Citrus Sinensis ID: 017480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFKETYSCRSLPLGRN
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccEEEEcccccccHHHHHHHHccccccccEEEEEEccEEccccccccccccccccccEEEEEccccccccccccccccHHHHHHHccccccccccHHHHHHccccccccccccccccEEcccccccccHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccEEEcccccEEEcccEEEEEEEcccccccHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccccEEEccccccHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHHccccccHHHHHcccccEEEEEcccccccccccccccEEEEcccEEcccccEEEEEEccccHHHHHHHHHHHHcccccccccccHccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHccccccHcccccccccccccccc
Coil and Loop (DISEMBL)
mrsktqifikspsnslttltvGANQFETLNHLKRSLLSLDQSLSSLYFTLngkildestplfknpqiaplstlYLRQRvfggggdggatgaeSRDCYLNMyaekkpdkidpneqrlSKWCncalsneplrepcvidklgtIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKlsrvpgaeengdgirfqcpitglefngkYRFVAMRTCGhvlstkalkevksssclvcheEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKVKKvkngedcvgedvAVDSLRvsgakrgavenksgekALAKVDvngkvgnvngasgnpavkrfkaadmappnankQVYASIFTSskksdfketyscrslplgrn
Flexible Loop (DISEMBL)
mrsktqifikspsnslttLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRvpgaeengdgirfqcPITGLEFNGKYRFVAMRTCGHVLstkalkevkssSCLVCHEEFGEMDKILINGNEEEISVLRERmeeeklkvkekkvkkvkngedcvgedvavdslrvsgakrgavenksgekalakvdvngkvgnvngasgnpAVKRFKAADMAPPNANKQVYASIFtsskksdfketyscrslplgrn
Low Complexity Region (SEG)
MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRsllsldqslsslYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFggggdggatgaESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMeeeklkvkekkvkkvkNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKvdvngkvgnvngasgnPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFKETYSCRSLPLGRN
Disordered region (IsUnstruct)
***************LTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR********************YL*****************LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGN******************************************************************************************************************************
Disordered Region (DISOPRED)
****TQI*IKSPSNSLTTLTVGANQFETLNHLKR**********SLYFTLNGKILDESTPLF***QIAPLSTLYLRQRVFGGGGDGGATGAESRD********************LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS**************DLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLR***********************************************************************************************************YSCRSLPLG**
Disordered Region (DISEMBL)
MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFKETYSCRSLPLGRN
Disordered Region (DISPRO)
*RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKV***************************************************************************************************C********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFKETYSCRSLPLGRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q9BY42	306	Protein RTF2 homolog OS=H	yes	no	0.654	0.794	0.354	3e-31
Q5R9P9	306	Protein RTF2 homolog OS=P	yes	no	0.654	0.794	0.354	6e-31
Q4R594	306	Protein RTF2 homolog OS=M	N/A	no	0.654	0.794	0.354	1e-30
Q3T1J8	306	Protein RTF2 homolog OS=R	yes	no	0.654	0.794	0.361	2e-30
Q0VCR1	299	Protein RTF2 homolog OS=B	yes	no	0.654	0.812	0.340	3e-30
A5GFW7	306	Protein RTF2 homolog OS=S	yes	no	0.668	0.810	0.334	5e-30
Q99K95	307	Protein RTF2 homolog OS=M	yes	no	0.431	0.521	0.388	5e-29
Q5ZJN1	306	Protein RTF2 homolog OS=G	yes	no	0.633	0.767	0.336	1e-27
Q54IS6	273	Protein RTF2 homolog OS=D	yes	no	0.466	0.633	0.316	2e-21
Q10154	240	Replication termination f	yes	no	0.487	0.754	0.292	1e-17

>sp|Q9BY42|RTF2_HUMAN Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=1 SV=3

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 146/271 (53%), Gaps = 28/271 (10%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+IK +K++  +KLS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV 268
            CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RMEE +L+ K +K 
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIMLNGTKEDVDVLKTRMEERRLRAKLEKK 198

Query: 269 KKVKNGEDCVGE-DVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVN----GASG 323
            K     + V + DV+ ++   S  K G  E  S +    K ++  K   +N    G +G
Sbjct: 199 TKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAMNESSSGKAG 258

Query: 324 NP---AVKRFKAADMAPPNANKQVYASIFTS 351
            P   A KR  A      +   + Y S+FT+
Sbjct: 259 KPPCGATKRSIA-----DSEESEAYKSLFTT 284

Homo sapiens (taxid: 9606)

>sp|Q5R9P9|RTF2_PONAB Protein RTF2 homolog OS=Pongo abelii GN=RTFDC1 PE=2 SV=1

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 28/271 (10%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+IK +K++  +KLS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV 268
            CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RMEE +L+ K +K 
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRMEERRLRAKLEKK 198

Query: 269 KKVKNGEDCVGE-DVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVN----GASG 323
            K     + V + DV+ ++   S  K G  E  S +    K ++  K    N    G +G
Sbjct: 199 TKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTATNESSSGKAG 258

Query: 324 NP---AVKRFKAADMAPPNANKQVYASIFTS 351
            P   A KR  A      +   + Y S+FT+
Sbjct: 259 KPPCGATKRSIA-----DSEESEAYKSLFTT 284

Pongo abelii (taxid: 9601)

>sp|Q4R594|RTF2_MACFA Protein RTF2 homolog OS=Macaca fascicularis GN=RTFDC1 PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 144/271 (53%), Gaps = 28/271 (10%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+IK +K++  +KLS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV 268
            CG V S +ALKE+K+  C  C   F E D I++NG  E++ VL+ RMEE +L+ K +K 
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARMEERRLRAKLEKK 198

Query: 269 KKVKNGEDCVGE-DVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVN----GASG 323
            K     + V + DV+ ++   S  K G  E  S +    K ++  K    N    G +G
Sbjct: 199 TKKPKAAESVSKPDVSEEAPGPSKVKTGKPEETSLDSREKKNNLAPKSAATNESFSGKAG 258

Query: 324 NP---AVKRFKAADMAPPNANKQVYASIFTS 351
            P   A KR  A      +   + Y S+FT+
Sbjct: 259 KPLCGATKRSIA-----DSEESEAYKSLFTT 284

Macaca fascicularis (taxid: 9541)

>sp|Q3T1J8|RTF2_RAT Protein RTF2 homolog OS=Rattus norvegicus GN=Rtfdc1 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/271 (36%), Positives = 144/271 (53%), Gaps = 28/271 (10%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+I+ +K++  +KLS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  TSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKV-KEKK 267
            CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L+ RMEE +L+   EKK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRMEERRLRAKLEKK 198

Query: 268 VKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDV----NGKVGNVNGASG 323
            KK K  E      ++ DS   S AK G  E    +    K  +        G+ +G  G
Sbjct: 199 TKKPKTAESASKLGISQDSAGPSKAKAGKSEEADPDPREKKSSLAPRGTASNGSASGKVG 258

Query: 324 NP---AVKRFKAADMAPPNANKQVYASIFTS 351
            P   A+KR  A      +   + Y SIFTS
Sbjct: 259 KPPCGALKRSIA-----DSEESETYKSIFTS 284

Rattus norvegicus (taxid: 10116)

>sp|Q0VCR1|RTF2_BOVIN Protein RTF2 homolog OS=Bos taurus GN=RTFDC1 PE=2 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 141/264 (53%), Gaps = 21/264 (7%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+IK +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV 268
            CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ R+EE +L+ K  K 
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRIEERRLRAKLGKK 198

Query: 269 KKVKNGEDCVGE-DVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAV 327
            K     + V + +V+ ++   S  K G  E  S +    K +   K    +G +   A 
Sbjct: 199 TKKPKVAESVSKSEVSEETPGPSKVKTGKPEETSLDTREKKTNSAPKSAAAHGITSGKAA 258

Query: 328 KRFKAADMAPPNANKQVYASIFTS 351
           KR  A      +   + Y S+FT+
Sbjct: 259 KRSIA-----DSEESEAYKSLFTT 277

Bos taurus (taxid: 9913)

>sp|A5GFW7|RTF2_PIG Protein RTF2 homolog OS=Sus scrofa GN=RTFDC1 PE=2 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 141/266 (53%), Gaps = 18/266 (6%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+IK +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV 268
            CG V S +ALKE+K+  C  C   F E D I++NG +E++++L+ RMEE +L+ K  K 
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRMEERRLRAKLGKK 198

Query: 269 KKVKNGEDCVGE-DVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAV 327
            K     + V + D++ ++   S  K G  E  S +    K     +    +G+S   A 
Sbjct: 199 TKKPKAAESVSKSDISEEAPGPSKMKAGKPEETSLDSREKKTSSAPRSAAAHGSSSGKAG 258

Query: 328 KRFKAAD--MAPPNANKQVYASIFTS 351
           K    A       +   + Y S+FT+
Sbjct: 259 KPVCGAPKRSIADSGESEAYKSLFTT 284

Sus scrofa (taxid: 9823)

>sp|Q99K95|RTF2_MOUSE Protein RTF2 homolog OS=Mus musculus GN=Rtfdc1 PE=2 SV=1

 Score =  129 bits (323), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 15/175 (8%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
           KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 160 YSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMR 208
            S+I+ +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKV 263
            CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L++RMEE +L+ 
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRMEERRLRA 193

Mus musculus (taxid: 10090)

>sp|Q5ZJN1|RTF2_CHICK Protein RTF2 homolog OS=Gallus gallus GN=RTFDC1 PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 143/288 (49%), Gaps = 53/288 (18%)

Query: 104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQ---- 159
           +K  K+D   + +++W  C LS E L  P V  +LG ++NK+A++  LL K+  K     
Sbjct: 19  RKAVKVDKTAELVARWYYCTLSQEKLCRPIVACELGRLYNKDAVIEFLLDKSADKTPMEA 78

Query: 160 YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMR 208
            S+IK LK++  + L+  P   G +E+  G         RF CP+ GLE NG++RF  +R
Sbjct: 79  ASHIKSLKNVTELNLADNPAWSGDKESKKGDTYDDIQSARFICPVVGLEMNGRHRFCFLR 138

Query: 209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV 268
            CG V S +ALKE+K+  C  C   F E D I++NGN+E++ VL++RME+ +LK K +K 
Sbjct: 139 NCGCVFSERALKEIKTEVCHKCGVPFQEEDVIILNGNKEDVEVLKKRMEDRRLKSKLEKK 198

Query: 269 ----------------------KKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKAL 306
                                  KVKN +DC+           SG KR  +  KS +   
Sbjct: 199 SKKCKSAESAAQQVTTEDSPGPSKVKNSKDCIASS--------SGEKRHIIFTKSSDDRS 250

Query: 307 AKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKK 354
           + V      G VN AS   A KR   AD A  N       +  +S+K+
Sbjct: 251 SSVP-----GKVNKAS--TATKR-SIADTATRNLRHTNLFTTHSSAKR 290

Gallus gallus (taxid: 9031)

>sp|Q54IS6|RTF2_DICDI Protein RTF2 homolog OS=Dictyostelium discoideum GN=rtfdc1 PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 29/202 (14%)

Query: 83  GGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIF 142
           G DGG        C L    +K+    D ++    KW  CAL+ + L EP V+D LG +F
Sbjct: 2   GLDGGTIPTR---CELVKTKKKEVKVFDKDQVDFGKWFLCALAQDTLSEPIVLDDLGNLF 58

Query: 143 NKEALVHALLSKNL--PKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF-N 199
           NK+ ++ ALL+ +L   K +S+I+ L+ +  V  S  P  E++     + CPIT +E  +
Sbjct: 59  NKDNIIEALLNGSLETSKNFSHIRSLRSIYTVNFSPNPAHEKDSTVSPWLCPITKIEVGS 118

Query: 200 GKYRFVAMRTCGHVLSTKALKEVKSS-----------------------SCLVCHEEFGE 236
             Y+F  ++TCGHV S KA KE+K+                        SC +C +E+  
Sbjct: 119 SNYKFKFLKTCGHVFSEKAFKELKNDDSNNNNNNNNNNKKEIDSSKDNLSCFLCSKEYIT 178

Query: 237 MDKILINGNEEEISVLRERMEE 258
            D I IN + EE   ++  ++E
Sbjct: 179 NDLITINPSGEEFEQMKVTLQE 200

Dictyostelium discoideum (taxid: 44689)

>sp|Q10154|RTF2_SCHPO Replication termination factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 24/205 (11%)

Query: 83  GGDGGATGAESRDCYLNMYAEKKPDKIDP------NEQRLSKWCNCALSNEPLREPCVID 136
           G DGG+    +          K+P K+ P         + S++  CA+++EPL  P V  
Sbjct: 2   GNDGGSLPTRNE-------LVKEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSC 54

Query: 137 KLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITG 195
            LG ++NK +++  LL ++ +PK  S+IK LKD++ +++       ++   + + CPIT 
Sbjct: 55  GLGKLYNKASILQMLLDRSSVPKSPSHIKSLKDVVQLQVEL-----DDSGKVLWLCPITR 109

Query: 196 LEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRER 255
              +  Y+F  +  CGHV    ALK+     C  C++ + E D I IN N E++  L +R
Sbjct: 110 HVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKR 169

Query: 256 MEEEKLKVKEKKVKKV-----KNGE 275
           + +  L  K   + K      KNG+
Sbjct: 170 LLDLALSEKTHSLNKASKKSNKNGD 194

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
388498124	361	unknown [Medicago truncatula]	0.956	0.983	0.641	1e-114
357480135	459	hypothetical protein MTR_4g131190 [Medic	0.948	0.766	0.644	1e-113
356500641	362	PREDICTED: uncharacterized protein LOC10	0.962	0.986	0.635	1e-113
255565007	375	conserved hypothetical protein [Ricinus	0.983	0.973	0.656	1e-112
356562589	345	PREDICTED: uncharacterized protein LOC10	0.894	0.962	0.632	1e-112
359484805	378	PREDICTED: uncharacterized protein LOC10	0.983	0.965	0.619	1e-112
224142407	346	predicted protein [Populus trichocarpa]	0.921	0.988	0.634	1e-109
15242923	354	uncharacterized protein [Arabidopsis tha	0.927	0.971	0.582	1e-100
297793321	354	hypothetical protein ARALYDRAFT_495908 [	0.927	0.971	0.582	1e-99
297743636	332	unnamed protein product [Vitis vinifera]	0.870	0.972	0.575	4e-98

>gi|388498124|gb|AFK37128.1| unknown [Medicago truncatula]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/374 (64%), Positives = 283/374 (75%), Gaps = 19/374 (5%)

Query: 2   RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPL 61
           R   QI ++SP   +   +V  +  ETL+ LK S+    QS  S YFTLNGK L + T  
Sbjct: 3   RKSFQILVQSPDLQIHPKSVTGD--ETLSDLKHSIFPNSQS--SFYFTLNGKPLSDDTN- 57

Query: 62  FKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCN 121
           F   +IAPLSTL L+ R+ GGGGDGG+T AESRDCYL MYAEKKPDK+DPNEQRLSKW N
Sbjct: 58  FSTSRIAPLSTLVLQSRLRGGGGDGGSTCAESRDCYLKMYAEKKPDKVDPNEQRLSKWQN 117

Query: 122 CALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAE 181
           CALSNEPLREPCVIDKLG IFNKE+L  ALL K LPK++ YIKGLKD+I +KL  VPG +
Sbjct: 118 CALSNEPLREPCVIDKLGNIFNKESLAEALLGKKLPKEFGYIKGLKDMIKIKLESVPGED 177

Query: 182 ENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKIL 241
              DG +F+CP+ G EFNGKY+F A+R CGHVLS KALKEVKSS+CLVCHEEFGE DKI+
Sbjct: 178 ---DGAKFRCPVAGREFNGKYKFFALRNCGHVLSAKALKEVKSSACLVCHEEFGEGDKIV 234

Query: 242 INGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKS 301
           INGNEEE+ VLRERMEEEK KV+EKK KKVKN +    + +++++ +++G K G     +
Sbjct: 235 INGNEEEVEVLRERMEEEKAKVREKKTKKVKNNDSEAVDGLSLEASKLTGTKHGL----N 290

Query: 302 GEKALAKVDVNGKVGN----VNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDF 357
            EKA AKVD NGKV N    VNG  G  A KRFKA D+AP NA  +VYASIFTSS+KS+F
Sbjct: 291 VEKASAKVDKNGKVANGNKGVNG--GAAAAKRFKATDIAPANAT-EVYASIFTSSRKSEF 347

Query: 358 KETYSCRSLPLGRN 371
           KETYSCRSLPLGRN
Sbjct: 348 KETYSCRSLPLGRN 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480135|ref|XP_003610353.1| hypothetical protein MTR_4g131190 [Medicago truncatula] gi|355511408|gb|AES92550.1| hypothetical protein MTR_4g131190 [Medicago truncatula]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/371 (64%), Positives = 282/371 (76%), Gaps = 19/371 (5%)

Query: 2   RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPL 61
           R   QI ++SP   +   +V  +  ETL+ LK S+    QS  S YFTLNGK L + T  
Sbjct: 3   RKSFQILVQSPDLQIHPKSVTGD--ETLSDLKHSIFPNSQS--SFYFTLNGKPLSDDTN- 57

Query: 62  FKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCN 121
           F   +IAPLSTL L+ R+ GGGGDGG+T AESRDCYL MYAEKKPDK+DPNEQRLSKW N
Sbjct: 58  FSTSRIAPLSTLVLQSRLRGGGGDGGSTCAESRDCYLKMYAEKKPDKVDPNEQRLSKWQN 117

Query: 122 CALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAE 181
           CALSNEPLREPCVIDKLG IFNKE+LV ALL K LPK++ YIKGLKD+I +KL  VPG +
Sbjct: 118 CALSNEPLREPCVIDKLGNIFNKESLVEALLGKKLPKEFGYIKGLKDMIKIKLESVPGED 177

Query: 182 ENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKIL 241
              DG +F+CP+ GLEFNGKY+F A+R CGHVLS KALKEVKSS+CLVCHEEFGE DKI+
Sbjct: 178 ---DGAKFRCPVAGLEFNGKYKFFALRNCGHVLSAKALKEVKSSACLVCHEEFGEGDKIV 234

Query: 242 INGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKS 301
           INGNEEE+ VLRERMEEEK KV+EKK KKVKN +    + +++++ +++G K G     +
Sbjct: 235 INGNEEEVEVLRERMEEEKAKVREKKTKKVKNNDSEAVDGLSLEASKLTGTKHGL----N 290

Query: 302 GEKALAKVDVNGKVGN----VNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDF 357
            EKA AKVD NGKV N    VNG  G  A KRFKA D+AP NA  +VYASIFTSS+KS+F
Sbjct: 291 VEKASAKVDKNGKVANGNKGVNG--GAAAAKRFKATDIAPANAT-EVYASIFTSSRKSEF 347

Query: 358 KETYSCRSLPL 368
           KETYSCRSLPL
Sbjct: 348 KETYSCRSLPL 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500641|ref|XP_003519140.1| PREDICTED: uncharacterized protein LOC100779501 [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/376 (63%), Positives = 284/376 (75%), Gaps = 19/376 (5%)

Query: 1   MRSKT-QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDEST 59
           M +K+ QI + SP   ++  +      ETL+ LK SL    QS  S YFT NGK L + T
Sbjct: 1   MNTKSLQILVHSPDLGISLQST--TNHETLSDLKNSLFP--QSHQSFYFTFNGKPLPDKT 56

Query: 60  PLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKW 119
           PL    Q  PLSTL LR R+ GGGGDGGATGAESRDCYLNMYA+KKPDK+DPNEQRLSKW
Sbjct: 57  PL---SQFPPLSTLSLRSRLLGGGGDGGATGAESRDCYLNMYADKKPDKVDPNEQRLSKW 113

Query: 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPG 179
            NCALSNEPLREPCVIDKLG IFNKEALV ALL K LPK++ +IKGLKD+INV+LS +PG
Sbjct: 114 HNCALSNEPLREPCVIDKLGNIFNKEALVEALLGKKLPKEFGHIKGLKDMINVQLSAIPG 173

Query: 180 AEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK 239
           A+   DG +FQCP+ GLEFNGKYRF A+R CGHVLS KAL+EVKSSSCLVCH+E+ ++DK
Sbjct: 174 AD---DGAKFQCPVAGLEFNGKYRFFALRNCGHVLSAKALREVKSSSCLVCHKEYADVDK 230

Query: 240 ILINGNEEEISVLRERMEEEKLKVKEKKVKKVK-NGEDCVGEDVAVDSLRVSGAKRGAVE 298
           +++NG++EE++VLRERMEEEK K++EKK KKVK NG D   + V+++  R+SG K G V+
Sbjct: 231 VVLNGSDEEVAVLRERMEEEKAKIREKKSKKVKNNGND---DGVSLEGTRLSGTKHG-VD 286

Query: 299 NKSGEKALAKVD---VNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKS 355
            K  EKA AKV+     G            A KRFKA D+AP NA K VYASIFTSS+KS
Sbjct: 287 GKGVEKASAKVERNGKVGNGNVGVNGGAAAAAKRFKAVDLAPANATKDVYASIFTSSRKS 346

Query: 356 DFKETYSCRSLPLGRN 371
           +FKETYSCRSLPLGRN
Sbjct: 347 EFKETYSCRSLPLGRN 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565007|ref|XP_002523496.1| conserved hypothetical protein [Ricinus communis] gi|223537203|gb|EEF38835.1| conserved hypothetical protein [Ricinus communis]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/370 (65%), Positives = 293/370 (79%), Gaps = 5/370 (1%)

Query: 6   QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLD-QSLSSLYFTLNGKILDESTPLFKN 64
           QIF++ P++ L TLT+ + Q  TL+ LK SL   + Q+LSS +FTLNGK L +STP+  N
Sbjct: 7   QIFLQLPNSKLQTLTLDSTQILTLHDLKLSLFPNNHQNLSSFFFTLNGKPLLDSTPI-PN 65

Query: 65  PQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCAL 124
           PQI  LSTL L  R+ GGGGDGGATGAESRDCYLNMYAEKKPDK+DPNEQRLSKW NCAL
Sbjct: 66  PQITSLSTLVLHSRLPGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCAL 125

Query: 125 SNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENG 184
           SNEPL +PCVIDKLG +FNKEALV AL+ K LPK++ YIKGLKD+IN+KL  +PG +E  
Sbjct: 126 SNEPLMQPCVIDKLGNVFNKEALVEALIGKKLPKEFGYIKGLKDMINIKLEPIPGEKEEL 185

Query: 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILING 244
              +F CPI+GLEFNGKY+F A++ CGHVLS KALKEVKSS+CLVC++EF E DKI+ING
Sbjct: 186 YSAKFHCPISGLEFNGKYKFYALKNCGHVLSAKALKEVKSSACLVCYKEFEEFDKIVING 245

Query: 245 NEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCV--GED-VAVDSLRVSGAKRGAVENKS 301
           ++EE++ LRER+EEE+LKV +KK KKVK GE  V  G+D V +D+ R+ G K G  ++K 
Sbjct: 246 SDEEVADLRERLEEERLKVHDKKSKKVKKGEVGVNGGDDCVDLDTSRLIGKKHGISDDKG 305

Query: 302 GEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFKETY 361
            EK ++KV  +GKV  V G     AVK+FKAADMAP NA K+VYASIFTSSKKSDFKETY
Sbjct: 306 VEKVVSKVVGSGKVEKVKGVGNGGAVKKFKAADMAPANATKEVYASIFTSSKKSDFKETY 365

Query: 362 SCRSLPLGRN 371
            CRSLPLGRN
Sbjct: 366 MCRSLPLGRN 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562589|ref|XP_003549552.1| PREDICTED: uncharacterized protein LOC100790159 [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/373 (63%), Positives = 272/373 (72%), Gaps = 41/373 (10%)

Query: 6   QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNP 65
           QI ++SP   ++       + ETL+ LK SL    QS  S YFT NGK L + TPL    
Sbjct: 7   QILVQSPDLGISLQPT--TKHETLSDLKHSLFP--QSHRSFYFTFNGKPLPDKTPL---S 59

Query: 66  QIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALS 125
           Q  PLSTL LR R+ GGGGDGGATGAESRDCYLNMYA+KKPDK+DPNEQRLSKW NCALS
Sbjct: 60  QFPPLSTLSLRSRLPGGGGDGGATGAESRDCYLNMYADKKPDKVDPNEQRLSKWHNCALS 119

Query: 126 NEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGD 185
           NEPLREPCVIDKLG IFNKE+LV ALL K LPK++ +IKGLKD+INV+LS +PGAE   D
Sbjct: 120 NEPLREPCVIDKLGNIFNKESLVEALLGKKLPKEFGHIKGLKDMINVQLSAIPGAE---D 176

Query: 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGN 245
           G +FQCPI GLEFNGKYRF A+R CGHVLS KAL+EVKSSSCLVCH+E+ ++DKI++NG+
Sbjct: 177 GAKFQCPIAGLEFNGKYRFFALRNCGHVLSAKALREVKSSSCLVCHKEYADLDKIVLNGS 236

Query: 246 EEEISVLRERMEEEKLKVKEKKVKKVK--NGEDCVGEDVAVDSLRVSGAKRGAVENKSGE 303
           +EE+ +LRERMEEEK K++EKK KKVK  NG+  V                        E
Sbjct: 237 DEEVVILRERMEEEKPKIREKKSKKVKHNNGDGGV------------------------E 272

Query: 304 KALAKVDVNGKV-----GNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFK 358
           KA AKV+ NGKV         G  G  A KRFKA D+AP NA K VYASIFTSS+KSDFK
Sbjct: 273 KASAKVERNGKVGNVALNGNGGGGGAAAAKRFKAVDLAPANATKDVYASIFTSSRKSDFK 332

Query: 359 ETYSCRSLPLGRN 371
           ETYSCRSLPLGRN
Sbjct: 333 ETYSCRSLPLGRN 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484805|ref|XP_002279315.2| PREDICTED: uncharacterized protein LOC100243282 [Vitis vinifera]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/378 (61%), Positives = 284/378 (75%), Gaps = 13/378 (3%)

Query: 2   RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPL 61
           +S+ QI I+SP   + T  +  N   TL +LK SLL   Q+L S +FTL+GK L +S+ L
Sbjct: 6   QSQIQILIQSPDLPIATRALTLNPNSTLRNLKLSLLP-PQTLDSFFFTLHGKALHDSSTL 64

Query: 62  FKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCN 121
            K+  I PLSTL LR R+ GGGGDGGATGAESRDCYLNMYA KKPDK+DPNEQRLSKW  
Sbjct: 65  QKS-GINPLSTLVLRFRLPGGGGDGGATGAESRDCYLNMYAVKKPDKVDPNEQRLSKWTT 123

Query: 122 CALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAE 181
           C+LS EPLR PCV+D+LG +FNKEALV  LL K LPK + +I+GLKD++ ++LS +PG E
Sbjct: 124 CSLSFEPLRHPCVVDRLGNVFNKEALVEGLLGKKLPKAFGHIRGLKDMVPIELSVIPGLE 183

Query: 182 ENGDGI----RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237
            +  G+    R+QCPITGLEFNGKYRF A++TCGHVLS KALKEVKSS+CLVCHE F E 
Sbjct: 184 SDNGGVSAGARYQCPITGLEFNGKYRFFALKTCGHVLSAKALKEVKSSACLVCHEGFKEE 243

Query: 238 DKILINGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVG--EDVAVDSLRVSGAKRG 295
           DKI ING+EEE++ LRERMEEE+ K++EKK KKVKNGE  V   EDV +DS R+SG K G
Sbjct: 244 DKIPINGSEEEVAALRERMEEERAKLREKKAKKVKNGEVGVNGDEDVYLDS-RLSGKKHG 302

Query: 296 AVENKSGEKALAKVDVNGKV--GNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSK 353
            ++ K+  +  AK++ NGK   G V        VKR KAA + PPNA K+VYASIFTSS+
Sbjct: 303 -IDAKAVGRVDAKMEKNGKAVNGGVVVKGEISGVKRLKAAQV-PPNATKEVYASIFTSSR 360

Query: 354 KSDFKETYSCRSLPLGRN 371
           KS+FKETY CRSLPLGRN
Sbjct: 361 KSEFKETYMCRSLPLGRN 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142407|ref|XP_002324550.1| predicted protein [Populus trichocarpa] gi|222865984|gb|EEF03115.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/375 (63%), Positives = 281/375 (74%), Gaps = 33/375 (8%)

Query: 1   MRSKT-QIFIKS--PSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDE 57
           M +K+ QIFI+S  P     TLT+   Q  TL +LK SL++ +Q+ SS YFTLNGK L +
Sbjct: 1   MHTKSHQIFIQSQNPQFKTQTLTLDPTQTLTLYNLKLSLITDNQNPSSFYFTLNGKPLKD 60

Query: 58  STPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLS 117
           ST L  NPQI PL TL L+ R+ GGGGDGGATGAESRDCYLNMYA+KKPDK+DP+E RLS
Sbjct: 61  STCL-PNPQITPLCTLILQVRLSGGGGDGGATGAESRDCYLNMYADKKPDKVDPHELRLS 119

Query: 118 KWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRV 177
           KW NC+LSNEPLR+PCVID+LG +FNKEALV AL+ K LPK++ YIKGLKD+I+++L  V
Sbjct: 120 KWLNCSLSNEPLRQPCVIDRLGNMFNKEALVEALIGKKLPKEFGYIKGLKDMIDIQLEVV 179

Query: 178 PGAEENGDG-IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236
           PG   +G G  RFQCP+TGLEFNGKY+F A++ CGHVLS KALKEVKSS CLVC++EF E
Sbjct: 180 PG---DGSGNARFQCPVTGLEFNGKYKFFALKNCGHVLSAKALKEVKSSECLVCYKEFEE 236

Query: 237 MDKILINGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGA 296
            DKI+ING +EE++VLRERMEEE+ K+KEKK+KKVKNGE        VD           
Sbjct: 237 CDKIVINGGDEEVAVLRERMEEERSKMKEKKMKKVKNGE-------GVD----------- 278

Query: 297 VENKSGEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSD 356
                  K + KV  NGKV NV G S   +VKRFKA DM P NA K+VYASIFTSSKK  
Sbjct: 279 -------KVVGKVKGNGKVENVKGVSHGGSVKRFKATDMVPTNATKEVYASIFTSSKKQS 331

Query: 357 FKETYSCRSLPLGRN 371
           FKETYSCRSLPLGRN
Sbjct: 332 FKETYSCRSLPLGRN 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242923|ref|NP_200610.1| uncharacterized protein [Arabidopsis thaliana] gi|34365743|gb|AAQ65183.1| At5g58020 [Arabidopsis thaliana] gi|110740832|dbj|BAE98513.1| hypothetical protein [Arabidopsis thaliana] gi|332009605|gb|AED96988.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/381 (58%), Positives = 270/381 (70%), Gaps = 37/381 (9%)

Query: 1   MRSKTQIFIKSPS-NSLTTLTVG-ANQFETLNHLKRSLLSLDQ--SLSSLYFTLNGKILD 56
           M  + QIF+KSP    +  L +  A    TL+ +  SLL   Q  S S+   TL+GK+L+
Sbjct: 1   MHIRRQIFVKSPDCQKVVALQLDPAQSLLTLSGIT-SLLESSQRISFSACSITLDGKLLN 59

Query: 57  ESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRL 116
            ST + +  ++  +S L L  R+ GGGGDGGATGAESRDCYLNMYAEKKPDK+DPNEQRL
Sbjct: 60  GSTRI-QVSKLPSVSMLTLFPRLRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 118

Query: 117 SKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSR 176
           SKW NCALSNEPL EPCVID LG +FNKE LVHALLSK LPKQ+SYIKGLKD++N+KL+ 
Sbjct: 119 SKWLNCALSNEPLAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYIKGLKDMVNIKLTP 178

Query: 177 VPGAE---ENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233
           V G++   ++    +FQCP++GLEFNGKY+F A+R CGHV+S KALKEVKSSSCLVCH +
Sbjct: 179 VAGSDGSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHAD 238

Query: 234 FGEMDKILINGNEEEISVLRERMEEEKLKVKEKK--VKKVKNGEDCVGEDVAVDSLRVSG 291
             + DKI+ING EEE+ +LRERMEEEK K++EKK   KK KNG   V +         +G
Sbjct: 239 VKDSDKIVINGTEEEVDLLRERMEEEKAKLREKKGVSKKSKNGAAVVAD---------TG 289

Query: 292 AKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTS 351
           AK            +AK  +    GNVNG      VK+FKAAD  P NA K+VYAS+FTS
Sbjct: 290 AK------------VAKRQIED--GNVNG--NGITVKKFKAADKVPVNATKEVYASLFTS 333

Query: 352 S-KKSDFKETYSCRSLPLGRN 371
           S KKSDF+ETYSCRSLPLGRN
Sbjct: 334 SKKKSDFRETYSCRSLPLGRN 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793321|ref|XP_002864545.1| hypothetical protein ARALYDRAFT_495908 [Arabidopsis lyrata subsp. lyrata] gi|297310380|gb|EFH40804.1| hypothetical protein ARALYDRAFT_495908 [Arabidopsis lyrata subsp. lyrata]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 222/381 (58%), Positives = 270/381 (70%), Gaps = 37/381 (9%)

Query: 1   MRSKTQIFIKSPS-NSLTTLTVGANQ-FETLNHLKRSLLSLDQ--SLSSLYFTLNGKILD 56
           M  + QIF+KSP    +  L +  +Q   TL+ +  SLL   Q  SLS     L+GK+L+
Sbjct: 1   MHCRRQIFVKSPDCQQVFALQLDPSQSVLTLSGIT-SLLESSQRNSLSDFSVALDGKLLN 59

Query: 57  ESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRL 116
            ST + +  ++  +S L L  R  GGGGDGGATGAESRDCYLNMYAEKKPDK+DPNEQRL
Sbjct: 60  GSTRI-QVSKLPSVSMLTLFPRFRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 118

Query: 117 SKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSR 176
           SKW NCALSNEPL EPCVID LG +FNKEALVHALLSK LPKQ+SYIKGLKD++N+KL+ 
Sbjct: 119 SKWLNCALSNEPLAEPCVIDLLGNLFNKEALVHALLSKRLPKQFSYIKGLKDMVNIKLTP 178

Query: 177 VPGAE---ENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233
           V G++   ++    +FQCP++GLEFNGKY+F A+R CGHV+S KALKEVKSSSCLVCH +
Sbjct: 179 VAGSDGSSQDTTSSQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHAD 238

Query: 234 FGEMDKILINGNEEEISVLRERMEEEKLKVKEKK--VKKVKNGEDCVGEDVAVDSLRVSG 291
             + DKI+ING EEE+ +LRERMEEEK K++EKK   KK KNG   V +         +G
Sbjct: 239 VKDSDKIVINGTEEEVDLLRERMEEEKAKLREKKGVSKKSKNGAAVVAD---------TG 289

Query: 292 AKRGAVENKSGEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTS 351
           AK            +AK  ++   GNVNG      VK+FKA D  P NA K+VYAS+FTS
Sbjct: 290 AK------------VAKRQMDD--GNVNG--NGITVKKFKAGDKVPVNATKEVYASLFTS 333

Query: 352 S-KKSDFKETYSCRSLPLGRN 371
           S KKSDFKETYSCRS+PLGRN
Sbjct: 334 SKKKSDFKETYSCRSIPLGRN 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743636|emb|CBI36519.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 213/370 (57%), Positives = 254/370 (68%), Gaps = 47/370 (12%)

Query: 2   RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPL 61
           +S+ QI I+SP   + T  +  N   TL +LK SLL   Q+L S +FTL+GK L +S+ L
Sbjct: 10  QSQIQILIQSPDLPIATRALTLNPNSTLRNLKLSLLP-PQTLDSFFFTLHGKALHDSSTL 68

Query: 62  FKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCN 121
            K+  I PLSTL LR R+ GGGGDGGATGAESRDCYLNMYA KKPDK+DPNEQRLSKW  
Sbjct: 69  QKS-GINPLSTLVLRFRLPGGGGDGGATGAESRDCYLNMYAVKKPDKVDPNEQRLSKWTT 127

Query: 122 CALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAE 181
           C+LS EPLR PCV+D+LG +FNKEALV  LL K LPK + +I+GLKD+            
Sbjct: 128 CSLSFEPLRHPCVVDRLGNVFNKEALVEGLLGKKLPKAFGHIRGLKDM------------ 175

Query: 182 ENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKIL 241
                    CPITGLEFNGKYRF A++TCGHVLS KALKEVKSS+CLVCHE F E DKI 
Sbjct: 176 ---------CPITGLEFNGKYRFFALKTCGHVLSAKALKEVKSSACLVCHEGFKEEDKIP 226

Query: 242 INGNEEEISVLRERMEEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKS 301
           ING+EEE++ LRERMEEE+ K++EKK KKVKNGE     D  ++              K+
Sbjct: 227 INGSEEEVAALRERMEEERAKLREKKAKKVKNGEAVGRVDAKME--------------KN 272

Query: 302 GEKALAKVDVNGKVGNVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSDFKETY 361
           G+     V V G++           VKR KAA + PPNA K+VYASIFTSS+KS+FKETY
Sbjct: 273 GKAVNGGVVVKGEIS---------GVKRLKAAQV-PPNATKEVYASIFTSSRKSEFKETY 322

Query: 362 SCRSLPLGRN 371
            CRSLPLGRN
Sbjct: 323 MCRSLPLGRN 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2147765	354	AT5G58020 "AT5G58020" [Arabido	0.681	0.714	0.556	5.6e-88
UNIPROTKB|Q9BY42	306	RTFDC1 "Protein RTF2 homolog"	0.673	0.816	0.330	3.9e-28
MGI|MGI:1913654	307	Rtfdc1 "replication terminatio	0.412	0.498	0.386	1.9e-26
ZFIN|ZDB-GENE-030131-4825	310	rtfdc1 "replication terminatio	0.412	0.493	0.375	4.6e-25
DICTYBASE|DDB_G0288549	273	DDB_G0288549 "DUF602 family pr	0.345	0.468	0.383	6.2e-24
WB|WBGene00007217	300	C01A2.5 [Caenorhabditis elegan	0.404	0.5	0.341	4.9e-21
POMBASE|SPAC1D4.09c	240	rtf2 "replication termination	0.398	0.616	0.318	8.3e-19
UNIPROTKB|G4MN58	270	MGG_05603 "Uncharacterized pro	0.369	0.507	0.278	1.1e-07
CGD|CAL0001604	230	orf19.2472 [Candida albicans (	0.369	0.595	0.313	2.1e-07
UNIPROTKB|Q5AA12	230	CaO19.10009 "Putative uncharac	0.369	0.595	0.313	2.1e-07

TAIR|locus:2147765 AT5G58020 "AT5G58020" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
 Identities = 147/264 (55%), Positives = 182/264 (68%)

Query:     1 MRSKTQIFIKSPS-NSLTTLTVG-ANQFETLNHLKRXXXXXXXXXXXXY-FTLNGKILDE 57
             M  + QIF+KSP    +  L +  A    TL+ +                 TL+GK+L+ 
Sbjct:     1 MHIRRQIFVKSPDCQKVVALQLDPAQSLLTLSGITSLLESSQRISFSACSITLDGKLLNG 60

Query:    58 STPL--FKNPQIAPLSTLYLRQRVFXXXXXXXXXXXESRDCYLNMYAEKKPDKIDPNEQR 115
             ST +   K P ++ L TL+ R R             ESRDCYLNMYAEKKPDK+DPNEQR
Sbjct:    61 STRIQVSKLPSVSML-TLFPRLR--GGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQR 117

Query:   116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLS 175
             LSKW NCALSNEPL EPCVID LG +FNKE LVHALLSK LPKQ+SYIKGLKD++N+KL+
Sbjct:   118 LSKWLNCALSNEPLAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYIKGLKDMVNIKLT 177

Query:   176 RVPGAE---ENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHE 232
              V G++   ++    +FQCP++GLEFNGKY+F A+R CGHV+S KALKEVKSSSCLVCH 
Sbjct:   178 PVAGSDGSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHA 237

Query:   233 EFGEMDKILINGNEEEISVLRERM 256
             +  + DKI+ING EEE+ +LRERM
Sbjct:   238 DVKDSDKIVINGTEEEVDLLRERM 261

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BY42 RTFDC1 "Protein RTF2 homolog" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 91/275 (33%), Positives = 135/275 (49%)

Query:   104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
             KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct:    19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query:   160 YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMR 208
              S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R
Sbjct:    79 ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query:   209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMXXXXXXXXXXXX 268
              CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RM            
Sbjct:   139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIMLNGTKEDVDVLKTRMEERRLRAKLEKK 198

Query:   269 XXXXNGEDCVGE-DVAVDSLRVSGAKRGAVENKS---GEKA--LAKXXXXXXXXXXXXXX 322
                    + V + DV+ ++   S  K G  E  S    EK   LA               
Sbjct:   199 TKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAMNESSSGKAG 258

Query:   323 XXP--AVKRFKAADMAPPNANKQVYASIFTSSKKS 355
               P  A KR   AD     A K ++ +  +S+K+S
Sbjct:   259 KPPCGATKR-SIADSEESEAYKSLFTT-HSSAKRS 291

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913654 Rtfdc1 "replication termination factor 2 domain containing 1" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 65/168 (38%), Positives = 102/168 (60%)

Query:   104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQ 159
             KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K 
Sbjct:    19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query:   160 YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMR 208
              S+I+ +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R
Sbjct:    79 ASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query:   209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 256
              CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L++RM
Sbjct:   139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRM 186

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-4825 rtfdc1 "replication termination factor 2 domain containing 1" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 63/168 (37%), Positives = 99/168 (58%)

Query:   104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQ---- 159
             KK +K+D N +  +KW  CALS E L+ P V  +LG ++NK+A++  LL K+  +     
Sbjct:    19 KKVEKVDKNAELAAKWKYCALSQEKLKRPIVACELGRLYNKDAIIEYLLDKSAERPNTEV 78

Query:   160 YSYIKGLKDLINVKLSRVP---GAEEN--GDGIR------FQCPITGLEFNGKYRFVAMR 208
              ++I+ LKD+  + L+  P   G   N  GD         F CP+ GLE +GK++F  ++
Sbjct:    79 VAHIRSLKDVKELNLTDNPAWEGERRNIKGDCYEDMHLAMFICPVVGLEMSGKHKFFFLQ 138

Query:   209 TCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 256
             TCG V S +AL+EVK+  C  C + F E D +++NG +EE+  L++ M
Sbjct:   139 TCGCVFSERALREVKTVICHKCGDPFQEEDLVVLNGTKEEVETLQKAM 186

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0288549 DDB_G0288549 "DUF602 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 234 (87.4 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 51/133 (38%), Positives = 80/133 (60%)

Query:    96 CYLNMYAEKKPDKI-DPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154
             C L +  +KK  K+ D ++    KW  CAL+ + L EP V+D LG +FNK+ ++ ALL+ 
Sbjct:    12 CEL-VKTKKKEVKVFDKDQVDFGKWFLCALAQDTLSEPIVLDDLGNLFNKDNIIEALLNG 70

Query:   155 NLP--KQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF-NGKYRFVAMRTCG 211
             +L   K +S+I+ L+ +  V  S  P  E++     + CPIT +E  +  Y+F  ++TCG
Sbjct:    71 SLETSKNFSHIRSLRSIYTVNFSPNPAHEKDSTVSPWLCPITKIEVGSSNYKFKFLKTCG 130

Query:   212 HVLSTKALKEVKS 224
             HV S KA KE+K+
Sbjct:   131 HVFSEKAFKELKN 143

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00007217 C01A2.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/161 (34%), Positives = 90/161 (55%)

Query:   104 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYS-- 161
             KK +K+D + +  +KW NC L+  PL+ P +  + G ++NKE +++++LSK + K  S  
Sbjct:    19 KKKEKLDKHVKNATKWRNCQLTQLPLKRPVIACRFGKLYNKEDVINSILSKTISKSASAS 78

Query:   162 YIKGLKDLINVKLSR--------VPGAEENG-DGIRFQCPITGLEFNGKYRFVAMRTCGH 212
             +IKG KD + +KL+         V G + N  +   F CPIT +  NG   F+    CG 
Sbjct:    79 HIKGPKDFVELKLTLNKDFKRGDVKGDDYNDVNQTEFICPITNVPMNGIQSFLVNWQCGC 138

Query:   213 VLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLR 253
             V S KA +EVKSS+C VC   +     +++N   E++ + +
Sbjct:   139 VYSEKAQQEVKSSNCHVCGGPYDATKMVILNPEPEQLELYK 179

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

POMBASE|SPAC1D4.09c rtf2 "replication termination factor Rtf2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 51/160 (31%), Positives = 89/160 (55%)

Query:   104 KKPDKIDP------NEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-L 156
             K+P K+ P         + S++  CA+++EPL  P V   LG ++NK +++  LL ++ +
Sbjct:    16 KEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSV 75

Query:   157 PKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLST 216
             PK  S+IK LKD++ +++      +++G  + + CPIT    +  Y+F  +  CGHV   
Sbjct:    76 PKSPSHIKSLKDVVQLQVE----LDDSGK-VLWLCPITRHVMSDTYQFAYIVPCGHVFEY 130

Query:   217 KALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 256
              ALK+     C  C++ + E D I IN N E++  L +R+
Sbjct:   131 SALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKRL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0006274 "DNA replication termination" evidence=NAS

UNIPROTKB|G4MN58 MGG_05603 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 42/151 (27%), Positives = 75/151 (49%)

Query:   119 WCNCALSNEPL-REPCVIDKLGTIFNKEALVHALL-------SKNLPKQYSY--IKGLKD 168
             W +CA+S+E L  +  V D  G + N EA++  L+            ++++   I  L+D
Sbjct:    39 WTHCAISDEKLDMDNAVSDWRGRLLNYEAVLQGLMPSEEADDGSGKAQRFAETGITSLRD 98

Query:   169 LINVKLSRV--PGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSS 226
             ++ +K  +   PG +   D I + CP++  E     + V +  CGHV +  A+ ++   +
Sbjct:    99 VVKLKFKKYAPPGHKAESDQI-WACPVSLKEIGPATKAVYLVPCGHVFAELAMDKITDLA 157

Query:   227 CLVCHEEFGEMDKILINGNEE-EISVLRERM 256
             C  C E F + + I I   E+ E+  LR+RM
Sbjct:   158 CPECSETFEKQNVISILPREDAELERLRQRM 188

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0001604 orf19.2472 [Candida albicans (taxid:5476)]

 Score = 139 (54.0 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 52/166 (31%), Positives = 86/166 (51%)

Query:   110 DPNEQRLSKWCNCALSNEPL--REPCVIDKLGTIFNKEALVHALL----SKNLPK-QYSY 162
             +  E+ L K C+  LS+ PL   +P V D  G ++ KE L+  LL    +K+  K ++S+
Sbjct:    30 EDKEEDLIKVCH--LSSLPLYNNDPIVSDYKGKLYIKEKLLQYLLDIKTNKHSVKSEFSH 87

Query:   163 IKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV 222
             IK LKD+  V +S     +E       +CP+T  E    Y +  +R+CG ++S KAL E 
Sbjct:    88 IKSLKDICPVTVSWTIINKEPF----IECPVTK-EVQKSYLY--LRSCGCLISKKALNEF 140

Query:   223 KSSS----CLVCHEEFGEMDKILING---------NEEEISVLRER 255
               +     C  C+ +F + D ++++          NEE IS+LR++
Sbjct:   141 SKTKTEKKCPNCNVDFCDFDIVMLDPLNLKKNSDINEENISILRQK 186

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AA12 CaO19.10009 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 139 (54.0 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 52/166 (31%), Positives = 86/166 (51%)

Query:   110 DPNEQRLSKWCNCALSNEPL--REPCVIDKLGTIFNKEALVHALL----SKNLPK-QYSY 162
             +  E+ L K C+  LS+ PL   +P V D  G ++ KE L+  LL    +K+  K ++S+
Sbjct:    30 EDKEEDLIKVCH--LSSLPLYNNDPIVSDYKGKLYIKEKLLQYLLDIKTNKHSVKSEFSH 87

Query:   163 IKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV 222
             IK LKD+  V +S     +E       +CP+T  E    Y +  +R+CG ++S KAL E 
Sbjct:    88 IKSLKDICPVTVSWTIINKEPF----IECPVTK-EVQKSYLY--LRSCGCLISKKALNEF 140

Query:   223 KSSS----CLVCHEEFGEMDKILING---------NEEEISVLRER 255
               +     C  C+ +F + D ++++          NEE IS+LR++
Sbjct:   141 SKTKTEKKCPNCNVDFCDFDIVMLDPLNLKKNSDINEENISILRQK 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.3283.1 hypothetical protein (346 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam04641	254	pfam04641, Rtf2, Replication termination factor 2	6e-82
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	7e-04

>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2

 Score =  250 bits (640), Expect = 6e-82
 Identities = 113/280 (40%), Positives = 161/280 (57%), Gaps = 31/280 (11%)

Query: 82  GGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTI 141
            G DGG+    +RD  + +  +KKP+K+D +E+RL++W  CALS EPL++P V D+LG +
Sbjct: 1   MGNDGGSI--PTRDELVKL--KKKPEKVDKDEERLARWFTCALSQEPLKKPIVADRLGNL 56

Query: 142 FNKEALVHALLSKN--LPKQYSYIKGLKDLINVKLSRVPGAEENGDGI---RFQCPITGL 196
           +NK+A++ ALL K+  LPK +S+IKGLKD++ +KL+  P  E + D      F CP+TGL
Sbjct: 57  YNKDAVLEALLDKSKSLPKAFSHIKGLKDVVELKLTPNPAFEGSKDDNKEAPFICPVTGL 116

Query: 197 EFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 256
           E NGKY+FVA+  CG V S KALKEVKS  C VC + + E D + +N  EEE+ +L+ R+
Sbjct: 117 EMNGKYKFVALWPCGCVFSEKALKEVKSKVCPVCGKPYSEEDVVPLNPTEEEVELLKARL 176

Query: 257 EEEKLKVKEKKVKKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDVNGKVG 316
           EEE+ K K+KK KK                       +      S  +A     V  ++ 
Sbjct: 177 EEERAKKKKKKKKK---------------------KTKKNNATGSSAEATVSSAVPTELS 215

Query: 317 NVNGASGNPAVKRFKAADMAPPNANKQVYASIFTSSKKSD 356
           +  G     A K  K   +AP N   +VY S+FTS KK  
Sbjct: 216 SGAG-QVGEAKKLKKKRSIAPDNEKSEVYKSLFTSHKKEK 254

It is vital for effective cell-replication that replication is not stalled at any point by, for instance, damaged bases. Rtf2 stabilizes the replication fork stalled at the site-specific replication barrier RTS1 by preventing replication restart until completion of DNA synthesis by a converging replication fork initiated at a flanking origin. The RTS1 element terminates replication forks that are moving in the cen2-distal direction while allowing forks moving in the cen2-proximal direction to pass through the region. Rtf2 contains a C2HC2 motif related to the C3HC4 RING-finger motif, and would appear to fold up, creating a RING finger-like structure but forming only one functional Zn2+ ion-binding site. Length = 254

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-VKSSSCLVCH 231
            F CPI+      +     M  CGHV S KAL++  K+     C 
Sbjct: 10  IFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
KOG3113	293	consensus Uncharacterized conserved protein [Funct	100.0
PF04641	260	Rtf2: Rtf2 RING-finger	100.0
KOG3039	303	consensus Uncharacterized conserved protein [Funct	99.89
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	99.86
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.84
PTZ00044	76	ubiquitin; Provisional	99.81
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.8
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.77
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.77
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.76
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.76
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.76
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.74
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.73
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.68
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.66
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.65
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.63
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.63
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.62
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.61
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.59
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.59
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.58
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.52
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.5
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.49
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.43
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.4
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.36
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.26
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.23
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.14
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.11
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.09
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.01
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.99
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.98
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.89
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	98.71
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.67
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.55
PLN02560	308	enoyl-CoA reductase	98.45
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.39
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.31
PF13019	162	Telomere_Sde2: Telomere stability and silencing	98.22
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.15
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.14
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.09
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.08
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.03
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.99
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.81
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.78
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.77
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.64
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.58
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.5
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.44
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	97.32
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.15
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.14
PF14634	44	zf-RING_5: zinc-RING finger domain	97.11
KOG4495	110	consensus RNA polymerase II transcription elongati	96.76
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	96.66
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	96.65
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	96.6
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.57
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.48
COG5109	396	Uncharacterized conserved protein, contains RING Z	96.46
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	96.3
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.22
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	96.22
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	96.03
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	95.86
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	95.74
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	95.68
PHA02929	238	N1R/p28-like protein; Provisional	95.67
PHA02926	242	zinc finger-like protein; Provisional	95.44
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	95.28
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.14
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	95.08
PRK07440	70	hypothetical protein; Provisional	95.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.95
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	94.91
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	94.81
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	94.71
PF14453	57	ThiS-like: ThiS-like ubiquitin	94.51
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	94.19
PRK06437	67	hypothetical protein; Provisional	93.71
PRK05659	66	sulfur carrier protein ThiS; Validated	93.68
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.64
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	93.62
PRK08364	70	sulfur carrier protein ThiS; Provisional	93.4
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	93.37
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	93.2
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	93.16
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	93.16
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	93.06
KOG1639	297	consensus Steroid reductase required for elongatio	93.05
PRK05863	65	sulfur carrier protein ThiS; Provisional	92.95
PRK06944	65	sulfur carrier protein ThiS; Provisional	92.76
KOG4739	233	consensus Uncharacterized protein involved in syna	92.75
PRK08053	66	sulfur carrier protein ThiS; Provisional	92.6
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	92.22
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	92.21
KOG0289	506	consensus mRNA splicing factor [General function p	91.97
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	91.93
PRK07696	67	sulfur carrier protein ThiS; Provisional	91.57
PRK06266	178	transcription initiation factor E subunit alpha; V	91.55
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	91.45
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	91.19
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	90.51
PRK06083	84	sulfur carrier protein ThiS; Provisional	90.35
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	90.28
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	90.22
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	89.77
PRK06488	65	sulfur carrier protein ThiS; Validated	89.66
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	89.65
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	89.64
KOG2979	262	consensus Protein involved in DNA repair [General	89.48
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	89.37
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	89.13
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	88.92
KOG0013	231	consensus Uncharacterized conserved protein [Funct	88.74
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	88.41
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	88.2
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	87.3
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	87.26
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	86.82
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	85.84
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	85.61
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	84.99
KOG4583	391	consensus Membrane-associated ER protein involved	84.62
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	83.86
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	83.18
PF12754	309	Blt1: Cell-cycle control medial ring component; In	82.71
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.2
KOG2169	636	consensus Zn-finger transcription factor [Transcri	82.14
COG5222	427	Uncharacterized conserved protein, contains RING Z	82.1
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	82.07
COG5152	259	Uncharacterized conserved protein, contains RING a	81.4
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	81.22

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-75  Score=545.54  Aligned_cols=282  Identities=41%  Similarity=0.615  Sum_probs=218.4

Q ss_pred             CCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC-CCCCcc
Q 017480           82 GGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK-NLPKQY  160 (371)
Q Consensus        82 ~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k-~~~~~~  160 (371)
                      ||+|||||  |+|||||++  .+|+|++|+++++.++|.+|+||++||+.|||+|++|+|||||+||++||++ .+|+.+
T Consensus         1 mG~DGGti--p~R~eLVk~--~kK~ek~Dkd~~r~sqw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksa   76 (293)
T KOG3113|consen    1 MGCDGGTI--PKRDELVKE--PKKVEKVDKDAERVSQWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSA   76 (293)
T ss_pred             CCCCCCCc--cchhhhhhC--CCCcCccChhHHHHHHHhhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcch
Confidence            79999999  899999998  9999999999999999999999999999999999999999999999999999 689999


Q ss_pred             CccCCCCCceeeeeeecCCCCCCC-------CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480          161 SYIKGLKDLINVKLSRVPGAEENG-------DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE  233 (371)
Q Consensus       161 ~HIksLKDlv~Lklt~n~~~~~~~-------~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~  233 (371)
                      +||+||||+++|++|.||++.+|.       ..++||||||+.+|||.++|+|||+||||||++||+|+++..|++||.+
T Consensus        77 ShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~  156 (293)
T KOG3113|consen   77 SHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAA  156 (293)
T ss_pred             hhhcchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCc
Confidence            999999999999999999885422       4689999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEecCChHHHHHHHHHHHHHHHhhhhhhh-hhhcCCCCccCCccccccccccccccCccccccccccccccccc
Q 017480          234 FGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV-KKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDVN  312 (371)
Q Consensus       234 f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~~~kk~-kk~k~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  312 (371)
                      |.++|+|+|||++||++.|+.|||+++++.+.+|+ ||.|+.+..++. ......+.+..+....+....+.....++..
T Consensus       157 y~~~dvIvlNg~~E~~dllk~rme~~kak~k~~Kk~Kk~KK~~~~~e~-a~~~~~~~s~~k~a~~e~~s~~~~~K~~d~~  235 (293)
T KOG3113|consen  157 YQEDDVIVLNGTEEDVDLLKTRMEERKAKAKLEKKDKKPKKAESKSEP-ASEKAPGPSKEKTAKAEEPSTSSKEKAVDLA  235 (293)
T ss_pred             ccccCeEeeCCCHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-hhhhcCCccccccccCCCCcccchhhhccch
Confidence            99999999999999999999999999998875443 332332222111 0000000111122111111100000011112


Q ss_pred             CcccCCCCCCCCchhhhhhhc-ccCCCCCchhhhhhcccCCCC-CCCccceeeccccCCC
Q 017480          313 GKVGNVNGASGNPAVKRFKAA-DMAPPNANKQVYASIFTSSKK-SDFKETYSCRSLPLGR  370 (371)
Q Consensus       313 ~~~~~~~~~~~~~~~k~~k~~-~~~~~~a~~~vykSlFts~~~-~~~~~~~~~~~~~~~~  370 (371)
                      .+....+. ..++..++-|+. ++++|.++ +|||||||||++ .++.|+|.|+..|||+
T Consensus       236 ~kl~~~n~-~~~~k~~~~ks~~sV~~~~~s-e~yKsLFTt~k~~kd~~~~hwvt~~p~~~  293 (293)
T KOG3113|consen  236 KKLTAMNE-SKAGKPPCGKSKTSVADPETS-EVYKSLFTTHKSAKDEEEAHWVTYNPLYF  293 (293)
T ss_pred             hhhhhhhh-ccccccccccccCcccchhHH-HHHHHHHhhhhhhcccccceeEeeccccC
Confidence            22111222 233334444444 77776655 999999999966 4899999999999986

>PF04641 Rtf2: Rtf2 RING-finger

Probab=100.00  E-value=1.2e-65  Score=491.89  Aligned_cols=182  Identities=50%  Similarity=0.836  Sum_probs=169.3

Q ss_pred             CCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCC----CC
Q 017480           82 GGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LP  157 (371)
Q Consensus        82 ~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~----~~  157 (371)
                      ||+|||||  |+|++||++  +++++++|+++.+.++|+|||||++||+.|||+|++|+|||||+||||||+++    .+
T Consensus         1 MG~DGGsi--~~R~~lv~~--~~k~~~~d~~~~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~   76 (260)
T PF04641_consen    1 MGNDGGSI--PKRRELVKT--KKKDEKVDKEEEREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLP   76 (260)
T ss_pred             CCCCCCcc--chHHHHHhC--cccccccCHhHHhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCc
Confidence            79999999  899999998  88889999999999999999999999999999999999999999999999984    57


Q ss_pred             CccCccCCCCCceeeeeeecCCCCCC------CCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-cCCCCCC
Q 017480          158 KQYSYIKGLKDLINVKLSRVPGAEEN------GDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-SSSCLVC  230 (371)
Q Consensus       158 ~~~~HIksLKDlv~Lklt~n~~~~~~------~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-~~~CpvC  230 (371)
                      +.+.||++||||++|+|++|+++.+.      ...++|+||||+++|||+++||||||||||||++||++++ +..||+|
T Consensus        77 ~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c  156 (260)
T PF04641_consen   77 KTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVC  156 (260)
T ss_pred             cccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhccccccccc
Confidence            78899999999999999999876532      3578999999999999999999999999999999999999 8899999


Q ss_pred             CCCcCCCceEEecCChHHHHHHHHHHHHHHHhhhhhh
Q 017480          231 HEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKK  267 (371)
Q Consensus       231 g~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~~~kk  267 (371)
                      |++|++.|||+|||++||++.|+++|+.++++.+.++
T Consensus       157 ~~~f~~~DiI~Lnp~~ee~~~l~~~~~~~~~~~k~~k  193 (260)
T PF04641_consen  157 GKPFTEEDIIPLNPPEEELEKLRERMEERKAKKKKKK  193 (260)
T ss_pred             CCccccCCEEEecCCccHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999999999999888865443

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=9.9e-24  Score=197.92  Aligned_cols=129  Identities=24%  Similarity=0.426  Sum_probs=111.4

Q ss_pred             ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCC--------------------------------------
Q 017480          116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLP--------------------------------------  157 (371)
Q Consensus       116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~--------------------------------------  157 (371)
                      .-.|++|.|++||+++| |+|.+|+||++|+||||+|.++..                                      
T Consensus        40 iK~FdcCsLtLqPc~dP-vit~~GylfdrEaILe~ilaqKke~arrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e  118 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDP-VITPDGYLFDREAILEYILAQKKEIARRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQE  118 (303)
T ss_pred             cCCcceeeeecccccCC-ccCCCCeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhc
Confidence            46799999999999999 788999999999999999976410                                      


Q ss_pred             --------------------------------------------------------------------CccCccCCCCCc
Q 017480          158 --------------------------------------------------------------------KQYSYIKGLKDL  169 (371)
Q Consensus       158 --------------------------------------------------------------------~~~~HIksLKDl  169 (371)
                                                                                          |..+.+..||||
T Consensus       119 ~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k~lpsFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL  198 (303)
T KOG3039|consen  119 STPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLKTLPSFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDL  198 (303)
T ss_pred             cccccccccCCCCcchhhhccCccccCCccccCccccccccccceecCccCchhhhhcccCCCceeeccCCCCccchhhc
Confidence                                                                                012566689999


Q ss_pred             eeeeeeecCCCCCC----CCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEec
Q 017480          170 INVKLSRVPGAEEN----GDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       170 v~Lklt~n~~~~~~----~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      ++++||+-++.+..    ....+|+||||..++++.++++||+||||||..+|++.+  ++++||+||+|.++.|||.|+
T Consensus       199 ~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq  278 (303)
T KOG3039|consen  199 FAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ  278 (303)
T ss_pred             ceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence            99999997754321    134789999999999999999999999999999999998  489999999999999999999


Q ss_pred             CC
Q 017480          244 GN  245 (371)
Q Consensus       244 p~  245 (371)
                      ..
T Consensus       279 rG  280 (303)
T KOG3039|consen  279 RG  280 (303)
T ss_pred             cc
Confidence            53

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=7.9e-22  Score=194.81  Aligned_cols=140  Identities=27%  Similarity=0.369  Sum_probs=126.7

Q ss_pred             hhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecC
Q 017480           99 NMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVP  178 (371)
Q Consensus        99 ~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~  178 (371)
                      ..|..||++-......++.+|.||+||..|+..| ||+.+|.+|+-.+|+.||-.+..+|..|...+.+|||.|+|..|.
T Consensus        20 ~~~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~P-vC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F~Kns   98 (518)
T KOG0883|consen   20 SIYGGKKDTGENRTQFKRLPFNHCSLTMLPFEDP-VCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKFHKNS   98 (518)
T ss_pred             hhcCCCCCCcccccccccCChhhceeccccccCc-ccccCCcEEeeehhhHHHHHcCCCCCCCCccccccceeeeeccCC
Confidence            3455666664434557789999999999999999 899999999999999999999999999999999999999999986


Q ss_pred             CCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEec-CCh
Q 017480          179 GAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILIN-GNE  246 (371)
Q Consensus       179 ~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Ln-p~~  246 (371)
                             .+.|+|||+.+.|+..+++|++++.|+|||++|++++.    .+..++.++||+..|||+|| |+.
T Consensus        99 -------~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQdP~~  164 (518)
T KOG0883|consen   99 -------EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQDPNN  164 (518)
T ss_pred             -------CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeecCcch
Confidence                   57899999999999999999999999999999999985    67899999999999999999 654

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.84  E-value=5.6e-21  Score=149.91  Aligned_cols=73  Identities=25%  Similarity=0.402  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+.  +  +++++|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||+||
T Consensus         1 mqi~vk~~--~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL-~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRAQ--N--THTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATL-GQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEECC--C--EEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCH-HHcCCCCCCEEEEEEecCCC
Confidence            99999995  2  5789999999999999999999 9999999999999999999999 99999999999999999996

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.81  E-value=7.2e-20  Score=143.43  Aligned_cols=75  Identities=20%  Similarity=0.305  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+++|+  ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||.+|++||
T Consensus         1 m~i~vk~~~G~--~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l-~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGK--KQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKL-SDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcH-HHcCCCCCCEEEEEEEccCC
Confidence            89999999997  7788999999999999999999 9999999999999999999999 99999999999999999986

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.80  E-value=1.2e-19  Score=152.06  Aligned_cols=77  Identities=21%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||++.|+  +++|+|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||++||+|
T Consensus        26 ~~M~I~Vk~l~G~--~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL-~dy~I~~~stL~l~~~l~G  102 (103)
T cd01802          26 DTMELFIETLTGT--CFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL-NDYNISEGCTLKLVLAMRG  102 (103)
T ss_pred             CCEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEecCC
Confidence            4699999999997  7889999999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus       103 G  103 (103)
T cd01802         103 G  103 (103)
T ss_pred             C
Confidence            6

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=1.6e-19  Score=159.47  Aligned_cols=77  Identities=26%  Similarity=0.365  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      |||||+++.++  ++++++..++||..+|++|+.. |||++||||+|+|++|+|+.+| .||+|+..+||||++||+||+
T Consensus         1 m~ifVk~l~~k--ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtl-SDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGK--TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             Cccchhhcccc--ceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCcc-ccccccccceEEEEEEecCCc
Confidence            89999999997  7889999999999999999999 9999999999999999999999 999999999999999999886


Q ss_pred             C
Q 017480           84 G   84 (371)
Q Consensus        84 ~   84 (371)
                      .
T Consensus        78 k   78 (156)
T KOG0004|consen   78 K   78 (156)
T ss_pred             c
Confidence            4

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=4e-20  Score=154.16  Aligned_cols=75  Identities=27%  Similarity=0.376  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      |||||+++.|+  |++|+|++++||.+||+.|+.. |||+++|+|+|+|++|+|+.|| ++|||+.++|||+.+||+||
T Consensus         1 ~~~~~~~~~GK--T~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tl-a~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGK--TITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCc--eEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcc-cccCccchhhhhhhHHHhcC
Confidence            89999999998  8889999999999999999999 9999999999999999999999 99999999999999999987

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.76  E-value=1e-18  Score=137.03  Aligned_cols=73  Identities=16%  Similarity=0.384  Sum_probs=70.1

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||++.|+  +++|++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|||++++||+|.+|++||
T Consensus         1 i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL-~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGR--SSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPL-GEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCC--EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCH-HHcCCCCCCEEEEEEEccCC
Confidence            799999997  7788899999999999999999 9999999999999999999999 99999999999999999986

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.76  E-value=1.2e-18  Score=136.54  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      ||||||+.+|+  +++|+|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|||++++||||++|.
T Consensus         1 m~i~vk~~~G~--~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L-~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGR--ECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRL-SDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCH-HHCCCCCCCEEEEEEcC
Confidence            89999999997  7788999999999999999999 9999999999999999999999 99999999999999985

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01803 Ubiquitin Ubiquitin

Probab=99.76  E-value=2e-18  Score=134.41  Aligned_cols=75  Identities=27%  Similarity=0.373  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+.+|+  ++.+++++++||++||++|+.. |+|+++|+|+|+|++|+|+.+| ++|+|+++++|||.+|++||
T Consensus         1 m~i~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L-~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCC--EEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcH-HHcCCCCCCEEEEEEEccCC
Confidence            89999999997  6788999999999999999999 9999999999999999999999 99999999999999999997

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.74  E-value=7.5e-18  Score=131.14  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      |||+||+++|+  ++.+++++++||++||++|++. |+|+++|+|+|+|+.|+|+.+| ++|+|+++++|||.+|++||
T Consensus         1 m~i~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl-~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTA-ADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCH-HHcCCCCCCEEEEEEEccCC
Confidence            89999999997  6778899999999999999999 9999999999999999999999 99999999999999999987

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.73  E-value=8.9e-18  Score=133.87  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            5 TQIFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ||||||++.|+. +++++ +.+++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|||++++||+|.+|+-
T Consensus         1 M~I~vk~~~G~~-~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL-~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKE-TRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTL-FDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCE-EEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCH-HHcCCCCCCEEEEEEecC
Confidence            999999999972 35785 78899999999999999 9999999999999999999999 999999999999999974

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.68  E-value=9.2e-17  Score=127.73  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=71.4

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .|||+||+..|+  +++|++++++||++||.+|++. |+|+++|+|+|+|+.|+|+ +| ++|||.+++||+|+..++||
T Consensus         1 ~m~I~Vk~~~G~--~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L-~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           1 PMNLNIHSTTGT--RFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KL-QDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             CeEEEEEECCCC--EEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cH-HHcCCCCCCEEEEEeecccc
Confidence            499999999997  6789999999999999999999 9999999999999999998 99 99999999999999999987

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.66  E-value=1.6e-16  Score=123.15  Aligned_cols=69  Identities=17%  Similarity=0.284  Sum_probs=66.1

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ||||+..|+  ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|+++|||||+.|
T Consensus         1 i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l-~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGH--TFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTI-QECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCC--EEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEeC
Confidence            699999997  7889999999999999999999 9999999999999999999999 9999999999999876

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.65  E-value=4.2e-16  Score=122.20  Aligned_cols=71  Identities=18%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC--CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ--SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi--~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ||||||+.+|+  ++++++++++||.+||++|++. |+  |+++|+|+|+|++|+|+.+| ++|||+++++|++.++
T Consensus         1 m~i~vk~~~g~--~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L-~~~~i~~~~~i~~~~~   74 (77)
T cd01805           1 MKITFKTLKQQ--TFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTL-EEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCH-HHcCCCCCCEEEEEEe
Confidence            99999999997  7889999999999999999999 98  99999999999999999999 9999999999998875

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.63  E-value=7.3e-16  Score=118.72  Aligned_cols=71  Identities=18%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      |+||||+++|.  ++++++++++||++||++|++. |+|++.|+|+|+|++|+|+.+| ++|||+++++|||.+|
T Consensus         1 i~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L-~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQ--THTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETL-SEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcH-HHCCCCCCCEEEEEeC
Confidence            89999999997  6788888899999999999999 9999999999999999999999 9999999999999876

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.63  E-value=7.2e-16  Score=122.88  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=69.5

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE--EeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF--TLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L--i~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      |+  ||||||+..|+  ++++++++++||++||.+|++. |+|+++|+|  +|+|+.|+|+.+| ++|||.+++||+|++
T Consensus         1 ~~--~~i~Vk~~~G~--~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL-~~~gi~~gs~l~l~~   75 (80)
T cd01792           1 MG--WDLKVKMLGGN--EFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPL-VSQGLGPGSTVLLVV   75 (80)
T ss_pred             Cc--eEEEEEeCCCC--EEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCH-HHcCCCCCCEEEEEE
Confidence            66  99999999997  6788999999999999999999 999999999  8999999999999 999999999999999


Q ss_pred             e
Q 017480           78 R   78 (371)
Q Consensus        78 r   78 (371)
                      +
T Consensus        76 ~   76 (80)
T cd01792          76 Q   76 (80)
T ss_pred             E
Confidence            8

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.62  E-value=8.6e-16  Score=121.16  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=66.5

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +|+|+||+..|+  .+.+++++++||++||++|++. |+|+++|||+|+|+.|+|+.+| ++|||.+++||||-
T Consensus         1 ~~~i~vkt~~Gk--~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL-~~ygi~~~stv~l~   71 (73)
T cd01791           1 MIEVVCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISL-GDYEIHDGMNLELY   71 (73)
T ss_pred             CEEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCH-HHcCCCCCCEEEEE
Confidence            499999999997  7788999999999999999999 9999999999999999999999 99999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.61  E-value=2.4e-15  Score=121.99  Aligned_cols=77  Identities=12%  Similarity=0.191  Sum_probs=73.2

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..|||||++++|+  ++.+.|..++||..||..++++ |+|+++|+|+|+|++|+++.|+ .+|+|.++++|++.+||+|
T Consensus        10 ~~i~I~v~~~~g~--~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~-~~l~m~d~d~I~v~l~l~G   86 (87)
T cd01763          10 EHINLKVKGQDGN--EVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTP-DDLGMEDGDEIEVMLEQTG   86 (87)
T ss_pred             CeEEEEEECCCCC--EEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCH-HHcCCCCCCEEEEEEeccc
Confidence            4599999999997  6778888899999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        87 G   87 (87)
T cd01763          87 G   87 (87)
T ss_pred             C
Confidence            7

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.59  E-value=2e-15  Score=117.94  Aligned_cols=68  Identities=15%  Similarity=0.251  Sum_probs=64.3

