Citrus Sinensis ID: 017464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MEGSEGTECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWKMPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEEQKSATMKRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSLSLYSPSSSSSKHRRLMKEGEDHSNKERATKRASTLDLTI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHcccccccccHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccHHHcccccccccccccEcccccccHHHHHHHcccccccEcc
Coil and Loop (DISEMBL)
megsegtecsktcpnssdeipddegeseenddesskpknggsssnstveendkkppvrpyvrskmprlrwtpdlHLRFVNAVEklggqeratPKLVLQMMDIKGLSIAHVKSHLQMYRSkkiddpgramadhrhlvesgdrniynlsqlpmlqgynnqsqasgfrygeASWSTAREYLMrnpyvsrslidetrsrLYGTVAEKifdgtncnwpsnnnfrmsttssalsyganstwkmpeLKEEIQTSfnrnrdpwqaqsrlrpidlnpvrqqHTKIEEQKSATMKrkatdcgkldlelslrlrpssneeesrpprqgsleekinkvdgelslslyspssssskhRRLMkegedhsnkeratkrastldlti
Flexible Loop (DISEMBL)
megsegtecsktcpnssdeipddegeseenddesskpknggsssnstveendkkppvrpyvrskmprlrwtpdlHLRFVNAveklggqeratPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIfdgtncnwpsnNNFRMSTTSSALSYGANSTWKMPELKEEIQTsfnrnrdpwqaqsrlrpidlnpvrqqhtkieeqksatmkrkatdcgkldlelslrlrpssneeesrpprqgsleekinkvdgelslslyspssssskhrrlmkegedhsnkeratkrastldlti
Low Complexity Region (SEG)
MEGSEGTECSKTCPNSSDEIPddegeseenddesskpknggsssnsTVEENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWKMPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEEQKSATMKRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGElslslyspsssssKHRRLMKEGEDHSNKERATKRASTLDLTI
Disordered region (IsUnstruct)
******************************************************************RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY***********************RNIYNLSQLPMLQGYN****ASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNN**********************************************************************************************************************************************************
Disordered Region (DISOPRED)
********************************************************************RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY*******************************************************************************************************************************************************************************************************************************************************STLDLTI
Disordered Region (DISEMBL)
********************************************************VRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWKMPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHT***************DCGKLDLELSLRLR**************SLEEKINKVDGELSLSLY************************************
Disordered Region (DISPRO)
***************************************************************KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID*******************************YNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDG********************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGSEGTECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWKMPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEEQKSATMKRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSLSLYSPSSSSSKHRRLMKEGEDHSNKERATKRASTLDLTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q700D9	255	Putative Myb family trans	no	no	0.191	0.278	0.690	5e-24
Q9C616	388	Probable transcription fa	no	no	0.226	0.216	0.564	9e-20
Q93WJ9	403	Transcription repressor K	no	no	0.204	0.188	0.597	8e-19
Q0J235	532	Probable transcription fa	no	no	0.185	0.129	0.642	2e-18
Q9FJV5	276	Probable transcription fa	no	no	0.169	0.228	0.619	8e-18
Q941I2	322	Probable transcription fa	no	no	0.156	0.180	0.637	5e-17
Q9SAK5	358	Myb family transcription	no	no	0.175	0.181	0.522	3e-14
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.164	0.147	0.573	4e-14
Q9LZJ8	426	Putative two-component re	no	no	0.299	0.260	0.346	1e-09
Q9FFH0	386	Transcription activator G	no	no	0.169	0.163	0.438	6e-09

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 61/71 (85%)

Query: 57  VRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQM 116
           VRPYVRS +PRLRWTP+LH  FV+AV+ LGGQ +ATPKLVL++MD+KGL+I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 117 YRSKKIDDPGR 127
           YR  +I   G+
Sbjct: 75  YRGSRITLLGK 85

Putative transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 56  PVRPYVRS-KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
           P  P  RS + PR+RWT  LH RFV+AVE LGG ERATPK VL++MD+K L++AHVKSHL
Sbjct: 203 PRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 262

Query: 115 QMYRSKKIDDPGRAMADHRHLVESG 139
           QMYR+ K  D   A +    + E+G
Sbjct: 263 QMYRTVKTTDKAAASSGQSDVYENG 287

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 56  PVRPYVRS-KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
           P  P  RS + PR+RWT  LH RFV+AVE LGG ERATPK VL++MD+K L++AHVKSHL
Sbjct: 209 PKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 268

Query: 115 QMYRSKKIDDPGRAMAD 131
           QMYR+ K  +   A +D
Sbjct: 269 QMYRTVKTTNKPAASSD 285

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 56  PVRPYVRS-KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
           P  P  RS + PR+RWT  LH RFV+AVE LGG ERATPK VL++MD+K L++AHVKSHL
Sbjct: 314 PKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 373

Query: 115 QMYRSKKIDD 124
           QMYR+ K  D
Sbjct: 374 QMYRTVKSTD 383

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 50/63 (79%)

Query: 64  KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID 123
           + PR+RWT  LH  FV+AV+ LGG ERATPK VL++M++K L++AHVKSHLQMYR+ K  
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query: 124 DPG 126
           D G
Sbjct: 164 DKG 166

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 64  KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121
           + PR+RWT  LH  FV+AV+ LGG ERATPK VL++MD++ L++AHVKSHLQMYR+ K
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 2/67 (2%)

Query: 66  PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDP 125
           PRLRWT +LH RFV+AV +LGG ++ATPK ++++M +KGL++ H+KSHLQ +R  K   P
Sbjct: 35  PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK--QP 92

Query: 126 GRAMADH 132
            +   DH
Sbjct: 93  HKEYGDH 99

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 46/61 (75%)

Query: 61  VRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120
           V +   R+RWTP+LH  FV AV +LGG ERATPK VL++++  GL+I HVKSHLQ YR+ 
Sbjct: 227 VATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTA 286

Query: 121 K 121
           +
Sbjct: 287 R 287

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 13/124 (10%)

Query: 14  PNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKPPVRPYVRSKMPRLRWTPD 73
           P  S  +  D  E ++ + ++    N   S N+   + +K P       +K PR++WTP+
Sbjct: 167 PGESGTVESDPDEYDDLEQDNLYESNEEGSKNTCDHKEEKSP-------TKKPRMQWTPE 219

Query: 74  LHLRFVNAVEKLGGQERATPKLVLQMM----DIKGLSIAHVKSHLQMYR--SKKIDDPGR 127
           LH +F  AVEK+G  E+A PK +L+ M    +++GL+  +V SHLQ YR  SKK   P  
Sbjct: 220 LHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYRQSSKKTCTPQE 279

Query: 128 AMAD 131
              D
Sbjct: 280 PQED 283

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 10/73 (13%)

Query: 49  EENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIA 108
           +END K         K P++ WTP+LH +FV AVE+L G ++A P  +L++M++K L+  
Sbjct: 140 DENDIK---------KKPKVDWTPELHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRH 189

Query: 109 HVKSHLQMYRSKK 121
           +V SHLQ YRS +
Sbjct: 190 NVASHLQKYRSHR 202

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
225439489	370	PREDICTED: uncharacterized protein LOC10	0.929	0.932	0.522	2e-80
297735637	403	unnamed protein product [Vitis vinifera]	0.929	0.856	0.522	2e-80
356566701	367	PREDICTED: uncharacterized protein LOC10	0.929	0.940	0.493	4e-67
255587413	182	conserved hypothetical protein [Ricinus	0.490	1.0	0.698	5e-67
356503105	346	PREDICTED: uncharacterized protein LOC10	0.902	0.968	0.463	3e-64
359486487	376	PREDICTED: uncharacterized protein LOC10	0.870	0.859	0.433	2e-60
357506085	350	Two-component response regulator ARR10 [	0.754	0.8	0.485	2e-60
297736575	491	unnamed protein product [Vitis vinifera]	0.722	0.545	0.459	2e-59
79570100	340	myb-like HTH transcriptional regulator-l	0.797	0.870	0.479	2e-57
297827389	338	DNA binding protein [Arabidopsis lyrata	0.805	0.884	0.456	2e-56

>gi|225439489|ref|XP_002268055.1| PREDICTED: uncharacterized protein LOC100265991 [Vitis vinifera] gi|147820277|emb|CAN73581.1| hypothetical protein VITISV_002087 [Vitis vinifera]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 207/396 (52%), Positives = 249/396 (62%), Gaps = 51/396 (12%)

Query: 1   MEGSEGTECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKP---PV 57
           ME S   E SKT P+  +E    + +  E +D   K KN  SSSNSTVEEN+KK     V
Sbjct: 1   MEESHCAEGSKTSPSEQNE----DEDESEENDSEGKHKNCRSSSNSTVEENEKKGHSGAV 56

