...+..+..+++++-.+-.+.......|...|..++
T Consensus       357 nGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  357 NGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             cchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9988888899999999988888887777777778877777655

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=91.23  E-value=3.7  Score=37.01  Aligned_cols=135  Identities=10%  Similarity=-0.010  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhc
Q 017461          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (371)
Q Consensus       142 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  221 (371)
                      |..-.+..+..+++.+..|.+--.+.|..-++++..-...+.+++.++...+.|...++.++.+.-.....+.+..-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            45556667788899999999988887775555444444444444434433389999999999988888888888888888


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-----------chhHHHHHhHHHHHHHHHHhh
Q 017461          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-----------WPSVFYSFGSLGTVWFTVWLS  279 (371)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----------w~~~f~~~~~~~~~~~~~~~~  279 (371)
                      ....+.-|..+|+......   ++-.++.-.+.|.-|           +..-|.+.+++.++.+.+.+.
T Consensus       354 nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             hhhhhhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            8877777777777543322   222222223333211           233466666666655454443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=90.50  E-value=0.6  Score=40.02  Aligned_cols=101  Identities=12%  Similarity=0.059  Sum_probs=57.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHHHH---hc--ccCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHh
Q 017461          226 AERSRSLALVYSGMYLGSVTGLAFSPFL---IH--RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV  300 (371)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (371)
                      ++|+....+...+.++|.++....--+.   .+  ...|++++.+.+++.++.+++..++-.+-....++. ++      
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~-k~------   74 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKE-KQ------   74 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc-cc------
Confidence            5666666677777888877664332111   11  235999999988887777776665533321111110 00      


Q ss_pred             hhccCCCCcccchhhhhhcChhHHHHHHHHHHHH
Q 017461          301 SSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (371)
Q Consensus       301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  334 (371)
                       ++.+..........+.+|++..|...+.+....
T Consensus        75 -~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   75 -EKENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             -ccccccccccchHHHHHccchHHHHHHHHHHHh
Confidence             000111122467788999999997776665543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.99  E-value=6.9  Score=34.02  Aligned_cols=135  Identities=13%  Similarity=0.036  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhCCc--hhHHHHHHHHHHHHHHhhhhh----cc-ChhHHHHHHHHHHhhhhchhh
Q 017461          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVWWSIATALTPVAA----KL-GLPFLLVVRVFMGIGEGVAMP  213 (371)
Q Consensus       141 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~----~~-~~~~l~~~r~l~G~~~~~~~~  213 (371)
                      -|.+.+.++++.++|+-+..++..|-..|  ..+.+..++..+...+..+..    +. +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58999999999999999998888765444  455565555554444333322    11 233335566666677788999


Q ss_pred             hHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHH
Q 017461          214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       214 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~  275 (371)
                      ....+=+.+.|.+.|...+.++..-.++-..++-..-..-....+=|..|-++.+...+..+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            99999999999999998888876665554443321100000012346677776665554433

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.85  E-value=15  Score=33.26  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             hhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHH----HH-hhhhh--ccChhHHH
Q 017461          127 ILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT----AL-TPVAA--KLGLPFLL  198 (371)
Q Consensus       127 ~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~----~~-~~~~~--~~~~~~l~  198 (371)
                      +..++.. .|-..-+.+.+.+.|.....+|+...-++.|-=-.-+.+..-.++..++.    ++ ..|+.  ..+.+.+.
T Consensus        30 l~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly  109 (508)
T COG4262          30 LGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY  109 (508)
T ss_pred             HHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence            3344444 35567788999999999999999888887774322222222222221111    11 12332  11567888


Q ss_pred             HHHHHHHhhhhchhhhHHHHHhc
Q 017461          199 VVRVFMGIGEGVAMPAMNNILSK  221 (371)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~i~~  221 (371)
                      ++-++.|.-.|...|..+.++..
T Consensus       110 ~lt~vIG~LVG~EiPL~mrml~~  132 (508)
T COG4262         110 ALTAVIGVLVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHH
Confidence            88999999999999999888766

>PRK10263 DNA translocase FtsK; Provisional

Probab=89.17  E-value=4.9  Score=42.52  Aligned_cols=19  Identities=11%  Similarity=-0.109  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHhhhhhC
Q 017461          149 FWGYLLTQIAGGIWADTVG  167 (371)
Q Consensus       149 ~~~~~~~~~~~g~l~dr~G  167 (371)
                      .++..+|..+...+..-||
T Consensus        62 Nl~GiVGA~LAD~L~~LFG   80 (1355)
T PRK10263         62 NLGGMPGAWLADTLFFIFG   80 (1355)
T ss_pred             cccchHHHHHHHHHHHHHh
Confidence            4444555555555555555

