Citrus Sinensis ID: 017470

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEASSPGWSA
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccccc
msnkkskypvlQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLagsiigpggLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQnsnnalhgqvtIGTLILQDCAVGLLFALLpvlggnsglLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILlhwfpsegtprseasspgwsa
msnkkskypvLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPsegtprseasspgwsa
MSNKKSKYPVLQVDLRLISDLvvvivsaaiggiiFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHvdillasvilviivKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYllllgttalslvttPLLFKLIPNVMNLGILLHWFPSEGTPRSEASSPGWSA
*******YPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFP****************
***********QVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLV**********QVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLG***********************
MSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSE**************
*****SKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEASSPGWS*
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEASSPGWSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
Q8VYR9568 K(+) efflux antiporter 5 yes no 0.981 0.640 0.75 1e-174
B5X0N6597 K(+) efflux antiporter 6 no no 0.967 0.601 0.683 1e-146
Q9ZUN3592 K(+) efflux antiporter 4 no no 0.967 0.606 0.678 1e-145
A8AQP0 601 Glutathione-regulated pot yes no 0.889 0.549 0.312 4e-29
B2VK47 601 Glutathione-regulated pot yes no 0.854 0.527 0.304 3e-28
B5BH03 601 Glutathione-regulated pot yes no 0.808 0.499 0.298 3e-27
Q5PL21 601 Glutathione-regulated pot yes no 0.808 0.499 0.298 3e-27
B5FJN1 601 Glutathione-regulated pot yes no 0.808 0.499 0.298 3e-27
B5R2A8 601 Glutathione-regulated pot yes no 0.808 0.499 0.298 3e-27
Q8Z1Y7 601 Glutathione-regulated pot N/A no 0.808 0.499 0.298 4e-27
>sp|Q8VYR9|KEA5_ARATH K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1 Back     alignment and function desciption
 Score =  610 bits (1574), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/416 (75%), Positives = 345/416 (82%), Gaps = 52/416 (12%)

Query: 1   MSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKF 60
           MSNKKSKYP+LQVDLRLISDLVV+IV AAIGGI+FSCLGQPVIVGYLLAGSIIGPGGLKF
Sbjct: 138 MSNKKSKYPILQVDLRLISDLVVIIVFAAIGGIVFSCLGQPVIVGYLLAGSIIGPGGLKF 197

Query: 61  ISELVQ----------------------------------------------------LC 68
           ISE+VQ                                                    LC
Sbjct: 198 ISEMVQVETVAQFGVVFLLFALGLEFSMTKLKVVGPVAVLGGLLQIVLLMFLCGVTALLC 257

Query: 69  GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPV 128
           GA+LSEG+FVG+FLSMSSTAVVVKFLVE+NS ++LHGQVTIG LI QDC VGLLFALLPV
Sbjct: 258 GARLSEGIFVGAFLSMSSTAVVVKFLVERNSTSSLHGQVTIGILIFQDCVVGLLFALLPV 317

Query: 129 LGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVA 188
           LGGNSGLLQG++SMGKLLL+LSIYLTV S+L+WSFVPRFLKLMIQLSSQTNELYQLAAVA
Sbjct: 318 LGGNSGLLQGIISMGKLLLILSIYLTVASLLTWSFVPRFLKLMIQLSSQTNELYQLAAVA 377

Query: 189 FCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIH 248
           FCLLSAWCSDKLGLSLELGSF+AGVM+STT+FA+HTL+QVEPIRNLFAALFLSSIGMLI+
Sbjct: 378 FCLLSAWCSDKLGLSLELGSFVAGVMLSTTEFAQHTLEQVEPIRNLFAALFLSSIGMLIN 437

Query: 249 VHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSR 308
           VHFLWNHVDILLASVILVI++KTA+  +V K F Y+MR SF VGV LAQIGEFAFVLLSR
Sbjct: 438 VHFLWNHVDILLASVILVIVIKTAIAAVVVKAFRYNMRISFHVGVLLAQIGEFAFVLLSR 497