Query: 58  RPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117
           RPYVRSKMPRLRWTPDLHLRFV+AVE+LGGQERATPKLVLQ+M+IKGL+IAHVKSHLQMY
Sbjct: 57  RPYVRSKMPRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLNIAHVKSHLQMY 116

Query: 118 RSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREY 177
           RSKKI+DPG+ +ADHRHLVESGD NIYNLSQLPMLQG  NQ   S FRYG+ASWS A E 
Sbjct: 117 RSKKIEDPGQVLADHRHLVESGDPNIYNLSQLPMLQGL-NQRPTSSFRYGDASWS-AHEN 174

Query: 178 LMRNPYVSRSLIDE-TRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWK 236
            M +P++ RS +D+ TR   YG+V E+IF G N N  ++ NF M T     S    STW 
Sbjct: 175 WMHSPFIGRSSVDKTTRPGFYGSVTERIFGGNNNN-STSCNFHMGT-----SLNEYSTWG 228

Query: 237 MPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEE------------------ 278
               K+  QTSF+ + + W+ Q+     +LN + Q    + E                  
Sbjct: 229 THVRKDSFQTSFH-DHESWRGQAGSSLKELNQLTQMQAHVRERREHMSLKSRIPSDMNTA 287

Query: 279 ---QKSATMKRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSLSLY 335
              Q+  T+KRKA+DC  LDL LSL+L P  N+E +R      LE+  N+VD        
Sbjct: 288 TNLQEWRTVKRKASDC-DLDLNLSLKLTP-RNDETAR-----GLED--NEVDSCNLSLSL 338

Query: 336 SPSSSSSKHRRLMKEGEDHSNKERATKRASTLDLTI 371
              SSS   R  +KEG D S  E AT RASTLDLTI
Sbjct: 339 YSPSSSKLSR--LKEGRDDS-MEHAT-RASTLDLTI 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735637|emb|CBI18131.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 207/396 (52%), Positives = 249/396 (62%), Gaps = 51/396 (12%)

Query: 1   MEGSEGTECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKP---PV 57
           ME S   E SKT P+  +E    + +  E +D   K KN  SSSNSTVEEN+KK     V
Sbjct: 34  MEESHCAEGSKTSPSEQNE----DEDESEENDSEGKHKNCRSSSNSTVEENEKKGHSGAV 89

Query: 58  RPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117
           RPYVRSKMPRLRWTPDLHLRFV+AVE+LGGQERATPKLVLQ+M+IKGL+IAHVKSHLQMY
Sbjct: 90  RPYVRSKMPRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLNIAHVKSHLQMY 149

Query: 118 RSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREY 177
           RSKKI+DPG+ +ADHRHLVESGD NIYNLSQLPMLQG  NQ   S FRYG+ASWS A E 
Sbjct: 150 RSKKIEDPGQVLADHRHLVESGDPNIYNLSQLPMLQGL-NQRPTSSFRYGDASWS-AHEN 207

Query: 178 LMRNPYVSRSLIDE-TRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWK 236
            M +P++ RS +D+ TR   YG+V E+IF G N N  ++ NF M T     S    STW 
Sbjct: 208 WMHSPFIGRSSVDKTTRPGFYGSVTERIFGGNNNN-STSCNFHMGT-----SLNEYSTWG 261

Query: 237 MPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEE------------------ 278
               K+  QTSF+ + + W+ Q+     +LN + Q    + E                  
Sbjct: 262 THVRKDSFQTSFH-DHESWRGQAGSSLKELNQLTQMQAHVRERREHMSLKSRIPSDMNTA 320

Query: 279 ---QKSATMKRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSLSLY 335
              Q+  T+KRKA+DC  LDL LSL+L P  N+E +R      LE+  N+VD        
Sbjct: 321 TNLQEWRTVKRKASDC-DLDLNLSLKLTP-RNDETAR-----GLED--NEVDSCNLSLSL 371

Query: 336 SPSSSSSKHRRLMKEGEDHSNKERATKRASTLDLTI 371
              SSS   R  +KEG D S  E AT RASTLDLTI
Sbjct: 372 YSPSSSKLSR--LKEGRDDS-MEHAT-RASTLDLTI 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566701|ref|XP_003551568.1| PREDICTED: uncharacterized protein LOC100802192 [Glycine max]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 187/379 (49%), Positives = 239/379 (63%), Gaps = 34/379 (8%)

Query: 7   TECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKPPVRPYVRSKMP 66
           +ECSKT P++ ++  + EG  +E+   ++      SSSNSTVEEN+KK  VRPYVRSKMP
Sbjct: 9   SECSKTSPSNEEDCEESEGYEDESKQNNNNGG---SSSNSTVEENEKKTTVRPYVRSKMP 65

Query: 67  RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPG 126
           RLRWTPDLHLRFV+AV++LGGQERATPKLVLQ+M+IKGLSIAHVKSHLQMYRSKK+ D  
Sbjct: 66  RLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKV-DTN 124

Query: 127 RAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTA-REYLMRNPYVS 185
           + +AD R LVE+GDRN+YNLSQLPMLQGY N SQ+S +RYG    S A  E ++  P+++
Sbjct: 125 QVLADPRFLVETGDRNVYNLSQLPMLQGY-NPSQSSSYRYGYGDASLAIYENMVHRPFMN 183

Query: 186 RSLIDETRSRLYGTVAEKIFDGT--NCNWPSNNNFRMSTTSSALSYGANSTWKMPELKEE 243
           RS +DE+ +   G+   +   GT  N NW  N    M    S+ S+   ST K+ E K +
Sbjct: 184 RSSLDESGAEFCGSRLTERIHGTNSNINWTRN----MFQVDSSSSFNEPSTSKVQEPKHK 239

Query: 244 IQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEE----QKSA-------TMKRKATDCG 292
              SF  N      Q ++  +DL+   Q     +E     K A       T+KRKA+D  
Sbjct: 240 F-FSFGGNESSC-TQIKMSQVDLHQSTQLQPGAQELMPNNKFATNEVELKTLKRKASDI- 296

Query: 293 KLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSLSLYSPSSSSSKHRRLMKEGE 352
            LDL LSL+L    N E      QGS+ +    VD  LSLSL S SSS S +R  +K  +
Sbjct: 297 DLDLNLSLKLNSRVNAE-----NQGSMVDH-EVVDSNLSLSLCSQSSSFSSNR--LKNSQ 348

Query: 353 DHSNKERATKRASTLDLTI 371
           DHS ++    RAS LDLTI
Sbjct: 349 DHSKEQGEIIRASALDLTI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587413|ref|XP_002534265.1| conserved hypothetical protein [Ricinus communis] gi|223525618|gb|EEF28118.1| conserved hypothetical protein [Ricinus communis]

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 154/186 (82%), Gaps = 4/186 (2%)

Query: 1   MEGSEGTECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKPPVRPY 60
           M GS+ + CS+T   +S +  +DE  S END + S PKNG SSSNSTVEE+DKKP VRPY
Sbjct: 1   MVGSDQSGCSET--KASRQNQEDESGSGENDGDESMPKNGASSSNSTVEESDKKPSVRPY 58

Query: 61  VRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120
           VRSKMPRLRWTP+LHL FV AVE+LGGQ+RATPKLVLQ+M++ GLSIAHVKSHLQMYRSK
Sbjct: 59  VRSKMPRLRWTPELHLCFVKAVERLGGQDRATPKLVLQLMNVNGLSIAHVKSHLQMYRSK 118

Query: 121 KIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMR 180
           KIDDP + MADHRHL++SGDRNIYNLSQLPMLQGY +Q  AS +RYG+ASW+ ARE  + 
Sbjct: 119 KIDDPSQVMADHRHLMKSGDRNIYNLSQLPMLQGY-HQRHASSYRYGDASWN-ARENFVY 176

Query: 181 NPYVSR 186
           N ++ R
Sbjct: 177 NSHMGR 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503105|ref|XP_003520352.1| PREDICTED: uncharacterized protein LOC100801120 [Glycine max]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 177/382 (46%), Positives = 228/382 (59%), Gaps = 47/382 (12%)

Query: 1   MEGSEGTECSKTCPNSSDEIPDDEGESEENDDESSKPKNGGSSSNSTVEENDKKPPVRPY 60
           M  S G++CSKT P++ DE  DDEGESE N+D+S +  NGGSSSNSTVEEN+KK  +RPY
Sbjct: 1   MGESSGSQCSKTSPSNIDE--DDEGESEANEDQSKQNNNGGSSSNSTVEENEKK--IRPY 56