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      |.||...|.  ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+
T Consensus         1 ~~vk~~~G~--~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l-~~~~i~~~~tv~~~~   69 (70)
T cd01794           1 LKVRLSTGK--DVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRL-QETKIQKDYVVQVIV   69 (70)
T ss_pred             CeEEcCCCC--EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCH-HHcCCCCCCEEEEEe
Confidence            468999997  7889999999999999999999 9999999999999999999999 999999999999976

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.59  E-value=2.9e-15  Score=116.50  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      |.|+||+..|+   .+|++++++||++||++|++. |+|+++|+|+|+|+.|+|+.+| ++|||++++||||++|
T Consensus         1 ~~i~vk~~~g~---~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL-~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK---EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTL-TQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC---EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcH-HHcCCCCCCEEEEEEC
Confidence            57999999996   378888899999999999999 9999999999999999999999 9999999999999986

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.58  E-value=3e-15  Score=118.21  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=65.2

Q ss_pred             CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480           12 PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus        12 ~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ++|+  +++|++++++||++||++|+.. |+|+++|+|+|+|+.|+|+.+| ++|+|.++++|+|.+|++||+
T Consensus         5 l~g~--~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL-~~~~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           5 LNGQ--MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSL-AYYNLANGTIIHLQLKERGGR   74 (76)
T ss_pred             cCCe--EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcH-HHcCCCCCCEEEEEEecCCCc
Confidence            4675  7889999999999999999999 9999999999999999999999 999999999999999999976

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.52  E-value=2e-14  Score=112.26  Aligned_cols=67  Identities=18%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             EEEEcC-CCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEE
Q 017480            7 IFIKSP-SNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         7 IFVk~~-~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~   76 (371)
                      |+||+. .|.  ++.|++++++||++||++|++. |+|+++|+|+|+|++|+|+ .+| ++|||.++++|+|.
T Consensus         1 l~v~~~~~g~--~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L-~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSET--TFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLL-ALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCC--EEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccH-HHcCCCCCCEEEEe
Confidence            579999 786  7889999999999999999999 9999999999999999987 678 99999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.1e-14  Score=109.93  Aligned_cols=69  Identities=12%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      |-|.||+++|+  .+.++++++|+|.+||++|++. ||||.||||+|.|++|.|+.|- .+|++..+|.|||+
T Consensus         1 m~iKvktLt~K--eIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA-~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTA-AHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccc--eEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccH-HHhhhccceeEeeC
Confidence            77999999998  7889999999999999999999 9999999999999999999999 99999999999974

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.49  E-value=5.1e-14  Score=107.97  Aligned_cols=68  Identities=25%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             EcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480           10 KSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus        10 k~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      |+.+|+  ++++++.+++||.+||.+|++. |+|+++|+|+|+|+.|+|+.+| ++|||.++++|+|.+|.|
T Consensus         1 k~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL-~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGK--TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTL-SDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSE--EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBT-GGGTTSTTEEEEEEESSE
T ss_pred             CCCCCc--EEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcH-HHcCCCCCCEEEEEEecC
Confidence            678886  7889999999999999999999 9999999999999999999999 999999999999999865

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.43  E-value=3.1e-13  Score=108.38  Aligned_cols=73  Identities=21%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C-C-CCCceEEEeCCeeCCCCCCcccCCC--CCCCCeEEEEe
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D-Q-SLSSLYFTLNGKILDESTPLFKNPQ--IAPLSTLYLRQ   77 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g-i-~~~~q~Li~~Gk~L~D~~tL~~~~~--I~~~sTL~L~l   77 (371)
                      .|.|+||++++...+++|++++++||.+||++|++. + . ++++|+|||.||.|.|+.+| ++|.  +..+.||||+.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL-~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKL-RDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhH-HHHhhcccCCceEEEEe
Confidence            378999999999777888889999999999999987 5 4 57999999999999999999 9996  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.40  E-value=5.1e-13  Score=102.82  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      |+|+||+. |.  ++++++++++||++||++|+.. |+|+++|+|+|+|++|+|+.+| .+|||.++++|+|.
T Consensus         1 i~i~vk~~-g~--~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L-~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GE--SHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETL-DMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CE--EEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcH-HHcCCCCCCEEEEe
Confidence            68999997 75  6788999999999999999999 9999999999999999999999 99999999999885

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>smart00213 UBQ Ubiquitin homologues

Probab=99.36  E-value=1.2e-12  Score=97.77  Aligned_cols=63  Identities=21%  Similarity=0.336  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLS   71 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s   71 (371)
                      |||+||+.+ .  ++.+++++++||++||++|+.. |+|++.|+|+|+|++|.|+.+| .+|||.+++
T Consensus         1 ~~i~vk~~~-~--~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL-~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-G--TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTL-ADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-c--eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCH-HHcCCcCCC
Confidence            899999998 4  6788999999999999999999 9999999999999999999999 999998874

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.26  E-value=9.2e-12  Score=125.78  Aligned_cols=71  Identities=14%  Similarity=0.213  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C---CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D---QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g---i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      |+|+||++.|+  ++.|+|++++||.+||.+|+.. |   +|+++|+|+|+|+.|+|+.+| .+|+|.++++|++.+.
T Consensus         1 MkItVKtl~g~--~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL-~dy~I~e~~~Ivvmv~   75 (378)
T TIGR00601         1 MTLTFKTLQQQ--KFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTV-REYKIKEKDFVVVMVS   75 (378)
T ss_pred             CEEEEEeCCCC--EEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcH-HHcCCCCCCEEEEEec
Confidence            89999999997  7889999999999999999999 8   999999999999999999999 9999999999887754

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.23  E-value=8.4e-12  Score=99.15  Aligned_cols=54  Identities=15%  Similarity=0.085  Sum_probs=49.1

Q ss_pred             cC-CCCCHHHHHHHHhcc-C--C-CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480           23 AN-QFETLNHLKRSLLSL-D--Q-SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus        23 v~-~~~TV~~lK~~i~~~-g--i-~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      |+ +++||.+||++|++. +  + ++++|+|+|+|+.|+|+.|| ++|||++++||||+.
T Consensus        16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL-~dygI~~gstlhLv~   74 (75)
T cd01815          16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTL-DFYGIQSGSTIHILR   74 (75)
T ss_pred             cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcH-HHcCCCCCCEEEEEe
Confidence            44 479999999999999 4  6 49999999999999999999 999999999999864

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.14  E-value=1.1e-10  Score=92.59  Aligned_cols=59  Identities=15%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC-CCCCcccCCCCC-CCCeEEEEe
Q 017480           17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD-ESTPLFKNPQIA-PLSTLYLRQ   77 (371)
Q Consensus        17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~-~~sTL~L~l   77 (371)
                      .++++++++++||++||++|++. |||+++|+| |+|++|. |+.+| ++|||. +|+||+|-+
T Consensus        13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL-~~ygi~~~g~~~~l~~   74 (75)
T cd01799          13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETL-YSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCH-HHcCCCCCCCEEEEEe
Confidence            47889999999999999999999 999999999 9999996 66899 999999 779999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.11  E-value=3.6e-10  Score=84.49  Aligned_cols=73  Identities=25%  Similarity=0.321  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ++|++++.|+  ++.+++.+..+|..+|.+|... |++.++|+|.+.|++|+|+.+| .+|+|...++++|..++++
T Consensus         1 ~~~~~~~~gk--~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l-~~~~i~~~~~~~l~~~~~~   74 (75)
T KOG0001|consen    1 QIFVKTLDGK--TITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTL-ADYNIQEGSTLHLVLSLRG   74 (75)
T ss_pred             CEEEEecCCC--EEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcH-HHhCCCCCCEEEEEEecCC
Confidence            5799999997  7889999999999999999999 9999999999999999999999 9999999999999999874

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.09  E-value=2.1e-10  Score=90.63  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe---CCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL---NGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~---~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      |-||- .|+  +++|++++++||++||++|++. |+|+++|.|+|   .|++|.|+.+| .+|+|.++++|.|.
T Consensus         3 i~vk~-~g~--~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L-~~~~i~~g~~i~lm   72 (74)
T cd01813           3 VIVKW-GGQ--EYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKI-SALKLKPNTKIMMM   72 (74)
T ss_pred             EEEEE-CCE--EEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCH-HHcCCCCCCEEEEE
Confidence            44554 443  6889999999999999999999 99999999996   99999999999 99999999998874

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.01  E-value=9.7e-10  Score=82.93  Aligned_cols=66  Identities=23%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             EEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            9 IKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         9 Vk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      ||..+|+  ++.+++++++||.+||.+|+.. |+|++.|+|+|+|++|+|+.+| .+|+|.++++|++..
T Consensus         2 v~~~~~~--~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l-~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGK--TFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTL-SDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCC--EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCH-HHCCCCCCCEEEEEE
Confidence            6777786  6778888899999999999999 9999999999999999999999 999999999998864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.99  E-value=5.9e-10  Score=94.67  Aligned_cols=75  Identities=15%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHh-----cc-CCC--CCceEEEeCCeeCCCCCCcccCCC------CCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLL-----SL-DQS--LSSLYFTLNGKILDESTPLFKNPQ------IAP   69 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~-----~~-gi~--~~~q~Li~~Gk~L~D~~tL~~~~~------I~~   69 (371)
                      ..-|-.|-.+|. -.=...+++++||++||++|+     .+ ++|  +++|+|||+||.|+|+.|| ++|+      +..
T Consensus         4 ~~e~kfrl~dg~-digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL-~d~~~p~g~~~~~   81 (113)
T cd01814           4 QIEIKFRLYDGS-DIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTV-GECRSPVGDIAGG   81 (113)
T ss_pred             cEEEEEEccCCC-ccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcH-HHhCCcccccCCC
Confidence            355777777773 011234667899999999999     55 566  9999999999999999999 9999      777


Q ss_pred             CCeEEEEeeec
Q 017480           70 LSTLYLRQRVF   80 (371)
Q Consensus        70 ~sTL~L~lrL~   80 (371)
                      .+|+||++|..
T Consensus        82 ~~TmHvvlr~~   92 (113)
T cd01814          82 VITMHVVVQPP   92 (113)
T ss_pred             ceEEEEEecCC
Confidence            89999999976

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.98  E-value=7.9e-10  Score=85.58  Aligned_cols=70  Identities=16%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC-CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL-SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~-~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      |+|+|++.+|+  .+.+.|.+++||..|.+.+... |+|+ ++++|+|+|++|+++.|+ .+++|.++++|++.+
T Consensus         1 I~i~v~~~~~~--~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~-~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGK--EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTP-EDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSE--EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCH-HHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCH-HHCCCCCCCEEEEEC
Confidence            89999999997  7778888899999999999999 9999 999999999999999999 999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.89  E-value=2.3e-09  Score=89.21  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=55.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC-CCCCcccCCCCCCCCeEEEEeee
Q 017480           18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD-ESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      ..+|+|++++||.+||.+|.+. ++++++|.|+|+|+.|+ |+.|| ++|||.++|.|.|.++.
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTL-ssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATL-GTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccH-HhcCCCCCCEEEEEecC
Confidence            3578899999999999999999 99999999999999996 56899 99999999999998754

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.71  E-value=1.8e-08  Score=103.58  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      +-|-||+.+.+   +.+.|..+.||.+||+.|... ++++++++|||+||.|.|+.|| ..|||+++.||||++..-
T Consensus        16 irV~Vkt~~dk---~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL-~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   16 IRVTVKTPKDK---YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTL-KQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eEEEEecCCcc---eeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhH-HHcCCCCCcEEEEEeccC
Confidence            56899999996   889999999999999999999 9999999999999999999999 999999999999999865

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.67  E-value=3.2e-08  Score=97.36  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C--CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D--QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g--i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      |.|+||++.+.  ++++++.+++||..+|..|+.. |  .|+++|-|||+||.|.|+.++ .+|+|....-|.+.+.=
T Consensus         1 m~lt~KtL~q~--~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv-~Eykv~E~~fiVvMlsK   75 (340)
T KOG0011|consen    1 MKLTVKTLKQQ--TFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTV-GEYKVKEKKFIVVMLSK   75 (340)
T ss_pred             CeeEeeeccCc--eeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcch-hhhccccCceEEEEEec
Confidence            89999999996  7899999999999999999999 8  999999999999999999999 99999999977666543

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.55  E-value=3.3e-07  Score=74.04  Aligned_cols=70  Identities=17%  Similarity=0.181  Sum_probs=57.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE-EeCCe-----eC-CCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF-TLNGK-----IL-DESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L-i~~Gk-----~L-~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +.|+|.+... ....+..++++.||++||++|+.. |+|++.|+| +|.|+     .| +|+.+| +.||+.++.+||++
T Consensus         2 v~v~i~~~~~-~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L-~~y~~~dg~~IhVv   79 (84)
T cd01789           2 VTVNITSSAD-SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALL-GSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEEeCCC-ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEe-eeccCCCCCEEEEE
Confidence            4577777443 234455588899999999999999 999999999 58999     57 567788 99999999999985

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PLN02560 enoyl-CoA reductase

Probab=98.45  E-value=4.3e-07  Score=89.87  Aligned_cols=70  Identities=21%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCeee-EEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEeC---C----eeCCCCCCcccCCCCCCCCeEE
Q 017480            5 TQIFIKSPSNSLTT-LTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTLN---G----KILDESTPLFKNPQIAPLSTLY   74 (371)
Q Consensus         5 MQIFVk~~~g~~~t-~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~~---G----k~L~D~~tL~~~~~I~~~sTL~   74 (371)
                      |+|.|++.+|+... .+|+++++.||++||.+|+.+ ++ ++++|||++.   |    +.|+|+.+| .++||.+++||+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL-~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSL-KDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCH-HhcCCCCCceEE
Confidence            89999999997211 278999999999999999999 75 8999999983   4    488999999 999999999876


Q ss_pred             E
Q 017480           75 L   75 (371)
Q Consensus        75 L   75 (371)
                      +
T Consensus        80 ~   80 (308)
T PLN02560         80 F   80 (308)
T ss_pred             E
Confidence            5

>smart00504 Ubox Modified RING finger domain

Probab=98.39  E-value=5.4e-07  Score=67.67  Aligned_cols=50  Identities=18%  Similarity=0.245  Sum_probs=43.5

Q ss_pred             eEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L  242 (371)
                      |+||||+..|..-    ++.+|||||+.+++.+.-  ...||+|+++++.+|+|++
T Consensus         2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~   53 (63)
T smart00504        2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN   53 (63)
T ss_pred             cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence            7899999999863    345999999999999873  5689999999999999885

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.31  E-value=1.6e-06  Score=73.85  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-------CCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-------APLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-------~~~sTL~L~   76 (371)
                      |.|-||-...   ||=+++.+++||-+||..|+.. ..|+++|+|+-.+..|+|+.|| ++||+       +.-.+|-|.
T Consensus         3 vFlmIrR~KT---TiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL-~d~g~t~~~akaq~pA~vgLa   78 (119)
T cd01788           3 VFLMIRRHKT---TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTL-GDCGFTSQTARPQAPATVGLA   78 (119)
T ss_pred             eEEEEEecce---EEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccH-HHcCccccccccCCCCeEEEE
Confidence            5555665554   6889999999999999999999 8999999999888889999999 99999       556777666


Q ss_pred             ee
Q 017480           77 QR   78 (371)
Q Consensus        77 lr   78 (371)
                      +|
T Consensus        79 ~r   80 (119)
T cd01788          79 FR   80 (119)
T ss_pred             Ee
Confidence            66

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=98.22  E-value=4.1e-06  Score=75.71  Aligned_cols=84  Identities=29%  Similarity=0.325  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCC--eeeEEEEcCCCCCHHHHHHHHhcc-CCCCCc-eEEEeC-CeeCC--CCCCcccCCCCC----CCCeE
Q 017480            5 TQIFIKSPSNS--LTTLTVGANQFETLNHLKRSLLSL-DQSLSS-LYFTLN-GKILD--ESTPLFKNPQIA----PLSTL   73 (371)
Q Consensus         5 MQIFVk~~~g~--~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~-q~Li~~-Gk~L~--D~~tL~~~~~I~----~~sTL   73 (371)
                      |||||++++|.  ..++.+.+..+.||++|+.+|.+. +++... ++|++. +++|.  ++..+ ..+.-.    ...+|
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~-s~l~~~~~~~~~~~l   79 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPL-SSLLSSSQDSDFITL   79 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccH-HhhccCcCCCCceEE
Confidence            79999999993  236778888899999999999999 887776 567664 56663  44444 222211    34579


Q ss_pred             EEEeeecCCCCCCccc
Q 017480           74 YLRQRVFGGGGDGGAT   89 (371)
Q Consensus        74 ~L~lrL~G~~~~~~si   89 (371)
                      +|.+||+||++.=||.
T Consensus        80 ~l~~rl~GGKGGFGs~   95 (162)
T PF13019_consen   80 RLSLRLRGGKGGFGSQ   95 (162)
T ss_pred             EEEEeccCCCccHHHH
Confidence            9999999999888886

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.15  E-value=5.3e-06  Score=66.95  Aligned_cols=71  Identities=20%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeC----C---eeC-CCCCCcccCCCCCCCCeEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLN----G---KIL-DESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~----G---k~L-~D~~tL~~~~~I~~~sTL~L   75 (371)
                      ..|+|.....+.+.....++.+.||++||.+|+.. |+|++.|+|.+-    |   ..| +|+.+| +.||+.++.+||+
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L-~~y~~~dg~~i~V   80 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATL-GSYGIKDGMRIHV   80 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBC-CHHT-STTEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEe-ecCCCCCCCEEEE
Confidence            35777777664345667777788999999999999 999999999876    1   224 467899 9999999999987


Q ss_pred             E
Q 017480           76 R   76 (371)
Q Consensus        76 ~   76 (371)
                      .
T Consensus        81 ~   81 (87)
T PF14560_consen   81 V   81 (87)
T ss_dssp             E
T ss_pred             E
Confidence            4

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.14  E-value=3.3e-06  Score=67.89  Aligned_cols=72  Identities=21%  Similarity=0.221  Sum_probs=43.9

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC---eeC--CCCCCcccCCCCCCCCeEE
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG---KIL--DESTPLFKNPQIAPLSTLY   74 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G---k~L--~D~~tL~~~~~I~~~sTL~   74 (371)
                      |...|-|=||+.+|   +..|++++++||++|+++|++. ++|.+.|.|+.+-   ..|  +++.+| +++||..|+.|+
T Consensus         1 ~~~~milRvrS~dG---~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl-~~lglkHGdmly   76 (80)
T PF11543_consen    1 MASSMILRVRSKDG---MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTL-SSLGLKHGDMLY   76 (80)
T ss_dssp             -----EEEEE-SSE---EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CC-CCT---TT-EEE
T ss_pred             CCccEEEEEECCCC---CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCH-HHcCCCCccEEE
Confidence            88999999999999   5789999999999999999999 9999999885432   234  467899 999999999887


Q ss_pred             EE
Q 017480           75 LR   76 (371)
Q Consensus        75 L~   76 (371)
                      |.
T Consensus        77 L~   78 (80)
T PF11543_consen   77 LK   78 (80)
T ss_dssp             --
T ss_pred             Ee
Confidence            74

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.2e-06  Score=93.18  Aligned_cols=68  Identities=15%  Similarity=0.291  Sum_probs=62.4

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      +.||+++.++++++|..  .+||.++|.+|.+. .|+.+-|||||+|+-|.|+.++ ++|+| .|-+|||+=|
T Consensus         5 v~vktld~r~~t~~ig~--q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~v-q~~~v-dgk~~hlver   73 (1143)
T KOG4248|consen    5 VLVKTLDSRTRTFIIGA--QMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKV-QEYNV-DGKVIHLVER   73 (1143)
T ss_pred             eeeeecccceeEEEech--HHHHHHHHHHHHHhcccccccceeeecceeeccchhh-hhccC-CCeEEEeecc
Confidence            89999999866655555  77999999999999 9999999999999999999999 99999 8999999977

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.08  E-value=1.9e-05  Score=67.35  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---C-----CCCCceEEEeCCeeCCCCCCcccCCCCCCCC------e
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---D-----QSLSSLYFTLNGKILDESTPLFKNPQIAPLS------T   72 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---g-----i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s------T   72 (371)
                      |-.+-.+|. -+..+..++++||++||++|...   +     ..+++.||||.||-|+|+.+| .++.++.+.      +
T Consensus         5 lkf~l~~G~-d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL-~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    5 LKFRLADGK-DIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTL-SDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEETTS--EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBT-GGGT--TTSETT--EE
T ss_pred             EEEEEeCCC-cccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcH-HHhCCCCCCCCCCCEE
Confidence            444555785 13455666689999999999855   1     267889999999999999999 999988766      5


Q ss_pred             EEEEeeec
Q 017480           73 LYLRQRVF   80 (371)
Q Consensus        73 L~L~lrL~   80 (371)
                      +||++|-.
T Consensus        83 mHlvvrp~   90 (111)
T PF13881_consen   83 MHLVVRPN   90 (111)
T ss_dssp             EEEEE-SS
T ss_pred             EEEEecCC
Confidence            78887755

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.03  E-value=1.1e-05  Score=63.85  Aligned_cols=68  Identities=21%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             EEEEEcCC-CCeeeEEEEcCCCCCHHHHHHHHhcc-C-CCCCceEEE--eCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            6 QIFIKSPS-NSLTTLTVGANQFETLNHLKRSLLSL-D-QSLSSLYFT--LNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         6 QIFVk~~~-g~~~t~~l~v~~~~TV~~lK~~i~~~-g-i~~~~q~Li--~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      +|+++.-+ -.+..+.++ +++.||.+||..|... + ++++.|||+  +.|+.|.|+.+| .+|||.+++||++
T Consensus         2 ~i~~~~~~~k~~~~~~~~-~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL-~~~gv~~g~~lyv   74 (77)
T cd01801           2 EILDAKRSDKPIGKLKVS-SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTL-VDLGVGAGATLYV   74 (77)
T ss_pred             eeeccccCcCceeecccC-CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccH-hhcCCCCCCEEEE
Confidence            45666555 332223343 4678999999999988 5 689999995  899999999999 9999999999876

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.99  E-value=2.8e-05  Score=54.40  Aligned_cols=59  Identities=24%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480           18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      ...+.+.+..||.+|+.+|..+ |++++.|.|.++|..+.+...+ .++++..+++|++..
T Consensus         9 ~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~   68 (69)
T cd00196           9 TVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTL-EDYGLQDGDELVLVP   68 (69)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEe
Confidence            5677888889999999999999 9999999999999999988877 789999999998864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=2.6e-05  Score=76.89  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             eEEEEEcC-CCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSP-SNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~-~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      |-+||+-- +|..++++|+|+.+..|.+||+-++.+ |+|++|.++||+||.|.++.++ +.+.|..-|.+|++
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv-~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTV-QNCDLSQQSATHIM   73 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCcee-ecccccccchhhhh
Confidence            55666533 445568899999999999999999999 9999999999999999999999 98888777877765

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=1.6e-05  Score=72.66  Aligned_cols=56  Identities=21%  Similarity=0.466  Sum_probs=46.5

Q ss_pred             CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480          185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L  242 (371)
                      ..+.|-|||+...+.-+..  +--.|||||+..|+++.-  ...||+|+++.+..+++.|
T Consensus       128 ~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI  185 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRI  185 (187)
T ss_pred             cccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhheec
Confidence            3567999999988876544  336799999999999984  5799999999998888776

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=6.9e-06  Score=88.38  Aligned_cols=53  Identities=21%  Similarity=0.552  Sum_probs=45.4

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceEEec
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      +...||+|...+    +=++|..||||||+.|++..   +...||.|+.+|...||.+|.
T Consensus       642 ~~LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  642 ELLKCSVCNTRW----KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             hceeCCCccCch----hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            567999997433    45788999999999999986   578999999999999998873

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.64  E-value=4.9e-05  Score=57.46  Aligned_cols=33  Identities=27%  Similarity=0.596  Sum_probs=25.6

Q ss_pred             CccccCCCCCCCCCeeeCCCCceecHHHHHHHH
Q 017480          119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHAL  151 (371)
Q Consensus       119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~L  151 (371)
                      =..|.||++||.+||++-.-|+.|+|++|++||
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i   43 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYI   43 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC
T ss_pred             ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHH
Confidence            367999999999998886669999999999998

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00052  Score=57.32  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=68.6

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ..+|-|+++++.  ++.+-+--..++.-|....+.+ |++.+++||.|+|+++.+..|= .+.+...+..|++.....||
T Consensus        20 hi~LKV~gqd~~--~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP-~~L~mEd~D~Iev~~~q~gG   96 (99)
T KOG1769|consen   20 HINLKVKGQDGS--VVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTP-ADLEMEDGDEIEVVQEQTGG   96 (99)
T ss_pred             eEEEEEecCCCC--EEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCCh-hhhCCcCCcEEEEEeecccC
Confidence            478999999886  4555666677999999999999 9999999999999999988888 89999999999999999887


Q ss_pred             CC
Q 017480           83 GG   84 (371)
Q Consensus        83 ~~   84 (371)
                      ..
T Consensus        97 ~~   98 (99)
T KOG1769|consen   97 FG   98 (99)
T ss_pred             CC
Confidence            53

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.50  E-value=9.3e-05  Score=73.22  Aligned_cols=49  Identities=22%  Similarity=0.448  Sum_probs=41.8

Q ss_pred             eEcCCcccc--cCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCc
Q 017480          189 FQCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMD  238 (371)
Q Consensus       189 ~~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~D  238 (371)
                      +.||+|...  +|...+|.+. +|||+||..|+..+-   ...||+|++++...+
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            579999985  7777788877 999999999999963   458999999988766

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.44  E-value=0.00017  Score=56.67  Aligned_cols=52  Identities=23%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEe
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~L  242 (371)
                      ..|+||||+.-|..=    ++-+|||+|...++...-   ...||.|+.+++..|+|+-
T Consensus         3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn   57 (73)
T PF04564_consen    3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN   57 (73)
T ss_dssp             GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred             cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence            358999999999873    245899999999999873   5789999999999888763

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00504 Ubox Modified RING finger domain

Probab=97.32  E-value=0.00042  Score=51.82  Aligned_cols=53  Identities=23%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeee
Q 017480          120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVK  173 (371)
Q Consensus       120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lk  173 (371)
                      ..|+||++++.+||+. ..|+.|.+++|.+|+.....-|..+...+.+||+++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~   54 (63)
T smart00504        2 FLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL   54 (63)
T ss_pred             cCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence            3699999999999655 7899999999999998755556666666777777653

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.15  E-value=0.00024  Score=50.81  Aligned_cols=33  Identities=27%  Similarity=0.575  Sum_probs=19.5

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhhc
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS  224 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~  224 (371)
                      |||+.. |+.....-++-+|||||+++||+.+..
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~   33 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK   33 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence            999988 866444444445999999999999853

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.14  E-value=0.00049  Score=64.00  Aligned_cols=57  Identities=23%  Similarity=0.486  Sum_probs=46.6

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh------------------cCCCCCCCCCcCCCceEEecCCh
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK------------------SSSCLVCHEEFGEMDKILINGNE  246 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk------------------~~~CpvCg~~f~~~DiI~Lnp~~  246 (371)
                      .+.+.|||+...+..-    ++-+|||+|+..||.+.-                  ...||+|..++...++|+|-+..
T Consensus        16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg   90 (193)
T PLN03208         16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG   90 (193)
T ss_pred             CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence            4578999999887642    335899999999998752                  24799999999999999998754

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.11  E-value=0.00038  Score=49.43  Aligned_cols=42  Identities=31%  Similarity=0.736  Sum_probs=35.0

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCC
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHE  232 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~  232 (371)
                      .||+....+++..+ .+|-+|||+|.+++++.+.  ...||+|++
T Consensus         1 ~C~~C~~~~~~~~~-~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERR-PRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCC-eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            38999988854444 6677999999999999998  789999975

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=96.76  E-value=0.0014  Score=54.60  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe-CC-eeCCCCCCcccCCCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL-NG-KILDESTPLFKNPQIA   68 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~-~G-k~L~D~~tL~~~~~I~   68 (371)
                      |.|-||--..   +|-+++.++.||-+||..|+.. .-|++.|+|+. .- ..|+|+.+| +++|+.
T Consensus         3 ~f~~VrR~kt---tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL-~d~gft   65 (110)
T KOG4495|consen    3 VFLRVRRHKT---TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTL-GDCGFT   65 (110)
T ss_pred             eeeeeeecce---eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchh-hhcccc
Confidence            4455555444   6789999999999999999999 89999999987 33 456899999 999764

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=96.66  E-value=0.002  Score=50.64  Aligned_cols=52  Identities=19%  Similarity=0.285  Sum_probs=37.5

Q ss_pred             ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc-CCCCCccCccCCCCCceee
Q 017480          120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLS-KNLPKQYSYIKGLKDLINV  172 (371)
Q Consensus       120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~-k~~~~~~~HIksLKDlv~L  172 (371)
                      ..|.||++.+.+||+. ..|+.|++++|..||.. ....+..+...+..||++.
T Consensus         5 f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn   57 (73)
T PF04564_consen    5 FLCPITGELMRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN   57 (73)
T ss_dssp             GB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred             cCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence            5799999999999766 89999999999999998 3444555666666666653

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=96.65  E-value=0.0023  Score=46.39  Aligned_cols=43  Identities=21%  Similarity=0.580  Sum_probs=34.8

Q ss_pred             eEcCCcccccCCceeEEEEeccCcc-ccHHHHHHh--hcCCCCCCCCCcC
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEV--KSSSCLVCHEEFG  235 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkev--k~~~CpvCg~~f~  235 (371)
                      ..|+|....+..    +++.||||+ |...++.++  ....||+|..+++
T Consensus         3 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    3 EECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             SB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            469999887543    788899999 999999998  4689999999875

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=96.60  E-value=0.0018  Score=45.64  Aligned_cols=40  Identities=40%  Similarity=0.794  Sum_probs=32.4

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCC
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVC  230 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvC  230 (371)
                      .|||+..+|.....++.+. |||+|...++.+.-  ...||+|
T Consensus         2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~C   43 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVC   43 (44)
T ss_dssp             CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTT
T ss_pred             CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCcc
Confidence            3999999997766666554 99999999999973  5789998

...

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.57  E-value=0.0019  Score=48.80  Aligned_cols=43  Identities=33%  Similarity=0.597  Sum_probs=28.0

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCH  231 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg  231 (371)
                      ...+.||||...|..   =|--..|||||..+|+.++-    ...||+-|
T Consensus         9 ~~~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen    9 TISLKCPITLQPFED---PVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             B--SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             EeccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            456899999999975   34456899999999999984    46899943

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.48  E-value=0.001  Score=49.94  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=30.5

Q ss_pred             EEeccCccccHHHHHHhhcCCCCCCCCCcCCCce
Q 017480          206 AMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK  239 (371)
Q Consensus       206 ~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~Di  239 (371)
                      .+.||||+++..++.--.-+.||.||.+|+..|+
T Consensus        21 ~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~~~~   54 (55)
T PF14447_consen   21 TVLPCGHLICDNCFPGERYNGCPFCGTPFEFDDP   54 (55)
T ss_pred             ccccccceeeccccChhhccCCCCCCCcccCCCC
Confidence            3469999999999999999999999999988764

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.46  E-value=0.0022  Score=63.53  Aligned_cols=55  Identities=27%  Similarity=0.372  Sum_probs=42.2

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~DiI~  241 (371)
                      .+-|+|||.....+.-..-+. -.||||+|.+|+..+.     +.+||.|-..-.-+|++-
T Consensus       334 Hs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~r  393 (396)
T COG5109         334 HSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILR  393 (396)
T ss_pred             cceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhc
Confidence            467999999887765444444 4699999999999985     468999987666666553

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=96.30  E-value=0.0053  Score=42.24  Aligned_cols=37  Identities=30%  Similarity=0.684  Sum_probs=29.1

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCC
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVC  230 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvC  230 (371)
                      |||....+.+   -+++-+|||+|...++.+..  ...||+|
T Consensus         1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8899888876   45678999999999999874  5688887

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.003  Score=64.21  Aligned_cols=53  Identities=28%  Similarity=0.468  Sum_probs=38.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCce
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~Di  239 (371)
                      .+.|+|||.+..-+.-..=+-| .||||+|..|+..+.     +.+||.|-..-..+|.
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~  389 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDT  389 (394)
T ss_pred             cceeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhc
Confidence            5679999998876554333333 599999999999985     3689999765544444

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=96.22  E-value=0.0062  Score=47.33  Aligned_cols=58  Identities=24%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480           17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus        17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      +...+.++++.|+.+|=+....+ |+.+++..|.|++++|+-+.++ --.||+++++|+|
T Consensus         7 rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~-R~snL~n~akLeL   65 (65)
T PF11470_consen    7 RRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPF-RLSNLPNNAKLEL   65 (65)
T ss_dssp             -EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BH-HHH---SS-EEEE
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccce-eecCCCCCCEEeC
Confidence            46788999999999999998888 9999999999999999988877 8899999999986

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0043  Score=60.78  Aligned_cols=54  Identities=19%  Similarity=0.404  Sum_probs=43.4

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEec
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      .+.+.|-+|...+.+-    -.-||||+||..|+.+..  ...||+|-.+|...++|.|.
T Consensus       237 ~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr  292 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLR  292 (293)
T ss_pred             CCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeeec
Confidence            4567888887766431    125899999999999985  35799999999999999874

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.017  Score=59.92  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             EEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            7 IFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      +-||- .|+  .|.++ ++.++|+..+|++|+++ |++|+-|.+.+-|.+|.|+-.+ +..+|.++.||+|
T Consensus         6 v~VKW-~gk--~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~-~al~iKpn~~lmM   72 (473)
T KOG1872|consen    6 VIVKW-GGK--KYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDW-GALQIKPNETLMM   72 (473)
T ss_pred             Eeeee-cCc--cccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccc-cccccCCCCEEEe
Confidence            44554 444  46666 88899999999999999 9999999999999999988666 7889999999987

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=95.74  E-value=0.01  Score=40.20  Aligned_cols=41  Identities=29%  Similarity=0.674  Sum_probs=31.7

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCc
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEF  234 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f  234 (371)
                      |||....+.   ..+.+.+|||+|...++++..   ...||+|...+
T Consensus         2 C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           2 CPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCcCchhhh---CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            888888772   345566799999999999874   45799998753

>TIGR00599 rad18 DNA repair protein rad18

Probab=95.68  E-value=0.009  Score=61.36  Aligned_cols=48  Identities=19%  Similarity=0.452  Sum_probs=39.1

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM  237 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~  237 (371)
                      ...+.||||...|..-    ++-+|||+||..|+.+.-  ...||+|..++...
T Consensus        24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            4568999999888642    257999999999999864  34799999999765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02929 N1R/p28-like protein; Provisional

Probab=95.67  E-value=0.0083  Score=57.70  Aligned_cols=47  Identities=26%  Similarity=0.493  Sum_probs=38.4

Q ss_pred             eEcCCcccccCCc----eeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480          189 FQCPITGLEFNGK----YRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG  235 (371)
Q Consensus       189 ~~CPVT~~e~ng~----~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~  235 (371)
                      ..|||+..++...    .+|.++-+|||+|+..|+.+..  ...||+|-.+|.
T Consensus       175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            5799999987542    2467788999999999999874  468999998876

>PHA02926 zinc finger-like protein; Provisional

Probab=95.44  E-value=0.0082  Score=57.12  Aligned_cols=48  Identities=17%  Similarity=0.440  Sum_probs=39.4

Q ss_pred             eeEcCCccccc-----CCceeEEEEeccCccccHHHHHHhhcC--------CCCCCCCCcC
Q 017480          188 RFQCPITGLEF-----NGKYRFVAMRTCGHVLSTKALKEVKSS--------SCLVCHEEFG  235 (371)
Q Consensus       188 ~~~CPVT~~e~-----ng~~rfV~L~~CG~V~Se~alkevk~~--------~CpvCg~~f~  235 (371)
                      ...|+|+....     .+..+|-.|.+|||+|+-.|++.....        .||+|-..|.
T Consensus       170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            35799998764     234579999999999999999998743        3999999886

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=95.28  E-value=0.04  Score=45.98  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=38.0

Q ss_pred             eeeEEEEcC--CCCCHHHHHHHHhcc-C--CCCCceEEEeCCeeCCCCCCc
Q 017480           16 LTTLTVGAN--QFETLNHLKRSLLSL-D--QSLSSLYFTLNGKILDESTPL   61 (371)
Q Consensus        16 ~~t~~l~v~--~~~TV~~lK~~i~~~-g--i~~~~q~Li~~Gk~L~D~~tL   61 (371)
                      +.-+.|+++  .+.||..||..|.+. +  ..-.-+||||+|+.|.|++.|
T Consensus        11 ipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l   61 (97)
T PF10302_consen   11 IPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDL   61 (97)
T ss_pred             CCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchh
Confidence            345677777  789999999999998 4  455567889999999999877