Query: 309 ASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEA 364
           ASNLH++EGKMYLLLLGTTALSLVTTPLLFKLIP+ MNLG+LL WFPSE +  +E+
Sbjct: 498 ASNLHVIEGKMYLLLLGTTALSLVTTPLLFKLIPSAMNLGVLLRWFPSENSSPNES 553
May operate as a K(+)/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)
>sp|B5X0N6|KEA6_ARATH K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUN3|KEA4_ARATH K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2 Back     alignment and function description
>sp|A8AQP0|KEFB_CITK8 Glutathione-regulated potassium-efflux system protein KefB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B2VK47|KEFB_ERWT9 Glutathione-regulated potassium-efflux system protein KefB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B5BH03|KEFB_SALPK Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella paratyphi A (strain AKU_12601) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|Q5PL21|KEFB_SALPA Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B5FJN1|KEFB_SALDC Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella dublin (strain CT_02021853) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B5R2A8|KEFB_SALEP Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella enteritidis PT4 (strain P125109) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|Q8Z1Y7|KEFB_SALTI Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella typhi GN=kefB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
224120182 580 potassium efflux antiporter [Populus tri 0.989 0.632 0.773 1e-177
449460782 578 PREDICTED: K(+) efflux antiporter 5-like 0.978 0.628 0.773 1e-174
356561749 576 PREDICTED: K(+) efflux antiporter 5-like 0.986 0.635 0.784 1e-174
356529340 576 PREDICTED: K(+) efflux antiporter 5-like 0.986 0.635 0.784 1e-173
225455594 577 PREDICTED: K(+) efflux antiporter 5 [Vit 0.986 0.634 0.787 1e-172
186531286 565 K(+) efflux antiporter 5 [Arabidopsis th 0.986 0.647 0.749 1e-172
18423310 568 K(+) efflux antiporter 5 [Arabidopsis th 0.981 0.640 0.75 1e-172
255539661 565 Glutathione-regulated potassium-efflux s 0.978 0.642 0.790 1e-172
297795979 569 hypothetical protein ARALYDRAFT_495238 [ 0.981 0.639 0.747 1e-171
224136838 525 potassium efflux antiporter [Populus tri 0.967 0.683 0.783 1e-170
>gi|224120182|ref|XP_002318266.1| potassium efflux antiporter [Populus trichocarpa] gi|222858939|gb|EEE96486.1| potassium efflux antiporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 328/424 (77%), Positives = 347/424 (81%), Gaps = 57/424 (13%)

Query: 1   MSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKF 60
           MSNKKSKYP+LQVDLRLISDLVV IVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGL F
Sbjct: 142 MSNKKSKYPILQVDLRLISDLVVAIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLNF 201

Query: 61  ISELVQ----------------------------------------------------LC 68
           ISE+VQ                                                    +C
Sbjct: 202 ISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGPVAVLGGMLQIVIFMCLCGIVAAMC 261

Query: 69  GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPV 128
           GAKLSEGVFVGSFLSMSSTAVVVKFL+E+NS+N+LHGQVTIGTLI QDCA+GLLFALLPV
Sbjct: 262 GAKLSEGVFVGSFLSMSSTAVVVKFLIERNSSNSLHGQVTIGTLIFQDCAIGLLFALLPV 321

Query: 129 LGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVA 188
           LGGNSG LQGM+SMGKLLLVLS+YLT  S +SWSFVPRFLKLMIQLSSQTNELYQLAAVA
Sbjct: 322 LGGNSGALQGMISMGKLLLVLSVYLTAASFMSWSFVPRFLKLMIQLSSQTNELYQLAAVA 381

Query: 189 FCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIH 248
           FCLLSAWCSDKLGLSLELGSF+AG+MISTTDFA+HTL+QVEPIRNLFAALFLSSIGMLIH
Sbjct: 382 FCLLSAWCSDKLGLSLELGSFVAGIMISTTDFAQHTLEQVEPIRNLFAALFLSSIGMLIH 441

Query: 249 VHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSR 308
           VHFLWNHVDILLASVILVI VKT +   VTK FGYS+RTSF VGV LAQIGEFAFVLLSR
Sbjct: 442 VHFLWNHVDILLASVILVIAVKTTIAAAVTKAFGYSIRTSFHVGVLLAQIGEFAFVLLSR 501

Query: 309 ASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSE-GTPR----SE 363
           ASNLHL+EGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILL WFPSE  TP     SE
Sbjct: 502 ASNLHLIEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLQWFPSESSTPNKWFPSE 561

Query: 364 ASSP 367
             +P
Sbjct: 562 NGTP 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449460782|ref|XP_004148124.1| PREDICTED: K(+) efflux antiporter 5-like [Cucumis sativus] gi|449499664|ref|XP_004160879.1| PREDICTED: K(+) efflux antiporter 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356561749|ref|XP_003549141.1| PREDICTED: K(+) efflux antiporter 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356529340|ref|XP_003533253.1| PREDICTED: K(+) efflux antiporter 5-like [Glycine max] Back     alignment and taxonomy information
>gi|225455594|ref|XP_002269354.1| PREDICTED: K(+) efflux antiporter 5 [Vitis vinifera] gi|296084106|emb|CBI24494.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|186531286|ref|NP_001119415.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] gi|332008735|gb|AED96118.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18423310|ref|NP_568763.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] gi|75304451|sp|Q8VYR9.1|KEA5_ARATH RecName: Full=K(+) efflux antiporter 5; Short=AtKEA5 gi|17979127|gb|AAL49821.1| putative potassium/proton antiporter protein [Arabidopsis thaliana] gi|21537045|gb|AAM61386.1| potassium/proton antiporter-like protein [Arabidopsis thaliana] gi|332008734|gb|AED96117.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255539661|ref|XP_002510895.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] gi|223550010|gb|EEF51497.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297795979|ref|XP_002865874.1| hypothetical protein ARALYDRAFT_495238 [Arabidopsis lyrata subsp. lyrata] gi|297311709|gb|EFH42133.1| hypothetical protein ARALYDRAFT_495238 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224136838|ref|XP_002322428.1| potassium efflux antiporter [Populus trichocarpa] gi|222869424|gb|EEF06555.1| potassium efflux antiporter [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
TAIR|locus:2165326568 KEA5 "K+ efflux antiporter 5" 0.803 0.524 0.755 7.1e-141
TAIR|locus:2050382592 KEA4 "K+ efflux antiporter 4" 0.789 0.494 0.687 9.2e-124
TAIR|locus:2181910597 KEA6 "K+ efflux antiporter 6" 0.795 0.494 0.677 2.4e-123
TIGR_CMR|DET_1627 567 DET_1627 "sodium/hydrogen exch 0.695 0.455 0.330 3.5e-32
UNIPROTKB|P45522 601 kefB [Escherichia coli K-12 (t 0.765 0.472 0.302 1.3e-30
UNIPROTKB|A5D7N7677 TMCO3 "Uncharacterized protein 0.716 0.392 0.284 1.9e-29
TIGR_CMR|CPS_1593 655 CPS_1593 "putative glutathione 0.646 0.366 0.306 3.4e-29
UNIPROTKB|F1RN34678 TMCO3 "Uncharacterized protein 0.719 0.393 0.289 6.2e-29
MGI|MGI:2444946678 Tmco3 "transmembrane and coile 0.716 0.392 0.262 7.7e-28
RGD|1306586678 Tmco3 "transmembrane and coile 0.716 0.392 0.265 4.4e-27
TAIR|locus:2165326 KEA5 "K+ efflux antiporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1148 (409.2 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
 Identities = 225/298 (75%), Positives = 252/298 (84%)

Query:    67 LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALL 126
             LCGA+LSEG+FVG+FLSMSSTAVVVKFLVE+NS ++LHGQVTIG LI QDC VGLLFALL
Sbjct:   256 LCGARLSEGIFVGAFLSMSSTAVVVKFLVERNSTSSLHGQVTIGILIFQDCVVGLLFALL 315

Query:   127 PVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAA 186
             PVLGGNSGLLQG++SMGKLLL+LSIYLTV S+L+WSFVPRFLKLMIQLSSQTNELYQLAA
Sbjct:   316 PVLGGNSGLLQGIISMGKLLLILSIYLTVASLLTWSFVPRFLKLMIQLSSQTNELYQLAA 375

Query:   187 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGML 246
             VAFCLLSAWCSDKLGLSLELGSF+AGVM+STT+FA+HTL+QVEPIRNLFAALFLSSIGML
Sbjct:   376 VAFCLLSAWCSDKLGLSLELGSFVAGVMLSTTEFAQHTLEQVEPIRNLFAALFLSSIGML 435

Query:   247 IHVHFLWNHXXXXXXXXXXXXXXKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLL 306
             I+VHFLWNH              KTA+  +V K F Y+MR SF VGV LAQIGEFAFVLL
Sbjct:   436 INVHFLWNHVDILLASVILVIVIKTAIAAVVVKAFRYNMRISFHVGVLLAQIGEFAFVLL 495