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=88.71  E-value=5.3  Score=29.89  Aligned_cols=47  Identities=28%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHH
Q 017461          139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (371)
Q Consensus       139 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  185 (371)
                      ...+.......++..++..+.|.+.|..|.+..+.+...+..++.+.
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            44567777788888888899999998888777666655555444433

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=88.47  E-value=17  Score=32.08  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh---hCCchhHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT---VGGKAVLGFGVV  177 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr---~Grr~~~~~~~~  177 (371)
                      ++.+..+++.+++++.-+..+.++--+..+.+..+.-....++..+....      .+..+-.++   ||.||.=+++.+
T Consensus        22 r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~------~~a~r~~~~~~TfGy~R~eiLaa~   95 (296)
T COG1230          22 RRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAI------KLARRPATKRFTFGYKRLEILAAF   95 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHH------HHhcCCCCCCCCccHhHHHHHHHH
Confidence            44444445555555555555555555666777777555555444443322      223333333   677777666666


Q ss_pred             HHHHHHHHhhh
Q 017461          178 WWSIATALTPV  188 (371)
Q Consensus       178 ~~~i~~~~~~~  188 (371)
                      +.++..+..++
T Consensus        96 ~nav~Li~~s~  106 (296)
T COG1230          96 LNALLLIVVSL  106 (296)
T ss_pred             HHHHHHHHHHH
Confidence            66555544443

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=88.25  E-value=14  Score=30.81  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=22.7

Q ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchh
Q 017461          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (371)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  261 (371)
                      ++...+++.+--.......-++..+|..+++.+.+..+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~a  193 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFWA  193 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33333433333344455555666777777777777766533

The function of this family is unknown although a few members are thought to be membrane proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=87.26  E-value=1.3  Score=30.25  Aligned_cols=42  Identities=14%  Similarity=0.121  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhe
Q 017461          324 WALIVSHFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVC  366 (371)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~  366 (371)
                      +.+-..+++.+.+...+.-++|.|+++ .|+++.++|.+.++.
T Consensus         3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~   44 (77)
T PF12832_consen    3 LPLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIR   44 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHH
Confidence            345567788888889999999999998 799999999987654

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.37  E-value=4.2  Score=36.01  Aligned_cols=114  Identities=12%  Similarity=0.076  Sum_probs=76.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHH
Q 017461          138 PATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMN  216 (371)
Q Consensus       138 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  216 (371)
                      ..|+-|....|.+|..+..--....-=+ .=--..+..-.+++.+...+..+.+  ++|..++.-+.-|+-.|..++...
T Consensus       287 ~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftp--si~ivf~lI~~EGLlGGasYVNTf  364 (409)
T KOG3880|consen  287 DSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTP--SIWIVFALILFEGLLGGASYVNTF  364 (409)
T ss_pred             hhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCchHHHHHH
Confidence            3457788888887644332111111000 0000122233344555566777888  899999999999988788888777


Q ss_pred             HHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017461          217 NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (371)
Q Consensus       217 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (371)
                      --+.+-.++++|-.+++.....-.+|..++.+++-.+
T Consensus       365 ~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  365 HNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            7777777899999999999999999988887776444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=84.61  E-value=37  Score=32.44  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchh
Q 017461          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (371)
Q Consensus       197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  261 (371)
                      +++..++.-+..-..+++..++-+.+.+|.-=|++|-+.+...++|+---..+.-++.|.+.++.
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~  472 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT  472 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence            33446677777777888899999999999999999999999999887655555555555544443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.08  E-value=19  Score=31.16  Aligned_cols=101  Identities=18%  Similarity=0.299  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHH----HHHHHHHHHHHHh-hhhhc--cChhHHHHHHHHHHhhhhchhh
Q 017461          142 GLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLG----FGVVWWSIATALT-PVAAK--LGLPFLLVVRVFMGIGEGVAMP  213 (371)
Q Consensus       142 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~i~~~~~-~~~~~--~~~~~l~~~r~l~G~~~~~~~~  213 (371)
                      ....-++..|..+|.+..|++... +-||+.+.    ++++++++..+.. ....+  .+...+++.-++.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            344445666666777777887764 45565544    3344444444332 11211  1366788888888887655555