They contain a characteristic GFDRL sequence motif.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.14  E-value=0.12  Score=40.77  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCc-eEEE--eCCeeCCCC--CCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSS-LYFT--LNGKILDES--TPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~-q~Li--~~Gk~L~D~--~tL~~~~~I~~~sTL~L~   76 (371)
                      ..|-||-.+|.  .+...-..++||.+|-+.|... ..+... +.|+  |--+.|.++  .+| .+.|+.+.++|+|.
T Consensus         7 ~~I~vRlpdG~--~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl-~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    7 VRIQVRLPDGS--RLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTL-EEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEEETTST--EEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBT-CCCTTSSCEEEEEE
T ss_pred             EEEEEECCCCC--EEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccH-HHhcCCCCeEEEEE
Confidence            57889999997  4555566688999999999888 444443 7885  667888644  599 99999999998763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=95.08  E-value=0.13  Score=40.35  Aligned_cols=66  Identities=23%  Similarity=0.321  Sum_probs=50.8

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      |+|.+-   |+    .+++.+..||++|   |.+.|++.....+..||.++..+.  |++.-+.+++-|. .+|..|||
T Consensus         3 m~i~~n---g~----~~e~~~~~tv~dL---L~~l~~~~~~vav~vNg~iVpr~~--~~~~~l~~gD~ie-vv~~v~GG   68 (68)
T COG2104           3 MTIQLN---GK----EVEIAEGTTVADL---LAQLGLNPEGVAVAVNGEIVPRSQ--WADTILKEGDRIE-VVRVVGGG   68 (68)
T ss_pred             EEEEEC---CE----EEEcCCCCcHHHH---HHHhCCCCceEEEEECCEEccchh--hhhccccCCCEEE-EEEeecCC
Confidence            676664   64    6778777899998   666788899999999999998654  3677788888786 56767665

>PRK07440 hypothetical protein; Provisional

Probab=95.05  E-value=0.15  Score=39.80  Aligned_cols=70  Identities=23%  Similarity=0.343  Sum_probs=51.8

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      |-..|+|.|   +|+    .+++.+..||.+|   |.+.++++....+-+||..+.-+.  |++.-|.+++.|++ ++..
T Consensus         1 ~~~~m~i~v---NG~----~~~~~~~~tl~~l---L~~l~~~~~~vav~~N~~iv~r~~--w~~~~L~~gD~IEI-v~~v   67 (70)
T PRK07440          1 MSNPITLQV---NGE----TRTCSSGTSLPDL---LQQLGFNPRLVAVEYNGEILHRQF--WEQTQVQPGDRLEI-VTIV   67 (70)
T ss_pred             CCCceEEEE---CCE----EEEcCCCCCHHHH---HHHcCCCCCeEEEEECCEEeCHHH--cCceecCCCCEEEE-EEEe
Confidence            667899998   554    4666677899988   455578888889999999987432  36677899999986 4555


Q ss_pred             CCC
Q 017480           81 GGG   83 (371)
Q Consensus        81 G~~   83 (371)
                      |||
T Consensus        68 ~GG   70 (70)
T PRK07440         68 GGG   70 (70)
T ss_pred             cCC
Confidence            554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.019  Score=58.78  Aligned_cols=69  Identities=20%  Similarity=0.388  Sum_probs=50.8

Q ss_pred             EcCCcccc--cCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecCC--hHHHHHHHHHHHHH
Q 017480          190 QCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILINGN--EEEISVLRERMEEE  259 (371)
Q Consensus       190 ~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp~--~ee~~~l~~rm~~~  259 (371)
                      .||++..+  |.|.|++|.++ |||.|+..|++..-    .+.||.|..+-...+|-++.--  -++.+.-++|+|++
T Consensus         6 tcpiclds~~~~g~hr~vsl~-cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rle~q   82 (463)
T KOG1645|consen    6 TCPICLDSYTTAGNHRIVSLQ-CGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRLEEQ   82 (463)
T ss_pred             cCceeeeeeeecCceEEeeec-ccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            69998766  78999999886 99999999999862    4799999998888877666531  13333444455443

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=94.91  E-value=0.1  Score=41.78  Aligned_cols=63  Identities=11%  Similarity=0.194  Sum_probs=50.3

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC----e-eCCCCCCcccCCCCCCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG----K-ILDESTPLFKNPQIAPLS   71 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G----k-~L~D~~tL~~~~~I~~~s   71 (371)
                      .|+-|+-...  ...++-|+|.++|-.||++|... +++- +|||.|.-    + .|.+..+| ++|||-..-
T Consensus         1 iqVtV~q~g~--~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sL-A~yGiFs~~   69 (80)
T cd01811           1 IQVTVEQTGY--SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSL-ADYGIFSKT   69 (80)
T ss_pred             CEEEeeecCC--CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccH-hhhcceecc
Confidence            4777876555  37789999999999999999998 8764 99999952    3 34788899 999997444

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.012  Score=45.89  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      |+.+..--|+  -+.+.+.+++||+++|.-|+++ |-.++..+|---+..+.|.-+| ++|.|..+..|+|
T Consensus         3 ev~~nDrLGK--KVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L-~dyeihdg~~lel   70 (73)
T KOG3493|consen    3 EVVLNDRLGK--KVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITL-SDYEIHDGMNLEL   70 (73)
T ss_pred             eehhhhhcCc--eEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccce-eeEEeccCccEEE
Confidence            4555555565  5688999999999999999999 9888999987677778899999 9999999988876

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.71  E-value=0.04  Score=37.83  Aligned_cols=37  Identities=32%  Similarity=0.708  Sum_probs=29.8

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCC
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVC  230 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvC  230 (371)
                      |||....+...   +.+.+|||.|...++.++-    ...||.|
T Consensus         1 C~iC~~~~~~~---~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP---VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE---EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC---CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            78888877653   3789999999999999874    3578877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=94.51  E-value=0.18  Score=38.30  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      |+|+|   +|+    .+++....|+.+||.++..     +.-.++|+|=|..++..|      .+++.|.+.
T Consensus         1 M~I~v---N~k----~~~~~~~~tl~~lr~~~k~-----~~DI~I~NGF~~~~d~~L------~e~D~v~~I   54 (57)
T PF14453_consen    1 MKIKV---NEK----EIETEENTTLFELRKESKP-----DADIVILNGFPTKEDIEL------KEGDEVFLI   54 (57)
T ss_pred             CEEEE---CCE----EEEcCCCcCHHHHHHhhCC-----CCCEEEEcCcccCCcccc------CCCCEEEEE
Confidence            88998   554    6777778899999998766     444789999999877554      777877664

>smart00184 RING Ring finger

Probab=94.19  E-value=0.042  Score=35.70  Aligned_cols=36  Identities=25%  Similarity=0.673  Sum_probs=26.2

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCC
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVC  230 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvC  230 (371)
                      |||.....    +...+.+|||+|...+++..-   ...||+|
T Consensus         1 C~iC~~~~----~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL----KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC----CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            66766552    234556899999999999873   3678877

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PRK06437 hypothetical protein; Provisional

Probab=93.71  E-value=0.43  Score=36.95  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480           19 LTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus        19 ~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ..+++++..||++|   |..+|+++....+..||..+..+.      -|.++..|.+ ++..|||
T Consensus        13 ~~~~i~~~~tv~dL---L~~Lgi~~~~vaV~vNg~iv~~~~------~L~dgD~Vei-v~~V~GG   67 (67)
T PRK06437         13 KTIEIDHELTVNDI---IKDLGLDEEEYVVIVNGSPVLEDH------NVKKEDDVLI-LEVFSGG   67 (67)
T ss_pred             eEEEcCCCCcHHHH---HHHcCCCCccEEEEECCEECCCce------EcCCCCEEEE-EecccCC
Confidence            36777778899998   555688889999999999998554      3578899975 5555655

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=93.68  E-value=0.43  Score=36.13  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      |+|.|   +|+    .+++.+..||.+|   |...+++.....+.++|..+.-+.  |.+.-|+++..|++ ++..|||
T Consensus         1 m~i~v---NG~----~~~~~~~~tl~~l---L~~l~~~~~~vav~vNg~iv~r~~--~~~~~l~~gD~vei-~~~vgGG   66 (66)
T PRK05659          1 MNIQL---NGE----PRELPDGESVAAL---LAREGLAGRRVAVEVNGEIVPRSQ--HASTALREGDVVEI-VHALGGG   66 (66)
T ss_pred             CEEEE---CCe----EEEcCCCCCHHHH---HHhcCCCCCeEEEEECCeEeCHHH--cCcccCCCCCEEEE-EEEecCC
Confidence            67777   564    4566667898888   555688888888999998776332  24556899999986 4555554

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.64  E-value=0.076  Score=53.40  Aligned_cols=59  Identities=14%  Similarity=0.356  Sum_probs=45.1

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecCChHHH
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILINGNEEEI  249 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp~~ee~  249 (371)
                      ||+|..+|.=.-+=++--+||.-+|.=|+..++   ...||.|-..|++++|-..--+.||+
T Consensus        17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ee~   78 (480)
T COG5175          17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSPEEL   78 (480)
T ss_pred             CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEecCHHHH
Confidence            999999986544556677899777766666665   57999999999999885555555776

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.62  E-value=0.043  Score=57.54  Aligned_cols=54  Identities=20%  Similarity=0.380  Sum_probs=43.4

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-------cCCCCCCCCCcCCCceEEecCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-------SSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-------~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      .+.||||..+..    |-.+-.||||||-.||=++-       -..||+|...+...|+-++--.
T Consensus       186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e  246 (513)
T KOG2164|consen  186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE  246 (513)
T ss_pred             CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence            678999987664    44555699999999998863       3589999999999998777653

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=93.40  E-value=0.73  Score=35.77  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      +|.|+|-+..   ....+++++..||.+|-++   +++++....+..||..+..+.      -|++++.|.+. +..|||
T Consensus         4 mm~v~vng~~---~~~~~~~~~~~tv~~ll~~---l~~~~~~v~v~vNg~iv~~~~------~l~~gD~Veii-~~V~GG   70 (70)
T PRK08364          4 MIRVKVIGRG---IEKEIEWRKGMKVADILRA---VGFNTESAIAKVNGKVALEDD------PVKDGDYVEVI-PVVSGG   70 (70)
T ss_pred             EEEEEEeccc---cceEEEcCCCCcHHHHHHH---cCCCCccEEEEECCEECCCCc------CcCCCCEEEEE-ccccCC
Confidence            4788885543   2456788888899998544   467777788889999986543      46888999764 444544

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=93.37  E-value=0.036  Score=43.06  Aligned_cols=52  Identities=25%  Similarity=0.450  Sum_probs=26.1

Q ss_pred             eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecC
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILING  244 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp  244 (371)
                      ..|+++...|..   -|.++.|.|+|+..++..--...||+|..|--..|+ .+|+
T Consensus         8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~-~~Nr   59 (65)
T PF14835_consen    8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDI-QINR   59 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS-----H
T ss_pred             cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHH-Hhhh
Confidence            358888776653   467899999999999999877889999999887775 3443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.20  E-value=0.095  Score=51.31  Aligned_cols=55  Identities=22%  Similarity=0.459  Sum_probs=39.5

Q ss_pred             CCCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcC
Q 017480          178 PGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFG  235 (371)
Q Consensus       178 ~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~  235 (371)
                      |....+..+..-.||+|+..-+.  .++ +-+|||++|+-|+..-.    +..||.||++-.
T Consensus       229 p~~sss~~t~~~~C~~Cg~~Pti--P~~-~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  229 PKFSSSTGTSDTECPVCGEPPTI--PHV-IGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCcccccccCCceeeccCCCCCC--Cee-eccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            44433334566789999986543  333 34799999999999864    479999998754

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=93.16  E-value=0.15  Score=40.60  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             cCCCCCHHHHHHHHhcc-C-CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480           23 ANQFETLNHLKRSLLSL-D-QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus        23 v~~~~TV~~lK~~i~~~-g-i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      |+++++|.+|++.|... . -....+.|.++|..|+|...|..--||.++++|.|+.
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve   57 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE   57 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence            56789999999999988 3 5678899999999999887772234588888888764

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=93.16  E-value=0.12  Score=40.94  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             EEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC---CCC---ceEEE-eCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            8 FIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ---SLS---SLYFT-LNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         8 FVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi---~~~---~q~Li-~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      -|....|+  .+.|.+....+|++|-..|.+. +.   ...   ...|. -.|.+|+++.+| .++||.+|++|.|
T Consensus         6 tv~~~~~~--~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL-~~~gV~dGd~L~L   78 (79)
T PF08817_consen    6 TVDAGNGR--QVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTL-ADAGVRDGDVLVL   78 (79)
T ss_dssp             EEE-TT----EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBC-GGGT--TT-EEEE
T ss_pred             EEEcCCCc--EEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcH-hHcCCCCCCEEEe
Confidence            34443343  6788888889999999998887 54   222   35665 689999999999 9999999998876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=93.06  E-value=0.5  Score=37.38  Aligned_cols=68  Identities=19%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE--EeCCeeCCC---CCCcccCCCCCCCCeEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF--TLNGKILDE---STPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L--i~~Gk~L~D---~~tL~~~~~I~~~sTL~L   75 (371)
                      -.|-||..+|.  .+...-..++||.+|.+.|... +.....+.|  .|--+.|.+   +.|| .+.|+.+.++|.|
T Consensus         5 ~~I~iRlPdG~--ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL-~e~gL~p~~~l~v   78 (80)
T smart00166        5 CRLQIRLPDGS--RLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTL-LELALLPSSTLVL   78 (80)
T ss_pred             EEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCH-HHCCCCCceEEEE
Confidence            46889999997  4555566688999999999655 665566777  466777753   4789 9999999998865

Present in FAF1 and Shp1p.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=93.05  E-value=0.16  Score=49.32  Aligned_cols=70  Identities=20%  Similarity=0.199  Sum_probs=52.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CCCCCce----EEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQSLSSL----YFTLNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~~~q----~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      |-|.+.+-++..+.-..++++.+||.+++..+...  .+.+.-+    ++.-.|+||-|+++| ++|+..++.||.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l-~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKL-QEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHH-HHhccCCCCEEEE
Confidence            55667666664444457888899999999888777  4555334    445689999999999 9999999877654

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=92.95  E-value=0.51  Score=36.14  Aligned_cols=65  Identities=17%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      |+|.|   +|.    ..++.+..||.+|   |...+++.....+.++|..+.-+.  |..+ |++++.|++ ++..|||
T Consensus         1 m~i~v---NG~----~~~~~~~~tl~~l---l~~l~~~~~~vav~~N~~iv~r~~--~~~~-L~~gD~ieI-v~~VgGG   65 (65)
T PRK05863          1 MIVVV---NEE----QVEVDEQTTVAAL---LDSLGFPEKGIAVAVDWSVLPRSD--WATK-LRDGARLEV-VTAVQGG   65 (65)
T ss_pred             CEEEE---CCE----EEEcCCCCcHHHH---HHHcCCCCCcEEEEECCcCcChhH--hhhh-cCCCCEEEE-EeeccCC
Confidence            67777   554    4555667798887   556688899999999999776443  2555 899999985 5555555

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=92.76  E-value=0.79  Score=34.52  Aligned_cols=65  Identities=18%  Similarity=0.223  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      |+|+|   +|.    .+++.+..||++|-+.+   +++ ....+-.+|..+..+.  |.+.-|.++++|++.-.+-||
T Consensus         1 m~i~v---Ng~----~~~~~~~~tl~~ll~~l---~~~-~~~~v~vN~~~v~~~~--~~~~~L~~gD~vei~~~v~GG   65 (65)
T PRK06944          1 MDIQL---NQQ----TLSLPDGATVADALAAY---GAR-PPFAVAVNGDFVARTQ--HAARALAAGDRLDLVQPVAGG   65 (65)
T ss_pred             CEEEE---CCE----EEECCCCCcHHHHHHhh---CCC-CCeEEEECCEEcCchh--cccccCCCCCEEEEEeeccCC
Confidence            67777   554    56677778999986654   443 4567789999876432  134558999999876655554

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.75  E-value=0.065  Score=51.40  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=38.8

Q ss_pred             eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecC
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILING  244 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp  244 (371)
                      .+|-.|+.--+ .. =.||-.|+||||+.|++......|+.|.++..   +|.|++
T Consensus         4 VhCn~C~~~~~-~~-~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir---~i~l~~   54 (233)
T KOG4739|consen    4 VHCNKCFRFPS-QD-PFFLTACRHVFCEPCLKASSPDVCPLCKKSIR---IIQLNR   54 (233)
T ss_pred             EEeccccccCC-CC-ceeeeechhhhhhhhcccCCccccccccceee---eeeccc
Confidence            46777776655 33 35678899999999999987779999999854   455553

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=92.60  E-value=0.84  Score=34.93  Aligned_cols=66  Identities=18%  Similarity=0.277  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      |+|.|   +|+    .+++.+..||.+|-.+   .+++.....+-.||..+.-+.  |..+-|.+++.|++.-.+-||
T Consensus         1 m~i~v---Ng~----~~~~~~~~tl~~ll~~---l~~~~~~vaVavN~~iv~r~~--w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053          1 MQILF---NDQ----PMQCAAGQTVHELLEQ---LNQLQPGAALAINQQIIPREQ--WAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             CEEEE---CCe----EEEcCCCCCHHHHHHH---cCCCCCcEEEEECCEEeChHH--cCccccCCCCEEEEEEEccCC
Confidence            77877   564    4566667799988554   355556788899999987332  144568999999865555443

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=92.22  E-value=0.19  Score=35.47  Aligned_cols=36  Identities=33%  Similarity=0.609  Sum_probs=24.8

Q ss_pred             cCCcccccCCceeEEEEeccCccccHHHHHHhhc------CCCCCC
Q 017480          191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS------SSCLVC  230 (371)
Q Consensus       191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~------~~CpvC  230 (371)
                      |||....|..   =|. -+|||+|...+|..+-.      ..||+|
T Consensus         1 CpiC~~~~~~---Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8888888865   233 38999999999999842      368877

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.21  E-value=0.16  Score=48.56  Aligned_cols=58  Identities=26%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCceEEecCCh
Q 017480          185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDKILINGNE  246 (371)
Q Consensus       185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~DiI~Lnp~~  246 (371)
                      ..+.|-|-|+...--+    -++-.|||.|++-||-+.-     +..||||-...+.+-+|+|.+..
T Consensus        44 ~~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG  106 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRG  106 (230)
T ss_pred             CCCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccC
Confidence            3578999999764433    3456799999999999873     56899999999999999999743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=91.97  E-value=0.12  Score=53.49  Aligned_cols=55  Identities=22%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             cccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeee
Q 017480          121 NCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLS  175 (371)
Q Consensus       121 ~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt  175 (371)
                      .|+||++-=+.|||+---|++|.|-=|-+||.+....|..+...++.|||+++--
T Consensus         2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~   56 (506)
T KOG0289|consen    2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVP   56 (506)
T ss_pred             eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccc
Confidence            5999999999999999999999999999999999889999999999999999864

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.93  E-value=0.086  Score=51.30  Aligned_cols=53  Identities=17%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-hh---cCCCCCCCCCcCCCceEEe
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-VK---SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-vk---~~~CpvCg~~f~~~DiI~L  242 (371)
                      .+.|.|+++..++..    -.-.+|||||+..||-. +.   ...||.|-......+||.|
T Consensus       213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil  269 (271)
T COG5574         213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL  269 (271)
T ss_pred             ccccceeeeecccCC----cccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence            457889999887763    23368999999999998 32   3469999988777777765

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=91.57  E-value=1.1  Score=34.54  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=46.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCC-CCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQF-ETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~-~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      |+|.|   +|+    ..++... .||.+|   |...++++....+-++|..+.-+.  |..+-|++++.|++ ++..|||
T Consensus         1 m~I~v---NG~----~~~~~~~~~tv~~l---L~~l~~~~~~vav~vN~~iv~r~~--w~~~~L~~gD~iEI-v~~VgGG   67 (67)
T PRK07696          1 MNLKI---NGN----QIEVPESVKTVAEL---LTHLELDNKIVVVERNKDILQKDD--HTDTSVFDGDQIEI-VTFVGGG   67 (67)
T ss_pred             CEEEE---CCE----EEEcCCCcccHHHH---HHHcCCCCCeEEEEECCEEeCHHH--cCceecCCCCEEEE-EEEecCC
Confidence            67777   554    3445444 578877   555678888888999999997543  36677999999985 5555555

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=91.55  E-value=0.4  Score=44.17  Aligned_cols=55  Identities=29%  Similarity=0.502  Sum_probs=40.6

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHHHhh
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKV  263 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~  263 (371)
                      ...|+||-++..++               ...|+.  ....||+||.+..+.|      +.+.++.|+++++.....-
T Consensus       115 ~~~Y~Cp~C~~ryt---------------f~eA~~--~~F~Cp~Cg~~L~~~d------n~~~~~~l~~~I~~l~~~~  169 (178)
T PRK06266        115 NMFFFCPNCHIRFT---------------FDEAME--YGFRCPQCGEMLEEYD------NSELIKELKEQIKELEEEL  169 (178)
T ss_pred             CCEEECCCCCcEEe---------------HHHHhh--cCCcCCCCCCCCeecc------cHHHHHHHHHHHHHHHHHh
Confidence            46799999886654               134554  3689999999988753      4677899999998776443

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.45  E-value=0.24  Score=48.88  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=37.9

Q ss_pred             EcCCcccc--cCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCce
Q 017480          190 QCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       190 ~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~Di  239 (371)
                      .||++...  +|... +.++.+|||-++++|+..+.   +..||.|++..-...+
T Consensus         2 ~Cp~CKt~~Y~np~l-k~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDL-KLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccc-eeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            49998765  55544 45566999999999999985   5799999998765543

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=91.19  E-value=0.83  Score=34.69  Aligned_cols=58  Identities=21%  Similarity=0.242  Sum_probs=42.5

Q ss_pred             EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .+++.+..||.+|.+++   +++.+...+..+|+.+..+.  |.++-|.++++|.+.-.+-||
T Consensus         8 ~~~~~~~~tv~~ll~~l---~~~~~~i~V~vNg~~v~~~~--~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           8 PREVEEGATLAELLEEL---GLDPRGVAVALNGEIVPRSE--WASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             EEEcCCCCCHHHHHHHc---CCCCCcEEEEECCEEcCHHH--cCceecCCCCEEEEEEeccCC
Confidence            56677778999986544   56778888999999987542  245668999999876555544

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=90.51  E-value=1.4  Score=35.21  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C-CCCCceEEE--eCCeeCC-CCCCcccCCCCCCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D-QSLSSLYFT--LNGKILD-ESTPLFKNPQIAPLS   71 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g-i~~~~q~Li--~~Gk~L~-D~~tL~~~~~I~~~s   71 (371)
                      -.|-||..+|.  .++.....++||.+|.+.|... + -....+.|.  |=.+.|. ++.|| .+.||.+.+
T Consensus         5 t~iqiRlpdG~--r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl-~eagL~~s~   73 (79)
T cd01770           5 TSIQIRLADGK--RLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTL-KEANLLNAV   73 (79)
T ss_pred             eEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcH-HHCCCcCcE
Confidence            46889999997  4555666788999999999876 3 233567775  6688885 47899 999998644

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=90.35  E-value=1.5  Score=35.64  Aligned_cols=67  Identities=15%  Similarity=0.304  Sum_probs=48.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      .|+|.|   +|+    ..++++..||.+|   |...++++....+-+||..+.-+.  |..+-|.+++.|++. +..|||
T Consensus        18 ~m~I~V---NG~----~~~~~~~~tl~~L---L~~l~~~~~~vAVevNg~iVpr~~--w~~t~L~egD~IEIv-~~VgGG   84 (84)
T PRK06083         18 LITISI---NDQ----SIQVDISSSLAQI---IAQLSLPELGCVFAINNQVVPRSE--WQSTVLSSGDAISLF-QAIAGG   84 (84)
T ss_pred             eEEEEE---CCe----EEEcCCCCcHHHH---HHHcCCCCceEEEEECCEEeCHHH--cCcccCCCCCEEEEE-EEecCC
Confidence            477877   564    4556667798888   444578877788899999986432  366779999999864 555554

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=90.28  E-value=0.39  Score=43.31  Aligned_cols=80  Identities=25%  Similarity=0.343  Sum_probs=50.4

Q ss_pred             cHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHh
Q 017480          143 NKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV  222 (371)
Q Consensus       143 nKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev  222 (371)
                      |.+.|+..|..+..    .-+..|++-    +...      .+...|+||-++..++               -..|+.  
T Consensus        78 ~~~~i~d~Ik~~~~----~~~~~lk~~----l~~e------~~~~~Y~Cp~c~~r~t---------------f~eA~~--  126 (158)
T TIGR00373        78 NYEKALDVLKRKLE----ETAKKLREK----LEFE------TNNMFFICPNMCVRFT---------------FNEAME--  126 (158)
T ss_pred             CHHHHHHHHHHHHH----HHHHHHHHH----Hhhc------cCCCeEECCCCCcEee---------------HHHHHH--
Confidence            77888888776421    112222222    2111      1356799999886654               255665  


Q ss_pred             hcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHH
Q 017480          223 KSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEE  259 (371)
Q Consensus       223 k~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~  259 (371)
                      ....||+||.+....|      +++.++.|+++++..
T Consensus       127 ~~F~Cp~Cg~~L~~~d------n~~~i~~l~~~i~~l  157 (158)
T TIGR00373       127 LNFTCPRCGAMLDYLD------NSEAIEKLEEQIKFL  157 (158)
T ss_pred             cCCcCCCCCCEeeecc------CHHHHHHHHHHHHhh
Confidence            3789999999876554      367788898888653

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=90.22  E-value=1.8  Score=34.39  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=50.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE--EeCCeeCCC---CCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF--TLNGKILDE---STPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L--i~~Gk~L~D---~~tL~~~~~I~~~sTL~L~   76 (371)
                      -.|-||-.+|..  +.-.-..++||.+|.+.|... +.+ ..+.|  .|=-|.+.+   +.|| .+.||.+.++|.|.
T Consensus         5 ~~i~iRlp~G~~--~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL-~elgL~Psa~L~v~   78 (79)
T cd01772           5 TRIQIRLLDGTT--LKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPL-QELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEEECCCCCE--EEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCH-HHCCCCCceEEEEe
Confidence            468899999974  444455578999999999977 332 45666  466777853   5799 99999999988763

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=89.77  E-value=2.4  Score=34.41  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCC--eeCC--------CCCCcccCCCCCCCCeE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNG--KILD--------ESTPLFKNPQIAPLSTL   73 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~G--k~L~--------D~~tL~~~~~I~~~sTL   73 (371)
                      ...|-||-.+|......  -..++||++|-+-|...+..++.+.|+.+=  +.++        .+.|| .+.||.+..+|
T Consensus         4 ~~~I~iRlp~G~Rl~rr--F~~~~tl~~l~~fv~~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL-~eaGL~~s~~L   80 (85)
T cd01774           4 TVKIVFKLPNGTRVERR--FLFTQSLRVIHDFLFSLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTL-LEAGLSNSEVL   80 (85)
T ss_pred             eEEEEEECCCCCEEEEE--eCCCCcHHHHHHHHHhCCCCCCcEEEecCCCCccccccccccCcCCCCH-HHcCCCCccEE
Confidence            35788999999733334  444679999999998766666889998765  6775        36799 99999988877


Q ss_pred             EEE
Q 017480           74 YLR   76 (371)
Q Consensus        74 ~L~   76 (371)
                      .+.
T Consensus        81 ~V~   83 (85)
T cd01774          81 FVQ   83 (85)
T ss_pred             EEe
Confidence            553

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=89.66  E-value=1.9  Score=32.64  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      |+|.|   +|+    .++++ ..||.+|...+   ++++.-..+-.||..+.-+.  |.+.-|.+++.|.+.-.+-||
T Consensus         1 m~i~~---Ng~----~~~~~-~~tl~~Ll~~l---~~~~~~vavavN~~iv~~~~--~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          1 MKLFV---NGE----TLQTE-ATTLALLLAEL---DYEGNWLATAVNGELVHKEA--RAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             CEEEE---CCe----EEEcC-cCcHHHHHHHc---CCCCCeEEEEECCEEcCHHH--cCccccCCCCEEEEEEeccCC
Confidence            77777   454    33443 35888886544   55555567889999887432  256678999999865555443

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.65  E-value=0.15  Score=46.77  Aligned_cols=42  Identities=29%  Similarity=0.532  Sum_probs=36.2

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc--CCCCCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS--SSCLVCH  231 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~--~~CpvCg  231 (371)
                      ...+.|||+...|..-    .+-+|||.|+..|+..+-.  ..||+|.
T Consensus        11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            4578999999999754    6779999999999999875  7899998

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=89.64  E-value=2.2  Score=33.40  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeCCC---CCCcccCCCCCCCCeEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKILDE---STPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L~D---~~tL~~~~~I~~~sTL~L   75 (371)
                      -.|-||..+|.  .+...-..++||.+|.+-|...+.....+.|+  |-.+.|.+   +.|| .+.||.+ +++-+
T Consensus         3 t~i~iRlpdG~--~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL-~e~gL~~-s~~~~   74 (77)
T cd01767           3 TKIQIRLPDGK--RLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTL-QEAGLVN-EVVFQ   74 (77)
T ss_pred             EEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcH-HHcCCcc-ceEEE
Confidence            35789999997  34455566789999999998874335667775  44677754   7899 9999995 44433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=89.48  E-value=0.35  Score=47.03  Aligned_cols=67  Identities=21%  Similarity=0.495  Sum_probs=51.7

Q ss_pred             CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCCccccc
Q 017480          119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF  198 (371)
Q Consensus       119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~  198 (371)
                      =..|.+|..|...||++-.-|++|++++|.++|-.+                                ....|||.|-+ 
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~--------------------------------~~i~CPv~gC~-  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE--------------------------------ITIRCPVLGCE-  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC--------------------------------ceeecccccCC-
Confidence            357999999999999999999999999999997552                                24579999987 


Q ss_pred             CCceeEEEEeccCccccH-HHHHHhh
Q 017480          199 NGKYRFVAMRTCGHVLST-KALKEVK  223 (371)
Q Consensus       199 ng~~rfV~L~~CG~V~Se-~alkevk  223 (371)
                      +     ++.-.|||+.-. .+-+.++
T Consensus       223 ~-----~~~~~~~~l~~d~el~~kIr  243 (262)
T KOG2979|consen  223 N-----PYYIQPGHLDEDKELQQKIR  243 (262)
T ss_pred             c-----cccccccccCchHHHHHHHH
Confidence            2     333458998876 3444444

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=89.37  E-value=1.5  Score=34.05  Aligned_cols=67  Identities=15%  Similarity=0.047  Sum_probs=48.2

Q ss_pred             EEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEe------CCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            9 IKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTL------NGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         9 Vk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~------~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      |+.++|.  ..+++++++.|+.+|=.+|... || ..+-|-|.|      ...+|+.+.+| .........+..|.+|
T Consensus         1 V~llD~~--~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l-~~q~~~~~~~~~l~fr   75 (80)
T PF09379_consen    1 VRLLDGT--TKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKL-KKQLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEESSEE--EEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBG-GGSTBTSSSSEEEEEE
T ss_pred             CCCcCCC--cEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccH-HHHcCCCCCCEEEEEE
Confidence            5667885  5677777788999999999999 85 667778888      24678888899 7776663344444444

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=89.13  E-value=2.6  Score=34.24  Aligned_cols=71  Identities=15%  Similarity=0.291  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC---CCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL---DESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L---~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      -+|-||-++|.....++.+  ++||..|-..|...|.+++.+.|+  |==|.+   +.+.|| .+.|+.+-.||.|.-|
T Consensus         6 t~i~vRlP~G~r~~rrF~~--~~~L~~v~~fv~~~g~~~~~f~L~t~FPRr~~~~~d~~~TL-~e~GL~P~~~LfVq~r   81 (82)
T cd01773           6 ARLMLRYPDGKREQIALPE--QAKLLALVRHVQSKGYPNERFELLTNFPRRKLSHLDYDITL-QEAGLCPQETVFVQER   81 (82)
T ss_pred             eEEEEECCCCCEEEEEeCC--CCcHHHHHHHHHhcCCCCCCEEEecCCCCcccCCcccCCCH-HHcCCCCCcEEEEecC
Confidence            4799999999854455555  679999999999888788888875  333444   335799 9999999999987544

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=88.92  E-value=1.5  Score=33.85  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=45.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcc-CC----CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           18 TLTVGANQFETLNHLKRSLLSL-DQ----SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~-gi----~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ...+++++..||.+|.++|... +-    ......+..||+....+.      -|.+++.|.+..++-||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~------~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDT------PLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCc------ccCCCCEEEEeCCCCCC
Confidence            4677887788999999998875 21    234667788999987543      46888999988888776

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.74  E-value=0.77  Score=43.55  Aligned_cols=62  Identities=21%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480           18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      .+-+.+...+||.++|.++.+. |+.+..|+..|+|+.|-|.+.| ..+.|+.+.--.|.++++
T Consensus       158 d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~L-eEc~iekg~rYvlqviVl  220 (231)
T KOG0013|consen  158 DFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDL-EECKIEKGQRYVLQVIVL  220 (231)
T ss_pred             heeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccc-eeeeecCCCEEEEEEEec
Confidence            3456777789999999999999 9988899999999999999999 999999998666665543

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.41  E-value=0.25  Score=50.82  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=37.0

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh----------hcCCCCCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV----------KSSSCLVCH  231 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev----------k~~~CpvCg  231 (371)
                      ..-|.|-|+-.+..|.+.|+++ ||+|||+..|++.-          +...||.++
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~l-pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFL-PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             hhcccceeeehhhcCcceeeec-ccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            4569999999999998888766 89999999999973          245787754

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=88.20  E-value=2  Score=32.50  Aligned_cols=58  Identities=22%  Similarity=0.229  Sum_probs=41.1

Q ss_pred             EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .++..+..||.+|...   .++++....+..||+.+..+.  |.++-|.+++.|.+...+-||
T Consensus         7 ~~~~~~~~tv~~ll~~---l~~~~~~v~v~vN~~iv~~~~--~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         7 PVEVEDGLTLAALLES---LGLDPRRVAVAVNGEIVPRSE--WDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             EEEcCCCCcHHHHHHH---cCCCCCeEEEEECCEEcCHHH--cCceecCCCCEEEEEEeccCC
Confidence            5666677799988554   366778888899999986432  145678999999865554443

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=87.30  E-value=0.76  Score=38.20  Aligned_cols=76  Identities=16%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .+-|-|=.++|.  ++-+.+--+.|...|-.-...+ |-..+++|+.|+|+.++-+.|- ++.+...+..|+.+.--.||
T Consensus        24 hinLkvv~qd~t--elfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP-~dldmEdnd~iEav~eQvGG  100 (103)
T COG5227          24 HINLKVVDQDGT--ELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTP-GDLDMEDNDEIEAVTEQVGG  100 (103)
T ss_pred             ccceEEecCCCC--EEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCCh-hhcCCccchHHHHHHHHhcC
Confidence            355677778886  5556666677999987766666 8899999999999999999998 99999998888766555554

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=87.26  E-value=3.7  Score=32.89  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=54.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeCC---CCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKILD---ESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L~---D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      -+|-||-.+|.  .+.-.-..++|+++|-.-|...|.+...+.|+  |==+.+.   .+.|| .+.||.+..+|.+.-|
T Consensus         5 ~~i~iRlP~G~--r~~rrF~~t~~L~~l~~fv~~~~~~~~~f~L~t~fPRk~~~~~d~~~TL-~e~gL~p~~~L~Veer   80 (80)
T cd01771           5 SKLRVRTPSGD--FLERRFLGDTPLQVLLNFVASKGYPIDEYKLLSSWPRRDLTQLDPNFTL-LELKLYPQETLILEER   80 (80)
T ss_pred             EEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCCCCCcCCCCCCcH-HHcCCCCCcEEEEEcC
Confidence            57889999997  33444555779999999998888777788884  4455563   35799 9999999998877543

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=86.82  E-value=2  Score=35.34  Aligned_cols=58  Identities=22%  Similarity=0.181  Sum_probs=42.0

Q ss_pred             EEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480           20 TVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus        20 ~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      .+++  .++++.||.-|+.+ ++..+.--+.+...+|+++.+| -+-+|+-..++.+.+.+.
T Consensus         8 ~mDI--~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L-~dQcVqgeGlVQlnvQi~   66 (88)
T PF11620_consen    8 HMDI--REPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSL-VDQCVQGEGLVQLNVQIK   66 (88)
T ss_dssp             EEES--SSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBT-TTSS----SEEEEEEEEE
T ss_pred             EEec--CCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccH-HHhhccccCEEEEEEEEE
Confidence            4566  55999999999999 9888888888899999999999 888899999999999987

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=85.84  E-value=3.3  Score=41.81  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      |||.|   +|+    .+++.+..||.+|   |.+++++.....+.+||..+.-+.  |.++-|++++.|++.-. .|||
T Consensus         1 M~I~V---NGk----~~el~e~~TL~dL---L~~L~i~~~~VAVeVNgeIVpr~~--w~~t~LkeGD~IEII~~-VgGG   66 (326)
T PRK11840          1 MRIRL---NGE----PRQVPAGLTIAAL---LAELGLAPKKVAVERNLEIVPRSE--YGQVALEEGDELEIVHF-VGGG   66 (326)
T ss_pred             CEEEE---CCE----EEecCCCCcHHHH---HHHcCCCCCeEEEEECCEECCHHH--cCccccCCCCEEEEEEE-ecCC
Confidence            77777   554    4566677898888   555688889999999999997433  36678999999986554 4443

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.61  E-value=0.97  Score=35.49  Aligned_cols=40  Identities=18%  Similarity=0.497  Sum_probs=30.2

Q ss_pred             cCCcccccC---------CceeEEEEeccCccccHHHHHHhh--cCCCCCC
Q 017480          191 CPITGLEFN---------GKYRFVAMRTCGHVLSTKALKEVK--SSSCLVC  230 (371)
Q Consensus       191 CPVT~~e~n---------g~~rfV~L~~CG~V~Se~alkevk--~~~CpvC  230 (371)
                      |+|+...|.         +....+++-+|||+|-..+|.+.-  ...||+|
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~C   72 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLC   72 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCC
Confidence            999998882         223456677899999999999863  4699998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=84.99  E-value=0.46  Score=38.72  Aligned_cols=29  Identities=24%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHH
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALK  220 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alk  220 (371)
                      .|++|++.+++  ..+++-||||||-..|++
T Consensus        80 ~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   80 KCSVCGKPLGN--SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence            59999999987  456677999999887764

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=84.62  E-value=0.51  Score=47.55  Aligned_cols=58  Identities=24%  Similarity=0.291  Sum_probs=46.9

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CC-CCCceEEEeCCeeCCCCCCc
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQ-SLSSLYFTLNGKILDESTPL   61 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi-~~~~q~Li~~Gk~L~D~~tL   61 (371)
                      ..-+|||..+-+-+.++|..+-.-||++||..+...  +- -..+|||+|.||.|.|...|
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl   69 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCL   69 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhH
Confidence            456899998887677777777788999999988876  32 23589999999999998766

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=83.86  E-value=0.87  Score=30.47  Aligned_cols=11  Identities=27%  Similarity=0.543  Sum_probs=8.8

Q ss_pred             hcCCCCCCCCC
Q 017480          223 KSSSCLVCHEE  233 (371)
Q Consensus       223 k~~~CpvCg~~  233 (371)
                      ....||+||.+
T Consensus        16 ~~~~CP~Cg~~   26 (33)
T cd00350          16 APWVCPVCGAP   26 (33)
T ss_pred             CCCcCcCCCCc
Confidence            56789999875

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=83.18  E-value=5.3  Score=31.33  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             eEEEEcCCC-CCHHHHHHHHhcc-C-CC--CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           18 TLTVGANQF-ETLNHLKRSLLSL-D-QS--LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        18 t~~l~v~~~-~TV~~lK~~i~~~-g-i~--~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ...+++.+. .||.+|.+.|.+. + +-  ....++..||+...++..      |+++++|.+..++-||
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~------l~dgDevai~PpvsGG   80 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDAL------LNEGDEVAFIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcC------cCCCCEEEEeCCCCCC
Confidence            346777765 8999999999887 3 21  133567889998886543      5888999988888775

The C-terminal Gly-Gly of this model is critical to function.