Query: 61  VRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120
           VRSKMPRLRWTPDLHLRF++AV++LGGQERATPKLVLQ+M+IK LSIAHVKSHLQM+RSK
Sbjct: 57  VRSKMPRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKSLSIAHVKSHLQMFRSK 116

Query: 121 KIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMR 180
           K+DD  +  ADH  LVE+GD+NIYNLSQL MLQGY N SQ+S F Y              
Sbjct: 117 KVDDRNQVFADHNSLVETGDKNIYNLSQLSMLQGY-NPSQSSSFSY-------------T 162

Query: 181 NPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTWKMPEL 240
           N Y S    D +   +Y  + ++ FD +N          +S+   +  +G  S  K+ E 
Sbjct: 163 NNYPSYGFGDASFG-VYEKLLQRPFDWSNA---------ISSREGSSIFGEQS--KIREP 210

Query: 241 KEEIQTSFNRNRDPWQAQSRLRPIDLNP---VRQQHTK--------IEEQKSATMKRKAT 289
           K+E   SF  +       +RL  +D  P   + QQ  +          + +  T+KRKA+
Sbjct: 211 KDEF-LSFGAHDHSLSTPTRLSHVDHTPPINIMQQIAQNLMPINPTTNQPELKTLKRKAS 269

Query: 290 DCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSLSLYSPSSSSSKHRRLMK 349
           D   LDL+LSL+L    N+ E     +G+L                  SSSS+   RL+K
Sbjct: 270 DHTTLDLDLSLKLNSKINDAE-----EGTLNNHEVDSTNLSLSLCSQLSSSSNPSSRLIK 324

Query: 350 EGEDHSNKERATKRASTLDLTI 371
           E +     E+    ASTLDLTI
Sbjct: 325 EAQQDRCDEQGKIMASTLDLTI 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486487|ref|XP_002273049.2| PREDICTED: uncharacterized protein LOC100263821 [Vitis vinifera]

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/360 (43%), Positives = 213/360 (59%), Gaps = 37/360 (10%)

Query: 32  DESSKPKNGGSSSNSTVEENDKKP---PVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQ 88
           DE  K KNGGSSSNSTVEE+++K     VR YVRSKMPRLRWTPDLHL F++AVE+LGGQ
Sbjct: 34  DEYKKTKNGGSSSNSTVEESERKAGSGSVRRYVRSKMPRLRWTPDLHLCFLHAVERLGGQ 93

Query: 89  ERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQ 148
           +RATPKLVLQ+MDIKGLSI+HVKSHLQMYRSKKIDDP + M +    +E GD +IY LS 
Sbjct: 94  DRATPKLVLQLMDIKGLSISHVKSHLQMYRSKKIDDPNQVMMEQGLFIEGGDHHIYKLSH 153

Query: 149 LPMLQGYNNQSQASGFRY--GEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFD 206
           LPMLQ +N +   SGFRY    ASW  +      +PY      D +++  Y +V+E+IF 
Sbjct: 154 LPMLQSFNRRPDTSGFRYDSASASWRASMANQTYSPYRGGDASDRSKNGGYSSVSERIFR 213

Query: 207 GTNCNWPSNNNFRMSTTSSALSYGANSTW-KMPELKEEIQTSFNRNRDPWQAQSR----- 260
               +   N  F +  +    S+   +TW      +EE Q  ++++   W++Q R     
Sbjct: 214 SNKGSSVLNYEFHVGNS----SFNGQATWNNAHHTREEFQL-YSQSHGSWRSQIRPSSIQ 268

Query: 261 ---LRPIDLNPVRQQHTKI------EEQKSATMKRKATDCGKLDLELSLRLRPSSNEEES 311
              L+P  L   +QQ  ++      +E +   +KRK++D    DL+L+L L+P+      
Sbjct: 269 SNYLQPQVLESRKQQVNRLNNPPPPQENQKTMLKRKSSDS-NFDLDLNLSLKPA------ 321

Query: 312 RPPRQGSLEEKINKVDGELSLSLYSPSSSSSKHRRLMKEGEDHSNKERATKRASTLDLTI 371
            P       EK++  + + SLSL   S   SK  R+ KEG+      +  + ASTLDLT+
Sbjct: 322 -PKSHDHHLEKMDSTEIDSSLSLSLFSPPPSKLSRV-KEGD---GSRKHAEGASTLDLTL 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506085|ref|XP_003623331.1| Two-component response regulator ARR10 [Medicago truncatula] gi|355498346|gb|AES79549.1| Two-component response regulator ARR10 [Medicago truncatula]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/319 (48%), Positives = 203/319 (63%), Gaps = 39/319 (12%)

Query: 2   EGSEGTECSKTCPNSSDEIPDDEGE-SEENDDESSKPKN----GGSSSNSTVEEN-DKKP 55
           E + G+ECSK    +S  I +D  E SE N+DE S  +N    G SSSNST+EEN +KK 
Sbjct: 4   EEAYGSECSK----ASISINEDGCEISEGNEDEESNKQNINNGGISSSNSTIEENCEKKS 59

Query: 56  PVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ 115
            VRPYVRSK PRLRWTPDLH RF++AV++LGGQERATPKLVLQ+M+IKGLSIAHVKSHLQ
Sbjct: 60  SVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 119

Query: 116 MYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFR---YGEASWS 172
           MYRSKK+ D  + +ADHR LV++GDRN+YNL+QLPMLQGY   +Q S +R   YG+AS +
Sbjct: 120 MYRSKKVVDTNQVLADHRLLVDNGDRNVYNLTQLPMLQGY-TPNQTSSYRCGSYGDASLA 178

Query: 173 TAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGAN 232
                 M    V  S I ++R+  YG + E+  +    N   ++ F+M ++    ++   
Sbjct: 179 ------MYENMVQMSSISDSRADFYGKMIERTNNNI-INIQGHSIFQMDSS----NFREL 227

Query: 233 STWKMPELKEEIQTSFNRN--RDPWQAQSRLRPIDLN---PVRQQHTKIEEQKSATMKRK 287
           ST K+ E  +   +       RD  Q Q R + +  N   P  Q    +EE K  TMKRK
Sbjct: 228 STTKVHEPNDNFLSFCGHESLRDDLQVQPRAQDLISNDNLPANQ----VEELK--TMKRK 281

Query: 288 ATDCGKLDLELSLRLRPSS 306
           A+D   +DLEL L L+ +S
Sbjct: 282 ASD---MDLELDLSLKLNS 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736575|emb|CBI25446.3| unnamed protein product [Vitis vinifera]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/294 (45%), Positives = 183/294 (62%), Gaps = 26/294 (8%)

Query: 32  DESSKPKNGGSSSNSTVEENDKKP---PVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQ 88
           DE  K KNGGSSSNSTVEE+++K     VR YVRSKMPRLRWTPDLHL F++AVE+LGGQ
Sbjct: 127 DEYKKTKNGGSSSNSTVEESERKAGSGSVRRYVRSKMPRLRWTPDLHLCFLHAVERLGGQ 186

Query: 89  ERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQ 148
           +RATPKLVLQ+MDIKGLSI+HVKSHLQMYRSKKIDDP + M +    +E GD +IY LS 
Sbjct: 187 DRATPKLVLQLMDIKGLSISHVKSHLQMYRSKKIDDPNQVMMEQGLFIEGGDHHIYKLSH 246

Query: 149 LPMLQGYNNQSQASGFRY--GEASWSTAREYLMRNPYVSRSLIDETRSRLYGTVAEKIFD 206
           LPMLQ +N +   SGFRY    ASW  +      +PY      D +++  Y +V+E+IF 
Sbjct: 247 LPMLQSFNRRPDTSGFRYDSASASWRASMANQTYSPYRGGDASDRSKNGGYSSVSERIFR 306

Query: 207 GTNCNWPSNNNFRMSTTSSALSYGANSTW-KMPELKEEIQTSFNRNRDPWQAQSR----- 260
               +   N  F +  +    S+   +TW      +EE Q  ++++   W++Q R     
Sbjct: 307 SNKGSSVLNYEFHVGNS----SFNGQATWNNAHHTREEFQL-YSQSHGSWRSQIRPSSIQ 361

Query: 261 ---LRPIDLNPVRQQHTKI------EEQKSATMKRKATDCGKLDLELSLRLRPS 305
              L+P  L   +QQ  ++      +E +   +KRK++D    DL+L+L L+P+
Sbjct: 362 SNYLQPQVLESRKQQVNRLNNPPPPQENQKTMLKRKSSD-SNFDLDLNLSLKPA 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79570100|ref|NP_181364.2| myb-like HTH transcriptional regulator-like protein [Arabidopsis thaliana] gi|26450454|dbj|BAC42341.1| unknown protein [Arabidopsis thaliana] gi|28827324|gb|AAO50506.1| unknown protein [Arabidopsis thaliana] gi|330254426|gb|AEC09520.1| myb-like HTH transcriptional regulator-like protein [Arabidopsis thaliana]