Q ss_pred             hHHHHHhcc--cCCcchHHHHHHHHHHHHHHHHH
Q 017461          214 AMNNILSKW--VPVAERSRSLALVYSGMYLGSVT  245 (371)
Q Consensus       214 ~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~  245 (371)
                      ....+-.|.  ..|++-|...|+   .+++|.++
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~---iWGfGY~~  254 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGL---IWGFGYIF  254 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHH---HHHHHHHH
Confidence            554444444  234444544444   44444433

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=83.51  E-value=27  Score=32.08  Aligned_cols=165  Identities=13%  Similarity=0.105  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      .+.+++++.....-++......+..+++-+ -...+.-..+-.....+..++.|...|+..|+|++...+++--++.+++
T Consensus        31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~va  110 (503)
T KOG2601|consen   31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVA  110 (503)
T ss_pred             hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHH
Confidence            344555555555555665555544444422 2233333334445566778889999999999999988776644443333


Q ss_pred             ------hhhhc----cChhHHHHHHHHHHhhhhch--hhhHHHHH--hccc----CCcchHHHH---HHHHHHHHHHHHH
Q 017461          187 ------PVAAK----LGLPFLLVVRVFMGIGEGVA--MPAMNNIL--SKWV----PVAERSRSL---ALVYSGMYLGSVT  245 (371)
Q Consensus       187 ------~~~~~----~~~~~l~~~r~l~G~~~~~~--~~~~~~~i--~~~~----~~~~r~~~~---~~~~~~~~~g~~~  245 (371)
                            .+...    .++..+..+-++.-...+..  ...+.+++  -||.    ..+.+..+.   +..-..=..-..+
T Consensus       111 gglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~L  190 (503)
T KOG2601|consen  111 GGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLL  190 (503)
T ss_pred             HHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhch
Confidence                  23221    14555555555444332221  11112211  2221    234444444   4444444456788


Q ss_pred             HHHhHHHHhcccCchhHHHHHhHHHHH
Q 017461          246 GLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (371)
Q Consensus       246 g~~~~~~l~~~~gw~~~f~~~~~~~~~  272 (371)
                      .|.+.|.+.+..+-|..-..+++..++
T Consensus       191 apv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  191 APVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhhhhcccceeechhhhhhhhHHHHHH
Confidence            899999999888877766666655555

>PRK11588 hypothetical protein; Provisional

Probab=81.63  E-value=29  Score=33.19  Aligned_cols=33  Identities=12%  Similarity=0.064  Sum_probs=18.9

Q ss_pred             HHHHhhhhhCCchhHH--HHHHHHHHHHHHhhhhh
Q 017461          158 AGGIWADTVGGKAVLG--FGVVWWSIATALTPVAA  190 (371)
Q Consensus       158 ~~g~l~dr~Grr~~~~--~~~~~~~i~~~~~~~~~  190 (371)
                      ..+++..|++.|..++  +.+++++++....+++.
T Consensus       135 ~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~E  169 (506)
T PRK11588        135 GILALIRKTRGNEILFIPVLFILFSLGGAVFGMGE  169 (506)
T ss_pred             HHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhH
Confidence            3466778887764433  44445555555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	4e-47
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  165 bits (419), Expect = 4e-47
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 9/258 (3%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW I +  F  +    + R N ++A+ P   E  ++   +G   S     Y  ++   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNIL 219
            +D    +  L  G++  +               +  + V+    G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             W    ER   +++      +G  +  L F   +     W +  Y       +      
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 279 SKAHSSPAEDPQLRPAEKKLI-----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
           +    +P         E K             +   K I    +L    +W + +++   
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 264

Query: 334 NWGTFILLTWMPTYYNQV 351
               + +L W PTY  +V
Sbjct: 265 YLLRYGILDWSPTYLKEV 282

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 3/166 (1%)

Query: 126 AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185
           AI  M+ + N     V  +  ++   Y ++Q+  G  +D VG + V+  G+  + +AT +
Sbjct: 22  AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81

Query: 186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT 245
               +   L  L+      G+G GV       +        +   + +L+  G+ +  + 
Sbjct: 82  AVTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139

Query: 246 GLAFSPFLIHRFGWPSVFYSFGSLGTV-WFTVWLSKAHSSPAEDPQ 290
                  L   + W + +     L     F++      + P + P+
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR 185