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=82.71  E-value=0.39  Score=47.84  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=0.0

Q ss_pred             EEEEcCCCCeeeEEEEcC-C--CCCHHHHHHHHhc----------c-CCCCCceE-----EEeCCeeCCCCCCcccCCCC
Q 017480            7 IFIKSPSNSLTTLTVGAN-Q--FETLNHLKRSLLS----------L-DQSLSSLY-----FTLNGKILDESTPLFKNPQI   67 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~-~--~~TV~~lK~~i~~----------~-gi~~~~q~-----Li~~Gk~L~D~~tL~~~~~I   67 (371)
                      |.+|++....-.+.|... +  +.||.+||..+++          . ++|.+-..     |.|+-+|+.|+.|| .+..=
T Consensus        81 V~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl-~e~l~  159 (309)
T PF12754_consen   81 VHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTL-AEVLA  159 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcH-HHHHh
Confidence            345555443223344333 2  6899999999999          7 78888888     99999999888888 55432


Q ss_pred             C-------CCCeEEEEeeecCCCCCC
Q 017480           68 A-------PLSTLYLRQRVFGGGGDG   86 (371)
Q Consensus        68 ~-------~~sTL~L~lrL~G~~~~~   86 (371)
                      .       .+.++++.+=++||...-
T Consensus       160 ~~~~~l~~~~~~vE~gvMVlGGa~~~  185 (309)
T PF12754_consen  160 DSESRLLSGGKEVEFGVMVLGGAAVI  185 (309)
T ss_dssp             --------------------------
T ss_pred             cccchhccCCceEEEEEEEECCcccC
Confidence            2       356777766666665543

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.20  E-value=1.9  Score=40.74  Aligned_cols=31  Identities=19%  Similarity=0.184  Sum_probs=22.0

Q ss_pred             CCCCCCCCCcCCCceEEecCChHHHHHHHHHHH
Q 017480          225 SSCLVCHEEFGEMDKILINGNEEEISVLRERME  257 (371)
Q Consensus       225 ~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~  257 (371)
                      .+||.||=.|.+.|.=.|.+  .+.+.+++.+.
T Consensus        49 ~vCP~CgyA~~~~~F~~l~~--~~~~~i~~~i~   79 (214)
T PF09986_consen   49 WVCPHCGYAAFEEDFEKLSP--EQKEKIKENIS   79 (214)
T ss_pred             EECCCCCCcccccccccCCH--HHHHHHHHHHH
Confidence            58999999999988765554  45555555543

>KOG2169 consensus Zn-finger transcription factor [Transcription]

Probab=82.14  E-value=0.96  Score=49.36  Aligned_cols=102  Identities=21%  Similarity=0.260  Sum_probs=64.7

Q ss_pred             CeeeCCCCceecHHHHHHHHHcCCC-CCccCccCCCCCceeeeeeecCCCCC--CCCCceeEcCCcccccCCceeEEEEe
Q 017480          132 PCVIDKLGTIFNKEALVHALLSKNL-PKQYSYIKGLKDLINVKLSRVPGAEE--NGDGIRFQCPITGLEFNGKYRFVAMR  208 (371)
Q Consensus       132 PIV~~~lG~LYnKeaILe~LL~k~~-~~~~~HIksLKDlv~Lklt~n~~~~~--~~~~~~~~CPVT~~e~ng~~rfV~L~  208 (371)
                      ++ ..+.++-|+.+.||+.+..+.. +..+.|   -+.++..+++..++.+.  ......+.||+++..|.=-.|-.   
T Consensus       251 sl-~~~~v~~~t~~~llq~~~~~~~~~~~~~~---s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~---  323 (636)
T KOG2169|consen  251 SL-SVYFVEGLTSKDLLQRLKQNGKINRNLSQ---SDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGH---  323 (636)
T ss_pred             ce-EEEEecccCHHHHHHHHhccCCccCchhH---hHHHhhcccccCCcccceeccceeEecCCcccceeecCCccc---
Confidence            53 4478999999999999997642 222222   14455667776665332  12356799999998875322222   


Q ss_pred             ccCccccHHHHHHh------hcCCCCCCCCCcCCCceE
Q 017480          209 TCGHVLSTKALKEV------KSSSCLVCHEEFGEMDKI  240 (371)
Q Consensus       209 ~CG~V~Se~alkev------k~~~CpvCg~~f~~~DiI  240 (371)
                      .|.|.=|-.|+--+      ..+.||||.+.+.-+|+|
T Consensus       324 ~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~  361 (636)
T KOG2169|consen  324 TCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI  361 (636)
T ss_pred             ccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence            46655555444433      368999999988766654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=82.10  E-value=1.7  Score=43.36  Aligned_cols=74  Identities=20%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      |.+.+---.|++..- .-|.++-+ ..+|-+||.-|...   |--.+-+.|+|+|-.=++-.   -+|-|-+-||-.++-
T Consensus         1 MssvI~YrFkSqkn~-SRI~FdGT-Gl~vfdlKrEII~q~Klg~g~DFdLl~yn~~tnEEyd---Dd~fviprstsVIV~   75 (427)
T COG5222           1 MSSVINYRFKSQKNF-SRISFDGT-GLPVFDLKREIINQRKLGSGKDFDLLFYNGETNEEYD---DDYFVIPRSTSVIVS   75 (427)
T ss_pred             CCceeEEEeeccCCc-ceeEeccC-CccHHHHHHHHHHhhhccCCccceEEEecCCcccccc---CceEEEeccceEEEE
Confidence            555555566777764 33455555 59999999886554   55567788899997654211   234455556544444


Q ss_pred             ee
Q 017480           78 RV   79 (371)
Q Consensus        78 rL   79 (371)
                      |.
T Consensus        76 R~   77 (427)
T COG5222          76 RI   77 (427)
T ss_pred             ec
Confidence            43

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=82.07  E-value=3.5  Score=32.50  Aligned_cols=60  Identities=18%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcc--CCCC--CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           17 TTLTVGANQFETLNHLKRSLLSL--DQSL--SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        17 ~t~~l~v~~~~TV~~lK~~i~~~--gi~~--~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ...++++.+..||++|...|...  ++..  ....+..||+...++..      |.++++|.+..+.-||
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~------l~dgDeVai~PpvsGG   82 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAA------LKDGDELAIIPPISGG   82 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcC------cCCCCEEEEeCCCCCC
Confidence            34677887888999999998765  2211  22346789988765543      5788999888777775

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=81.40  E-value=0.7  Score=43.56  Aligned_cols=72  Identities=22%  Similarity=0.376  Sum_probs=47.2

Q ss_pred             cCccCC-CCCceeeeeeecCCCCC------CCCCceeEcCCcccccCCceeEEEEeccCccccHHHHH-Hh-hcCCCCCC
Q 017480          160 YSYIKG-LKDLINVKLSRVPGAEE------NGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALK-EV-KSSSCLVC  230 (371)
Q Consensus       160 ~~HIks-LKDlv~Lklt~n~~~~~------~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alk-ev-k~~~CpvC  230 (371)
                      |.|-++ .|-=-.|+-.||..+++      .....+|.|-|+.+.+..  ++|  -.|||-|+..|.- .+ +...|-+|
T Consensus       161 flH~R~D~KtGWkLn~EWnA~~Ee~~v~~~~~e~IPF~C~iCKkdy~s--pvv--t~CGH~FC~~Cai~~y~kg~~C~~C  236 (259)
T COG5152         161 FLHDRSDFKTGWKLNQEWNAEYEEAPVISGPGEKIPFLCGICKKDYES--PVV--TECGHSFCSLCAIRKYQKGDECGVC  236 (259)
T ss_pred             hhhhhhhhhcccccchhhcchhhhcccccCCCCCCceeehhchhhccc--hhh--hhcchhHHHHHHHHHhccCCcceec
Confidence            445553 23333455566654432      235678999999998753  333  6799999988754 44 46799999


Q ss_pred             CCCcC
Q 017480          231 HEEFG  235 (371)
Q Consensus       231 g~~f~  235 (371)
                      |+.-.
T Consensus       237 gk~t~  241 (259)
T COG5152         237 GKATY  241 (259)
T ss_pred             chhhc
Confidence            98643

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.22  E-value=0.69  Score=45.98  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=39.3

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cC-CCCCCCCCcCCCceEEecCCh
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SS-SCLVCHEEFGEMDKILINGNE  246 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~-~CpvCg~~f~~~DiI~Lnp~~  246 (371)
                      .|||+.-.++  ++  ..-+|+|+|+.-|+|-.-  .+ .|++|-.+|.+.  |.++|+-
T Consensus         9 eC~IC~nt~n--~P--v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~--i~~~psl   62 (324)
T KOG0824|consen    9 ECLICYNTGN--CP--VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST--IDFEPSL   62 (324)
T ss_pred             cceeeeccCC--cC--ccccccchhhhhhhcchhhcCCCCCceecCCCCcc--hhcchhh
Confidence            5888887665  33  456899999999999873  34 599999999865  7777754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.85
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.85
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.84
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.84
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.82
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.81
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.8
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.8
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.8
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.79
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.79
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.78
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.78
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.78
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.78
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.78
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.77
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.77
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.77
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.76
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.76
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.76
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.75
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.75
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.75
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.74
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.74
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.59
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.74
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.73
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.73
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.73
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.73
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.72
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.72
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.72
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.71
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.71
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.7
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.7
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.7
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.7
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.7
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.7
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.7
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.69
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.68
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.68
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.67
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.67
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.67
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.66
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.66
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.66
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.66
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.66
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.66
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.66
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.65
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.64
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.64
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.63
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.62
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.62
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.58
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.58
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.56
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.55
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.52
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.52
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.52
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.5
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.5
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.49
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.47
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.45
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.44
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.43
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.41
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.4
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.4
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.39
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.36
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.33
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.32
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.3
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.3
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.26
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.25
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.24
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.23
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.21
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.18
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.04
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.01
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.89
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.66
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.63
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.55
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.43
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.43
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.39
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.27
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.23
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.13
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.97
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.89
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	97.82
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.78
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	97.77
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	97.74
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.72
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.69
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.67
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.66
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.64
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.61
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.61
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	97.58
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.55
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.52
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.5
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	97.48
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.48
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.46
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.45
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.43
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.36
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.34
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.34
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.34
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.32
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	97.31
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	97.27
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.27
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.25
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.23
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.22
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.21
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.15
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.12
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.11
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	97.11
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.03
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	96.99
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	96.99
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	96.96
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	96.94
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	96.89
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	96.86
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.84
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	96.74
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	96.73
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.72
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	96.71
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	96.71
1z6u_A	150	NP95-like ring finger protein isoform B; structura	96.7
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	96.61
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	96.61
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	96.59
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	96.52
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.46
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	96.38
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	96.37
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	96.33
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	96.3
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.25
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	96.22
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.17
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	96.04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	96.01
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	95.9
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	95.81
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	95.75
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	95.64
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	95.64
2ea5_A	68	Cell growth regulator with ring finger domain prot	95.49
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	95.47
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	95.42
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	94.91
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	94.81
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	94.33
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	94.13
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.79
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	93.75
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	93.74
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	93.5
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	93.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.49
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	93.13
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	92.62
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	91.84
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	91.37
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	91.16
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	90.44
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	89.85
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	89.44
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	89.0
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	88.99
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	88.94
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	88.67
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	88.51
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	86.77
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	86.67
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	86.27
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	86.18
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	85.86
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	85.8
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	85.61
2inc_C	83	TOUB protein; DIIRON, 4-helix bundle, carboxylate	84.3
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	84.19
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	84.07
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	83.0
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	82.84
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	81.73
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	81.51
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	80.91
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	80.69
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	80.42

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=152.30  Aligned_cols=78  Identities=26%  Similarity=0.439  Sum_probs=73.7

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      |...||||||+++|+  +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||++||
T Consensus         1 ~~~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL-~~~~i~~~~~l~l~~rl   77 (79)
T 3phx_B            1 MDEPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRL   77 (79)
T ss_dssp             --CCEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECC
T ss_pred             CCCCEEEEEEeCCCC--EEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEec
Confidence            788999999999997  7788999999999999999999 9999999999999999999999 99999999999999999


Q ss_pred             cC
Q 017480           80 FG   81 (371)
Q Consensus        80 ~G   81 (371)
                      +|
T Consensus        78 ~G   79 (79)
T 3phx_B           78 RG   79 (79)
T ss_dssp             BC
T ss_pred             CC
Confidence            98

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.85  E-value=1.5e-21  Score=153.22  Aligned_cols=82  Identities=24%  Similarity=0.400  Sum_probs=71.1

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      +.||||||+++|+  ++++++++++||.+||++|++. ++|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+||+|
T Consensus         2 s~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL-~~~~i~~~~~i~l~~rl~G   78 (85)
T 3n3k_B            2 SHMRIVVKTLMGR--TIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIHNHSALYLLLKLRG   78 (85)
T ss_dssp             --CEEEEECGGGC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBT-TTTTCCTTCEEEEEECCC-
T ss_pred             CeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCH-HHCCCCCCCEEEEEEeccC
Confidence            4699999999997  7889999999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             CCCCCc
Q 017480           82 GGGDGG   87 (371)
Q Consensus        82 ~~~~~~   87 (371)
                      |+++||
T Consensus        79 G~g~~~   84 (85)
T 3n3k_B           79 GGGGGS   84 (85)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            999987

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.84  E-value=4.7e-21  Score=150.22  Aligned_cols=82  Identities=29%  Similarity=0.472  Sum_probs=73.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      +.||||||+++|+  ++++++++++||.+||++|++. ++|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+|++|
T Consensus         2 s~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL-~~~~i~~~~~l~l~~r~~G   78 (85)
T 3mtn_B            2 SHMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKWSTLFLLLRLRG   78 (85)
T ss_dssp             -CEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT-GGGTCCTTCEEEEECCCCC
T ss_pred             CeEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEECcC
Confidence            5799999999996  7788999999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             CCCCCc
Q 017480           82 GGGDGG   87 (371)
Q Consensus        82 ~~~~~~   87 (371)
                      |+++|+
T Consensus        79 G~ggg~   84 (85)
T 3mtn_B           79 GGGGGS   84 (85)
T ss_dssp             C-----
T ss_pred             CCCCCC
Confidence            998876

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.84  E-value=4.6e-21  Score=153.58  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ||||||+++|+  +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+||+||+
T Consensus         1 M~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA-ADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT-TTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcH-HHcCCCCCCEEEEEEECCCCC
Confidence            89999999997  7889999999999999999999 9999999999999999999999 999999999999999999999


Q ss_pred             CCCccc
Q 017480           84 GDGGAT   89 (371)
Q Consensus        84 ~~~~si   89 (371)
                      ..|.+-
T Consensus        78 ~~~~~~   83 (88)
T 4fbj_B           78 GLRQKH   83 (88)
T ss_dssp             ------
T ss_pred             CCCccc
Confidence            998753

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=2.8e-20  Score=147.23  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+.+|+  ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|++|
T Consensus         6 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL-~~~~i~~g~~i~l~~~~~G   82 (87)
T 1wh3_A            6 SGIQVFVKNPDGG--SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGL-GIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             SSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBH-HHHTCCTTEEEEEEECSCC
T ss_pred             CCEEEEEEcCCCC--EEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCH-HHCCCCCCCEEEEEEeccC
Confidence            5799999999996  7789999999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             CCCCC
Q 017480           82 GGGDG   86 (371)
Q Consensus        82 ~~~~~   86 (371)
                      |..+|
T Consensus        83 G~~~g   87 (87)
T 1wh3_A           83 GPSSG   87 (87)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            98876

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.81  E-value=6e-20  Score=147.06  Aligned_cols=79  Identities=30%  Similarity=0.384  Sum_probs=68.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .||||||+++|+  ++.+++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++||
T Consensus         9 ~~~i~v~~~~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A            9 GLQLFIKTLTGK--TFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             -CEEEEEETTSC--EEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBS-GGGTCCTTCEEEEEC-----
T ss_pred             ceEEEEEeCCCC--EEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence            599999999997  7889999999999999999999 9999999999999999999999 99999999999999999999


Q ss_pred             CCC
Q 017480           83 GGD   85 (371)
Q Consensus        83 ~~~   85 (371)
                      +.|
T Consensus        86 ~~~   88 (88)
T 1sif_A           86 GLD   88 (88)
T ss_dssp             ---
T ss_pred             CCC
Confidence            876

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.80  E-value=3.4e-20  Score=148.36  Aligned_cols=82  Identities=26%  Similarity=0.425  Sum_probs=71.3

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      |-..||||||+.+|+  +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|+
T Consensus         1 m~~~m~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~~I~~g~~i~l~~~~   77 (88)
T 2hj8_A            1 MDEPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRL   77 (88)
T ss_dssp             -CCEEEEEEEETTSC--EEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBH-HHHHCSTTCEEEEEEC-
T ss_pred             CCccEEEEEECCCCC--EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEEc
Confidence            778999999999996  7788899999999999999999 9999999999999999999999 99999999999999999


Q ss_pred             cCCCCC
Q 017480           80 FGGGGD   85 (371)
Q Consensus        80 ~G~~~~   85 (371)
                      +||+.+
T Consensus        78 ~gg~~~   83 (88)
T 2hj8_A           78 RGGLEH   83 (88)
T ss_dssp             ------
T ss_pred             CCCccc
Confidence            999875

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.80  E-value=1.1e-19  Score=143.81  Aligned_cols=77  Identities=16%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+++|+  +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||.+||+|
T Consensus        11 ~~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL-~~~~i~~~~~i~l~~rl~G   87 (88)
T 3dbh_I           11 GSMLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA-ADYKILGGSVLHLVLRLRG   87 (88)
T ss_dssp             CCEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBG-GGGTCCTTCEEEECCCCCC
T ss_pred             CcEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeCCC
Confidence            4699999999997  7789999999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        88 G   88 (88)
T 3dbh_I           88 G   88 (88)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.80  E-value=1.8e-19  Score=137.82  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+.+|+  ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++||
T Consensus         1 M~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA-ADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence            89999999997  7789999999999999999999 9999999999999999999999 99999999999999999997

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.79  E-value=1.2e-19  Score=147.69  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=75.0

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEEeeec
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ..||||||++++   +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+ .+| ++|+|.+++||+|++|++
T Consensus        14 ~~~~I~Vk~~~~---~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL-~~ygI~~gstl~lv~r~~   89 (94)
T 2kan_A           14 RKIHVTVKFPSK---QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNL-NEYGITEFSEIVVFLKSI   89 (94)
T ss_dssp             CCEEEEEECSSC---EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBH-HHHTCCTTEEEEEEECCC
T ss_pred             CCEEEEEEcCCc---EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccH-HHCCCCCCCEEEEEEeCC
Confidence            569999999988   5789999999999999999999 9999999999999999999 999 999999999999999999


Q ss_pred             CCCCC
Q 017480           81 GGGGD   85 (371)
Q Consensus        81 G~~~~   85 (371)
                      ||+.|
T Consensus        90 gg~~~   94 (94)
T 2kan_A           90 NRAKD   94 (94)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            99876

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.79  E-value=9.3e-20  Score=141.97  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=72.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      +.||||||+++|+  +++++|.+++||.+||++|++. |+|+++|+|+|+|++|+|+.|| ++|+|.+++||||.+|++|
T Consensus         2 ~~m~i~vk~~~g~--~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl-~~~~i~~~~~i~l~~~~~G   78 (79)
T 2uyz_B            2 EYIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQTG   78 (79)
T ss_dssp             CEEEEEEECTTCC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCH-HHHTCCTTEEEEEEECCCC
T ss_pred             CeEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCH-HHcCCCCCCEEEEEEeccC
Confidence            3699999999997  6788888999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        79 G   79 (79)
T 2uyz_B           79 G   79 (79)
T ss_dssp             -
T ss_pred             C
Confidence            7

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.8e-19  Score=145.10  Aligned_cols=77  Identities=26%  Similarity=0.369  Sum_probs=73.5

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+++|+  ++.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.++++|+|.+||+|
T Consensus        21 ~~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i~~g~~i~l~~rl~G   97 (98)
T 4hcn_B           21 RPMQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRG   97 (98)
T ss_dssp             -CCEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBS-GGGTCCTTEEEEEECBCSC
T ss_pred             CeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEecCC
Confidence            4699999999997  7889999999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        98 G   98 (98)
T 4hcn_B           98 G   98 (98)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.78  E-value=4.7e-19  Score=155.19  Aligned_cols=79  Identities=27%  Similarity=0.471  Sum_probs=73.0

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      +..||||||+++|+  +++++|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||+
T Consensus        79 ~~~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL-~~y~i~~g~~l~l~~rl~  155 (159)
T 3rt3_B           79 DEPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRLR  155 (159)
T ss_dssp             CCCEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECCC
T ss_pred             CCcEEEEEECCCCC--EEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCH-HHcCCCCCCEEEEEEecC
Confidence            46799999999997  7889999999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CCC
Q 017480           81 GGG   83 (371)
Q Consensus        81 G~~   83 (371)
                      |||
T Consensus       156 GG~  158 (159)
T 3rt3_B          156 GGG  158 (159)
T ss_dssp             ---
T ss_pred             CCC
Confidence            997

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=5.7e-19  Score=140.45  Aligned_cols=82  Identities=21%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             cceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            3 SKTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ..||||||+.+|+ .+++| +|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||.+|++
T Consensus         6 ~~m~i~Vk~~~g~-~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~~~~   83 (89)
T 1wy8_A            6 SGMWIQVRTIDGS-KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTL-FDYDVGLNDIIQLLVRPD   83 (89)
T ss_dssp             SCEEEEEEETTCS-CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBH-HHHTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCC-ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCH-HHCCCCCCCEEEEEEeCC
Confidence            5699999999993 26789 599999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CCCCCC
Q 017480           81 GGGGDG   86 (371)
Q Consensus        81 G~~~~~   86 (371)
                      ||.-.|
T Consensus        84 gG~~~~   89 (89)
T 1wy8_A           84 SGPSSG   89 (89)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            986544

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.78  E-value=6.1e-19  Score=142.17  Aligned_cols=78  Identities=24%  Similarity=0.311  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .||||||+.+|+  ++.|+|++++||.+||++|++. |+|+++|+|+|+|+.|+|+.+| .+|+|.+++||||.+|++||
T Consensus         1 gm~i~vk~~~g~--~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL-~~~~i~~~~~i~l~~r~~gG   77 (96)
T 3k9o_B            1 GMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGY   77 (96)
T ss_dssp             -CEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCCC-
T ss_pred             CcEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEEcCCC
Confidence            499999999997  7889999999999999999999 9999999999999999999999 99999999999999999998


Q ss_pred             CC
Q 017480           83 GG   84 (371)
Q Consensus        83 ~~   84 (371)
                      +.
T Consensus        78 ~~   79 (96)
T 3k9o_B           78 AD   79 (96)
T ss_dssp             --
T ss_pred             Cc
Confidence            65

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.78  E-value=7.6e-19  Score=134.36  Aligned_cols=75  Identities=27%  Similarity=0.371  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+.+|+  ++.+++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++||
T Consensus         1 M~i~vk~~~g~--~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-GGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCC--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence            89999999996  7789999999999999999999 9999999999999999999999 99999999999999999987

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.77  E-value=2.8e-19  Score=145.84  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=73.3

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+++|+  +++|+|.+++||.+||++|++. |||+++|||+|+|++|+|+.|| ++|+|.+++||||.+|++|
T Consensus        20 ~~m~I~Vk~~~g~--~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl-~dy~i~~g~~I~l~~~~~G   96 (97)
T 1wyw_B           20 EYIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQTG   96 (97)
T ss_dssp             CEEEEEEECTTCC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCH-HHHTCCTTCEEEEEESSSC
T ss_pred             CcEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCH-HHCCCCCCCEEEEEEecCC
Confidence            3599999999997  6788888999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        97 G   97 (97)
T 1wyw_B           97 G   97 (97)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.77  E-value=5.4e-19  Score=143.14  Aligned_cols=76  Identities=25%  Similarity=0.381  Sum_probs=70.4

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ...||||||+  |+  +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|++||+
T Consensus        17 ~~~m~I~Vk~--g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~y~I~~gstI~lv~rl~   91 (93)
T 2l7r_A           17 RGSMQLFVRA--QE--LHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATL-GQCGVEALTTLEVAGRML   91 (93)
T ss_dssp             ---CEEEEES--SS--EEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBH-HHHTCCSSCEEEEECCCC
T ss_pred             CCcEEEEEEC--CC--EEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEecC
Confidence            3569999999  65  7889999999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CC
Q 017480           81 GG   82 (371)
Q Consensus        81 G~   82 (371)
                      ||
T Consensus        92 GG   93 (93)
T 2l7r_A           92 GG   93 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.77  E-value=9.2e-19  Score=145.97  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             cceEEEEEcC---CCCeeeEEEEcCC-CCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            3 SKTQIFIKSP---SNSLTTLTVGANQ-FETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         3 ~~MQIFVk~~---~g~~~t~~l~v~~-~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      ..||||||++   +|+  +++++|++ ++||.+||++|+.. |||+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+
T Consensus        26 ~~i~i~Vk~~~~~~g~--~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL-~~y~I~~g~~l~l~~  102 (111)
T 1we6_A           26 GPATIRVSKPNENDGQ--FMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSL-AHYNVGAGEILTLSL  102 (111)
T ss_dssp             SCEEEEECCTTCSSSC--CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBT-TTTTCSSSCEEEEEC
T ss_pred             CcEEEEEEecccCCCc--EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcH-HHCCCCCCCEEEEEE
Confidence            4699999999   775  67899998 99999999999999 9999999999999999999999 999999999999999


Q ss_pred             eecCCCCCC
Q 017480           78 RVFGGGGDG   86 (371)
Q Consensus        78 rL~G~~~~~   86 (371)
                      |++||..||
T Consensus       103 r~~GGk~h~  111 (111)
T 1we6_A          103 RERSGPSSG  111 (111)
T ss_dssp             SSCCSSCCC
T ss_pred             EcCCCCCCC
Confidence            999999987

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.76  E-value=1.2e-18  Score=156.19  Aligned_cols=80  Identities=28%  Similarity=0.401  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ||||||+++|+  +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||.+|++||+
T Consensus         1 MqI~Vk~~~Gk--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~y~I~~gstI~Lvlrl~GG~   77 (169)
T 3l0w_B            1 MQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGG   77 (169)
T ss_dssp             CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECCCC--
T ss_pred             CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcH-HHcCCCCCCEEEEEEEecccc
Confidence            99999999997  7889999999999999999999 9999999999999999999999 999999999999999999998


Q ss_pred             CCCc
Q 017480           84 GDGG   87 (371)
Q Consensus        84 ~~~~   87 (371)
                      .+|=
T Consensus        78 k~~v   81 (169)
T 3l0w_B           78 GETI   81 (169)
T ss_dssp             -CCE
T ss_pred             cccc
Confidence            7763

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=1.2e-18  Score=140.44  Aligned_cols=83  Identities=22%  Similarity=0.275  Sum_probs=76.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCCceEEEeCCeeCCCCCCcccCC--CCCCCCeEEEEe
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLSSLYFTLNGKILDESTPLFKNP--QIAPLSTLYLRQ   77 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~~q~Li~~Gk~L~D~~tL~~~~--~I~~~sTL~L~l   77 (371)
                      ..|||+||+.++...+++|++++++||.+||++|++.   ++|+++|+|+|+|++|+|+.+| .+|  +|.+++||||++
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL-~~~~~~i~~~~~i~lv~   84 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL-RDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCH-HHHSCSSSCSEEEEEEC
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCH-HHHhcCCCCCCEEEEEe
Confidence            3599999999997667889998999999999999986   7999999999999999999999 999  999999999999


Q ss_pred             eecCCCCCC
Q 017480           78 RVFGGGGDG   86 (371)
Q Consensus        78 rL~G~~~~~   86 (371)
                      |++||+..|
T Consensus        85 ~~~gg~~~~   93 (93)
T 1wgd_A           85 NVKSGPSSG   93 (93)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCC
Confidence            999987654

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.76  E-value=1.3e-18  Score=142.18  Aligned_cols=71  Identities=11%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      ..||||||+.+|+  +++|+|++++||.+||++|+++ |+|+++|||+|+|++|+|+.|| ++|+|++++||+|-
T Consensus        20 ~mIqI~Vk~~~Gk--k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL-~dY~I~dgstLhL~   91 (93)
T 3plu_A           20 HMIEVVVNDRLGK--KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISL-EDYEVHDQTNLELY   91 (93)
T ss_dssp             CEEEEEEECTTSC--EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEE
T ss_pred             ceEEEEEECCCCC--EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCH-HHcCCCCCCEEEEE
Confidence            4699999999997  7889999999999999999999 9999999999999999999999 99999999999984

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.75  E-value=2e-18  Score=137.71  Aligned_cols=81  Identities=11%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+++|+  +++|+|++++||.+||++|++. |+|+++|+|+|+|+.|+|+.+| .+|+| +++||||++|+++
T Consensus         4 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL-~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            4 DSLEVLVKTLDSQ--TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKL-QEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             CEEEEEEEETTCC--EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTC-TTEEEEEEECCCC
T ss_pred             cEEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCH-HHcCC-CCcEEEEEecCCC
Confidence            5699999999997  6788888999999999999999 9999999999999999999999 99999 8999999999998


Q ss_pred             CCCCCc
Q 017480           82 GGGDGG   87 (371)
Q Consensus        82 ~~~~~~   87 (371)
                      +....+
T Consensus        80 ~~~~~~   85 (90)
T 4dwf_A           80 QTHLPS   85 (90)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            765443

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.75  E-value=3.2e-18  Score=143.09  Aligned_cols=76  Identities=26%  Similarity=0.366  Sum_probs=72.5

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .||||||+++|+  ++.|+|++++||.+||.+|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||++||+||
T Consensus        35 ~m~I~Vk~~~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           35 AMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             CEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-TTTTCCTTCEEEEEECCCC-
T ss_pred             cEEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEecCCC
Confidence            599999999997  7789999999999999999999 9999999999999999999999 99999999999999999997

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.75  E-value=3e-18  Score=137.45  Aligned_cols=75  Identities=21%  Similarity=0.300  Sum_probs=71.7

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ..||||||+.+|+  ++.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|||.+++||+|++|||
T Consensus        16 ~~m~i~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           16 GSMQIFVNTLTGT--HITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CSEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBT-GGGTCCTTCEEEEECCCC
T ss_pred             CeEEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcH-HHCCCCCCCEEEEEEecC
Confidence            4699999999997  7889999999999999999999 9999999999999999999999 999999999999999987

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.74  E-value=1.1e-18  Score=148.29  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCC-------CCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIA-------PLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~-------~~sTL~L~   76 (371)
                      ||+||+...++ .+++|+|.+++||.+||++|+++ |||+++|||+|+|++|+|+.|| ++|||+       .++||||+
T Consensus         1 M~mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TL-sdy~I~~~~a~~q~~stL~L~   78 (118)
T 2fnj_B            1 MDVFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTL-GECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBH-HHHTCCTTTSBTTBCEEEEEE
T ss_pred             CcEEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCH-HHcCcccccccCCCCCEEEEE
Confidence            44455444454 36889999999999999999999 9999999999999999999999 999999       79999999


Q ss_pred             eeecCCCC
Q 017480           77 QRVFGGGG   84 (371)
Q Consensus        77 lrL~G~~~   84 (371)
                      +| .||.-
T Consensus        79 lr-~~g~f   85 (118)
T 2fnj_B           79 FR-ADDTF   85 (118)
T ss_dssp             EB-SSSCB
T ss_pred             ec-CCCce
Confidence            99 55543

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.9e-18  Score=139.33  Aligned_cols=73  Identities=16%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHH-hcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-CCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSL-LSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-APLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i-~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-~~~sTL~L~lr   78 (371)
                      ||||||+++|+..++.+++++++||.+||++| ++. |+|+++|+|+|+|++|+|+.+| ++|+| ++++||+|.++
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL-~~y~I~~~~stl~v~~~   77 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFL-SDLKVTPANSTITVMIK   77 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBH-HHHCCCGGGCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCH-HHcCCCCCCCEEEEEcC
Confidence            99999999998444444566999999999999 888 9999999999999999999999 99999 79999999876

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.59  E-value=1.3e-19  Score=139.74  Aligned_cols=74  Identities=18%  Similarity=0.190  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ||||||+.+|+  ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+||||
T Consensus         1 M~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSY--GFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTV-QNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            99999999997  6788999999999999999999 9999999999999999999999 9999999999999999997

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.74  E-value=5.3e-18  Score=137.82  Aligned_cols=82  Identities=24%  Similarity=0.349  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ||||||+.+|+  ++.+++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.++++|+|.+|++||.
T Consensus         1 M~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~~~~gG~   77 (98)
T 1yx5_B            1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGR   77 (98)
T ss_dssp             CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCCCC-
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEeCCCCC
Confidence            99999999996  7789999999999999999999 9999999999999999999999 999999999999999999987