Query:   307 SRASNLHLVEGKMYXXXXXXXXXXXXXXPLLFKLIPNVMNLGILLHWFPSEGTPRSEA 364
             SRASNLH++EGKMY              PLLFKLIP+ MNLG+LL WFPSE +  +E+
Sbjct:   496 SRASNLHVIEGKMYLLLLGTTALSLVTTPLLFKLIPSAMNLGVLLRWFPSENSSPNES 553
GO:0006812 "cation transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=ISS
GO:0015079 "potassium ion transmembrane transporter activity" evidence=ISS
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2050382 KEA4 "K+ efflux antiporter 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181910 KEA6 "K+ efflux antiporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1627 DET_1627 "sodium/hydrogen exchanger family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P45522 kefB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N7 TMCO3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1593 CPS_1593 "putative glutathione-regulated potassium-efflux system protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN34 TMCO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2444946 Tmco3 "transmembrane and coiled-coil domains 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306586 Tmco3 "transmembrane and coiled-coil domains 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYR9KEA5_ARATHNo assigned EC number0.750.98110.6408yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XII0485
SubName- Full=Putative uncharacterized protein; (581 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00070436
cation proton exchanger (799 aa)
  •     0.444

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 1e-42
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 1e-40
PRK03659 601 PRK03659, PRK03659, glutathione-regulated potassiu 2e-34
COG4651408 COG4651, RosB, Kef-type K+ transport system, predi 5e-32
PRK10669 558 PRK10669, PRK10669, putative cation:proton antipor 5e-32
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 1e-24
PRK03562 621 PRK03562, PRK03562, glutathione-regulated potassiu 1e-24
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 6e-04
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information 
 Score =  151 bits (385), Expect = 1e-42
 Identities = 83/291 (28%), Positives = 147/291 (50%), Gaps = 7/291 (2%)

Query: 51  SIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIG 110
            ++ P  L  +  L+   G  L E +  G+ LS +S  VV+  L E+   N   G + +G
Sbjct: 85  GVLIPFLLGLLLALLGGLGIPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILG 144

Query: 111 TLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKL 170
             +L D    +L A+L  L G  GL     S   LLL++ + + +  +L        L+L
Sbjct: 145 ESVLNDAVAVVLLAVLLALAGVGGL-----SDLGLLLLIFLVVALGGLLLGLVFGWLLRL 199

Query: 171 MIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEP 230
           + + +S   EL  L  +A  LL+A  ++ LGLS  LG+F+AG+++S   FA    +++EP
Sbjct: 200 ITRFTSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEP 259

Query: 231 IRN-LFAALFLSSIGMLIHVH-FLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTS 288
               LF  LF  S+G+ + +   L + + ++L  ++ +++ K     ++ +L G S+R +
Sbjct: 260 FGYGLFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREA 319

Query: 289 FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFK 339
            +VG    Q G  +  L +    L L++ ++Y LL+    L+ +  PLL K
Sbjct: 320 LIVGFGGLQRGAVSLALAAIGLQLGLIDRELYTLLVAVVLLTTLLKPLLKK 370