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
                L  S F L  +      I +      F       GLIQS+F++GY +  I  GI 
Sbjct: 25  IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLG-LPFLLVVRVFMGIGEGVAMPAMNNILSK 221
              +  KA +  G+  +++  AL   AA++      LV    +  G G    A N  ++ 
Sbjct: 85  MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144

Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
             P +     L L  +    G++  + F   LI
Sbjct: 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.92
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.91
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.8
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.71
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.61
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.57
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.46
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.27
2xut_A	524	Proton/peptide symporter family protein; transport	99.1

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=1.3e-30  Score=244.32  Aligned_cols=265  Identities=15%  Similarity=0.222  Sum_probs=222.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +.++..+..+++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            35677788888888999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh----hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          180 SIATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       180 ~i~~~~~~~----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      +++.+++++    ++  +++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999    88  999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccC-chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHH-----HHhhhccCCCCcccchhhhhhcChhHHHHHHH
Q 017461          256 RFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-----LIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (371)
Q Consensus       256 ~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (371)
                      ..| ||+.|++.++++++..++.+++.||++........++.+     ....+.+++...+...++++++++.++...+.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  260 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence            898 999999999988887777777777765543221111100     00000000111111225678899999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          330 HFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      .++..+..+.+..++|.|+++.+|+++.+++++.+..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  298 (451)
T 1pw4_A          261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE  298 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999988999999988776654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=7.2e-30  Score=238.37  Aligned_cols=252  Identities=15%  Similarity=0.196  Sum_probs=214.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      +++..+..+++..+..+++....++..|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            45556667777788888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh---hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh-cc
Q 017461          181 IATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HR  256 (371)
Q Consensus       181 i~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~  256 (371)
                      ++.+++   .+++  +++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999   8888  99999999999999999999999999999999999999999999999999999999999998 65


Q ss_pred             cC-------------------------chhHHHHHhHHHHHHHHHHhhc-ccCCCCCCCCCChHHHHHHhhhccCCCCcc
Q 017461          257 FG-------------------------WPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQLRPAEKKLIVSSCASKEPVK  310 (371)
Q Consensus       257 ~g-------------------------w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (371)
                      .+                         ||+.|++.+++.++..++.++. .||.+.+.++.             ++++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------~~~~~~  247 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------AKQGSF  247 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------SSTTSH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------ccccch
Confidence            55                         9999988887776665554443 23322211110             111222


Q ss_pred             cchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhcCCChhhhhhhhhhee
Q 017461          311 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY-YNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ..++++++|+|.++...+..++.......+..++|.| +++.+|+++.+++.+.+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  305 (438)
T 3o7q_A          248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence            4567789999999999999999999999999999999 88878999999988776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=1.2e-28  Score=225.61  Aligned_cols=243  Identities=14%  Similarity=0.143  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      .++++..+...+....+.+.+|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44566667777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      .+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+..|||+.|++.
T Consensus        83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9999  99999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      +++.++..++.++..||++..++++                ++...++++++|+|.++...+..++.......+..++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877776666666654432211                111345667889999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhhhhee
Q 017461          347 YYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      |+++.+|+++.+++.+.+..+
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~  245 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPI  245 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence            999988999999888766543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.92  E-value=2.4e-24  Score=204.04  Aligned_cols=167  Identities=16%  Similarity=0.179  Sum_probs=144.4

Q ss_pred             HHHHHHhhhhhhh-hhhhhhhhh-----cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHHHH
Q 017461          112 AFLLCNMDRVNMS-IAILPMSAE-----FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       112 ~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~  184 (371)
                      ..+...+..+.+. ...+.+.++     +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            3333333333333 333445555     99999999999999999999999999999999 8999999999999999999


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcc--hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  262 (371)
                      ++++++  +++.++++|++.|++.+...+...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.
T Consensus       101 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  178 (491)
T 4aps_A          101 VLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA  178 (491)
T ss_dssp             HHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999999  99999999999999999999999999999999988  77888889999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhhc
Q 017461          263 FYSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       263 f~~~~~~~~~~~~~~~~~  280 (371)
                      |++.+++.++..++.++.
T Consensus       179 f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          179 FSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999887776665555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.91  E-value=5.6e-24  Score=201.46  Aligned_cols=184  Identities=18%  Similarity=0.258  Sum_probs=155.7