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 164/342 (47%), Positives = 205/342 (59%), Gaps = 46/342 (13%)

Query: 43  SSNSTVEENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDI 102
           SSNSTVEE+DKK  VRPYVRSK+PRLRWTPDLHLRFV AVE+LGGQERATPKLV QMM+I
Sbjct: 32  SSNSTVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNI 91

Query: 103 KGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVE-SGDRNIYNLSQLPMLQGYNNQSQA 161
           KGLSIAHVKSHLQMYRSKKIDD G+A+A H+HL E S DRNIY LSQLPM +GY N +  
Sbjct: 92  KGLSIAHVKSHLQMYRSKKIDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGY-NHNHD 150

Query: 162 SGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLY--GTVAEKIFDGTNCNWPSNNNFR 219
           S FRYG +  S A  +   +    RSLID+ R  L    +V+  I  G++  W +N +F+
Sbjct: 151 SPFRYG-SKISNASLWNSSSQGTERSLIDQIRPGLIRNASVSNNI-RGSDY-WTNNKSFQ 207

Query: 220 MSTTSSALSYGANSTWKMPELKEEIQTSFNR-NRDPWQAQSRLRPIDLNPVRQQHTKIEE 278
              +SS  ++        P+L+ +     N    +  Q  SR         ++ H  +EE
Sbjct: 208 NIYSSSISNH-------FPKLRHDHHERTNSVTFNSIQGHSR-------TFQKFHNGVEE 253

Query: 279 QKSATM------KRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSL---EEKINKVDGE 329
             + +       KR A+    +DL+LSL+L         R P +  L   E      D  
Sbjct: 254 NTNHSYCSKTNGKRDASRS--IDLDLSLKL---------RQPEKTILEETETAATTTDQT 302

Query: 330 LSLSLYSPSSSSSKHRRLMKEGEDHSNKERATKRASTLDLTI 371
           LSLSL  P SSS K  RLMK+ ED + K     + STLDLT+
Sbjct: 303 LSLSL-CPGSSSWKKSRLMKDEEDRTVK---IGQESTLDLTL 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827389|ref|XP_002881577.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297327416|gb|EFH57836.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/342 (45%), Positives = 205/342 (59%), Gaps = 43/342 (12%)

Query: 43  SSNSTVEENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDI 102
           SSNSTVEE+DKK  VRPYVRSK+PRLRWTPDLHLRFV AVE+LGGQERATPKLV QMM+I
Sbjct: 27  SSNSTVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNI 86

Query: 103 KGLSIAHVKSHLQMYRSKKIDDPGRAMADHRHLVE-SGDRNIYNLSQLPMLQGYNNQSQA 161
           KGLSIAHVKSHLQMYRSKKIDD G+A+ADH+HL E S DRNIY LSQLPM +GY N++  
Sbjct: 87  KGLSIAHVKSHLQMYRSKKIDDQGQAIADHKHLFETSTDRNIYKLSQLPMFRGY-NRNYD 145

Query: 162 SGFRYGEASWSTAREYLMRNPYVSRSLIDETRSRLY--GTVAEKIFDGTNCNWPSNNNFR 219
           S FRYG + +S A  +   +    RSLI++ R  L    +V+  I  G+   W +N +F+
Sbjct: 146 SPFRYG-SKFSNASLWNSSSHGTDRSLIEQIRPGLIRSSSVSNNI-RGSEY-WTNNRSFK 202

Query: 220 MSTTSSALSYGANSTWKMPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQ------- 272
              +SS  ++       +P+L+ +              Q R  P+  N ++         
Sbjct: 203 NIYSSSISNH-------LPKLRHD-------------HQERTNPVTFNSMQGHSRTFQKF 242

Query: 273 HTKIEEQKSATMKRKATDCGKLDLELSLRLRPSSNEEESRPPRQGSLEEKINKVDGELSL 332
           H  +EE  +     K T  GK +   S+ L    + +  +P +    E +      + +L
Sbjct: 243 HIGVEESTNHAYFSKTT--GKRNASTSIDLDLDLSLKLRQPEKTILEETETATTTTDQTL 300

Query: 333 SL-YSPSSSSSKHRRLMKEGEDHSNKERATK--RASTLDLTI 371
           SL   P SSS K  RL+K+ E+    +R  K  +ASTLDLT+
Sbjct: 301 SLSLCPGSSSWKKSRLIKKDEE----DRTVKIGQASTLDLTL 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2042927	340	AT2G38300 "AT2G38300" [Arabido	0.657	0.717	0.523	2.4e-51
TAIR|locus:2063141	410	AT2G40260 "AT2G40260" [Arabido	0.388	0.351	0.547	3.2e-43
TAIR|locus:2041539	255	AT2G42660 "AT2G42660" [Arabido	0.218	0.317	0.695	2.5e-26
TAIR|locus:2204518	255	AT1G14600 "AT1G14600" [Arabido	0.177	0.258	0.727	3.5e-25
TAIR|locus:2041145	256	AT2G02060 [Arabidopsis thalian	0.299	0.433	0.532	1.1e-23
TAIR|locus:2125771	166	AT4G04580 "AT4G04580" [Arabido	0.223	0.5	0.493	9.2e-20
TAIR|locus:2163852	276	ATS "AT5G42630" [Arabidopsis t	0.433	0.583	0.363	1.5e-19
TAIR|locus:2028346	388	KAN2 "AT1G32240" [Arabidopsis	0.234	0.224	0.560	8.7e-19
TAIR|locus:2171427	403	KAN "KANADI" [Arabidopsis thal	0.204	0.188	0.597	1.8e-17
UNIPROTKB|Q0J235	532	RL9 "Probable transcription fa	0.188	0.131	0.638	1.1e-16

TAIR|locus:2042927 AT2G38300 "AT2G38300" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 136/260 (52%), Positives = 167/260 (64%)

Query:    47 TVEENDKKPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLS 106
             TVEE+DKK  VRPYVRSK+PRLRWTPDLHLRFV AVE+LGGQERATPKLV QMM+IKGLS
Sbjct:    36 TVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLS 95

Query:   107 IAHVKSHLQMYRSKKIDDPGRAMADHRHLVE-SGDRNIYNLSQLPMLQGYNNQSQASGFR 165
             IAHVKSHLQMYRSKKIDD G+A+A H+HL E S DRNIY LSQLPM +GYN+    S FR
Sbjct:    96 IAHVKSHLQMYRSKKIDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGYNHNHD-SPFR 154

Query:   166 YGEASWSTAREYLMRNPYVSRSLIDETRSRLY--GTVAEKIFDGTNCNWPSNNNFRMSTT 223
             YG +  S A  +   +    RSLID+ R  L    +V+  I  G++  W +N +F+ +  
Sbjct:   155 YG-SKISNASLWNSSSQGTERSLIDQIRPGLIRNASVSNNI-RGSDY-WTNNKSFQ-NIY 210

Query:   224 SSALSYGANSTWKMPELKEEIQTSFNRNRDPWQAQSRLRPIDLNPVRQQHTKIEEQKSAT 283
             SS++S   N   K+     E   S   N    Q  SR      N V +++T         
Sbjct:   211 SSSIS---NHFPKLRHDHHERTNSVTFNSI--QGHSRTFQKFHNGV-EENTNHSYCSKTN 264

Query:   284 MKRKATDCGKLDLELSLRLR 303
              KR A+    +DL+LSL+LR
Sbjct:   265 GKRDASR--SIDLDLSLKLR 282

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063141 AT2G40260 "AT2G40260" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 81/148 (54%), Positives = 102/148 (68%)

Query:    49 EENDKKP-PVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSI 107
             ++N K    VRPY RSK PRLRWTP+LH+ F+ AVE+LGG +RATPKLVLQ+M++KGLSI
Sbjct:    65 DQNKKNGGSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSI 124

Query:   108 AHVKSHLQMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYG 167
             AHVKSHLQMYRSKK D+P     D     E G    YNLSQLPMLQ ++ Q  +S   YG
Sbjct:   125 AHVKSHLQMYRSKKTDEPNEG--DQGFSFEHGAGYTYNLSQLPMLQSFD-QRPSSSLGYG 181

Query:   168 EASWSTAREYLMRNPYVSRSLIDETRSR 195
               SW+  R  + R+P+   +  + TR+R
Sbjct:   182 GGSWTDHRRQIYRSPWRGLTTRENTRTR 209