Q ss_pred             CCCccc
Q 017480           84 GDGGAT   89 (371)
Q Consensus        84 ~~~~si   89 (371)
                      .-++.+
T Consensus        78 ~i~~~~   83 (98)
T 1yx5_B           78 DPNSSS   83 (98)
T ss_dssp             ------
T ss_pred             cCcccc
Confidence            766665

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.73  E-value=1.6e-19  Score=154.44  Aligned_cols=80  Identities=25%  Similarity=0.327  Sum_probs=3.7

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ||||||+++|+  +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| ++|+|.+++||+|++|++||.
T Consensus         1 M~I~Vk~~~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~~I~~gsti~l~~rl~GG~   77 (128)
T 3u5e_m            1 MQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGI   77 (128)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCch-hhhccCCCCEEEEEEEcCCCC
Confidence            89999999997  6788999999999999999999 9999999999999999999999 999999999999999999998


Q ss_pred             CCCc
Q 017480           84 GDGG   87 (371)
Q Consensus        84 ~~~~   87 (371)
                      .+|+
T Consensus        78 ~~~s   81 (128)
T 3u5e_m           78 IEPS   81 (128)
T ss_dssp             CCHH
T ss_pred             CChh
Confidence            8775

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=9.2e-18  Score=130.12  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=69.4

Q ss_pred             ceEEEEEcCCCCeee-EEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            4 KTQIFIKSPSNSLTT-LTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t-~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      .||||||+.+|+  + ++++ +++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|+
T Consensus         2 ~m~i~Vk~~~g~--~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL-~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            2 SMWIQVRTMDGR--QTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL-FDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             CEEEEEEETTSS--CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-TTTTCCTTCEEEEEECC
T ss_pred             cEEEEEEECCCC--EEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEeC
Confidence            699999999997  5 4788 99999999999999999 9999999999999999999999 99999999999999986

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.73  E-value=5.3e-18  Score=154.92  Aligned_cols=80  Identities=26%  Similarity=0.361  Sum_probs=75.3

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      |-.||||||+++|+  +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||+
T Consensus       103 ~~eMqI~VKtl~Gk--t~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL-~dygI~~gstI~Lvlrlr  179 (189)
T 3q3f_A          103 HYGGQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR  179 (189)
T ss_dssp             CCCEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBG-GGGTCCTTCEEEECCCCC
T ss_pred             ccceeeeeecCCCC--EEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCH-HHCCCCCCCEEEEEEEcC
Confidence            34699999999997  7889999999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CCCC
Q 017480           81 GGGG   84 (371)
Q Consensus        81 G~~~   84 (371)
                      ||+.
T Consensus       180 GG~~  183 (189)
T 3q3f_A          180 GGGQ  183 (189)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9854

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.73  E-value=6.3e-18  Score=134.78  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=70.5

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-CCCCCCcccCCCCCCCCeEEEEee
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-LDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ++.|+||||+++|+  +++++|++++||++||++|++. |+|+++|+|+|+|++ |+|+.+| ++|+|.+++||+|++|
T Consensus         8 ~~~~~i~vk~l~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL-~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            8 HSHMKFLVENLNGS--SFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTV-EQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCCEEEEEEETTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBH-HHHTCCTTSCEEEEEC
T ss_pred             cCceEEEEEecCCc--EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCH-HHcCCCCCCEEEEEEc
Confidence            46799999999997  7889999999999999999999 999999999999999 9999999 9999999999999886

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=4.3e-18  Score=140.87  Aligned_cols=71  Identities=14%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .+||||||+++|+  +++|+|++++||.+||++|+++ |+|+++|||+|+|++|+|+.+| ++|+|++++||||.
T Consensus        27 ~mm~I~VKtl~Gk--~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL-~dygI~~gstlhL~   98 (100)
T 1uh6_A           27 TMIEVVCNDRLGK--KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL-GDYEIHDGMNLELY   98 (100)
T ss_dssp             CEEEEEEECSSSS--CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBH-HHHTCCTTEEEEEE
T ss_pred             CeEEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCH-HHcCCCCCCEEEEE
Confidence            3599999999996  7889999999999999999999 9999999999999999999999 99999999999986

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.72  E-value=1.8e-17  Score=142.45  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=71.2

Q ss_pred             cceEEEEEcCCCCeeeE-EEEcCCCCCHHHHHHHH-----hcc-CCCC--CceEEEeCCeeCCCCCCcccCCCCCCC---
Q 017480            3 SKTQIFIKSPSNSLTTL-TVGANQFETLNHLKRSL-----LSL-DQSL--SSLYFTLNGKILDESTPLFKNPQIAPL---   70 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~-~l~v~~~~TV~~lK~~i-----~~~-gi~~--~~q~Li~~Gk~L~D~~tL~~~~~I~~~---   70 (371)
                      ..|||+||+++|.  .+ .+++++++||.+||++|     ++. |+|+  ++|||||+||+|+|+.|| ++|+|+.+   
T Consensus        15 ~~~~i~~kt~~G~--~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TL-sdy~I~~~~~~   91 (126)
T 1se9_A           15 NQLEIKFRLTDGS--DIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTV-KDYRSPVSNLA   91 (126)
T ss_dssp             CCEEEEEEETTSC--EEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBG-GGGSCCTTSCT
T ss_pred             ccEEEEEEECCCC--EEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcH-HHcCCCcCCcc
Confidence            5699999999996  45 68999999999999999     567 8886  899999999999999999 99999988   


Q ss_pred             ---CeEEEEeeecCCC
Q 017480           71 ---STLYLRQRVFGGG   83 (371)
Q Consensus        71 ---sTL~L~lrL~G~~   83 (371)
                         +|+||++|++||+
T Consensus        92 ~~v~tmhlVlrl~g~~  107 (126)
T 1se9_A           92 GAVTTMHVIIQAPVTE  107 (126)
T ss_dssp             TCCEEEEEEECCCSSC
T ss_pred             CCcEEEEEEeccCCcc
Confidence               7899999999874

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.72  E-value=2.2e-17  Score=137.68  Aligned_cols=77  Identities=26%  Similarity=0.352  Sum_probs=72.5

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+.+|+  ++.++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|++|
T Consensus        34 ~~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~gI~~gs~I~l~~rl~G  110 (111)
T 2ojr_A           34 LAMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRG  110 (111)
T ss_dssp             SCEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBT-TTTTCCTTCEEEEEECCCC
T ss_pred             CeEEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCC
Confidence            3699999999996  6788999999999999999999 9999999999999999999999 9999999999999999998


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus       111 G  111 (111)
T 2ojr_A          111 G  111 (111)
T ss_dssp             -
T ss_pred             C
Confidence            7

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.71  E-value=5.2e-19  Score=156.38  Aligned_cols=76  Identities=28%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ||||||+++|+  +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| ++|+|++++||+|++||+|||
T Consensus         1 MqI~VK~l~G~--~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~dygI~~gstL~Lvlrl~GGg   77 (152)
T 3u5c_f            1 MQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGG   77 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcH-HHcCCCCCCEEEEEeeccCCC
Confidence            99999999997  6788999999999999999999 9999999999999999999999 999999999999999999975

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.4e-17  Score=137.62  Aligned_cols=79  Identities=25%  Similarity=0.338  Sum_probs=74.9

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      +..+|||||+++|+  ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++
T Consensus         7 ~~~~~i~vk~l~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~~gstI~l~~~~~   83 (114)
T 2kdi_A            7 HGEFQIFAKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTL-SDYNIQRESTLHLVLRLR   83 (114)
T ss_dssp             CCCCEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-TTTTCCSSCEEEEEECCC
T ss_pred             CCcEEEEEEeCCCc--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEEcC
Confidence            35689999999997  7889999999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CCC
Q 017480           81 GGG   83 (371)
Q Consensus        81 G~~   83 (371)
                      ||.
T Consensus        84 GG~   86 (114)
T 2kdi_A           84 GGS   86 (114)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            875

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.70  E-value=4.2e-17  Score=134.24  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=69.5

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHH-hcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-CCCCeEEEEee
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSL-LSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-APLSTLYLRQR   78 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i-~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-~~~sTL~L~lr   78 (371)
                      ..||||||+++|+..++.|+|++++||.+||++| ++. |+|+++|+|+|+|++|+|+.+| ++|+| .+++||+|.++
T Consensus        18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL-~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFL-SDLKVTPANSTITVMIK   95 (98)
T ss_dssp             CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBG-GGSCCBTTBCEEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCH-HHcCcCCCCCEEEEEEe
Confidence            5699999999998666677888999999999999 888 9999999999999999999999 99999 99999999875

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=4.3e-17  Score=138.21  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=69.2

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc------c-CC--CCCceEEEeCCeeCCCCCCcccCCCCCCC--C
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS------L-DQ--SLSSLYFTLNGKILDESTPLFKNPQIAPL--S   71 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~------~-gi--~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~--s   71 (371)
                      ..||||||+++|+  +++|+|++++||++||++|++      + ++  |+++|||||+||+|+|+.|| ++|+|+.+  +
T Consensus        15 ~~m~I~vKtl~G~--t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL-~~y~I~~~~~~   91 (116)
T 1wgh_A           15 DMINLRLILVSGK--TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL-GALKLPFGKTT   91 (116)
T ss_dssp             SSEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBT-TTTTCCSSCEE
T ss_pred             CeEEEEEEeCCCC--EEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcH-HHcCCCCCCce
Confidence            4599999999996  788999999999999999998      6 64  79999999999999999999 99999766  6


Q ss_pred             eEEEEeeecCC
Q 017480           72 TLYLRQRVFGG   82 (371)
Q Consensus        72 TL~L~lrL~G~   82 (371)
                      ||||++|+.+.
T Consensus        92 tlhLvlr~~~~  102 (116)
T 1wgh_A           92 VMHLVARETLP  102 (116)
T ss_dssp             EEEEEECSSCS
T ss_pred             EEEEEccCCCC
Confidence            89999988744

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.70  E-value=2.8e-17  Score=130.53  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=67.9

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ..||||||+++|+  ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+| +++||||++|
T Consensus        16 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i-~g~~i~lv~R   88 (88)
T 4eew_A           16 DSLEVLVKTLDSQ--TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKL-QEYNV-GGKVIHLVER   88 (88)
T ss_dssp             CEEEEEEEETTSC--EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTC-TTEEEEEEEC
T ss_pred             CeEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcH-HHcCC-CCcEEEEEEC
Confidence            4599999999997  6778888899999999999999 9999999999999999999999 99999 8999999987

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=4.1e-17  Score=126.75  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ..||||||+.+|+  ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|++
T Consensus         6 ~~m~i~vk~~~g~--~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~~~~   81 (81)
T 2dzi_A            6 SGMQLTVKALQGR--ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRL-SDYSIGPNSKLNLVVKPL   81 (81)
T ss_dssp             SSEEEEEEETTSC--EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBG-GGGTCCSSBCCEEECCCC
T ss_pred             CcEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeCC
Confidence            4699999999996  7788999999999999999999 9999999999999999999999 999999999999999975

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.70  E-value=2.2e-17  Score=146.77  Aligned_cols=78  Identities=27%  Similarity=0.376  Sum_probs=70.1

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      +..||||||+.+|+  ++++++++++||.+||.+|+.. |||+++|+|+|+|++|+|+.+| .+|+|++++||||.+|||
T Consensus        94 ~gg~~i~Vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL-~~y~i~~g~tl~l~~rlr  170 (172)
T 3u30_A           94 RGGMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR  170 (172)
T ss_dssp             CCCEEEEEEESSCC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBS-GGGTCCTTCEEEECC---
T ss_pred             cccccceeecccCc--ceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcH-HHhCCCCCCEEEEEEecC
Confidence            46799999999997  7888999999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CC
Q 017480           81 GG   82 (371)
Q Consensus        81 G~   82 (371)
                      ||
T Consensus       171 gG  172 (172)
T 3u30_A          171 GG  172 (172)
T ss_dssp             --
T ss_pred             CC
Confidence            97

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.70  E-value=1.5e-18  Score=158.47  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=1.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ||||||+++|+  +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| +     +++||||++||+||+
T Consensus         1 MqI~VKtL~Gk--titLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TL-s-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLEGE--TKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELV-T-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CEEEEEcCCCC--EEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCcc-c-----CCCEEEEEEecCCCc
Confidence            99999999996  7889999999999999999999 9999999999999999999999 5     889999999999987


Q ss_pred             CC
Q 017480           84 GD   85 (371)
Q Consensus        84 ~~   85 (371)
                      .+
T Consensus        73 ~k   74 (189)
T 2xzm_9           73 KK   74 (189)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=1.2e-17  Score=135.01  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=74.2

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+. |+  +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||++|++|
T Consensus        16 ~~m~i~Vk~~-g~--~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~~~~~   91 (96)
T 1wx8_A           16 RIIRVSVKTP-QD--CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDIL-SQRGILDGSTVHVVVRSHS   91 (96)
T ss_dssp             CEEEEEEECS-SS--EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCH-HHHTCCTTEEEECCBCCSS
T ss_pred             CcEEEEEEEC-Ce--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCH-HHCCCCCCCEEEEEEeCCC
Confidence            4699999998 75  6788888999999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             CCCCC
Q 017480           82 GGGDG   86 (371)
Q Consensus        82 ~~~~~   86 (371)
                      |+.-|
T Consensus        92 g~~~~   96 (96)
T 1wx8_A           92 GPSSG   96 (96)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            86544

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.69  E-value=3.8e-17  Score=140.16  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc------c-CC--CCCceEEEeCCeeCCCCCCcccCCCCCCCC--e
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS------L-DQ--SLSSLYFTLNGKILDESTPLFKNPQIAPLS--T   72 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~------~-gi--~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s--T   72 (371)
                      .|+|+||+++|.  +++|++++++||++||++|++      + |+  ++++|||||+||+|+|+.|| ++|+|+.++  |
T Consensus        17 ~m~I~vktl~G~--~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL-~~y~I~~~~~~t   93 (125)
T 2gow_A           17 MINLRLILVSGK--TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL-GALKLPFGKTTV   93 (125)
T ss_dssp             CEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBT-GGGCCCTTSEEE
T ss_pred             eEEEEEEeCCCC--EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcH-HHcCCCCCCceE
Confidence            399999999996  789999999999999999998      7 77  59999999999999999999 999999665  8


Q ss_pred             EEEEeeecCCCCC
Q 017480           73 LYLRQRVFGGGGD   85 (371)
Q Consensus        73 L~L~lrL~G~~~~   85 (371)
                      |||++|++|++-+
T Consensus        94 lhlv~r~~~~~~~  106 (125)
T 2gow_A           94 MHLVARETLPEPN  106 (125)
T ss_dssp             EEEEECSCCSSSS
T ss_pred             EEEEecCCCCccc
Confidence            9999999986655

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=3e-17  Score=135.79  Aligned_cols=81  Identities=11%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      +++||+.+..|.-.+++|+|++++||.+||++|++. |+|+++|+|||+||+|+|+.|| .+|+|++++|| |+++|+|.
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL-~~y~I~~gsti-~vl~lrg~   94 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-EEQGVAHNVKA-MVLELKQS   94 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBH-HHHTCCSSEEE-EEECCCCC
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcH-HHcCCCCCCEE-EEEEECCC
Confidence            578888775533468899999999999999999999 9999999999999999999999 99999999999 99999998


Q ss_pred             CCCC
Q 017480           83 GGDG   86 (371)
Q Consensus        83 ~~~~   86 (371)
                      ..+.
T Consensus        95 ~~~~   98 (100)
T 1wju_A           95 SGPS   98 (100)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            7654

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.68  E-value=4.4e-17  Score=138.42  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCC-------CCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAP-------LSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~-------~sTL~L~   76 (371)
                      |.+||+-..++ .|+.|++.+++||.+||++|+.. |||+++|||+|+|++|+|+.|| ++|||++       ++||||+
T Consensus         1 m~vFl~Ikr~k-tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL-~dy~I~~~ta~~q~~atl~Lv   78 (118)
T 4ajy_B            1 MDVFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTL-GECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-TTTTCCGGGSBTTBCEEEEEE
T ss_pred             CceEEEEecCC-EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCH-HHcCCCcCcccCCCCCEEEEE
Confidence            77888887776 57899999999999999999999 9999999999999999999999 9999999       9999999


Q ss_pred             eee
Q 017480           77 QRV   79 (371)
Q Consensus        77 lrL   79 (371)
                      +|+
T Consensus        79 lr~   81 (118)
T 4ajy_B           79 FRA   81 (118)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            996

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=9.4e-17  Score=133.10  Aligned_cols=73  Identities=12%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ||||||+++|+  +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|||.+++||+|.++-.
T Consensus         2 m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKE--KVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTV-SECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCC--EEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBT-TTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCH-HHcCCCCCCEEEEEEcCC
Confidence            99999999997  7889999999999999999999 9999999999999999999999 999999999999998854

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=2.1e-17  Score=137.79  Aligned_cols=76  Identities=13%  Similarity=0.116  Sum_probs=70.6

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC---------------CceEEEeCCeeCC-CCCCcccCCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL---------------SSLYFTLNGKILD-ESTPLFKNPQ   66 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~---------------~~q~Li~~Gk~L~-D~~tL~~~~~   66 (371)
                      .||||||+++|+  +++|+|.+++||.+||+.|++. ++|+               ++|+|+|+|++|. |+.+| .+||
T Consensus         7 ~M~I~Vk~l~g~--~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL-~dyg   83 (105)
T 1v2y_A            7 GMTVRVCKMDGE--VMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKL-RDYG   83 (105)
T ss_dssp             SEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBH-HHHT
T ss_pred             cEEEEEEecCCC--EEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCH-HHcC
Confidence            499999999997  7889999999999999999999 8876               5789999999996 67999 9999


Q ss_pred             CCCCCeEEEEeeecCC
Q 017480           67 IAPLSTLYLRQRVFGG   82 (371)
Q Consensus        67 I~~~sTL~L~lrL~G~   82 (371)
                      |.+++||||++||+|.
T Consensus        84 I~~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           84 IRNRDEVSFIKKLGQK   99 (105)
T ss_dssp             CCSSEEEEEEECSCSC
T ss_pred             CCCCCEEEEEehhccC
Confidence            9999999999999986

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.67  E-value=9.7e-17  Score=134.61  Aligned_cols=81  Identities=14%  Similarity=0.183  Sum_probs=75.2

Q ss_pred             cceEEEEEcCC----------CCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCC
Q 017480            3 SKTQIFIKSPS----------NSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLS   71 (371)
Q Consensus         3 ~~MQIFVk~~~----------g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s   71 (371)
                      ..++|+|+..+          |  .+++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G--~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL-~~y~i~~g~  100 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNG--QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSL-AYYNMASGA  100 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSS--EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBH-HHHTCCSSC
T ss_pred             CCEEEEEEcCCCccccccccCC--eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCH-HHCCCCCCC
Confidence            35899999864          4  37889999999999999999999 9999999999999999999999 999999999


Q ss_pred             eEEEEeeecCCCCCC
Q 017480           72 TLYLRQRVFGGGGDG   86 (371)
Q Consensus        72 TL~L~lrL~G~~~~~   86 (371)
                      ||||++|++||+.+|
T Consensus       101 ~i~lv~rl~GGk~~~  115 (115)
T 1we7_A          101 VIHLALKERSGPSSG  115 (115)
T ss_dssp             EEEEEECCCSCCSCC
T ss_pred             EEEEEEEcCCCCCCC
Confidence            999999999999876

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.66  E-value=3.1e-16  Score=123.21  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=68.3

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc----CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL----DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~----gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ..||||||+.+|+  ++++++++++||.+||++|+..    |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.++
T Consensus         4 ~~m~i~vk~~~g~--~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            4 MAVTITLKTLQQQ--TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI-RDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             CCEEEEEEETTSC--EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBG-GGGCCCTTSEEEEEEC
T ss_pred             ceEEEEEEECCCC--EEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCH-HHcCCCCCCEEEEEEc
Confidence            4699999999996  7788999999999999999993    7999999999999999999999 9999999999999876


Q ss_pred             e
Q 017480           79 V   79 (371)
Q Consensus        79 L   79 (371)
                      -
T Consensus        81 ~   81 (85)
T 2wyq_A           81 K   81 (85)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=1.4e-16  Score=130.94  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=72.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+.+|+   +.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++|
T Consensus        21 ~~m~I~Vk~~~g~---~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           21 HLIKVTVKTPKDK---EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL-AQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             TEEEEEEECSSCE---EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBH-HHHTCCTTCEEEEEECCCC
T ss_pred             CeEEEEEEcCCCc---EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH-HHCCCCCCCEEEEEEcCCC
Confidence            4599999999994   578888899999999999999 9999999999999999999999 9999999999999999998


Q ss_pred             CCC
Q 017480           82 GGG   84 (371)
Q Consensus        82 ~~~   84 (371)
                      +-.
T Consensus        97 ~p~   99 (100)
T 1yqb_A           97 RAM   99 (100)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            643

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.66  E-value=1.9e-16  Score=121.88  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ||||||+ +|+  ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|||.+++||||..+
T Consensus         5 m~i~vk~-~g~--~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQD--KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV-ESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTE--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCH-HHcCCCCCCEEEEEEc
Confidence            9999999 885  7789999999999999999999 9999999999999999999999 9999999999999764

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.66  E-value=1.9e-16  Score=140.80  Aligned_cols=77  Identities=27%  Similarity=0.375  Sum_probs=73.4

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+++|+  +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+|++|
T Consensus        19 ~~m~i~Vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL-~~~~i~~~~~l~l~~~~~g   95 (172)
T 3u30_A           19 SHMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRG   95 (172)
T ss_dssp             CCEEEEEEETTTE--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-GGGTCCTTCEEEEEECCCC
T ss_pred             CcEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCH-hHcCCcccceeeeeecccc
Confidence            4699999999996  7889999999999999999999 9999999999999999999999 9999999999999999997


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        96 g   96 (172)
T 3u30_A           96 G   96 (172)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=2.4e-16  Score=134.70  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+. |+  +++|+|++++||.+||.+|+.. |||+++|+|+|+|+.|+|+.+| .+|+|.+++||+|++|++|
T Consensus        31 ~~m~I~Vk~~-g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~dygI~~gstI~lv~~~~g  106 (125)
T 1j8c_A           31 KIIKVTVKTP-KE--KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTL-IQHGIHDGLTVHLVIKRDP  106 (125)
T ss_dssp             CCEEEEEECS-SC--EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCG-GGTTCSSSEEEEEEEC---
T ss_pred             CcEEEEEEeC-Ce--EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEeccCC
Confidence            4699999999 75  6889999999999999999999 9999999999999999999999 9999999999999999998


Q ss_pred             CCC
Q 017480           82 GGG   84 (371)
Q Consensus        82 ~~~   84 (371)
                      |+.
T Consensus       107 g~~  109 (125)
T 1j8c_A          107 NSS  109 (125)
T ss_dssp             ---
T ss_pred             CCC
Confidence            865

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=9.6e-17  Score=131.95  Aligned_cols=85  Identities=13%  Similarity=0.016  Sum_probs=74.7

Q ss_pred             CcceEEEEEcCCCC--eeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEEe
Q 017480            2 RSKTQIFIKSPSNS--LTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         2 ~~~MQIFVk~~~g~--~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~l   77 (371)
                      ...|||+||+.++.  -++++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+ .+| .+|+|.++++|+|.+
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL-~~ygI~~g~~l~l~~   83 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSL-GSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBH-HHHTCCTTEEEEECB
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccH-HHCCCCCCCEEEEEE
Confidence            35699999997652  137789999999999999999999 9999999999999999887 689 999999999999999


Q ss_pred             eecCCCCCCc
Q 017480           78 RVFGGGGDGG   87 (371)
Q Consensus        78 rL~G~~~~~~   87 (371)
                      |++||--..+
T Consensus        84 ~~~gg~~~~~   93 (102)
T 1v5o_A           84 KDNVGLRTPG   93 (102)
T ss_dssp             CCCCCCSSCC
T ss_pred             CCCCCCCCCC
Confidence            9998854444

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.66  E-value=2.6e-16  Score=135.28  Aligned_cols=78  Identities=27%  Similarity=0.376  Sum_probs=73.4

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      +..|||+||+.+|+  ++++++++++||.+||.+|+.. |+|+++|+|+|+|++|+|+.+| ++|+|.++++|||.+|++
T Consensus        74 ~~~~~i~Vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL-~~~~i~~~~~i~l~~r~~  150 (152)
T 3b08_A           74 RGGMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR  150 (152)
T ss_dssp             TTCEEEEEEESSSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCC
T ss_pred             ccccceeeeecCCC--EEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEecC
Confidence            45699999999996  7788999999999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CC
Q 017480           81 GG   82 (371)
Q Consensus        81 G~   82 (371)
                      ||
T Consensus       151 GG  152 (152)
T 3b08_A          151 GG  152 (152)
T ss_dssp             C-
T ss_pred             CC
Confidence            87

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=4.8e-16  Score=125.93  Aligned_cols=79  Identities=20%  Similarity=0.206  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc----CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL----DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~----gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ||||||+.+|+  +++++|++++||.+||++|++.    |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.++..
T Consensus         1 M~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~~g~~i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQQQ--TFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL-KEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCC--EEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBG-GGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCC--EEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcH-HHCCCCCCCEEEEEEeCC
Confidence            99999999997  7789999999999999999986    6999999999999999999999 999999999999998865


Q ss_pred             CCCCCC
Q 017480           81 GGGGDG   86 (371)
Q Consensus        81 G~~~~~   86 (371)
                      .++-..
T Consensus        78 ~~~~~~   83 (95)
T 1uel_A           78 KAVSTP   83 (95)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            444433

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=3e-16  Score=129.62  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=73.4

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+..|+   +.|+|++++||.+||++|++. |||+++|+|+|+|+.|+|+.+| .+|+|.++++|||.+|++|
T Consensus        16 ~~m~I~Vk~~~g~---~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           16 HLIKVTVKTPKDK---EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL-AQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             SEEEEEEECSSCE---EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCH-HHHTCCTTEEEEEEECCCC
T ss_pred             ceEEEEEEeCCCc---EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH-HHcCCCCCCEEEEEEcCCC
Confidence            3599999999984   578888899999999999999 9999999999999999999999 9999999999999999998


Q ss_pred             CCCC
Q 017480           82 GGGD   85 (371)
Q Consensus        82 ~~~~   85 (371)
                      |...
T Consensus        92 ~~~~   95 (106)
T 1wx7_A           92 RAMG   95 (106)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            8754

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=2.6e-16  Score=130.25  Aligned_cols=76  Identities=14%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .||||||+++|+  ++.++|++++||.+||.+|+.. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||++|...+
T Consensus        23 ~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~~g~ti~lv~~~~~~   99 (106)
T 1ttn_A           23 ECQLRLRLSTGK--DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKF-EELKIPKDYVVQVIVSQPVQ   99 (106)
T ss_dssp             SEEEEEEETTTE--EEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHH-HHCCCSSSCEEEEECCCSSC
T ss_pred             eEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence            599999999996  7889999999999999999999 9999999999999999999999 99999999999999987655

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.63  E-value=2.2e-16  Score=130.11  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc-c-CCC-CCceEEEeCCeeCCCCCCcccCC--CCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS-L-DQS-LSSLYFTLNGKILDESTPLFKNP--QIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~-~-gi~-~~~q~Li~~Gk~L~D~~tL~~~~--~I~~~sTL~L~   76 (371)
                      ..||||||+++|...+++|+|++++||.+||++|++ . |+| +++|||+|+|++|+|+.+| ++|  +|++++||||+
T Consensus        22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL-~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL-KDILRKQDEYHMVHLV   99 (99)
T ss_dssp             -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBT-HHHHTTTCSEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCH-HHHhcCCCCCCEEEeC
Confidence            459999999999755678999999999999999998 4 665 5999999999999999999 999  99999999984

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.62  E-value=9e-16  Score=134.24  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEE-e-CCeeCCCCCCcccCCCCCCCCeEEEEee-ec
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFT-L-NGKILDESTPLFKNPQIAPLSTLYLRQR-VF   80 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li-~-~Gk~L~D~~tL~~~~~I~~~sTL~L~lr-L~   80 (371)
                      ||||||+++|+  +++++|++++||.+||++|++. |+|+++|+|+ | +|++|+|+.+| ++|+|.+++||+|.++ +.
T Consensus         3 m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL-~~y~i~~~~~l~l~~~~~~   79 (159)
T 3rt3_B            3 WDLTVKMLAGN--EFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL-ASQGLGPGSTVLLVVDKSD   79 (159)
T ss_dssp             CEEEEEETTSC--EEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCG-GGGTCCTTCEEEEEECCCC
T ss_pred             eEEEEEECCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCH-HHcCCCCCCEEEEEccCCC
Confidence            99999999997  7889999999999999999999 9999999999 9 89999999999 9999999999999999 45


Q ss_pred             C
Q 017480           81 G   81 (371)
Q Consensus        81 G   81 (371)
                      |
T Consensus        80 ~   80 (159)
T 3rt3_B           80 E   80 (159)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=125.02  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+. |.  +++|+|++++||.+||++|+.. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+|+++
T Consensus        24 ~~m~I~Vk~~-g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           24 KIMKVTVKTP-KE--KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTL-SQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCEEEEEECS-SC--EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCT-GGGTCCTTCEEEEEECCSS
T ss_pred             CeEEEEEEeC-Cc--EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH-HHcCCCCCCEEEEEEcCCC
Confidence            4699999998 75  6889999999999999999999 9999999999999999999999 9999999999999999875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.58  E-value=4e-15  Score=127.87  Aligned_cols=75  Identities=27%  Similarity=0.373  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+.+|+  ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||..++.|+
T Consensus         1 M~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL-~~~~i~~~~~l~l~~~~~~~   76 (152)
T 3b08_A            1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCTTC
T ss_pred             CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccH-HHhccCCCCeeEEEeecccc
Confidence            99999999996  7789999999999999999999 9999999999999999999999 99999999999999998764

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.58  E-value=4.7e-15  Score=123.66  Aligned_cols=74  Identities=9%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-CCCCeEEEEee
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-APLSTLYLRQR   78 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-~~~sTL~L~lr   78 (371)
                      .|+|||+...++..+++|+|++++||++||++|++. |||+++|||+|+|+.|+|+.|| ++||| ++|+||||.+-
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL-~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETL-HSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBT-GGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcH-HHcCCCCCCCEEEEEEE
Confidence            499999999986568999999999999999999999 9999999999999999999999 99999 69999999873

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.56  E-value=1e-14  Score=117.66  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..||||||+.+|+  ++.++|++++||.+||++|+...  +++|+|+|+|++|+|+ .+| .+|+|.++++|||+++..+
T Consensus         6 ~~m~i~Vk~~~g~--~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~Gk~L~D~~~tL-~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLNDT--EELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQGRLLQDPARTL-SSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHSSST--TTTCEEEETTEECCCSSCBT-TTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHhhC--cCcEEEEECCEEccCCcCCH-HHcCCCCCCEEEEEECCCC
Confidence            4699999999996  67899999999999999999876  8999999999999999 999 9999999999999999876


Q ss_pred             CCC
Q 017480           82 GGG   84 (371)
Q Consensus        82 ~~~   84 (371)
                      ...
T Consensus        81 ~~~   83 (95)
T 1wia_A           81 AAV   83 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=8e-15  Score=118.05  Aligned_cols=71  Identities=15%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             ceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhc-c-CCCCCceEEEeC--CeeCCCCCCcccCCCCCCCCeEEE
Q 017480            4 KTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLS-L-DQSLSSLYFTLN--GKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~-~-gi~~~~q~Li~~--Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      .||||||++.|+....+| +|++++||.+||++|++ . |+|+++|||+|.  |++|+|+.+| ++|+|.+++||++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL-~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVL-QKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBT-TTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCH-HHcCCCCCCEEEE
Confidence            499999999987554578 99999999999999999 5 899999999987  9999999999 9999999999876

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.52  E-value=6.7e-15  Score=121.13  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      |+|+||+ .|+  ++.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|||.+++||+|+.+
T Consensus        29 i~I~Vk~-~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           29 LNIHIKS-GQD--KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV-ESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             CCEEEEC-SSC--CCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT-TTTTCCTTEEEEECCC
T ss_pred             EEEEEEE-CCE--EEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH-HHCCCCCCCEEEEEeC
Confidence            7899998 775  6788999999999999999999 9999999999999999999999 9999999999999764

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.52  E-value=2e-14  Score=140.04  Aligned_cols=76  Identities=24%  Similarity=0.312  Sum_probs=69.7

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ...||||||+++|+  +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| ++|+|.+++||||++|||
T Consensus       231 ~~~MqI~VKtl~Gk--~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TL-sdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          231 TGSMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             CCCEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT-GGGTCCTTCEEEEEC---
T ss_pred             CCeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCH-HHcCCCCCCEEEEEEeCC
Confidence            45799999999997  7789999999999999999999 9999999999999999999999 999999999999999986

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=3.1e-14  Score=116.14  Aligned_cols=79  Identities=14%  Similarity=0.235  Sum_probs=74.2

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..|||+||+++|+  ++.+.|..++++..|+..++++ |++++++||+|+|++|+++.|+ .+|+++++++||+.++++|
T Consensus         6 ~~i~ikVk~~~g~--~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp-~dl~medgD~Idv~~~~~G   82 (94)
T 2io1_B            6 DHINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTG   82 (94)
T ss_dssp             CEEEEEEECTTSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCT-TTTTCCTTCEEEEEECCEE
T ss_pred             CeEEEEEECCCCC--EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEeccC
Confidence            4599999999997  6778888899999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             CCC
Q 017480           82 GGG   84 (371)
Q Consensus        82 ~~~   84 (371)
                      |++
T Consensus        83 G~~   85 (94)
T 2io1_B           83 GVP   85 (94)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            854

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=9.9e-15  Score=120.59  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe--CCeeCCCCCCcccCCCCCCCCeEEEEee-
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL--NGKILDESTPLFKNPQIAPLSTLYLRQR-   78 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~--~Gk~L~D~~tL~~~~~I~~~sTL~L~lr-   78 (371)
                      ..||+|++...|+  +++|++++++||++||++|+++ |||+++|+|+|  +|+ |+|+.+| .+|+|++++||||+++ 
T Consensus         7 ~~m~~~~vk~~Gk--~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tL-s~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            7 GRMLDFRVEYRDR--NVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVL-KSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CCEEEEEEECSSC--EEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBH-HHHCCCSEEEEEECCSS
T ss_pred             cceEEEEEEeCCe--EEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCH-HHcCCCCCCEEEEEecC
Confidence            3599999999997  7788898999999999999999 99999999997  676 9999999 9999999999999887 


Q ss_pred             ec
Q 017480           79 VF   80 (371)
Q Consensus        79 L~   80 (371)
                      +-
T Consensus        83 ~~   84 (100)
T 2dzm_A           83 LP   84 (100)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.50  E-value=2.2e-14  Score=115.29  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=65.3

Q ss_pred             cceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhcc-CCCCCceEEE---eCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLSL-DQSLSSLYFT---LNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~~-gi~~~~q~Li---~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      ..|||+||. .|+  +++| ++++++||.+||++|++. |||+++|+|+   |.|++|+|+.+| .+|+|.++++|+|.
T Consensus         6 ~~m~i~Vk~-~g~--~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L-~~~~i~~g~~l~l~   80 (90)
T 1v5t_A            6 SGLPIIVKW-GGQ--EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL-GALKLKPNTKIMMM   80 (90)
T ss_dssp             CSCCEEEEE-TTE--EEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBH-HHHTCCTTEEEEEE
T ss_pred             ceEEEEEEE-CCE--EEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCH-HHcCCCCCCEEEEE
Confidence            469999996 665  7889 999999999999999999 9999999999   999999999999 99999999999885

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=2.1e-14  Score=117.05  Aligned_cols=69  Identities=17%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             cceEEEEEcCCCCeeeE-EEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTL-TVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~-~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      ..|||+||. .|+  ++ .|++++++||.+||++|++. |||+++|+|+|.|++|+|+ +| .+|+|.++++|+|+
T Consensus         6 ~~m~i~Vk~-~g~--~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL-~~~~I~~g~~i~l~   76 (96)
T 1wgg_A            6 SGYSVTVKW-GKE--KFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DW-GNIKMKNGMTVLMM   76 (96)
T ss_dssp             CEEEEEEEE-TTE--EEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CC-CSCCCCSSCEEECC
T ss_pred             cEEEEEEEE-CCE--EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CH-HHCCCCCCCEEEEE
Confidence            469999996 564  77 58898999999999999999 9999999999999999999 99 99999999999883