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--------CcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW--------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV  171 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  171 (371)
                      ++.+.+.++..++.++.++|..+++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            3455566666778889999999999999999888753        23467899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh------------------hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHH
Q 017461          172 LGFGVVWWSIATALTPV------------------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLA  233 (371)
Q Consensus       172 ~~~~~~~~~i~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  233 (371)
                      ++++.+++.++.+++++                  ++  |++.++++|+++|+|.|+..+....+++|+.|+++|++..+
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~  165 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS  165 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence            99999999999999984                  67  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhcc--------cCchhHHHHHhHHHHHHHHHHhhcccCCCC
Q 017461          234 LVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       234 ~~~~~~~~g~~~g~~~~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                      +.+.+..+|.++++.++..+...        .+||+.+.+..+..++. ++..++.||+|+
T Consensus       166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~  225 (491)
T 4gc0_A          166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPR  225 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHH
T ss_pred             hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChH
Confidence            99999999999999888877653        24676666655555444 444556788765

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=8.3e-20  Score=174.26  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=141.7

Q ss_pred             HHHhhhhhhhhhh-hhhhhhcC------CCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHHHHHHHHHh
Q 017461          115 LCNMDRVNMSIAI-LPMSAEFN------WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       115 ~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~  186 (371)
                      +..+..+.....+ +.+.+++|      ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++
T Consensus        23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (524)
T 2xut_A           23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL  102 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            3333333344444 44678899      9999999999999999999999999999999 99999999999999999998


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhHHHHhcccCchhHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  263 (371)
                      ++++. +++.++++|++.|++.+...+...+++.|++|+++|+++.++   ...+.++|.+++|.+++.+.+..||++.|
T Consensus       103 ~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          103 AIFEH-SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             HHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             HHhcc-cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            88752 688999999999999999999999999999999999876666   89999999999999999999989999999


Q ss_pred             HHHhHHHHHHHHHHhhc
Q 017461          264 YSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       264 ~~~~~~~~~~~~~~~~~  280 (371)
                      ++.+++.++..++.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          182 GIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99888877665555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.80  E-value=4.3e-20  Score=171.24  Aligned_cols=226  Identities=11%  Similarity=0.035  Sum_probs=147.0

Q ss_pred             Hhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHH---HHhhhhhcc
Q 017461          117 NMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT---ALTPVAAKL  192 (371)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~  192 (371)
                      ........+.+|. +++++|++..+.|++.+++.++..++++++|+++||+|||++++++.++++++.   ..+.++.  
T Consensus        20 ~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--   97 (417)
T 2cfq_A           20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP--   97 (417)
T ss_dssp             HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3334445556666 566799999999999999999999999999999999999999999888775532   2222322  


Q ss_pred             Ch-hHHHHHHHHHHhhhhchhhhHHHHHhcccCC--cchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHH
Q 017461          193 GL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (371)
Q Consensus       193 ~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  269 (371)
                      .. ..++.++++.|++.+...+.....+.++.++  ++++...+.......+|..++|.+++++.+ .+|++.|++.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~  176 (417)
T 2cfq_A           98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC  176 (417)
T ss_dssp             HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence            11 1234455666665554444444444444432  456777788888889999999999999987 5899999987776


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017461          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (371)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (371)
                      .++..++.++..||+++..++.   ++     +..++++.....++++++++.++...+..++....+..+..++|.|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (417)
T 2cfq_A          177 ALILAVLLFFAKTDAPSSATVA---NA-----VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT  248 (417)
T ss_dssp             TTTHHHHSCSSCCCCSCSSCSS---SS-----SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccccc---cc-----cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544444333333332111000   00     000111111234567889999987777766666666667777898887


Q ss_pred             HhcC
Q 017461          350 QVSS  353 (371)
Q Consensus       350 ~~~g  353 (371)
                      +.++
T Consensus       249 ~~~~  252 (417)
T 2cfq_A          249 SFFA  252 (417)
T ss_dssp             HTSS
T ss_pred             HHHh
Confidence            7544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.71  E-value=1e-16  Score=149.67  Aligned_cols=171  Identities=13%  Similarity=0.072  Sum_probs=144.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--CCchhHHHHHHHHH-HHHHHh
Q 017461          111 SAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGFGVVWWS-IATALT  186 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~~  186 (371)
                      +..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++.++.. ++.++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            33344444445566667776555 899999999999999999999999999999999  99999988887776 777777