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041539 AT2G42660 "AT2G42660" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 57/82 (69%), Positives = 69/82 (84%)

Query:    47 TVEENDK-KPPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGL 105
             +VE+ D+    VR Y+RS MPRLRWTPDLHL FV AV++LGG +RATPKLVL+MM++KGL
Sbjct:    31 SVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGL 90

Query:   106 SIAHVKSHLQMYRSKKIDDPGR 127
             SIAHVKSHLQMYRSKK++   R
Sbjct:    91 SIAHVKSHLQMYRSKKLEPSSR 112

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204518 AT1G14600 "AT1G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 48/66 (72%), Positives = 59/66 (89%)

Query:    57 VRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQM 116
             VRPYVRS +PRLRWTP+LH  FV+AV+ LGGQ +ATPKLVL++MD+KGL+I+HVKSHLQM
Sbjct:    15 VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query:   117 YRSKKI 122
             YR  +I
Sbjct:    75 YRGSRI 80

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041145 AT2G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 65/122 (53%), Positives = 82/122 (67%)

Query:    57 VRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQM 116
             VRPYVRS +PRLRWTPDLH  FV+AVE LGGQ RATPKLVL+MMD+KGL+I+HVKSHLQM
Sbjct:    21 VRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQM 80

Query:   117 YR--SK-KIDDPGRAMADHRHLVESGDRNIY---NLS---QLPMLQGYNN--QSQASGFR 165
             YR  SK  ++ P  + +      +  + + Y   NLS   +   L G+++   S  S FR
Sbjct:    81 YRGGSKLTLEKPEESSSSSIRRRQDSEEDYYLHDNLSLHTRNDCLLGFHSFPLSSHSSFR 140

Query:   166 YG 167
              G
Sbjct:   141 GG 142

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2125771 AT4G04580 "AT4G04580" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 41/83 (49%), Positives = 60/83 (72%)

Query:    55 PPVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
             P VR Y+RS  PR+ WT DL +RF+  +EKLGG+E ATPK +L +M ++ L+I+HVKSHL
Sbjct:     4 PMVRSYIRSDNPRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHL 63

Query:   115 QMYRSKKIDDPGRAMADHRHLVE 137
             QMYR+KK ++  + +   R + +
Sbjct:    64 QMYRNKKKEESSKEIKMMREMTQ 86

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2163852 ATS "AT5G42630" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 64/176 (36%), Positives = 92/176 (52%)

Query:    64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID 123
             + PR+RWT  LH  FV+AV+ LGG ERATPK VL++M++K L++AHVKSHLQMYR+ K  
Sbjct:   104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query:   124 D---PGRAMADHRHLVESGDRNIYNLSQLPMLQGYNNQSQASGFRYGEASWSTAREYLMR 180
             D   PG    +        D N  N  +       N+ + +S  +   ASWS+ +E    
Sbjct:   164 DKGSPGEGKVEKEAEQRIEDNN--NNEEADEGTDTNSPNSSSVQKTQRASWSSTKE---- 217

Query:   181 NPYVSRSLIDETRSRLYGTV--AEKIFDGTNCNWPSNNNFRMSTTSSALSYGANST 234
                VSRS+  +  S L GT    +   +  + N   N +F +   S  + Y   S+
Sbjct:   218 ---VSRSISTQAYSHL-GTTHHTKDNEEKEDTNIHLNLDFTLGRPSWGMEYAEPSS 269

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0048481 "ovule development" evidence=IMP

GO:0080060 "integument development" evidence=IGI;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2028346 KAN2 "AT1G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 8.7e-19, P = 8.7e-19
 Identities = 51/91 (56%), Positives = 62/91 (68%)

Query:    56 PVRPYVRS-KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
             P  P  RS + PR+RWT  LH RFV+AVE LGG ERATPK VL++MD+K L++AHVKSHL
Sbjct:   203 PRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 262

Query:   115 QMYRSKKIDDPGRAMADHRHLVE---SGDRN 142
             QMYR+ K  D   A +    + E   SGD N
Sbjct:   263 QMYRTVKTTDKAAASSGQSDVYENGSSGDNN 293

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2171427 KAN "KANADI" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query:    56 PVRPYVRS-KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
             P  P  RS + PR+RWT  LH RFV+AVE LGG ERATPK VL++MD+K L++AHVKSHL
Sbjct:   209 PKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 268

Query:   115 QMYRSKKIDDPGRAMAD 131
             QMYR+ K  +   A +D
Sbjct:   269 QMYRTVKTTNKPAASSD 285

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J235 RL9 "Probable transcription factor RL9" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 227 (85.0 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 46/72 (63%), Positives = 55/72 (76%)

Query:    56 PVRPYVRS-KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114
             P  P  RS + PR+RWT  LH RFV+AVE LGG ERATPK VL++MD+K L++AHVKSHL
Sbjct:   314 PKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 373

Query:   115 QMYRS-KKIDDP 125
             QMYR+ K  D P
Sbjct:   374 QMYRTVKSTDKP 385

GO:0005634 "nucleus" evidence=IDA

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001306001 SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_115, whole genome shotgun sequence); (370 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	7e-21
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-06

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 84.8 bits (210), Expect = 7e-21
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 66  PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121
           PR+ WT DLH RF+ AV+KLGG + ATPK +L++M + GL+   V SHLQ YR K+
Sbjct: 2   PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 64  KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121
           K  ++ WTP+LH RFV+AVE+L G E+A P  +L++M ++ L+  ++ SHLQ YRS +
Sbjct: 234 KKAKVDWTPELHRRFVHAVEQL-GVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 67  RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118
           R  WTP+     + AV+K G         + + +   G +    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.05
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	94.2
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	93.93
smart00426	68	TEA TEA domain.	93.82
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	81.01

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=4.5e-23  Score=204.28  Aligned_cols=63  Identities=43%  Similarity=0.725  Sum_probs=59.0

Q ss_pred             ccCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccCC
Q 017464           61 VRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDD  124 (371)
Q Consensus        61 ~r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~~  124 (371)
                      ...||+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||++++..
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l  293 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL  293 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            34689999999999999999999999 7999999999999999999999999999999987644

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=5.7e-22  Score=150.12  Aligned_cols=56  Identities=55%  Similarity=0.901  Sum_probs=54.2

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~  120 (371)
                      |+|++||+|+|.+||+||+.||+.+.|+||.|+++|++++||+.||+|||||||++
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999998789999999999999999999999999999986

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.05  E-value=9.8e-06  Score=57.97  Aligned_cols=48  Identities=25%  Similarity=0.332  Sum_probs=41.8

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      |..||++.+..|++||.++|..   .++.|.+.|+ .+.|..+|++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999932   5899999999 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=94.20  E-value=0.18  Score=33.74  Aligned_cols=44  Identities=14%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             ccCCHHHHHHHHHHHHHhC-CCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           68 LRWTPDLHLRFVNAVEKLG-GQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        68 lrWT~ELH~rFV~AV~~LG-G~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      -.||++-...|+.+|.++| +    .+..|...|+  +-|..+|+.+...+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~----~w~~Ia~~~~--~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKN----NWEKIAKELP--GRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            4699999999999999999 4    3799999986  79999999876654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=93.93  E-value=0.2  Score=33.15  Aligned_cols=44  Identities=14%  Similarity=0.183  Sum_probs=37.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      .||++-+..|+.++..+|-   ..++.|.+.|+-  -|..+|+.|.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~--rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG--RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC--CCHHHHHHHHHHh
Confidence            4999999999999999992   348999999854  8999999887654

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00426 TEA TEA domain

Probab=93.82  E-value=0.064  Score=43.24  Aligned_cols=46  Identities=24%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCchh-HHH-----------------hhcCCCCCCHHHHHHhhhh
Q 017464           68 LRWTPDLHLRFVNAVEKLGGQERATPK-LVL-----------------QMMDIKGLSIAHVKSHLQM  116 (371)
Q Consensus        68 lrWT~ELH~rFV~AV~~LGG~ekAtPK-~IL-----------------elM~V~GLT~~~VkSHLQK  116 (371)
                      -+|.++|-..|++|+..+-  ...+-| ++.                 ..-| .-.|+.||.||+|.
T Consensus         4 ~vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv   67 (68)
T smart00426        4 GVWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV   67 (68)
T ss_pred             CcCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence            3799999999999999885  222222 222                 1111 23689999999995

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=81.01  E-value=2.1  Score=33.64  Aligned_cols=52  Identities=10%  Similarity=0.275  Sum_probs=36.8