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
PRK03562 621 glutathione-regulated potassium-efflux system prot 100.0
PRK10669 558 putative cation:proton antiport protein; Provision 100.0
PLN03159 832 cation/H(+) antiporter 15; Provisional 100.0
PRK03659 601 glutathione-regulated potassium-efflux system prot 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 100.0
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 100.0
PRK05326 562 potassium/proton antiporter; Reviewed 100.0
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.97
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 99.92
COG3263 574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.9
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 99.89
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.89
TIGR00840 559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.82
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.59
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.53
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 99.43
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 99.23
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 98.79
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 98.66
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 98.63
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 98.62
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 98.58
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 98.29
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 98.25
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 97.83
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 97.83
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 97.35
PRK03562 621 glutathione-regulated potassium-efflux system prot 97.01
COG0475 397 KefB Kef-type K+ transport systems, membrane compo 96.99
PRK10669 558 putative cation:proton antiport protein; Provision 96.93
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 96.77
PRK03659 601 glutathione-regulated potassium-efflux system prot 96.76
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 96.62
PF03601 305 Cons_hypoth698: Conserved hypothetical protein 698 96.54
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 96.27
COG2855 334 Predicted membrane protein [Function unknown] 96.24
PRK05326 562 potassium/proton antiporter; Reviewed 96.22
TIGR00698 335 conserved hypothetical integral membrane protein. 95.94
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 95.77
PLN03159 832 cation/H(+) antiporter 15; Provisional 95.64
TIGR00831 525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 95.27
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 94.72
PF03956191 DUF340: Membrane protein of unknown function (DUF3 93.62
TIGR00210 398 gltS sodium--glutamate symport carrier (gltS). 93.09
COG4651 408 RosB Kef-type K+ transport system, predicted NAD-b 93.08
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 92.88
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 92.85
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 92.84
PF00999 380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 92.68
COG0786 404 GltS Na+/glutamate symporter [Amino acid transport 92.01
PF03616 368 Glt_symporter: Sodium/glutamate symporter; InterPr 91.16
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 90.51
COG0679311 Predicted permeases [General function prediction o 88.47
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 88.27
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 86.59
PRK10711231 hypothetical protein; Provisional 86.58
PF03977 360 OAD_beta: Na+-transporting oxaloacetate decarboxyl 86.14
TIGR03136 399 malonate_biotin Na+-transporting malonate decarbox 85.34
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 85.04
COG0025 429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 83.79
PF04172215 LrgB: LrgB-like family ; InterPro: IPR007300 The t 82.9
TIGR00659226 conserved hypothetical protein TIGR00659. Members 82.23
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.3e-46  Score=384.59  Aligned_cols=332  Identities=25%  Similarity=0.392  Sum_probs=286.4

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhH------HH-------------------
Q 017470           12 QVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ-------------------   66 (371)
Q Consensus        12 ~~~~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~------~e-------------------   66 (371)
                      +++++++.++.+++.++.++++++||+|+|+++||+++|+++||+++|++++.      .|                   
T Consensus         1 ~~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l   80 (621)
T PRK03562          1 MMDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRL   80 (621)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence            35677999999999999999999999999999999999999999999987521      11                   


Q ss_pred             ---------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Q 017470           67 ---------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV  119 (371)
Q Consensus        67 ---------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~  119 (371)
                                                 ++|++|..++++|.+++.||+++++++++|++..+++.||.+++++++||+.+
T Consensus        81 ~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~  160 (621)
T PRK03562         81 WKLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAA  160 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence                                       56789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 017470          120 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK  199 (371)
Q Consensus       120 ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~  199 (371)
                      +++++++..+....... ..........+.+++++..++.++|+.++++++..+  .+.+|.+....+.++++.++++++
T Consensus       161 i~ll~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~--~~~~e~~~~~~l~lv~~~a~la~~  237 (621)
T PRK03562        161 IPLVAMIPLLAASGAST-TLGAFALSALKVAGALALVVLGGRYVTRPALRFVAR--SGLREVFTAVALFLVFGFGLLMEE  237 (621)
T ss_pred             HHHHHHHHHHccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHHHHH
Confidence            99888876554321110 111112222333333444566688889999998876  356888877788888999999999


Q ss_pred             hCchHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470          200 LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK  279 (371)
Q Consensus       200 ~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~  279 (371)
                      +|+|+.+|||++|+++++.++++++++++++++++|.|+||+++|+++|++.+.++++.++.+++..+++|+++++..++
T Consensus       238 ~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~  317 (621)
T PRK03562        238 VGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR  317 (621)
T ss_pred             hCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988776666666666788999999999999


Q ss_pred             HhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhhhhh
Q 017470          280 LFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMN  346 (371)
Q Consensus       280 ~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~~~~  346 (371)
                      ..|+++++++.+|+.|+|+||++++++.++.+.|.++++.++.+++++++|++++|++.++++|...
T Consensus       318 ~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~  384 (621)
T PRK03562        318 PLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQ  384 (621)
T ss_pred             HhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998877543

>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PRK10711 hypothetical protein; Provisional Back     alignment and domain information
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins Back     alignment and domain information
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [] Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 62/408 (15%), Positives = 111/408 (27%), Gaps = 129/408 (31%)

Query: 1   MSNKKSKY----PVLQ------VDLRLISDLV-VVIVSAAIGGIIFSCLGQPVIVGYLLA 49
               + +Y     V +       D + + D+   ++    I  II S     V     L 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRLF 68