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhcccCchhHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      .+.+..+.+.+++..++.|++.+...+....++.|.+|+++|++++|+......+ |..++|.+.+.+.+..||+..|++
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  418 (451)
T 1pw4_A          339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  418 (451)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            7764226788888899999998888888899999999999999999999999999 999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhcc
Q 017461          266 FGSLGTVWFTVWLSKA  281 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~  281 (371)
                      .+++.++..++.++..
T Consensus       419 ~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          419 MIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888877766665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.61  E-value=6.9e-15  Score=136.17  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=125.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHH
Q 017461          138 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN  217 (371)
Q Consensus       138 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  217 (371)
                      ....+++.++..++..++.++.|+++||+|||+++.++.++.+++.++.++.+  +.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888889999999999999999999999999998888888887777  8888888888888887777777889


Q ss_pred             HHhcccCCcchHHHHHH-HHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCC
Q 017461          218 ILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       218 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  284 (371)
                      +++|.+|++.|+.+.++ ++....+|..++|.++|.+.+..|+...|.+.+++.++..++.++..+++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999998 48888899999999999999988899999998888887777666655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.57  E-value=3.3e-14  Score=132.10  Aligned_cols=152  Identities=9%  Similarity=0.005  Sum_probs=125.9

Q ss_pred             hhhhhhhhhhhh-hh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhH
Q 017461          119 DRVNMSIAILPM-SA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (371)
Q Consensus       119 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (371)
                      .........|.+ .+ .+|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+++.++..+.+  +.+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  350 (438)
T 3o7q_A          273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHVG  350 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcHH
Confidence            334444555555 44 4599999999999999999999999999999999999999999999999998888887  6655


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHH
Q 017461          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~  275 (371)
                      ++ .-++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.+++.++..+
T Consensus       351 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          351 LI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            44 448899999999999999999999755 888888877 566999999999999999999 99999876655444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.51  E-value=1.2e-13  Score=130.35  Aligned_cols=179  Identities=13%  Similarity=0.013  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      +....+........+....+.+.+..+.+............+...++.++.+.+.||+|||+.++.+....+++.+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            33334444444455566677888888888888888888888999999999999999999999999998888887766554


Q ss_pred             hhc--cChhHHHHHHHHHHhh-hhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc------ccCc
Q 017461          189 AAK--LGLPFLLVVRVFMGIG-EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGW  259 (371)
Q Consensus       189 ~~~--~~~~~l~~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~gw  259 (371)
                      ...  ...+..++.-++...+ .....+..+.+.+|.+|.+.|++++|+......+|..+++.+...+.+      ..++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~  441 (491)
T 4gc0_A          362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN  441 (491)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred             HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            321  1222222222222222 223456778899999999999999999999999999998887765543      3567


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCC
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                      .+.|++.++++++..++.+++.||++.+
T Consensus       442 ~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            7889999999999999888999987554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.46  E-value=3.1e-13  Score=127.57  Aligned_cols=164  Identities=14%  Similarity=0.064  Sum_probs=128.4

Q ss_pred             hhhhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHH-----HHHHHHHHHHHHhhhhh---
Q 017461          120 RVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-----FGVVWWSIATALTPVAA---  190 (371)
Q Consensus       120 ~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~---  190 (371)
                      .......++.+ .+.++.+....+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++..+..   
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (491)
T 4aps_A          299 EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY  378 (491)
T ss_dssp             HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred             HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344445554 4456777678888889999999999999999999999987665     77777777777666632   


Q ss_pred             ----ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          191 ----KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       191 ----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                          ..+.+.+++..++.|++.+...+....++.|.+|+++|+.+.|+......+|..+++.+.+.+.+ .++.+.|++.
T Consensus       379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~  457 (491)
T 4aps_A          379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYF  457 (491)
T ss_dssp             CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHT
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence                12677888889999999999899999999999999999999999999999999999999888776 4677888888


Q ss_pred             hHHHHHHHHHHhhcccCC
Q 017461          267 GSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~  284 (371)
                      ++++++..++.++..++.
T Consensus       458 ~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          458 GLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888887777766665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.27  E-value=1.3e-12  Score=118.92  Aligned_cols=153  Identities=12%  Similarity=-0.039  Sum_probs=116.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH-HHHHHH--Hh
Q 017461          111 SAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIATA--LT  186 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~--~~  186 (371)
                      +..+........+....|.+.+ .+|.+..+.+++.+...++..++.++.+++.||+|++  +..+..+ ..++..  ..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            3334444444555666676544 4899999999999999999999999999999999883  3333333 222222  22


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      ......+.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+......+|..++|.+.+.+.+..+|+..+++.
T Consensus       284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            22111157778888899999999999999999999997 89999999999999999999999999998877787777664