Q ss_pred             cCCHHHHHHHHHHHHHh---CCC------CCCchhHHHhhcCC---CCCCHHHHHHhhhhhhhc
Q 017464           69 RWTPDLHLRFVNAVEKL---GGQ------ERATPKLVLQMMDI---KGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~L---GG~------ekAtPK~ILelM~V---~GLT~~~VkSHLQKYRl~  120 (371)
                      .||++..+.||+++-..   |..      .+.....|++.|+-   -.+|..||++|++..|..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            59999999999988443   332      22334557776665   347899999999877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		7e-07

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 64  KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118
           K PR+ WT +LH +F+ AV+ LG  ERA PK +L +M++  L+  +V SHLQ +R
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	3e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 85.4 bits (211), Expect = 3e-21
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 63  SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121
            K PR+ WT +LH +F+ AV+ LG  ERA PK +L +M++  L+  +V SHLQ +R   
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 8e-09
 Identities = 48/386 (12%), Positives = 106/386 (27%), Gaps = 100/386 (25%)

Query: 48  VEENDKKPPVRPYV--RSKM--------PRLRWTPDLHLRFVNAVEKLGGQERATPKLVL 97
            E+       R Y+  R ++                 +L+   A+ +L    R    +++
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNVLI 155

Query: 98  QMMDIKGLSIAHVKSHL--QMYRSKKIDDPGRAMADHRHLVESGDRNIYNLSQLPMLQ-- 153
             +   G      K+ +   +  S K+      M      +   + N    + L MLQ  
Sbjct: 156 DGV--LGSG----KTWVALDVCLSYKVQ---CKMDFKIFWLNLKNCNSPE-TVLEMLQKL 205

Query: 154 -------GYNNQSQASGFRYGEASWSTAREYLMRNPYVSRSLI--DE------------- 191
                    +    +S  +    S       L+++      L+                 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 192 ------TRSRLYGTVAEKIFDGTNCNWPSNNNFRMSTTSSALSYGANSTW-KMPELKEE- 243
                 TR +    V + +   T  +   +++    T     S        +  +L  E 
Sbjct: 266 CKILLTTRFK---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 244 ----------IQTSFNRNRDPWQAQSRLRPIDLNPVRQ-QHTKIEEQKSATMKRKATDCG 292
                     I  S       W      + ++ + +     + +   + A  ++      
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 293 ------KLDLELSLRLRPSSNEEESRPP----RQGSLEEKINKVDGELSLSLYS------ 336
                  +   L   +     + +         + SL EK  K   E ++S+ S      
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK---ESTISIPSIYLELK 436

Query: 337 --PSSSSSKHRRLMKEGEDHSNKERA 360
               +  + HR ++    DH N  + 
Sbjct: 437 VKLENEYALHRSIV----DHYNIPKT 458

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.14
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	96.88
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	96.49
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	96.44
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.14
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	96.06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	95.87
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	95.83
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	95.44
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	95.17
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	95.06
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	94.79
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	94.67
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	94.63
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	94.05
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	93.7
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	93.6
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	93.55
2cjj_A	93	Radialis; plant development, DNA-binding protein,	92.67
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	92.39
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	91.98
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	91.54
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	91.39
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	91.18
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	90.35
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	90.12
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	90.06
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	89.95
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	88.76
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	88.8
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	88.29
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	87.8
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	87.78
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	86.57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	86.29
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	85.2
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	85.14
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	84.7
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	84.01
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	83.01

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=3.1e-28  Score=188.00  Aligned_cols=59  Identities=44%  Similarity=0.750  Sum_probs=56.4

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI  122 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~  122 (371)
                      .+|+|++||+|||++||+||++|| .++|+||.||++|+|+|||++||+|||||||++..
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999 79999999999999999999999999999998754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.14  E-value=0.00091  Score=50.79  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             CCccCCHHHHHHHHHHHHHhCCCCC---CchhHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017464           66 PRLRWTPDLHLRFVNAVEKLGGQER---ATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID  123 (371)
Q Consensus        66 pRlrWT~ELH~rFV~AV~~LGG~ek---AtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~  123 (371)
                      .+-.||+|-+..|++||..+| .+.   -.+..|.+.|  +|-|..||+.|.|+|-.....
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHHh
Confidence            455899999999999999999 222   3588999987  579999999999999876543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.05  E-value=0.0013  Score=51.63  Aligned_cols=49  Identities=14%  Similarity=0.103  Sum_probs=42.6

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      ..+-.||+|.+.+|++||+.+|+    .++.|.++|+  +-|..||+.|-++|-.
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLPI   64 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence            35678999999999999999994    3899999986  6999999999988843

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.88  E-value=0.002  Score=48.80  Aligned_cols=53  Identities=19%  Similarity=0.295  Sum_probs=45.5

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID  123 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~  123 (371)
                      ..+-.||+|.+..|++||..+|-    .+..|..+|  +|-|..+|+.|.++|..+...
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~   59 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKVK   59 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHh
Confidence            34568999999999999999993    599999976  689999999999999776543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=96.49  E-value=0.0066  Score=44.59  Aligned_cols=49  Identities=20%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             CCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        66 pRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      .+-.||+|...++++||..+| .  ..++.|.+.|  +|.|..+++.|-++|-.
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            455799999999999999999 1  2389999998  67999999999888855

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.44  E-value=0.0087  Score=46.42  Aligned_cols=59  Identities=15%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             CCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccCCCCC
Q 017464           66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGR  127 (371)
Q Consensus        66 pRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~~~~q  127 (371)
                      ..-.||.|-+..|+.||..+++-..-.+.+|.+.|   |-|..+|+.|.+++......+++.
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~~~~~G~   65 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVTCSPGM   65 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhcCccCCC
Confidence            34479999999999999999843345688899998   589999999999887654434444

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.14  E-value=0.0086  Score=56.24  Aligned_cols=53  Identities=25%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI  122 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~  122 (371)
                      .+..-+||+|.+..|++|+..+| -+   +..|.++|  ++-|..+|+.|.++|+.+..
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KD---W~~IAk~V--gTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RD---FQAISDVI--GNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SC---HHHHHHHH--SSCCHHHHHHHHHHTTTTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cC---HHHHHHHc--CCCCHHHHHHHHHHHHHHhh
Confidence            35778999999999999999999 33   99999985  56999999999999997643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=96.06  E-value=0.013  Score=42.91  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=40.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      -.||++...++++||+++|-   ..++.|.+.|+. |.|..|++.|-++|.+
T Consensus        10 ~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A           10 ENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            35999999999999999991   238999999862 6999999999988864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=95.87  E-value=0.022  Score=42.67  Aligned_cols=54  Identities=13%  Similarity=0.163  Sum_probs=45.1

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      .++++-.||+|.-...+++|+++|.   -.+..|.+.|+..|.|-.+++-+-..|-.
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            3567889999999999999999992   14899999997668999999987766644

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=95.83  E-value=0.013  Score=59.51  Aligned_cols=53  Identities=25%  Similarity=0.370  Sum_probs=46.6

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI  122 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~  122 (371)
                      .+...+||++-|..|++||.++|- +   ++.|-++++.  -|..||++|.++||....
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk-d---w~~IA~~VgT--KT~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDVIGN--KSVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT-C---HHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence            346789999999999999999983 3   9999999887  799999999999997643

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=95.44  E-value=0.024  Score=44.07  Aligned_cols=53  Identities=9%  Similarity=0.062  Sum_probs=41.4

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      ..+-.||++-...|+.||..+|.-..-.+..|.++|  ||-|..+|+.|-+.+..
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            345569999999999999999821123466787776  58999999999887754

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=95.17  E-value=0.053  Score=39.33  Aligned_cols=51  Identities=12%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      ...+-.||+|...+++++|.++|-   -.+..|.+.|  +|.|..+++-|-++|-.
T Consensus         5 ~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            5 SSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHHcC
Confidence            345678999999999999999992   2389999997  68999999988777643

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=95.06  E-value=0.049  Score=38.37  Aligned_cols=46  Identities=17%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      +-.||+|....++++|.++|.   ..++.|.+.|  +|-|..+++-|-++|
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            467999999999999999993   2489999987  589999999887766

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=94.79  E-value=0.066  Score=37.81  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=39.8

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      +-.||+|....++++|.++|.   ..+..|...|  +|-|..+++-|-+.|-
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence            457999999999999999993   2488999887  6899999998877663

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=94.67  E-value=0.087  Score=37.50  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=40.0

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      |-.||+|.....+++|+.+|.   ..++.|.+.|+..|-|-.+++-+-..|
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~   49 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM   49 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            457999999999999999992   148999999876689999999765554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=94.63  E-value=0.078  Score=39.84  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ  115 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ  115 (371)
                      ..|-.||+|.-...+++|+++|.-   .++.|.+.+...|.|-.|++-.-.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~   56 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWR   56 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHH
Confidence            345679999999999999999921   389999999888999999985543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.05  E-value=0.12  Score=38.20  Aligned_cols=51  Identities=12%  Similarity=0.255  Sum_probs=42.8