Query: 50  GSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS---------- 99
            +++         E+VQ          FV   L ++   ++     EQ            
Sbjct: 69  WTLLSKQ-----EEMVQ---------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 100 -NNALHG--------QVTIGTLI--LQDCAVGLLFALLPVLGGNSGL-LQGMVSMGKLLL 147
             + L+          V+       L+      L  L P       + + G++  GK  +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQA----LLELRP----AKNVLIDGVLGSGKTWV 166

Query: 148 VLSIYLTVTSILSWSFVPRF------LKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLG 201
            L +       LS+    +       L  +   +S    L  L  + + +   W S    
Sbjct: 167 ALDV------CLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTS---- 215

Query: 202 LSLELGSFMAGVMISTTDFAKHTLDQVEP-IRNLFAALFLSSIGMLIHVHFLWNHVDILL 260
                    + +        K  +  ++  +R L                    + + LL
Sbjct: 216 ----RSDHSSNI--------KLRIHSIQAELRRLLK---------------SKPYENCLL 248

Query: 261 ASVIL--VIIVKTAVGTIVTKLFGYSMRTSFLV-----GV--SLAQIGEFAFVLLSRASN 311
              +L  V   K          F  S +   L+      V   L+        L   +  
Sbjct: 249 ---VLLNVQNAKAW------NAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 312 LHLVEGKMYLLL-LGTTALSL-----VTTPLLFKLIPNVMNLGILLHW 353
           L   E K  LL  L      L      T P    +I   +  G+   W
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATW 344

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.77
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 93.94
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 90.65
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 83.04
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.77  E-value=4e-19  Score=172.23  Aligned_cols=248  Identities=17%  Similarity=0.068  Sum_probs=175.7

Q ss_pred             CCchHHHHHHHHHHHhhcHHHHHHHHhhccccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 017470           69 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLL  147 (371)
Q Consensus        69 G~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~-~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~  147 (371)
                      +.+..++..-..+...||.+..+.++.+.+... +..++.+++.+++||+.+++++++..   +++.+   +..+.   .
T Consensus       116 ~~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfy---t~~~~---~~~l~---~  186 (388)
T 1zcd_A          116 NYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TNDLS---MASLG---V  186 (388)
T ss_dssp             CCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHS---CCCCC---HHHHH---H
T ss_pred             hcCChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH---cCCcc---HHHHH---H
Confidence            444445566667778899999999999988654 44558899999999999999888762   22211   22111   1


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc-----chhH
Q 017470          148 VLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-----DFAK  222 (371)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-----~~~~  222 (371)
                      . .+.++..         +..+|.     ..++......+  .+...+.+++.|+|+.+|+|++|+++|..     +..+
T Consensus       187 ~-~~~~~~~---------~~l~r~-----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~  249 (388)
T 1zcd_A          187 A-AVAIAVL---------AVLNLC-----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAK  249 (388)
T ss_dssp             H-HHHHHHH---------HHHHHT-----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHH
T ss_pred             H-HHHHHHH---------HHHHHh-----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHH
Confidence            1 1111111         111211     12222222222  22344566999999999999999999985     2457


Q ss_pred             HHHHhhhcHH-HHHhHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHH
Q 017470          223 HTLDQVEPIR-NLFAALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSF  289 (371)
Q Consensus       223 ~~~~~l~~i~-~~f~plF-F~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~  289 (371)
                      +++++++++. .++.|+| |+.+|.++|....... ........+..+++|+++++..++..          |.+++|..
T Consensus       250 ~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~  329 (388)
T 1zcd_A          250 RLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIM  329 (388)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHH
Confidence            8899999987 5889999 9999999998432111 11122344445899999966666655          89999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHHHHHhHHHHhhhh
Q 017470          290 LVGVSLAQIGEFAFVLLSRASNLHL--VEGKMYLLLLGTTALSLVTTPLLFKLIP  342 (371)
Q Consensus       290 ~~g~~l~~~g~~~li~a~~a~~~g~--i~~~~~~~lv~~vils~l~~p~~~~~~~  342 (371)
                      .+|..++.+++++++++++|++.+.  ..++.+..++.++++|++++|++.|+..
T Consensus       330 ~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          330 VVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             THHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998876  3566788888999999999999998764
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00