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.10  E-value=1.8e-10  Score=109.46  Aligned_cols=145  Identities=12%  Similarity=0.066  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh----hhhCCc----hhHHHHHHHHHHHHHHhhhhh-------ccChhHHHHHHHHH
Q 017461          140 TVGLIQSSFFWGYLLTQIAGGIWA----DTVGGK----AVLGFGVVWWSIATALTPVAA-------KLGLPFLLVVRVFM  204 (371)
Q Consensus       140 ~~~~~~s~~~~~~~~~~~~~g~l~----dr~Grr----~~~~~~~~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~  204 (371)
                      ..+++.....++..++.++.+++.    +|.|+|    +.+.++.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            466666666677777787877765    555432    456778888888887776642       12677788889999


Q ss_pred             HhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc--Cc---------hhHHHHHhHHHHHH
Q 017461          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GW---------PSVFYSFGSLGTVW  273 (371)
Q Consensus       205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw---------~~~f~~~~~~~~~~  273 (371)
                      |++.+...+....++.|.+|+++||+++|+......+|..++|.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987732  23         33477777777776


Q ss_pred             HHHHhhcccCC
Q 017461          274 FTVWLSKAHSS  284 (371)
Q Consensus       274 ~~~~~~~~~~~  284 (371)
                      .++.+++.++.
T Consensus       496 ~~~~~~~~~~~  506 (524)
T 2xut_A          496 AIVFALYARSY  506 (524)
T ss_dssp             HHHHC------
T ss_pred             HHHHHHHHHHh
Confidence            66665554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-21
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 92.1 bits (227), Expect = 4e-21
 Identities = 43/262 (16%), Positives = 87/262 (33%), Gaps = 9/262 (3%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW I +  F  +    + R N ++A +P   E  ++   +G   S     Y  ++   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
            +D    +  L  G++  +           A   +  + V+    G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             W    ER   +++      +G  +  L F   +     W +  Y       +      
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKE-----PVKTIPWGLILSKPPVWALIVSHFCH 333
           +    +P         E K       +++       K I    +L    +W + +++   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 334 NWGTFILLTWMPTYYNQVSSFG 355
               + +L W PTY  +V  F 
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFA 283

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 22/213 (10%), Positives = 59/213 (27%), Gaps = 4/213 (1%)

Query: 70  KFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILP 129
             E         +E    +  +   + +       +  +  +   +  +    +  +   
Sbjct: 216 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275

Query: 130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALT 186
           +    ++           + +  +   +  G  +D V        GV + +   IAT + 
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335

Query: 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVT 245
            +         ++  + +G      +  +     +  P      +        YL GSV 
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395

Query: 246 GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             A   + +  FGW   F        +   + +
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 24/249 (9%), Positives = 66/249 (26%)

Query: 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV 166
           +     F    +         + +    + + +  G+I ++     LL Q   G+ +D +
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 167 GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA 226
           G +  L + +    +  A   +     L    ++   +  G  +         +    + 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 286
           + SR     +    +    G A    ++      +  + F         + +    +   
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 287 EDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346
                  A       S  S +    +     L    ++ + VS     +       +   
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250

Query: 347 YYNQVSSFG 355
           +        
Sbjct: 251 FATGEQGTR 259

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 16/187 (8%), Positives = 46/187 (24%), Gaps = 3/187 (1%)

Query: 93  VPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGY 152
                  PK WF+ +         ++     +       A         G + +      
Sbjct: 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN 272

Query: 153 LLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 212
                   +  + +GGK  L       S+    +  A         +++          +
Sbjct: 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV--ILKTLHMFEVPFLL 330

Query: 213 PAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271
                 ++    V   +    + +     L  +     +  +    G+   +   G +  
Sbjct: 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390

Query: 272 VWFTVWL 278
            +  + +
Sbjct: 391 GFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.72
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.69
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.61

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.3e-30  Score=236.19  Aligned_cols=268  Identities=15%  Similarity=0.201  Sum_probs=221.0

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH
Q 017461           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (371)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  178 (371)
                      ++.+|.++..++++++..+++...++.+.|.+. |+|++.+++|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            345788888888889999999888898888876 5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhc--cChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 017461          179 WSIATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (371)
Q Consensus       179 ~~i~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (371)
                      .+++.++++++..  .+++.++++|++.|++.|...+...++++|++|+++|++++++.+.+..+|.++++.+++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            9999998877631  27889999999999999999999999999999999999999999999999999999999887664