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~  120 (371)
                      +...+-.||+|-..+++++|..+|.    .+..|.++|   |.|-.+|+-|-+.|-..
T Consensus         5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~   55 (66)
T 2din_A            5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDK   55 (66)
T ss_dssp             SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhCh
Confidence            3455668999999999999999993    589999955   59999999999888654

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=93.70  E-value=0.053  Score=43.79  Aligned_cols=58  Identities=24%  Similarity=0.359  Sum_probs=40.1

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHh------------------hcCCCCCCHHHHHHhhhhhhhcccCC
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQ------------------MMDIKGLSIAHVKSHLQMYRSKKIDD  124 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILe------------------lM~V~GLT~~~VkSHLQKYRl~k~~~  124 (371)
                      ++..-+|.++|-+.|++|+..+- +. .+-|-||.                  .-| .--|+.||.||||.-+..+..+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~~   78 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSRD   78 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTTC
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhhh
Confidence            34567899999999999999885 11 11222221                  111 4579999999999988766544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.60  E-value=0.17  Score=37.84  Aligned_cols=49  Identities=14%  Similarity=0.062  Sum_probs=41.5

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      ..+-.||+|-..+++++|.++|-   ..++.|...|+  |.|..+++-|-..|-
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWL   55 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHc
Confidence            45668999999999999999992   24899999986  899999998877764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.55  E-value=0.22  Score=36.75  Aligned_cols=44  Identities=11%  Similarity=0.033  Sum_probs=36.8

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHh
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSH  113 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSH  113 (371)
                      ++..-.||++-|..|++|+.++|-    ....|..+|  |+-|..+|.-|
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~   52 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLY   52 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHH
Confidence            456678999999999999999983    378998764  67999999865

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=92.67  E-value=0.18  Score=40.85  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~  120 (371)
                      .-.||+|-...|+.||..+|--..-.+..|...|  ||-|..+|+.|-+.+...
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            4469999999999999999822124578898887  589999999999887643

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=92.39  E-value=0.37  Score=39.94  Aligned_cols=54  Identities=19%  Similarity=0.065  Sum_probs=43.2

Q ss_pred             cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC--CCCCCHHHHHHhhhhhh
Q 017464           62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD--IKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~--V~GLT~~~VkSHLQKYR  118 (371)
                      ..++.|..||+|.-...+++|+++|.-   .++.|+..+.  .+|.|..++|-+...+-
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll   63 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV   63 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            457789999999999999999999931   3899999763  38999999996544433

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=91.98  E-value=0.36  Score=38.05  Aligned_cols=47  Identities=17%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      -.+-.||+|-...+++||.++|.    .+..|.+.|  ||-|..+|+.|-..+
T Consensus        54 ~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~  100 (105)
T 1gv2_A           54 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST  100 (105)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            34568999999999999999994    388998875  799999999987654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.54  E-value=0.76  Score=34.23  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHh
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSH  113 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSH  113 (371)
                      ...+-.||+|-|..|.+|+.++| -+   ...|...| |+.-|..+|..+
T Consensus         6 ~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f   50 (63)
T 2yqk_A            6 SGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF   50 (63)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence            45567899999999999999999 33   67787632 456899988744

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=91.39  E-value=0.52  Score=36.63  Aligned_cols=51  Identities=16%  Similarity=0.134  Sum_probs=40.6

Q ss_pred             cccccCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464           58 RPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ  115 (371)
Q Consensus        58 r~y~r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ  115 (371)
                      .-|..+.-.+-.||+|.-...+++|.++| ..   +..|.+.|   |.|-.+|+.+..
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~k---W~~IA~~l---gRt~~q~knRw~   64 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHG-ND---WATIGAAL---GRSASSVKDRCR   64 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHS-SC---HHHHHHHH---TSCHHHHHHHHH
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHC-CC---HHHHHHHh---CCCHHHHHHHHH
Confidence            33445667788999999999999999999 22   99999999   899999998754

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=91.18  E-value=0.39  Score=37.85  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=39.4

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      +-.||+|....++.+|+.+|..   .++.|.+.|  +|.|..+++.|-+.|
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH   49 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence            4579999999999999999942   388999987  689999999887766

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=90.35  E-value=0.5  Score=37.74  Aligned_cols=50  Identities=12%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~  120 (371)
                      -.+-.||+|-...++.+|..+|.    .+..|...|  ||-|..+|+.|-..+..+
T Consensus        51 i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           51 LRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence            34568999999999999999993    489999987  789999999987766543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=90.12  E-value=0.6  Score=38.35  Aligned_cols=50  Identities=14%  Similarity=0.233  Sum_probs=42.5

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      ....+..||+|.-.+++++|+++|.    .++.|.+.|  +|.|..+++.+-..|-
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL   56 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence            4567788999999999999999994    599999887  5799999998777664

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=90.06  E-value=0.68  Score=37.89  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=41.8

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      ....+-.||+|.-.+++++|+.+|..   .++.|.+.|  +|-|..+++-+-..|-
T Consensus        23 p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           23 PELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHNHL   73 (128)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHHhc
Confidence            34456789999999999999999932   389999987  5899999998777654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=89.95  E-value=0.71  Score=37.76  Aligned_cols=47  Identities=19%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      -.+-.||+|....++++|.++|.    .+..|.+.|  ||-|..+|+.|-..+
T Consensus        77 ~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~~~  123 (128)
T 1h8a_C           77 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWNST  123 (128)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHHHH
Confidence            34567999999999999999993    389999876  799999999886654

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=88.76  E-value=0.074  Score=42.11  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=42.7

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcc
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK  121 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k  121 (371)
                      -.+-.||+|....|+++|..+|-    .+..|...|  +|-|..+|+.|.+.|..+.
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            34567999999999999999993    389998885  6899999999988776544

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=88.80  E-value=0.81  Score=36.50  Aligned_cols=45  Identities=16%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      ..||+|.-.+++.+|+.+|..   .+..|.+.|+  |.|..+++-+-..|
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~--~Rt~~qcr~Rw~~~   46 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMI--TRNPRQCRERWNNY   46 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcC--CCCHHHHHHHHHHH
Confidence            479999999999999999942   4899999885  79999998766554

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=88.29  E-value=0.99  Score=37.22  Aligned_cols=52  Identities=21%  Similarity=0.352  Sum_probs=43.0

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI  122 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~  122 (371)
                      ..+-.||+|-...++++|..+|..    +..|.+.|  +|.|..+|+.|-..|.....
T Consensus        52 ~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l--~gRt~~~~k~rw~~~l~~~~  103 (131)
T 3zqc_A           52 VVKHAWTPEEDETIFRNYLKLGSK----WSVIAKLI--PGRTDNAIKNRWNSSISKRI  103 (131)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHSCSC----HHHHTTTS--TTCCHHHHHHHHHHTTGGGC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHc--CCCCHHHHHHHHHHHHHHHh
Confidence            344579999999999999999953    89999875  68999999998877765544

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=87.80  E-value=1.1  Score=37.91  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=41.3

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      ....+..||+|-...++++|.++|.    .+..|.+.|  ||-|..+|+.|-..+-
T Consensus       106 p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~~~~  155 (159)
T 1h89_C          106 PEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTM  155 (159)
T ss_dssp             TTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHTTT
T ss_pred             ccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence            3345678999999999999999993    489999875  8999999999876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=87.78  E-value=1  Score=37.04  Aligned_cols=49  Identities=16%  Similarity=0.334  Sum_probs=41.0

Q ss_pred             CCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464           66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        66 pRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~  120 (371)
                      .+-.||+|-...++++|.++|.    .+..|.+.|  +|.|..+|+.|-..+..+
T Consensus        61 ~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           61 SHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence            4457999999999999999994    389999865  799999999987666544

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=86.57  E-value=0.37  Score=38.38  Aligned_cols=46  Identities=24%  Similarity=0.241  Sum_probs=35.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464           68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ  115 (371)
Q Consensus        68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ  115 (371)
                      -.||.+-...|..|+..++.-..-.+.+|.+.+  ||-|.++|+.|-|
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V--pGKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV--KGRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS--CSSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc--CCCCHHHHHHHHH
Confidence            359999999999999999733334456677665  5899999999966

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=86.29  E-value=1.6  Score=36.87  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=41.4

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      ...+-.||+|....++.+|..+|.   -.+..|.+.|  +|.|..+++.+-..|-
T Consensus        55 ~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           55 ELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL  104 (159)
T ss_dssp             TCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHTT
T ss_pred             CcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHHh
Confidence            445678999999999999999993   2378999887  6899999998876663