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.47  E-value=7.2e-14  Score=112.04  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCC-----CCHHHHHHHHhcc-CCCCCceEEEeCCeeCCC-CCCcccCCCCCCCCeEE
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQF-----ETLNHLKRSLLSL-DQSLSSLYFTLNGKILDE-STPLFKNPQIAPLSTLY   74 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~-----~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D-~~tL~~~~~I~~~sTL~   74 (371)
                      ...|+|+||+ .|+  +++|+++++     +||.+||++|++. |+|+++|+|+|.|++|.| +.+| .+|+|.++++||
T Consensus         5 ~~~~~v~Vk~-~~~--~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L-~~~~i~~g~~i~   80 (92)
T 1wxv_A            5 SSGLTVTVTH-SNE--KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPL-SALGIQDGCRVM   80 (92)
T ss_dssp             CSSEEEEEEC-SSS--EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBH-HHHTCCSSEEEE
T ss_pred             CCeEEEEEEE-CCE--EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccH-HHCCCCCCCEEE
Confidence            4579999999 465  567888875     9999999999999 999999999999999988 6689 999999999999


Q ss_pred             EEee
Q 017480           75 LRQR   78 (371)
Q Consensus        75 L~lr   78 (371)
                      |+.+
T Consensus        81 l~~~   84 (92)
T 1wxv_A           81 LIGK   84 (92)
T ss_dssp             EESC
T ss_pred             EEec
Confidence            9764

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.45  E-value=1.3e-13  Score=114.23  Aligned_cols=75  Identities=13%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCC---CeeeEEEE--------cCCC-CCHHHHHHHHhcc---CCCCCc-eEEEeCCeeCCCCCCcccCCCC
Q 017480            4 KTQIFIKSPSN---SLTTLTVG--------ANQF-ETLNHLKRSLLSL---DQSLSS-LYFTLNGKILDESTPLFKNPQI   67 (371)
Q Consensus         4 ~MQIFVk~~~g---~~~t~~l~--------v~~~-~TV~~lK~~i~~~---gi~~~~-q~Li~~Gk~L~D~~tL~~~~~I   67 (371)
                      .|||+||+.++   .  +++|+        |+++ +||.+||++|+..   |+|+++ |+|+|+|++|+|+.+| .+|+|
T Consensus        12 ~~~i~Vk~~~~~~~~--~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL-~~y~i   88 (107)
T 1x1m_A           12 DWHLAVKLADQPLAP--KSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTL-DFYGI   88 (107)
T ss_dssp             SCCEEEEETTCTTSC--CEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBH-HHHTC
T ss_pred             ceEEEEEeCCCCCcc--EEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcH-HHcCC
Confidence            49999999988   5  56777        5554 9999999999976   699999 9999999999999999 99999


Q ss_pred             CCCCeEEEEeeecC
Q 017480           68 APLSTLYLRQRVFG   81 (371)
Q Consensus        68 ~~~sTL~L~lrL~G   81 (371)
                      .+++||||++|...
T Consensus        89 ~~g~~i~lv~~~~~  102 (107)
T 1x1m_A           89 QPGSTVHVLRKSWS  102 (107)
T ss_dssp             CTTCEEEEEESSCC
T ss_pred             CCCCEEEEEeCCCC
Confidence            99999999998754

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.44  E-value=1.9e-13  Score=108.72  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      +|+++.+|+  ++.+++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.++++|+|..
T Consensus        14 ~~~~~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~l~l~~   82 (85)
T 2kd0_A           14 KLTVKFGGK--SIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTL-KQSDVGSGAKLMLMA   82 (85)
T ss_dssp             EEEEEETTE--EEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBT-TTTTCCTTEEEEEEC
T ss_pred             EEEEEECCE--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCH-HHCCCCCCCEEEEEE
Confidence            567777886  7789999999999999999999 9999999999999999999999 999999999999864

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.43  E-value=1.7e-13  Score=136.57  Aligned_cols=79  Identities=20%  Similarity=0.306  Sum_probs=73.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc---c-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeE-EEEe
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS---L-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTL-YLRQ   77 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~---~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL-~L~l   77 (371)
                      ..|+||||+++|+  +++|+|++++||.+||.+|+.   + |||+++|+|+|+|+.|+|+.+| .+|+|.++++| +|++
T Consensus         6 ~~M~I~VKtl~Gk--~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL-~dygI~~gstIv~lv~   82 (368)
T 1oqy_A            6 SAVTITLKTLQQQ--TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI-RDYRIDEKNFVVVMVT   82 (368)
T ss_dssp             CCCCEEEEETTTE--EEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBT-TTTCCCTTSCEEEEEE
T ss_pred             ceEEEEEEeCCCC--EEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCH-HHcCCCCCCEEEEEEe
Confidence            4699999999996  788999999999999999999   6 7999999999999999999999 99999999999 8999


Q ss_pred             eecCCCC
Q 017480           78 RVFGGGG   84 (371)
Q Consensus        78 rL~G~~~   84 (371)
                      |++|+..
T Consensus        83 k~~~~~~   89 (368)
T 1oqy_A           83 KTKAGQG   89 (368)
T ss_dssp             CCCSSSC
T ss_pred             cCCCCCC
Confidence            9998754

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=6.4e-13  Score=107.81  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=73.4

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .|+|+||+++|+  .+.+.|..++++..|+..++++ |++++++||+|+|++|.++.|. +++++.++++|++.++++||
T Consensus         5 ~i~ikVk~~~g~--~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp-~dl~medgD~Idv~~~q~gg   81 (91)
T 2io0_B            5 HINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTGG   81 (91)
T ss_dssp             EEEEEEECTTSC--EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECCCCC
T ss_pred             eEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEeccCC
Confidence            499999999997  6778888899999999999999 9999999999999999999999 99999999999999999998


Q ss_pred             CC
Q 017480           83 GG   84 (371)
Q Consensus        83 ~~   84 (371)
                      ++
T Consensus        82 ~~   83 (91)
T 2io0_B           82 VY   83 (91)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.40  E-value=1.8e-13  Score=113.55  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             cceEEEEEcCCCCeeeEEEEcC-CCCCHHHHHHHHhcc-CCCCCceEEEeCCe-----------e----CCCCCCcccCC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGAN-QFETLNHLKRSLLSL-DQSLSSLYFTLNGK-----------I----LDESTPLFKNP   65 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~-~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk-----------~----L~D~~tL~~~~   65 (371)
                      +.|+|+||+.+|.   ..|+|+ +++||.+||++|++. |||+++|+|+|.|+           +    ++|+.+| ++|
T Consensus         6 ~~M~irvrs~~G~---~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL-~~~   81 (107)
T 1wf9_A            6 SGTMLRVRSRDGL---ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRI-SSL   81 (107)
T ss_dssp             CCEEEEEECSSCE---EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBG-GGT
T ss_pred             CeEEEEEECCCCC---EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCH-HHC
Confidence            3499999999995   468888 899999999999999 99999999999999           4    5889999 999


Q ss_pred             CCCCCCeEEEEee
Q 017480           66 QIAPLSTLYLRQR   78 (371)
Q Consensus        66 ~I~~~sTL~L~lr   78 (371)
                      ||.++++|||...
T Consensus        82 gi~~G~~L~l~~~   94 (107)
T 1wf9_A           82 NLAHGSMVYLAYE   94 (107)
T ss_dssp             CCCTTCEEECCCS
T ss_pred             CCCCCCEEEEEeC
Confidence            9999999998654

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.40  E-value=1.2e-13  Score=112.21  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      ..|+|+||. .++  ++.|++++++||.+||++|++. |||+++|+|+|.|++|+| .+| .+|+|.++++|+|+.
T Consensus        16 ~~~~i~Vk~-~g~--~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL-~~~~i~~g~~i~lv~   86 (95)
T 1v86_A           16 ELVDLKIIW-NKT--KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTL-REIKVTSGAKIMVVG   86 (95)
T ss_dssp             CCEEEEEEE-TTE--EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBH-HHHCCCTTEEEEECC
T ss_pred             ceEEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcH-HHCCCCCCCEEEEEe
Confidence            359999994 564  7889999999999999999999 999999999999999954 599 999999999999853

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.39  E-value=4.9e-13  Score=109.22  Aligned_cols=72  Identities=13%  Similarity=0.070  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeC--Ce---eC-CCCCCcccCCCCCCCCeEEEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLN--GK---IL-DESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~--Gk---~L-~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .+.|+|++..+.-+++++++++++||++||++|+.. |||+++|||+|.  |+   +| +|+.+| ++|+|++++||+|+
T Consensus        15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL-~~Y~i~~gstihlv   93 (95)
T 2kjr_A           15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQL-GYYANSDGLRLHVV   93 (95)
T ss_dssp             EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBH-HHHCCSSSCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCH-hHCCcCCCCEEEEE
Confidence            478999987775457888899999999999999999 999999999998  45   56 899999 99999999999985

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=1.4e-12  Score=108.44  Aligned_cols=81  Identities=14%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..|+|+|++++|.  .+.+.|..++++..|+..++++ |++++++||+|+|++|.++.|+ .+|++..+++||+.++++|
T Consensus        23 ~~I~IkVk~~~g~--~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp-~dl~medgD~Idv~~~q~G   99 (104)
T 1wz0_A           23 DHINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTS   99 (104)
T ss_dssp             CCEEEEEECSSSC--EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCT-TTTTCCTTEEEEECCCCCC
T ss_pred             CeEEEEEECCCCC--EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEeccC
Confidence            3699999999996  6788888899999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             CCCCC
Q 017480           82 GGGDG   86 (371)
Q Consensus        82 ~~~~~   86 (371)
                      |+..|
T Consensus       100 G~~~~  104 (104)
T 1wz0_A          100 GPSSG  104 (104)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            87654

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.33  E-value=3.6e-12  Score=103.57  Aligned_cols=77  Identities=14%  Similarity=0.262  Sum_probs=69.7

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..|+|+|++++|.  .+.+.|..++++..|+..++++ |++++++||+|+|++|.++.|+ .+|++..+++||+.++++|
T Consensus        16 ~~i~ikV~~~~g~--~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp-~dl~medgD~Idv~~~q~G   92 (93)
T 2d07_B           16 DHINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTG   92 (93)
T ss_dssp             CEEEEEEECTTSC--EEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECC--
T ss_pred             CeEEEEEECCCCC--EEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCH-HHcCCCCCCEEEEEeeccC
Confidence            3599999999996  6678888899999999999999 9999999999999999999999 9999999999999999999


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        93 G   93 (93)
T 2d07_B           93 G   93 (93)
T ss_dssp             -
T ss_pred             C
Confidence            7

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3.2e-12  Score=108.31  Aligned_cols=74  Identities=19%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             cceEEEEE-cCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            3 SKTQIFIK-SPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         3 ~~MQIFVk-~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      +.|.|.|+ ...++  .++++++++.||.+||+.|+.. ++|+++|+|+|+||.|.|+.|| .+|||.++.||||+++=
T Consensus        14 ~~itvkv~l~~~~~--k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL-~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           14 SLATVKVVLIPVGQ--EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETL-VQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             SCEEEEEEETTTCC--EEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCH-HHHSCCSSCEEEEEEEE
T ss_pred             ccEEEEEEEcCCCc--EEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchH-HHcCCCCCCEEEEEEec
Confidence            34788888 66675  5788888899999999999999 9999999999999999999999 99999999999999874

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.30  E-value=5e-12  Score=101.34  Aligned_cols=71  Identities=8%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe-------CCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL-------NGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~-------~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      -|.|-.-....+.+.+.+++++||.+||++|+.. |||+++|||+|       .|+.|+|+.+| ++|+|++++||||+-
T Consensus         4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL-~~Y~i~~g~~ihlvd   82 (86)
T 4b6w_A            4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQL-GYYQCRDEFVIHVVD   82 (86)
T ss_dssp             EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBG-GGGTCCTTCEEEEEE
T ss_pred             EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCH-HHCCCCCCCEEEEEe
Confidence            3455432222245677788899999999999999 99999999996       69999999999 999999999999974

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.30  E-value=2.5e-12  Score=105.46  Aligned_cols=71  Identities=17%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCe---e---C-CCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGK---I---L-DESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk---~---L-~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .-|+|+.-......+++++++++||++||++|+.. |||+++|||+|.|+   +   | +|+.+| ++|+|++++||||+
T Consensus        15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL-~~Y~I~~g~~Ihlv   93 (97)
T 2kj6_A           15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPL-GFFSPFDGFRLHII   93 (97)
T ss_dssp             EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCH-HHHCCCSCCEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCH-HHCCCCCCCEEEEE
Confidence            56888875554356889999999999999999999 99999999999984   3   4 889999 99999999999985

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.26  E-value=1.2e-11  Score=104.83  Aligned_cols=75  Identities=17%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC---e---eC-CCCCCcccCCCCCCCCe
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG---K---IL-DESTPLFKNPQIAPLST   72 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G---k---~L-~D~~tL~~~~~I~~~sT   72 (371)
                      |-..+.|+|+.-.+. ..+++++++++||++||++|+.. |||+++|||+|.|   +   +| +|+.+| ++|||++++|
T Consensus         3 m~~~v~l~V~~~~~~-~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL-~~y~i~~g~~   80 (122)
T 1t0y_A            3 MTEVYDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSL-KDLGVRDGYR   80 (122)
T ss_dssp             CCCEEEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBT-TTTTCCSSEE
T ss_pred             CCCEEEEEEEECCCC-ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCH-HHCCCCCCCE
Confidence            667799999986653 35788888899999999999999 9999999999987   4   44 789999 9999999999


Q ss_pred             EEEEe
Q 017480           73 LYLRQ   77 (371)
Q Consensus        73 L~L~l   77 (371)
                      |||..
T Consensus        81 ihvvd   85 (122)
T 1t0y_A           81 IHAVD   85 (122)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99875

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.25  E-value=1e-11  Score=100.56  Aligned_cols=70  Identities=20%  Similarity=0.150  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC---ee----CCCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG---KI----LDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G---k~----L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +-|+|+.-... ..+++++++++||++||++|+.. |||+++|||+|.|   ++    |+|+.+| ++|+|++++||||.
T Consensus         8 v~l~I~~~~~~-~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL-~~y~i~~g~~l~v~   85 (95)
T 1v6e_A            8 VMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALL-GSYPVDDGCRIHVI   85 (95)
T ss_dssp             EEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBT-TSSSCCTTCEEEEB
T ss_pred             EEEEEEECCCC-eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCH-hHCCCCCCCEEEEE
Confidence            67899986553 35789999999999999999999 9999999999987   54    4899999 99999999999985

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.24  E-value=6.7e-12  Score=99.76  Aligned_cols=68  Identities=13%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeC--CeeCC---CCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLN--GKILD---ESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~--Gk~L~---D~~tL~~~~~I~~~sTL~L~   76 (371)
                      |+|+||+.+|+   ..++ +++++||.+||++|++. |||+++|+|+|+  |++|+   |+.+| .+|||.++++|+|.
T Consensus         1 m~i~vr~~~G~---~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL-~~~gl~~g~~l~v~   75 (86)
T 2kzr_A            1 WRVRCKAKGGT---HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL-GDLPIQSGDMLIVE   75 (86)
T ss_dssp             CCEEEEETTEE---EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBT-TTSSCCTTCEEECC
T ss_pred             CEEEEEcCCCC---EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCH-HHcCCCCCCEEEEE
Confidence            89999999995   3477 88899999999999999 999999999998  48884   68899 99999999999885

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.23  E-value=2e-11  Score=101.78  Aligned_cols=76  Identities=12%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..|+|+|++ +|.  .+.+.+..++++..|+..++++ |++++++||+|+|++|.++.|. .++++..+++|++.++++|
T Consensus        30 ~~I~IkV~~-~g~--~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp-~dl~medgD~Idv~~~q~G  105 (106)
T 2eke_C           30 THINLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIG  105 (106)
T ss_dssp             SEEEEEEEC-SSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECC--
T ss_pred             CeEEEEEec-CCc--EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCH-HHcCCCCCCEEEEEeeccc
Confidence            359999999 996  6677788899999999999999 9999999999999999999999 9999999999999999998


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus       106 G  106 (106)
T 2eke_C          106 G  106 (106)
T ss_dssp             -
T ss_pred             C
Confidence            7

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.21  E-value=1.2e-11  Score=103.87  Aligned_cols=78  Identities=13%  Similarity=0.119  Sum_probs=72.5

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .|+|+|++++|.  .+.+.|..++++..|+..++++ |++++++||+|.|++|.++.|+ .+|++.++++|++.++++||
T Consensus        26 ~I~IkVk~~~g~--~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp-~dl~mEDgD~Idv~~~q~Gg  102 (110)
T 2k8h_A           26 LVAVKVVNADGA--EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTP-EELGMEDDDVIDAMVEQTGG  102 (110)
T ss_dssp             CEEEEEEETTSC--CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHH-HHHHCSSEEEEEEECCCCCC
T ss_pred             eEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEcccCc
Confidence            599999999997  6788888899999999999999 9999999999999999999999 99999999999999999997


Q ss_pred             CC
Q 017480           83 GG   84 (371)
Q Consensus        83 ~~   84 (371)
                      -.
T Consensus       103 ~~  104 (110)
T 2k8h_A          103 LE  104 (110)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.18  E-value=8.1e-11  Score=90.85  Aligned_cols=70  Identities=11%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .|+|+|++++|+  .+.+.+..++++..|+..++++ |++++++||+|+|++|.++.|. +++++.++++|++.
T Consensus         1 ~i~lkV~~~~g~--~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp-~~l~medgD~Idv~   71 (72)
T 1wm3_A            1 HINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVF   71 (72)
T ss_dssp             CEEEEEECTTSC--EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCT-TTTTCCTTEEEEEE
T ss_pred             CEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCH-HHcCCCCCCEEEEE
Confidence            389999999997  7788888899999999999999 9999999999999999999999 99999999999985

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.04  E-value=6e-10  Score=87.66  Aligned_cols=72  Identities=11%  Similarity=0.083  Sum_probs=65.9

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      ..|+|+|++++|+ ..+.+.+..++++..|+..++++ |++++++||+|+|++|.++.|. .++++.++++||+.
T Consensus         6 ~~i~ikV~~~~g~-~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp-~~l~medgD~Idv~   78 (79)
T 3a4r_A            6 QELRLRVQGKEKH-QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELP-ADLGLESGDLIEVW   78 (79)
T ss_dssp             CCEEEEEECSSTT-CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCH-HHHTCCTTCEEEEE
T ss_pred             CEEEEEEEeCCCC-EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEe
Confidence            4599999999994 25678888899999999999999 9999999999999999999999 99999999999974

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.01  E-value=2.4e-10  Score=111.86  Aligned_cols=70  Identities=13%  Similarity=0.206  Sum_probs=62.7

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEE---eCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFT---LNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li---~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +.|.|.||. .|+  +++|++++++||++||++|+++ |||+++|+|+   |.|++|.|+.+| ++|+|++++||+|+
T Consensus         4 ~~i~i~Vk~-~g~--~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L-~~~~ik~g~~l~L~   77 (320)
T 3shq_A            4 KEVVVIVKW-SGK--EYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKI-SALELKPNFKLMMV   77 (320)
T ss_dssp             CEEEEEEEE-TTE--EEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBT-TSSCCC--CEEEEE
T ss_pred             ceEEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccH-HHcCCCCCCEEEEE
Confidence            358999996 675  7889999999999999999999 9999999999   899999999999 99999999999885

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.89  E-value=4.8e-09  Score=96.46  Aligned_cols=79  Identities=14%  Similarity=0.271  Sum_probs=72.6

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .++|+|+ ++|.  .+.+.+..++++..|+...+++ |++++++||+|+|++|.++.|. .++++.++++|++.++++||
T Consensus        29 ~I~LkV~-~~g~--~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP-~dL~MEdgD~Idv~~~q~gg  104 (200)
T 3pge_A           29 HINLKVS-DGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG  104 (200)
T ss_dssp             CEEEEEE-CSSC--EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECCSCC
T ss_pred             eEEEEEe-cCCC--EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEeccCcC
Confidence            4899998 5886  6778888899999999999999 9999999999999999999999 99999999999999999999


Q ss_pred             CCCC
Q 017480           83 GGDG   86 (371)
Q Consensus        83 ~~~~   86 (371)
                      +.+|
T Consensus       105 ~kd~  108 (200)
T 3pge_A          105 GGET  108 (200)
T ss_dssp             C-CC
T ss_pred             cCce
Confidence            8776

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.66  E-value=8.5e-08  Score=81.00  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=68.9

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      .++|.|++++|.  .+.+.+..++++..|+...+++ |++++++||+|+|.+|.++.|. .++++.++++|++.++-.|
T Consensus        40 ~I~LKV~~qdg~--ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP-~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           40 YIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             EEEEEEECTTSC--EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCT-TTTTCCTTCEEEEEECCCC
T ss_pred             eEEEEEEcCCCC--EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCH-HHcCCCCCCEEEEEeeccC
Confidence            589999999997  4667777889999999999999 9999999999999999999999 9999999999999987665

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.63  E-value=8.7e-08  Score=77.49  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             eEEEEEc---CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC-------eeC-CCCCCcccCCCCCCCCe
Q 017480            5 TQIFIKS---PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG-------KIL-DESTPLFKNPQIAPLST   72 (371)
Q Consensus         5 MQIFVk~---~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G-------k~L-~D~~tL~~~~~I~~~sT   72 (371)
                      +.|+|+.   .+|.  .+.+.+..+.||++||.+|+.. |+|+..|+|.|.+       .+| +|+.+| +.|+|.++++
T Consensus        10 v~l~I~~~~~~~~~--~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L-~~y~i~~G~~   86 (97)
T 1wjn_A           10 LTLKIKCSNQPERQ--ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPL-QFYSVENGDC   86 (97)
T ss_dssp             EEEEEEESSCSSSC--CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBS-GGGTCCTTCE
T ss_pred             EEEEEEecCCCCCc--EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccH-hhcCCCCCCE
Confidence            5788885   4554  5567777788999999999999 9999999999873       336 577889 9999999999


Q ss_pred             EEEEe
Q 017480           73 LYLRQ   77 (371)
Q Consensus        73 L~L~l   77 (371)
                      |||..
T Consensus        87 I~V~d   91 (97)
T 1wjn_A           87 LLVRW   91 (97)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99875

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.55  E-value=8.2e-08  Score=87.74  Aligned_cols=77  Identities=12%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .++|+|+ ++|.  .+.+.|..++++..|+...+++ |+++.+++|+|+|++|.++.|. .++++.++++|++.++++||
T Consensus        57 ~InLKVk-~dG~--eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTP-eDLdMEDGDtIDV~leQ~GG  132 (207)
T 3tix_A           57 HINLKVS-DGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTP-EDLDMEDNDIIEAHREQIGG  132 (207)
T ss_dssp             EEEEEEE-CSSC--EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCT-TTTTCCTTEEEEECCCCCTT
T ss_pred             cEEEEEe-cCCC--EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCH-HHcCCCCCCEEEEEEeccCC
Confidence            4899997 5886  5677788899999999999999 9999999999999999999999 99999999999999999999


Q ss_pred             CC
Q 017480           83 GG   84 (371)
Q Consensus        83 ~~   84 (371)
                      +.
T Consensus       133 ~~  134 (207)
T 3tix_A          133 LP  134 (207)
T ss_dssp             GG
T ss_pred             Cc
Confidence            75

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.43  E-value=3e-08  Score=91.70  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=1.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .|+|+| +++|.  .+.+.+..++++..|+...+++ |++++++||+|+|++|.++.|. .++++.++++|++.++.+||
T Consensus        21 ~InLKV-~qdGs--eV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTP-adL~MEDGDtIDV~leQ~GG   96 (227)
T 3v7o_A           21 HINLKV-SDGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG   96 (227)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             eEEEEE-eCCCC--EEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCH-HHcCCCCCCEEEEEecccCC
Confidence            589999 89996  6677888899999999999999 9999999999999999999999 99999999999999999998


Q ss_pred             C
Q 017480           83 G   83 (371)
Q Consensus        83 ~   83 (371)
                      +
T Consensus        97 ~   97 (227)
T 3v7o_A           97 L   97 (227)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.43  E-value=2.1e-07  Score=77.36  Aligned_cols=114  Identities=18%  Similarity=0.343  Sum_probs=89.3

Q ss_pred             ccccCCCCCCCCCe------eeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCC
Q 017480          120 CNCALSNEPLREPC------VIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPI  193 (371)
Q Consensus       120 ~~CaLS~~PL~~PI------V~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPV  193 (371)
                      ..|++.++.+.+|+      |.-.=|+.|-++-|.+||..+..=|.....-..+++..+.+.          ...+.|||
T Consensus         8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~----------~~~~~C~i   77 (133)
T 4ap4_A            8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG----------SGTVSCPI   77 (133)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS----------SSSCBCTT
T ss_pred             CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC----------CCCCCCCC
Confidence            56999999998882      566889999999999999876544555566666777775442          23457999


Q ss_pred             cccccCCc---eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEec
Q 017480          194 TGLEFNGK---YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       194 T~~e~ng~---~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      +...|...   .+.+.+-+|||+|...++.+.  ....||+|..++..+|++++.
T Consensus        78 C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           78 CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            99888642   345567799999999999986  367999999999999998873

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.39  E-value=2e-07  Score=73.51  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-----CCCCCCcccCCCCCCCCeEE
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-----LDESTPLFKNPQIAPLSTLY   74 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-----L~D~~tL~~~~~I~~~sTL~   74 (371)
                      |.+.|-|=||+.+|   +..|++++++||.+|+.+|++. +++.+.|.|.++-.|     +.++.+| ++.||..|++|+
T Consensus         1 ~~~~m~lRvrs~~G---~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l-~~lgl~hGd~l~   76 (80)
T 2pjh_A            1 MAESIIIRVQSPDG---VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSL-HLLKIKHGDLLF   76 (80)
T ss_dssp             -CCCCCCEEECSSE---EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTT-TTTCCCTTCCEE
T ss_pred             CCCcEEEEEECCCC---CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCH-HHcCCCCCCEEE
Confidence            77889999999999   5788999999999999999998 999888888766665     4578899 999999999998


Q ss_pred             EE
Q 017480           75 LR   76 (371)
Q Consensus        75 L~   76 (371)
                      |.
T Consensus        77 l~   78 (80)
T 2pjh_A           77 LF   78 (80)
T ss_dssp             C-
T ss_pred             Ee
Confidence            75

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.27  E-value=5.8e-07  Score=67.32  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeee
Q 017480          120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLS  175 (371)
Q Consensus       120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt  175 (371)
                      ..|+||++++.+||++-..|+.|++++|.+||......+..+...+.+||+++++.
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~   59 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS   59 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence            67999999999996664789999999999999977667888999999999999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.23  E-value=8.8e-07  Score=66.33  Aligned_cols=55  Identities=13%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      .|+||||+..|.+-   |...+|||||..+++.+.  ....||+++++++..|+|+++-.
T Consensus         3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~   59 (61)
T 2bay_A            3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS   59 (61)
T ss_dssp             -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred             eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence            58999999999863   555589999999999997  35679999999999999999854

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.13  E-value=1.5e-06  Score=64.54  Aligned_cols=56  Identities=14%  Similarity=0.324  Sum_probs=45.6

Q ss_pred             eeEcCCccc-ccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceEEec
Q 017480          188 RFQCPITGL-EFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       188 ~~~CPVT~~-e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      .+.|||+.. .+.+....+++.+|||+|+..++.++   ....||+|..++...|+++.-
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~   62 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL   62 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence            357999999 77665554556799999999999998   246799999999999987753

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.97  E-value=1.4e-05  Score=61.05  Aligned_cols=52  Identities=15%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~  241 (371)
                      ...|.|||+...|..-   |.+ +|||+|+..++.+.-   ...||+|+.++...++++
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~   60 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             cccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence            3468999999999753   333 899999999999874   468999999999887665

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.89  E-value=7.8e-06  Score=59.69  Aligned_cols=55  Identities=22%  Similarity=0.512  Sum_probs=46.0

Q ss_pred             eeEcCCcccccCCc---eeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480          188 RFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       188 ~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L  242 (371)
                      .+.|||+...+...   .+.+++.+|||+|...++.+.-  ...||+|..++...|++.|
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence            46799999988642   3556777999999999999873  5789999999999999876

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.86  E-value=1.7e-05  Score=64.66  Aligned_cols=40  Identities=13%  Similarity=0.099  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC
Q 017480           17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD   56 (371)
Q Consensus        17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~   56 (371)
                      ..+.+.+.+++||..||++|++. |||+++|+|+|+|++|.
T Consensus        24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~   64 (94)
T 4efo_A           24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV   64 (94)
T ss_dssp             EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred             eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence            35678888899999999999999 99999999999999875

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=97.82  E-value=1.3e-05  Score=63.28  Aligned_cols=52  Identities=13%  Similarity=0.052  Sum_probs=42.8

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~  241 (371)
                      ...|.||||+..|..-   |. -+|||+|+..|+...-  ...||+|+.++...|+++
T Consensus        12 p~~~~CpI~~~~m~dP---V~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p   65 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP   65 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             chheECcccCchhcCC---eE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence            3469999999999862   33 4699999999999873  578999999999887665

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.78  E-value=2.2e-05  Score=63.79  Aligned_cols=67  Identities=13%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc-----CCCCCCCCCcCCCceEEecCChHHHHHHHHHHHH
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS-----SSCLVCHEEFGEMDKILINGNEEEISVLRERMEE  258 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~-----~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~  258 (371)
                      .+.|||+...|..-..    -+|||+|+..|+...-.     ..||+|..++...+++....-..-++.+.++++.
T Consensus        21 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~~   92 (112)
T 1jm7_A           21 ILECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICA   92 (112)
T ss_dssp             HTSCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHH
T ss_pred             CCCCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHHH
Confidence            5689999998865322    48999999999998743     3799999999988877655555566666666543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=97.77  E-value=2.3e-05  Score=63.73  Aligned_cols=51  Identities=8%  Similarity=-0.049  Sum_probs=42.4

Q ss_pred             ceeEcCCcccccCCceeEEEEeccC-ccccHHHHHHhh--cCCCCCCCCCcCCCceEE
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCG-HVLSTKALKEVK--SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG-~V~Se~alkevk--~~~CpvCg~~f~~~DiI~  241 (371)
                      ..|.||||...|..-   |. -+|| |+|+..||...-  ...||+|+.++...|+++
T Consensus        21 ~~~~CpI~~~~m~dP---V~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p   74 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDP---VV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP   74 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred             HhcCCcCccccccCC---eE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence            469999999999762   32 4899 999999999873  568999999999888764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=97.74  E-value=2.3e-05  Score=64.03  Aligned_cols=64  Identities=13%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHH
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEK  260 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~  260 (371)
                      ...|.||||+..|..   =|.+ +|||+|+..|+...-  ...||+|+.++...|+++-.       .|+..++.-.
T Consensus        27 p~~~~CpI~~~~m~d---PV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~-------~Lk~~I~~~~   92 (100)
T 2kre_A           27 PDEFRDPLMDTLMTD---PVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP-------ELKEQIQAWM   92 (100)
T ss_dssp             STTTBCTTTCSBCSS---EEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH-------HHHHHHHHHH
T ss_pred             cHhhCCcCccCcccC---CeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH-------HHHHHHHHHH
Confidence            346999999999976   2333 699999999999873  56899999999988876532       3555555444

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.72  E-value=1.3e-05  Score=59.90  Aligned_cols=57  Identities=21%  Similarity=0.496  Sum_probs=47.0

Q ss_pred             CceeEcCCcccccCCc---eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEe
Q 017480          186 GIRFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~L  242 (371)
                      ...+.|||+...|...   .+.+++.+|||+|...++.++  ....||+|..++...|++.|
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence            4567899999988642   356677899999999999987  35799999999999888765

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.69  E-value=8.7e-05  Score=68.09  Aligned_cols=76  Identities=12%  Similarity=0.224  Sum_probs=68.5

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .+.|.|++ ++.  .+.+.+..++++..|+...+++ |++++++||+|.|+++.++.|. .+..+.++++|++....+||
T Consensus        21 ~i~ikv~~-~~~--~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tp-k~L~~ed~d~I~~~~eq~Gg   96 (209)
T 3uf8_A           21 HINLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG   96 (209)
T ss_dssp             EEEEEEEC-SSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCT-TTTTCCTTEEEEEECSCTTC
T ss_pred             cEEEEEEc-CCC--EEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCCh-HHhhhcccccchhhcccccc
Confidence            47899997 665  5567777789999999999999 9999999999999999999898 99999999999999999997


Q ss_pred             C
Q 017480           83 G   83 (371)
Q Consensus        83 ~   83 (371)
                      .
T Consensus        97 ~   97 (209)
T 3uf8_A           97 S   97 (209)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.67  E-value=0.00021  Score=56.40  Aligned_cols=71  Identities=11%  Similarity=0.189  Sum_probs=61.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      -+-+.+|+....  -+.+.+..+.||.+|=.....+ |||++ ..+|.|.|.+|+++.++ ++|.+.++..|++.+
T Consensus         9 ~~~~~~~~~~~~--dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp-~DlemeD~D~IDvmL   81 (82)
T 3goe_A            9 LITLLLRSSKSE--DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV-QSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEEESSSC--CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG-GGSSCCTTCEEEEEC
T ss_pred             HHHHhhhccCCC--CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh-hhhCCcCCceeeeee
Confidence            356777776553  5677888899999998888888 99999 99999999999999999 999999999998875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.66  E-value=2.9e-05  Score=59.37  Aligned_cols=59  Identities=15%  Similarity=0.363  Sum_probs=47.1

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      ...+.|||+...|.....++ +.+|||+|...++.++  ....||+|..++...++++..|.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~   73 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVR-QLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPG   73 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEE-ECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSS
T ss_pred             CCCCCCeeCCccccCCCCEE-EeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCC
Confidence            45678999999997655443 4489999999999987  35789999999999887765543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=4.6e-05  Score=57.58  Aligned_cols=54  Identities=13%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L  242 (371)
                      ...+.|||+...|..   -+.+.+|||+|+..++.+.-  ...||+|..++...|++..
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred             CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence            456889999998876   34556999999999999874  5789999999998887654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=2e-05  Score=61.21  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=44.1

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~DiI~  241 (371)
                      ...+.|||+...|....+..++.+|||+|+..++..+-     ...||+|..++...|+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~   73 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQ   73 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTT
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHH
Confidence            45678999999998655434455999999999999983     268999999998776533

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.61  E-value=3.8e-05  Score=69.36  Aligned_cols=53  Identities=11%  Similarity=-0.097  Sum_probs=42.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEe
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~L  242 (371)
                      ...|.||||+..|..   =|.+ +|||+|+..|+...-   ...||+|+.+|...|+|+-
T Consensus       104 p~~f~CPI~~elm~D---PV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN  159 (179)
T 2f42_A          104 PDYLCGKISFELMRE---PCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN  159 (179)
T ss_dssp             CGGGBCTTTCSBCSS---EEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred             cHhhcccCccccCCC---CeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence            457999999999986   2333 899999999999873   2369999999998887653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=7.8e-05  Score=57.47  Aligned_cols=47  Identities=23%  Similarity=0.554  Sum_probs=39.0

Q ss_pred             CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480          185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG  235 (371)
Q Consensus       185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~  235 (371)
                      ....+.|||+...|..-    ++.+|||+|+..++.++-  ...||+|..++.
T Consensus        12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            35578999999988652    346999999999999873  578999999996

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.55  E-value=1.1e-05  Score=80.00  Aligned_cols=75  Identities=12%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .++|.|++ +|.  .+.+.+..++++..|+...+++ |++++++||+|+|++|.++.|. .++++.++++|++.++.+||
T Consensus        21 ~I~LKV~~-~g~--~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP-~~L~MEDgD~Idv~~~Q~g~   96 (360)
T 3ix6_A           21 HINLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG   96 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEec-CCc--EEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCCh-HHcCCCccchhhhhhccCch
Confidence            37899997 554  5677888899999999999999 9999999999999999999999 99999999999999999988

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=6.7e-05  Score=60.13  Aligned_cols=53  Identities=28%  Similarity=0.519  Sum_probs=41.2

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--------cCCCCC--CCCC-cCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--------SSSCLV--CHEE-FGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--------~~~Cpv--Cg~~-f~~~DiI~  241 (371)
                      ...|.||||...|..   =|.+..|||+|+..||.+.-        ...||+  |... +...|+++
T Consensus         5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p   68 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ   68 (94)
T ss_dssp             SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred             CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence            457999999999986   45555699999999999873        248999  7666 77777653

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.50  E-value=6.2e-05  Score=53.44  Aligned_cols=49  Identities=20%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG  235 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~  235 (371)
                      ..+.|||+...+......+.+.+|||+|...++.++-  ...||+|..++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4567999999986555567778999999999999873  578999998874

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=9e-05  Score=55.62  Aligned_cols=50  Identities=20%  Similarity=0.382  Sum_probs=40.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCce
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~Di  239 (371)
                      ...+.|||+...|..   -+.+ +|||+|+..++.++-     ...||+|..++...|+
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            446789999998875   2333 999999999999985     2489999999988765