Q ss_pred             -cCchhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHH-----HHhhhccCCCCcccchhhhhhcChhHHHHHHHH
Q 017461          257 -FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-----LIVSSCASKEPVKTIPWGLILSKPPVWALIVSH  330 (371)
Q Consensus       257 -~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  330 (371)
                       .+||+.|++.+++.++..++.+++.++.+........++.+     ...++.+++...+....+.+++++.++......
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  258 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHh
Confidence             47999999999988888888887777766543322221111     111111122223344567788999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          331 FCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ++.....+....++|.|+.+.++++..+.+.......
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (447)
T d1pw4a_         259 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE  295 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhcchhhhhhhcccccccccchhhhhhhcch
Confidence            9999999999999999999989999999888766543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.2e-16  Score=142.36  Aligned_cols=228  Identities=11%  Similarity=0.042  Sum_probs=149.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          110 FSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      .+..+...+......+.+|. +.+++|++..++|++.+++.++..++++++|+++||+|||++++++.++..++.++..+
T Consensus        13 ~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   92 (417)
T d1pv7a_          13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI   92 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33444445555566677776 67789999999999999999999999999999999999999999999999988888877


Q ss_pred             hhccChhH----HHHHHHHHHhhhhchhhhHHHHHhcccCC--cchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhH
Q 017461          189 AAKLGLPF----LLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (371)
Q Consensus       189 ~~~~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  262 (371)
                      ..  +...    .++.+++.+.+.+...........+..++  +++....+........+..+++.+++.+.+ .+|+..
T Consensus        93 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~  169 (417)
T d1pv7a_          93 FI--FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFV  169 (417)
T ss_dssp             HT--HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred             hh--hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-cccccc
Confidence            66  4333    34455555555555544444444433322  344556777788888999999999998887 466666


Q ss_pred             HHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 017461          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (371)
Q Consensus       263 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  342 (371)
                      +........+..++.++..++.+....+.++.+.        .++..........++++..+..................
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (417)
T d1pv7a_         170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQ  241 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS--------CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHhcccccchhhhhhhhh--------hcccccccccccccccccccchhhhhHHHHHHHHhhhc
Confidence            7766666666666666666665554433222211        12222233344455555555555544444444444444


Q ss_pred             hhHHHH
Q 017461          343 WMPTYY  348 (371)
Q Consensus       343 ~~~~~l  348 (371)
                      ..+.+.
T Consensus       242 ~~~~~~  247 (417)
T d1pv7a_         242 QFANFF  247 (417)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.8e-17  Score=146.76  Aligned_cols=156  Identities=8%  Similarity=0.008  Sum_probs=138.0

Q ss_pred             hhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHh
Q 017461          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGI  206 (371)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~  206 (371)
                      .....++.+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.+  +.+.+++..++.|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~  324 (417)
T d1pv7a_         247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMF  324 (417)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHHHH
Confidence            3334444555677788888999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             hhhchhhhHHHHHhcccCCcchHHHHHHH-HHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCC
Q 017461          207 GEGVAMPAMNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       207 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  284 (371)
                      +.+...+...+++.|.+|++.|+++.++. .....+|.+++|.++|++.+..||+.+|++.+++.++..++.++..+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999985 5667899999999999999999999999999988888777776666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.3e-15  Score=136.74  Aligned_cols=160  Identities=13%  Similarity=0.042  Sum_probs=125.4

Q ss_pred             hhhhhh-hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH---HHHHHhhhhhccChhHHH
Q 017461          123 MSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALTPVAAKLGLPFLL  198 (371)
Q Consensus       123 ~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~~~~~~~~~l~  198 (371)
                      .....+ .+.+.++.+..+.++..+...++..++.++.|++.||++|++......+...   ++.++.......+.+..+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (447)
T d1pw4a_         268 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  347 (447)
T ss_dssp             HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             chhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHH
Confidence            333344 4667789999999999999999999999999999999998865544433332   223333332222678888


Q ss_pred             HHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHH
Q 017461          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (371)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~  277 (371)
                      ++.++.|++.+...+....++.|.+|++.|+++.|+.+....+ |.+++|.+.|.+.+..||+..|++.+++.++..++.
T Consensus       348 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            8889999998888889999999999999999999999887776 567789999999999999999998888777766655


Q ss_pred             hhccc
Q 017461          278 LSKAH  282 (371)
Q Consensus       278 ~~~~~  282 (371)
                      +++.+
T Consensus       428 ~~~~~  432 (447)
T d1pw4a_         428 IVVMI  432 (447)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443