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=85.20  E-value=1.6  Score=37.13  Aligned_cols=54  Identities=17%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC--CCCCCHHHHHHhhhhhh
Q 017464           62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD--IKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~--V~GLT~~~VkSHLQKYR  118 (371)
                      ..+++|-.||+|.-...+++|+++|.   -.++.|+..+.  .+|.|-.++|-+...+-
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll   67 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV   67 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999993   13899999875  38999999996654443

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=85.14  E-value=2.7  Score=35.74  Aligned_cols=52  Identities=19%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhc--CCCCCCHHHHHHhhhh
Q 017464           62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMM--DIKGLSIAHVKSHLQM  116 (371)
Q Consensus        62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM--~V~GLT~~~VkSHLQK  116 (371)
                      ..++.|-.||+|.-...+++|+++|.   -.++.|+..+  ..+|.|..++|-+...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrn   79 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKT   79 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHH
Confidence            34678899999999999999999993   1389999875  3489999999954333

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=84.70  E-value=1.3  Score=36.45  Aligned_cols=46  Identities=11%  Similarity=-0.067  Sum_probs=38.7

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      ..||+|.-.+.+++|..+|..   .++.|.+.|  +|-|..++.-+-+.|-
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQ---NWPRITSFL--PNRSPKQCRERWFNHL   48 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC---CGGGGTTSC--TTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCcC---CHHHHHHHH--CCCCHHHHHHHHhhcc
Confidence            469999999999999999932   388998887  6899999998777664

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=84.01  E-value=2.1  Score=33.90  Aligned_cols=47  Identities=17%  Similarity=0.065  Sum_probs=38.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC--CCCCCHHHHHHhhhhhh
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD--IKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~--V~GLT~~~VkSHLQKYR  118 (371)
                      .||+|.....+++|+++|.   -.++.|++...  ++|.|..+||-+-..+-
T Consensus         2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnll   50 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence            4999999999999999993   13899998643  58999999997655443

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=83.01  E-value=2.5  Score=33.11  Aligned_cols=50  Identities=10%  Similarity=0.009  Sum_probs=38.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK  120 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~  120 (371)
                      .||.+-..+|..|+..++-..--.+.+|.+.+  +|-|.++|..|-+.....
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHHHSSSS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHHHHHhc
Confidence            59999999999999999722223466777765  579999999887666433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	3e-18

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.7 bits (186), Expect = 3e-18
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 63  SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121
            K PR+ WT +LH +F+ AV+ LG  ERA PK +L +M++  L+  +V SHLQ +R   
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.16
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	96.67
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	95.68
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.56
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	95.38
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	95.13
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	93.96
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	93.72
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	91.88
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	91.16
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	90.98
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	90.45
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	90.11

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=4.3e-26  Score=173.87  Aligned_cols=59  Identities=44%  Similarity=0.740  Sum_probs=56.0

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI  122 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~  122 (371)
                      .||+|++||+|||++||+||++||+ +.|+||.|+++|+|+|||+.||+|||||||++..
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999985 8999999999999999999999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00038  Score=49.89  Aligned_cols=51  Identities=20%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID  123 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~  123 (371)
                      .++||+|.+..|++||..+|.    .+..|.++|+  +-|..+|++|.++|......
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcC--CCCHHHHHHHHHHHHHHHHh
Confidence            468999999999999999993    3899999875  79999999999998765443

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0016  Score=44.87  Aligned_cols=45  Identities=20%  Similarity=0.236  Sum_probs=39.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR  118 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR  118 (371)
                      .||++.+.+|++||.++| .  .-++.|.+.|+  +-|..|++.|-++|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHhC
Confidence            499999999999999998 2  23899999986  689999999999884

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.013  Score=41.88  Aligned_cols=49  Identities=27%  Similarity=0.443  Sum_probs=42.4

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464           65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS  119 (371)
Q Consensus        65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl  119 (371)
                      +..-+||++-...|++||..+| .+   +..|.++|  +|-|..+|+.|-.+|+.
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G-~~---w~~Ia~~~--~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYG-RD---FQAISDVI--GNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SC---HHHHHHHH--SSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-ch---HHHHHHHc--CCCCHHHHHHHHHHHHh
Confidence            4556799999999999999999 33   89999987  57999999999988864

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.013  Score=40.34  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      |..||++-..+.+++|+++|..   .++.|.+.|  +|-|..|++.|-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHH--CCCCHHHHHHHHHhh
Confidence            4579999999999999999932   389999988  589999999887766

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.01  Score=42.91  Aligned_cols=47  Identities=9%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464           63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ  115 (371)
Q Consensus        63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ  115 (371)
                      .++..-.||+|.+..|++||.++|. +   +..|.++|  +|-|..+|+.|-.
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~-~---w~~Ia~~~--~~rt~~q~~~~yy   59 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK-N---FGLIASFL--ERKTVAECVLYYY   59 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS-C---SSSHHHHT--TTSCHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC-c---HHHHHHHc--CCCCHHHHHHHHH
Confidence            3455667999999999999999993 3   78898875  6899999999964

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=95.13  E-value=0.017  Score=41.26  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhh
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQM  116 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQK  116 (371)
                      .||+|-+..|++||..+|.-....+..|.+.|+  |-|..+|+.|-++
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--gRt~~qc~~r~~~   48 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEI   48 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC--CCCHHHHHHHHHH
Confidence            499999999999999999434456899999885  7999999998754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.042  Score=38.66  Aligned_cols=50  Identities=8%  Similarity=0.064  Sum_probs=39.0

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464           64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ  115 (371)
Q Consensus        64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ  115 (371)
                      +..+-.||+|-...|++||..+|....-.+..|.+.|  +|-|..+|..|-+
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l--~~Rt~~qc~~R~~   58 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYK   58 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc--CCCCHHHHHHHHH
Confidence            3455579999999999999999832222478898876  5899999987754

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.075  Score=37.01  Aligned_cols=46  Identities=15%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             CccCCHHHHHHHHHHHHHhC-CCCCCchhHHHhhcCCCCCCHHHHHHhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLG-GQERATPKLVLQMMDIKGLSIAHVKSHLQM  116 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LG-G~ekAtPK~ILelM~V~GLT~~~VkSHLQK  116 (371)
                      |..||+|.-..++++|.++| |    .+..|.+.+..++.|..+++-.-..
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~----~W~~I~~~~~~~~Rt~~q~k~Rwrn   48 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEG----NWAAISKNYPFVNRTAVMIKDRWRT   48 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC----hHHHHHhhcCCCCcCHHHHHHHHHH
Confidence            45799999999999999999 3    3899999988889999999855433

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.2  Score=34.42  Aligned_cols=47  Identities=15%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQM  116 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQK  116 (371)
                      |-.||+|.-...+++|+++|--   .+..|.+.+...+.|..+++-.-..
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~Rw~n   48 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRT   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHHHHH
Confidence            4469999999999999999921   3899998877788999999865443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.16  E-value=0.22  Score=34.34  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      |-.||+|--.+-+++|.++|-   ..++.|.+.|  ++.|..|++.+-++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHH--CCCCHHHHHHHHHhh
Confidence            456999999999999999982   1389999988  589999999887766

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.28  Score=35.33  Aligned_cols=54  Identities=15%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccCCC
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDP  125 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~~~  125 (371)
                      .||.+-...|..|+..+.+--.-.+.+|.+.|   |-|.++|..+.++.+......+
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v---gkt~~ev~~~~k~l~e~~~~~~   56 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVTCSP   56 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCCCCS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH---CCCHHHHHHHHHHHHHhcccCC
Confidence            69999999999999999643345688899999   5899999999988887654443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.45  E-value=0.23  Score=34.84  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ  115 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ  115 (371)
                      .||+|-+..|++|+..+|- +   ...|.+.| ||+-|..+|..|--
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-d---f~~I~~~~-v~~Ks~~~~v~fYY   44 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-D---FNDIRQDF-LPWKSLTSIIEYYY   44 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-C---HHHHHHTT-CSSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-c---HHHHHHHH-cCCCCHHHHHHHHH
Confidence            5999999999999999993 3   67787643 35799999999863

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.11  E-value=0.28  Score=33.26  Aligned_cols=43  Identities=19%  Similarity=0.300  Sum_probs=36.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464           69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY  117 (371)
Q Consensus        69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY  117 (371)
                      -||+|.-..++++|.++|-    .+..|...|  ||-|-.+|+.|-..+
T Consensus         3 ~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhh----HHHHHHhHc--CCCCHHHHHHHHHHH
Confidence            5999999999999999993    389998875  799999999886544