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.48  E-value=0.00018  Score=57.54  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEE
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~  241 (371)
                      .+.|||+...|..   -+.+.+|||+|+..++...-  ...||+|..++...|+.+
T Consensus        22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~   74 (99)
T 2y43_A           22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN   74 (99)
T ss_dssp             HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred             CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence            5789999999876   34446899999999999874  468999999998876543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=0.00011  Score=54.49  Aligned_cols=50  Identities=18%  Similarity=0.427  Sum_probs=41.4

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCce
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~Di  239 (371)
                      ...+.|||+...+.....    -+|||+|+..++.+.-   ...||+|..++..+|+
T Consensus        13 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             CcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            456899999998876432    3999999999999974   4589999999988775

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.45  E-value=8.7e-05  Score=64.84  Aligned_cols=58  Identities=14%  Similarity=0.287  Sum_probs=46.5

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecCCh
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILINGNE  246 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp~~  246 (371)
                      ...+.|||+...|..   -|.+.+|||+|+..|+..+-   ...||+|..++...+.+..|..-
T Consensus        52 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l  112 (165)
T 2ckl_B           52 HSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF  112 (165)
T ss_dssp             HHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHH
T ss_pred             CCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHH
Confidence            346799999998876   35566999999999999973   56799999999877776666543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.43  E-value=0.00019  Score=56.37  Aligned_cols=55  Identities=18%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             CceeEcCCcccccCCceeEEEEec-cCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRT-CGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILING  244 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~-CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp  244 (371)
                      ...+.|||+...|..-   |. -+ |||+|+..+|.+.-    ...||+|..+|...+.+..|.
T Consensus        11 ~~~~~C~IC~~~~~~p---~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~   70 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK   70 (92)
T ss_dssp             CTTTEETTTTEECSSC---EE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECH
T ss_pred             CcCCCCCCCChhhcCc---eE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCH
Confidence            4568999999998753   33 36 99999999999873    358999999985444444443

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.36  E-value=1.5e-05  Score=62.36  Aligned_cols=63  Identities=17%  Similarity=0.358  Sum_probs=49.1

Q ss_pred             CceeEcCCcccccCCc-eeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecCChHHH
Q 017480          186 GIRFQCPITGLEFNGK-YRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILINGNEEEI  249 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~-~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp~~ee~  249 (371)
                      ...+.|||+...++-. ..|. .-+|||.|+..++..+.   ...||+|.++|...+++..+++.||+
T Consensus         9 ~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~   75 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEEL   75 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCCSSC
T ss_pred             ccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCHHHH
Confidence            3457899999988532 2222 11499999999999985   46899999999999999888887765

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.35  E-value=0.00044  Score=56.47  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .+.|.|++++|. ..+.+.+..++++..|....+++ |+++.+.+|+|.|.+|.++.|. .+.++.++.+|++.
T Consensus        25 ~I~LkV~~~dg~-~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP-~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           25 QLQLRVQGKEKH-QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELP-ADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEEEEESSSS-CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCH-HHHTCCTTEEEEEE
T ss_pred             eEEEEEEcCCCC-EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEe
Confidence            478999999994 24566777788999999998888 9999999999999999999999 99999999999873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.34  E-value=0.00011  Score=67.98  Aligned_cols=52  Identities=12%  Similarity=-0.022  Sum_probs=41.6

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~  241 (371)
                      ...|.||||...|..-   | +-+|||+|+..||...-   ...||+|+.++...++|+
T Consensus       206 ~~~~~c~i~~~~~~dP---v-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~  260 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP  260 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---E-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred             CcccCCcCcCCHhcCC---e-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence            3468999999999762   3 25799999999999873   334999999999887664

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.34  E-value=0.0002  Score=57.73  Aligned_cols=59  Identities=14%  Similarity=0.224  Sum_probs=45.4

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--c-CCCCCCCCCcCCCceEEecCChHHH
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--S-SSCLVCHEEFGEMDKILINGNEEEI  249 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~-~~CpvCg~~f~~~DiI~Lnp~~ee~  249 (371)
                      ..+.|||+...|..   -|.+-+|||+|+..+|.+.-  . ..||+|..+|...|++.. ..-+++
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~-~~~~~i   82 (100)
T 3lrq_A           21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC-RWAEEV   82 (100)
T ss_dssp             HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC-TTHHHH
T ss_pred             CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh-HHHHHH
Confidence            35789999999875   34447999999999999873  3 589999999998877654 434443

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=0.00031  Score=53.25  Aligned_cols=50  Identities=16%  Similarity=0.458  Sum_probs=39.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE  236 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~  236 (371)
                      .....|||+...|.....+ ...+|||+|...++..+  ....||+|..++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3456899999998765544 44579999999999987  46789999988865

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.32  E-value=9.9e-05  Score=54.48  Aligned_cols=51  Identities=22%  Similarity=0.563  Sum_probs=41.4

Q ss_pred             CceeEcCCcccccCCc---eeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCC
Q 017480          186 GIRFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGE  236 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~  236 (371)
                      ...+.|||+...|...   .+.+++.+|||+|...++.++-  ...||+|..+|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4567899999988642   3566778999999999999873  5789999998864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.31  E-value=6.6e-05  Score=56.11  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEecCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      ...+.|||+...+..     ++.+|||+|...++.++-  ...||+|..++...|.+.+.|.
T Consensus        13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~   69 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSS   69 (70)
T ss_dssp             CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCC
T ss_pred             CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCC
Confidence            345789999998876     456899999999999873  5789999999998887666553

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.27  E-value=0.00016  Score=54.41  Aligned_cols=51  Identities=22%  Similarity=0.261  Sum_probs=40.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKI  240 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI  240 (371)
                      ...+.|||+...+...   +. .+|||+|+..++.++-  ...||+|..++...+++
T Consensus        13 ~~~~~C~IC~~~~~~~---~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   65 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VS-LPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD   65 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EE-ETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred             CCCCCCccCCcccCCC---EE-ccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence            4568899999888653   33 3899999999999863  46899999999876654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.27  E-value=0.00026  Score=54.13  Aligned_cols=53  Identities=15%  Similarity=0.222  Sum_probs=42.2

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--------cCCCCCCCCCcCCCceEEe
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--------SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--------~~~CpvCg~~f~~~DiI~L  242 (371)
                      ...+.|||+...|..-.    +-+|||+|+..++..+-        ...||+|..++...|+.+-
T Consensus        17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN   77 (85)
T ss_dssp             CTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred             ccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence            34578999999887632    45899999999999862        4589999999998776653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.25  E-value=0.00014  Score=60.15  Aligned_cols=59  Identities=20%  Similarity=0.446  Sum_probs=48.1

Q ss_pred             ceeEcCCcccccCCc---eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480          187 IRFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      ..+.|||+...|...   .+.+++.+|||+|...++.+.  ....||+|.++|...++..+.-.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~   69 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG   69 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence            457899999988643   345566799999999999997  35689999999999998777643

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.23  E-value=0.00031  Score=57.10  Aligned_cols=48  Identities=17%  Similarity=0.348  Sum_probs=40.2

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM  237 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~  237 (371)
                      ..+.|||+...|..   -|.+.+|||+|+..|+.+.-  ...||+|..++...
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            45789999998875   35556999999999999874  47899999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.22  E-value=0.00043  Score=51.44  Aligned_cols=50  Identities=14%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE  236 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~  236 (371)
                      .....|||+...|..... +...+|||+|...++.++  ....||+|..++..
T Consensus        12 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCCCeeCCccccCCCc-EEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            456789999998865444 445589999999999987  35789999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00046  Score=65.79  Aligned_cols=53  Identities=23%  Similarity=0.502  Sum_probs=43.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCC--CCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLV--CHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~Cpv--Cg~~f~~~DiI~  241 (371)
                      ...+.||||...|..   =|.+..|||+|+..||.+.-    ...||+  |.+++...|+++
T Consensus       179 ~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p  237 (267)
T 3htk_C          179 KIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR  237 (267)
T ss_dssp             BCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred             ceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence            567899999999965   34456899999999999873    247999  999999888765

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.15  E-value=0.00043  Score=52.18  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=40.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM  237 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~  237 (371)
                      .....|||+...|.....++. .+|||+|...++.++-  ...||+|..++...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            345689999999976655544 4899999999999873  56899999998754

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.12  E-value=0.00023  Score=54.37  Aligned_cols=51  Identities=24%  Similarity=0.413  Sum_probs=40.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--------cCCCCCCCCCcCCCceE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--------SSSCLVCHEEFGEMDKI  240 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--------~~~CpvCg~~f~~~DiI  240 (371)
                      ...+.|||+...+..-.   . -+|||+|+..++.++-        ...||+|..++...|+.
T Consensus        17 ~~~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~   75 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPL---S-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR   75 (85)
T ss_dssp             CCCCCCTTTCSCCSSCB---C-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred             cCCCCCCCCCcccCCce---e-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence            34678999999987532   2 3899999999999862        46899999999987754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.11  E-value=0.00025  Score=53.87  Aligned_cols=54  Identities=17%  Similarity=0.279  Sum_probs=42.5

Q ss_pred             CceeEcCCcccccCCceeEEEEec-cCccccHHHHHHhhc----CCCCCCCCCcCCCceEEec
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRT-CGHVLSTKALKEVKS----SSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~-CG~V~Se~alkevk~----~~CpvCg~~f~~~DiI~Ln  243 (371)
                      ...+.|||+...|..-   |. -+ |||+|+..++.+.-.    ..||+|..++...|.+.-|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             CCCCCCcCCChHHhCC---eE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            4568999999988763   33 46 999999999998742    5899999998877766544

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=97.11  E-value=0.00066  Score=53.40  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=40.9

Q ss_pred             cccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCcee
Q 017480          115 RLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLIN  171 (371)
Q Consensus       115 ~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~  171 (371)
                      ..-....|.||++.+.+||+. .-|+.|.+.+|.+||.....-|..+...+..+|++
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p   65 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP   65 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             cCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence            334578999999999999766 58999999999999986433344444444444444

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.03  E-value=0.00032  Score=58.36  Aligned_cols=49  Identities=20%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCce
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~Di  239 (371)
                      ..+.|||+...|..-   |.+ +|||+|+..|+...-   ...||+|..++...+.
T Consensus        51 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~  102 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYA  102 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCC
T ss_pred             cCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCC
Confidence            357899999988752   333 999999999998873   3489999999987443

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=96.99  E-value=0.00011  Score=72.85  Aligned_cols=81  Identities=11%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      +.|.|++ ++.  .+.+.+..++++..|+...+++ |+++.+++|+|+|++|.++.|. .+.++.++.+|++.+..+||.
T Consensus        31 i~lkv~~-~~~--~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp-~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           31 INLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAP-EDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEec-CCc--EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCH-HHcCCCCCCEeeeeecccccc
Confidence            4567776 453  5667888899999999999999 9999999999999999999999 999999999999999999987


Q ss_pred             CCCccc
Q 017480           84 GDGGAT   89 (371)
Q Consensus        84 ~~~~si   89 (371)
                      .---..
T Consensus       107 n~~~~~  112 (389)
T 4da1_A          107 NLYFQA  112 (389)
T ss_dssp             ------
T ss_pred             ccceeE
Confidence            655433

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=96.99  E-value=0.00028  Score=53.55  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=39.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---------cCCCCCCCCCcCCCce
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---------SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---------~~~CpvCg~~f~~~Di  239 (371)
                      ...+.|||+...|..-.   . -+|||+|+..++.++-         ...||+|..++...|+
T Consensus        10 ~~~~~C~IC~~~~~~p~---~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l   68 (79)
T 2egp_A           10 QEEVTCPICLELLTEPL---S-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL   68 (79)
T ss_dssp             CCCCEETTTTEECSSCC---C-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred             ccCCCCcCCCcccCCee---E-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence            45689999999987632   2 3899999999999753         4589999999987664

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.96  E-value=0.0015  Score=52.68  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=63.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      .|-+.|-..+++  ..+|.|+++.|+.+|=+...++ |+.+++..|.|++++|+-+.++ --.||+++++|+|+..
T Consensus         9 ~m~v~Vl~~n~r--r~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpf-RlsgLpnnAkLELv~~   81 (90)
T 2al3_A            9 GSAVSVLAPNGR--RHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQW-RFANLPNNAKLEMVPV   81 (90)
T ss_dssp             -CCEEEECTTSC--EEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBH-HHHCCCSSCEEEEECS
T ss_pred             ccEEEEEcCCCc--EEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecccccee-EecCCCCCCEEEEEEc
Confidence            368999999996  6789999999999998888888 9999999999999999887776 8899999999999753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=96.94  E-value=0.00043  Score=49.07  Aligned_cols=48  Identities=17%  Similarity=0.356  Sum_probs=38.3

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG  235 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~  235 (371)
                      ...|||+...|......+.+.+|||+|...++.+.  ....||+|..++.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45799999998765555555569999999999987  3578999988763

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=96.89  E-value=0.00042  Score=57.33  Aligned_cols=52  Identities=21%  Similarity=0.409  Sum_probs=41.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~  241 (371)
                      ...+.|||+...|..-   |. -+|||+|+..++.+.-   ...||+|..++...++++
T Consensus        16 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   70 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP   70 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             CCCCCCCcCChhhcCe---EE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence            4568999999988753   33 4899999999999873   248999999999877653

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.86  E-value=0.00024  Score=58.68  Aligned_cols=49  Identities=16%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCce
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK  239 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~Di  239 (371)
                      .+.|||+...|..-   |.+.+|||+|+..++...-...||+|..++...|+
T Consensus        22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~   70 (117)
T 1jm7_B           22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDL   70 (117)
T ss_dssp             TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSC
T ss_pred             CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccc
Confidence            57899999888653   44459999999999998877889999999976554

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.84  E-value=0.00083  Score=57.08  Aligned_cols=46  Identities=22%  Similarity=0.461  Sum_probs=37.2

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM  237 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~  237 (371)
                      .+.|||+...|..   .|. -+|||+|+..|+.+.-  ...||+|..++...
T Consensus        53 ~~~C~iC~~~~~~---~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVT-LNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSS---EEE-ETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCC---ceE-CCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            4679999998865   233 4899999999999873  56899999998654

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=96.74  E-value=0.0015  Score=51.72  Aligned_cols=50  Identities=26%  Similarity=0.422  Sum_probs=39.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE  236 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~  236 (371)
                      .....|||+..+|......+. .+|||+|...++..+  ....||+|..+|..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            345789999999876554444 469999999999997  35689999988753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=96.73  E-value=0.00073  Score=67.68  Aligned_cols=53  Identities=23%  Similarity=0.479  Sum_probs=44.8

Q ss_pred             eEcCCcccccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceEEecCC
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      ..||||...+..    .++-||||+|+..|+...   ....||+|..++...++|.++|-
T Consensus       333 ~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~pf  388 (389)
T 2y1n_A          333 QLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF  388 (389)
T ss_dssp             SBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCCTT
T ss_pred             CCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEecCCC
Confidence            689999887754    456799999999999987   35799999999999988888773

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.72  E-value=0.0013  Score=48.62  Aligned_cols=46  Identities=15%  Similarity=0.316  Sum_probs=37.6

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE  236 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~  236 (371)
                      ...|||+...+...   +++.+|||+|...++...  ....||+|..++..
T Consensus         5 ~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            5 AERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            45799999988653   356799999999999986  35789999999863

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=96.71  E-value=0.0012  Score=53.68  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=39.3

Q ss_pred             eEcCCcccccCCc--------------eeEEEEeccCccccHHHHHHhh-------cCCCCCCCCCcCCC
Q 017480          189 FQCPITGLEFNGK--------------YRFVAMRTCGHVLSTKALKEVK-------SSSCLVCHEEFGEM  237 (371)
Q Consensus       189 ~~CPVT~~e~ng~--------------~rfV~L~~CG~V~Se~alkevk-------~~~CpvCg~~f~~~  237 (371)
                      ..|||+...|...              ..++.+-+|||+|...||.++-       ...||+|...|...
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            4799999988432              2466688999999999999874       45899999999753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=96.71  E-value=0.0021  Score=52.17  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=42.2

Q ss_pred             ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceee
Q 017480          116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINV  172 (371)
Q Consensus       116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~L  172 (371)
                      .-....|+||++++.+||+. .-|+.|++.+|.+||.....-|..+......||++.
T Consensus        26 ~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             CSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred             CcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence            34578999999999999776 489999999999998754334555555555555543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=96.70  E-value=0.0011  Score=57.56  Aligned_cols=52  Identities=21%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEec
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      .+.|||+...|..-   |. -+|||+|+..|+.+.-   ...||+|..++...+.+..|
T Consensus        78 ~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n  132 (150)
T 1z6u_A           78 SFMCVCCQELVYQP---VT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN  132 (150)
T ss_dssp             HTBCTTTSSBCSSE---EE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBC
T ss_pred             CCEeecCChhhcCC---EE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCC
Confidence            47899999988752   22 4999999999999874   24799999999887543333

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=96.61  E-value=0.00071  Score=55.51  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=42.0

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEe
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~L  242 (371)
                      ..+.|||+...|..-   |. -+|||+|+..++.+.-   ...||+|..++...|++..
T Consensus        22 ~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   76 (116)
T 1rmd_A           22 KSISCQICEHILADP---VE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP   76 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred             CCCCCCCCCcHhcCc---EE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence            357899999988753   22 4999999999999873   4689999999998887643

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=96.61  E-value=0.0028  Score=51.32  Aligned_cols=55  Identities=9%  Similarity=0.067  Sum_probs=41.3

Q ss_pred             cCCccccCCCCCCCCCeeeCCCC-ceecHHHHHHHHHcCCCCCccCccCCCCCceee
Q 017480          117 SKWCNCALSNEPLREPCVIDKLG-TIFNKEALVHALLSKNLPKQYSYIKGLKDLINV  172 (371)
Q Consensus       117 ~~w~~CaLS~~PL~~PIV~~~lG-~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~L  172 (371)
                      -....|.|+++++.+||+. ..| +.|.+.+|.+||.....-|..+......||++.
T Consensus        20 p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn   75 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred             cHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence            3467899999999999665 677 999999999998764444555555555565553

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=96.59  E-value=0.014  Score=44.14  Aligned_cols=70  Identities=11%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      |...|+|.|-+..+.   ..+++.+..||.+|..++   ++++....+..||..+..+..      |.+++.|.+.-.+-
T Consensus         1 ~~~~m~i~vNg~~~~---~~~~~~~~~tv~~Ll~~l---~~~~~~v~vavN~~~v~~~~~------L~~gD~V~ii~~V~   68 (70)
T 1ryj_A            1 MVIGMKFTVITDDGK---KILESGAPRRIKDVLGEL---EIPIETVVVKKNGQIVIDEEE------IFDGDIIEVIRVIY   68 (70)
T ss_dssp             CCCCEEEEEEETTEE---EEEEESSCCBHHHHHHHT---TCCTTTEEEEETTEECCTTSB------CCTTCEEEEEECTT
T ss_pred             CceeEEEEEeCccCc---eeEECCCCCcHHHHHHHh---CCCCCCEEEEECCEECCCccc------CCCCCEEEEEeccc
Confidence            778899999988763   466777778999997655   566777788999999887654      57889898765544


Q ss_pred             CC
Q 017480           81 GG   82 (371)
Q Consensus        81 G~   82 (371)
                      ||
T Consensus        69 GG   70 (70)
T 1ryj_A           69 GG   70 (70)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.52  E-value=0.0014  Score=46.69  Aligned_cols=41  Identities=17%  Similarity=0.459  Sum_probs=33.0

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh-----hcCCCCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV-----KSSSCLVC  230 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev-----k~~~CpvC  230 (371)
                      ...+.|||+...+...    ++-+|||+|...++.+.     ....||+|
T Consensus        13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3467899999998764    22489999999999998     34689988

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.46  E-value=0.0021  Score=55.05  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEEe---------------------------------
Q 017480            6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFTL---------------------------------   50 (371)
Q Consensus         6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li~---------------------------------   50 (371)
                      -|-||.++|.  ..++.|+.+.||.+++..|+.. ||+.. +..|+.                                 
T Consensus        13 ~LkV~llDg~--~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k   90 (128)
T 2kc2_A           13 PLKIRMLDGT--VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK   90 (128)
T ss_dssp             EEEEECTTSC--EEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred             cEEEEcCCCC--EEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence            3889999997  4556666677999999999999 98643 222221                                 


Q ss_pred             -----CCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480           51 -----NGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus        51 -----~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                           ++.+|+++.+| .++||.+++||-|.-
T Consensus        91 L~~dd~~~WLD~srtL-~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           91 LHTDDELNWLDHGRTL-REQGVEEHETLLLRR  121 (128)
T ss_dssp             CCCSSSEEEECSSSCH-HHHTCCTTSEEEEEE
T ss_pred             hcccCCCCcccCCCcH-HHcCCCCCCEEEEEE
Confidence                 24789999999 999999999976654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.38  E-value=0.0017  Score=47.29  Aligned_cols=41  Identities=24%  Similarity=0.520  Sum_probs=32.5

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVC  230 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvC  230 (371)
                      ...+.|||+...|..-   +.+ +|||+|+..++.++-     ...||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4467899999988752   333 999999999999874     2479988

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.37  E-value=0.0015  Score=50.68  Aligned_cols=49  Identities=14%  Similarity=0.376  Sum_probs=36.6

Q ss_pred             EcCCcccccC-----------CceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCc
Q 017480          190 QCPITGLEFN-----------GKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMD  238 (371)
Q Consensus       190 ~CPVT~~e~n-----------g~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~D  238 (371)
                      .|+|+..+|.           +....+.+-+|||+|-..+|.+.  ....||+|..+|...+
T Consensus        17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~   78 (81)
T 2ecl_A           17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR   78 (81)
T ss_dssp             CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred             CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence            3777776664           33445566679999999999997  3578999999987543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.33  E-value=0.0017  Score=51.52  Aligned_cols=53  Identities=19%  Similarity=0.335  Sum_probs=39.6

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----------cCCCCC--CCCC--cCCCce
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----------SSSCLV--CHEE--FGEMDK  239 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----------~~~Cpv--Cg~~--f~~~Di  239 (371)
                      ...+.|||+..++.+. .++.+.+|||+|+..++++.-          ...||.  |...  +..+++
T Consensus         3 ~~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i   69 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI   69 (94)
T ss_dssp             CSBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred             CCCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence            3568899999888643 355567899999999998752          247999  9998  554443

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=96.30  E-value=0.0033  Score=46.58  Aligned_cols=53  Identities=17%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVK--SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk--~~~CpvCg~~f~~~DiI~L  242 (371)
                      .....|+|+...+.+.  .+++.||||+ ++..++..+.  ...||+|..++.  ++|.+
T Consensus         5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i   60 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKV   60 (63)
T ss_dssp             GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEE
T ss_pred             CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEE
Confidence            3456799998766432  3445699998 8999999886  458999999985  45554

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.25  E-value=0.0099  Score=49.68  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe----CCeeCCCC------------
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL----NGKILDES------------   58 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~----~Gk~L~D~------------   58 (371)
                      +|-|+|=.+.+....+.+.|-..|||.|+|++|.+.   |+|.+      ++.|-+    .|+.|.|.            
T Consensus        11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr   90 (111)
T 4e71_A           11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR   90 (111)
T ss_dssp             EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred             EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence            455666544333346788888899999999999876   66654      455654    35667552            


Q ss_pred             -CCcccCCCCCCCCeEEEEee
Q 017480           59 -TPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus        59 -~tL~~~~~I~~~sTL~L~lr   78 (371)
                       -|| +.|+|++|+||.|..|
T Consensus        91 LNTL-~HY~V~dgatl~l~~~  110 (111)
T 4e71_A           91 VNTL-MHYNVRDGATLILSKV  110 (111)
T ss_dssp             CCBH-HHHTCCTTCEEEEEEC
T ss_pred             ecch-hhcCCCCCCEEEEEeC
Confidence             378 8999999999988765

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=96.22  E-value=0.0014  Score=53.64  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGE  236 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~  236 (371)
                      ...+.|||+...|..-   |.+ +|||+|+..|+..+-   ...||+|..++..
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3468999999888752   333 999999999999874   4589999999864

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.17  E-value=0.019  Score=44.34  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=51.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGG   84 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~~   84 (371)
                      |||.||-. |. ....+++.+..||++|   |...|+|+....+..||+++..+..+       ++.+|. .++..|||-
T Consensus         1 M~v~Vkl~-g~-~~~~~ev~~g~Tv~dL---L~~Lgl~~~~VvV~vNG~~v~~d~~l-------~GD~Ve-Iv~~V~G~~   67 (74)
T 2l32_A            1 MNVTVEVV-GE-ETSEVAVDDDGTYADL---VRAVDLSPHEVTVLVDGRPVPEDQSV-------EVDRVK-VLRLIKGGL   67 (74)
T ss_dssp             CEEEEECS-SS-SEEEEECSTTCSHHHH---HHTTCCCSSCCCEECCCCCCCTTSSS-------CCCCEE-ECSSCSCC-
T ss_pred             CEEEEEEe-Cc-cceeEEcCCCCcHHHH---HHHcCCCcceEEEEECCEECCHHHCC-------CCCEEE-EEEeecccc
Confidence            77888876 43 3556899999999998   66779999999899999999877533       368886 567777763

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.04  E-value=0.002  Score=49.09  Aligned_cols=44  Identities=18%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             eeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGEM  237 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~~  237 (371)
                      .+.|||+...+..    .++.||||+ |+..++..+  ..||+|..++...
T Consensus        25 ~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC--SBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC--CCCccCCceecCc
Confidence            4689999887654    345699999 999999865  6899999999764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.04  E-value=0.0028  Score=55.36  Aligned_cols=52  Identities=21%  Similarity=0.409  Sum_probs=42.5

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~  241 (371)
                      ...|.|||+...|..-   |. -+|||+|+..++.++-   ...||+|..++...++++
T Consensus        16 ~~~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   70 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP   70 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             CCCCCCCCCChhhcCc---EE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence            4568999999998763   22 4899999999999873   348999999999887664

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=96.01  E-value=0.008  Score=44.60  Aligned_cols=50  Identities=20%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             eeEcCCcccccCCceeEEE-EeccCcc-ccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480          188 RFQCPITGLEFNGKYRFVA-MRTCGHV-LSTKALKEVK--SSSCLVCHEEFGEMDKILI  242 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~-L~~CG~V-~Se~alkevk--~~~CpvCg~~f~~~DiI~L  242 (371)
                      ...|+|+...+.+.   ++ ..||||+ ++..++..+.  ...||+|..++.  ++|.+
T Consensus         8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i   61 (64)
T 2vje_A            8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLT   61 (64)
T ss_dssp             GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEE
T ss_pred             cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEee
Confidence            34699998876542   32 2399999 7999999885  467999999985  45655

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=95.90  E-value=0.003  Score=48.06  Aligned_cols=43  Identities=19%  Similarity=0.352  Sum_probs=35.6

Q ss_pred             eeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGE  236 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~  236 (371)
                      .+.|||+...+..    .++.||||+ |+..++..+  ..||+|..++..
T Consensus        24 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence            4689999887654    334599999 999999988  789999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.81  E-value=0.0061  Score=48.56  Aligned_cols=36  Identities=19%  Similarity=0.480  Sum_probs=31.4

Q ss_pred             CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480          119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK  154 (371)
Q Consensus       119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k  154 (371)
                      -..|.|+++++.+||+.-.-|+.|.+++|.+||...
T Consensus         7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~   42 (94)
T 2yu4_A            7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR   42 (94)
T ss_dssp             CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH
T ss_pred             EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc
Confidence            357999999999997764589999999999999863

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=95.75  E-value=0.058  Score=41.97  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC---CCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL---DESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L---~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      ..|-||..+|......+..  ++||.+|.+.|...+.+...+.|+  |-.+.|   +.+.|| .+.||.+.++|.|.
T Consensus         8 ~~i~iRlpdG~r~~~~F~~--~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL-~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLA--SNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSL-LEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEEECTTSCEEEEEEET--TSBHHHHHHHHHHTTCCTTTEEEECSSSCCBGGGSCTTSBT-TTTTCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCC--CCCHHHHHHHHHHcCCCCCCeEEEeCCCCCCCcCCCCCCCH-HHCCCCCCCEEEEE
Confidence            5788999999743444555  679999999999887778889997  446878   456899 99999999998775

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=95.64  E-value=0.01  Score=53.45  Aligned_cols=54  Identities=19%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             cCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCC-CCCccCccCCCCCcee
Q 017480          117 SKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLIN  171 (371)
Q Consensus       117 ~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~-~~~~~~HIksLKDlv~  171 (371)
                      -....|+||++++.+||+. ..|+.|++.+|..||.... .-|.++...+..||++
T Consensus       104 p~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p  158 (179)
T 2f42_A          104 PDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP  158 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred             cHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence            4568899999999999766 7999999999999998632 2344444444455544

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=95.64  E-value=0.038  Score=44.93  Aligned_cols=69  Identities=9%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      +.|-|+. .|.  .+.+.+-.++.+.-|....+.+ |+++++.||.|.|..+.++.|- .+.++..+.+|++.+
T Consensus        22 IniKV~~-~g~--ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP-~~L~meD~DiID~~~   91 (95)
T 2l76_A           22 FPLKIRC-RAD--LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATP-RTLKLGVADIIDCVV   91 (95)
T ss_dssp             EEEEEEC-SSS--EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCH-HHHTCCSSCEEEEEE
T ss_pred             EEEEEEc-CCc--EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCH-hHcCCCCCCEEEEEE
Confidence            7889995 565  4556666688999999999999 9999999999999999998888 899999999998754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.49  E-value=0.0079  Score=45.33  Aligned_cols=50  Identities=16%  Similarity=0.280  Sum_probs=39.3

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCCCceEEec
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      .....|+|+...+.    -+++.||||+ |+..++..+  ..||+|..++..  +|.|.
T Consensus        13 ~~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~--~~~i~   63 (68)
T 2ea5_A           13 ENSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVKYF--QQCPMCRQFVQE--SFALS   63 (68)
T ss_dssp             CCSSCCSSSSSSCC----CCEETTTTBCCSCTTHHHHC--SSCTTTCCCCCC--EECCC
T ss_pred             CCCCCCCCcCcCCC----CEEEECCCChhhhHHHHhcC--CCCCCCCcchhc--eEEee
Confidence            34568999987654    4788999999 999999964  689999999865  45554

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=95.47  E-value=0.007  Score=46.88  Aligned_cols=47  Identities=19%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             eEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCCCceEEec
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGEMDKILIN  243 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~~DiI~Ln  243 (371)
                      ..|+|+...+..    +++.||||+ |+..++..+.  .||+|..++...  |.+.
T Consensus        19 ~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i~~~--~~i~   66 (79)
T 2yho_A           19 MLCMVCCEEEIN----STFCPCGHTVCCESCAAQLQ--SCPVCRSRVEHV--QHVY   66 (79)
T ss_dssp             TBCTTTSSSBCC----EEEETTCBCCBCHHHHTTCS--BCTTTCCBCCEE--EECB
T ss_pred             CEeEEeCcccCc----EEEECCCCHHHHHHHHHhcC--cCCCCCchhhCe--EEEE
Confidence            479999776543    566799999 9999999774  899999999763  4444

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.42  E-value=0.0029  Score=45.57  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE  236 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~  236 (371)
                      ...+.|||+...|..-    .+-+|||+|+..++.. ....||+|..++..
T Consensus         4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-SGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-CCCCCCcCCcEeec
Confidence            3457899999888752    3358999999999987 45689999998864

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=94.91  E-value=0.12  Score=44.04  Aligned_cols=61  Identities=20%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcc---CCCC------CceEEEe----CCe-eCCCC-------------CCcccCCCCCCC
Q 017480           18 TLTVGANQFETLNHLKRSLLSL---DQSL------SSLYFTL----NGK-ILDES-------------TPLFKNPQIAPL   70 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~---gi~~------~~q~Li~----~Gk-~L~D~-------------~tL~~~~~I~~~   70 (371)
                      .+.+.|-..|||.|+|++|.+.   ++|.      +++.|-+    .|+ .|.|.             -|| +.|+|+++
T Consensus        18 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL-~HY~V~dg   96 (127)
T 3h6n_A           18 SLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTL-AHYKIPEG   96 (127)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBT-TTTTCCTT
T ss_pred             ceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccc-cccCCCCC
Confidence            5778888889999999999876   6665      5667765    333 36542             388 99999999


Q ss_pred             CeEEEEeee
Q 017480           71 STLYLRQRV   79 (371)
Q Consensus        71 sTL~L~lrL   79 (371)
                      +||.|..++
T Consensus        97 atv~l~~~~  105 (127)
T 3h6n_A           97 ASLAMSLID  105 (127)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEcc
Confidence            999998763

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=94.81  E-value=0.026  Score=43.93  Aligned_cols=68  Identities=13%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             eEEEEEcCCCCeeeEEEEcC--CCCCHHHHHHHHhccCCC-CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            5 TQIFIKSPSNSLTTLTVGAN--QFETLNHLKRSLLSLDQS-LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~--~~~TV~~lK~~i~~~gi~-~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      |+|.|   +|.    .+++.  +..||.+|-+   +++++ +....+..||..+.-+. . .++-|++++.|++ ++..|
T Consensus         1 M~I~v---NGe----~~e~~~~~~~Tl~~LL~---~l~~~~~~~vAVavNg~iVpr~~-~-~~~~L~dGD~IEI-v~~Vg   67 (78)
T 2k5p_A            1 MNLTV---NGK----PSTVDGAESLNVTELLS---ALKVAQAEYVTVELNGEVLEREA-F-DATTVKDGDAVEF-LYFMG   67 (78)
T ss_dssp             CEEEE---TTE----EEECSSCSCEEHHHHHH---HHTCSCTTTCCEEETTEECCTTH-H-HHCEECSSBCEEE-CCCCC
T ss_pred             CEEEE---CCE----EEEcCCCCCCcHHHHHH---HcCCCCCCcEEEEECCEECChHH-c-CcccCCCCCEEEE-Eeeec
Confidence            67777   454    45666  5679999944   44677 77778899999987652 2 5567899999975 66667


Q ss_pred             CCCC
Q 017480           82 GGGD   85 (371)
Q Consensus        82 ~~~~   85 (371)
                      ||.|
T Consensus        68 GG~~   71 (78)
T 2k5p_A           68 GGKL   71 (78)
T ss_dssp             CSCC
T ss_pred             CCCc
Confidence            7665

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=94.33  E-value=0.0057  Score=52.53  Aligned_cols=46  Identities=20%  Similarity=0.382  Sum_probs=36.9

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc---CCCCCCCCCcC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS---SSCLVCHEEFG  235 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~---~~CpvCg~~f~  235 (371)
                      ...|.|||+...|..-   |. -+|||+|+..+|.++-.   ..||+|..+..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CcCcCCCCCChhhcCc---EE-CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            4578999999998754   22 49999999999999742   48999998653

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=94.13  E-value=0.037  Score=45.42  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=38.4

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~  241 (371)
                      .||.++..+.-..|   +-||+|||+..+..+..   ...||.|..++..-+.+.
T Consensus         3 fC~~C~~Pi~iygR---mIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A            3 FCDKCGLPIKVYGR---MIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             BCTTTCSBCSEEEE---EETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred             ecCccCCCeEEEee---eccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence            59999998874433   34999999999999863   578999999998655443

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.79  E-value=0.1  Score=43.88  Aligned_cols=74  Identities=20%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             ceEEEEEcCCCC-eeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe-CC---e-eCCC--C--------
Q 017480            4 KTQIFIKSPSNS-LTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL-NG---K-ILDE--S--------   58 (371)
Q Consensus         4 ~MQIFVk~~~g~-~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~-~G---k-~L~D--~--------   58 (371)
                      .|-|+|-.+.+. ...+.+.|-..|||.|+|++|.+.   ++|.+      ++.|-+ .|   + .|.|  .        
T Consensus        13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w   92 (117)
T 4e74_A           13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW   92 (117)
T ss_dssp             EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred             EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence            456666544321 235778888889999999999876   67654      556654 33   3 2544  1        


Q ss_pred             ---CCcccCCCCCCCCeEEEEee
Q 017480           59 ---TPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus        59 ---~tL~~~~~I~~~sTL~L~lr   78 (371)
                         -|| +.|+|++++||.|..|
T Consensus        93 krLNTL-~HY~V~dgatl~l~~~  114 (117)
T 4e74_A           93 KRLNTL-AHYQVPDGSVVALVSK  114 (117)
T ss_dssp             CCCCBH-HHHTCCTTCEEEEEEC
T ss_pred             eEeccc-cccCCCCCCEEEEEeC
Confidence               378 8999999999998765

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=93.75  E-value=0.06  Score=44.15  Aligned_cols=46  Identities=17%  Similarity=0.293  Sum_probs=35.5

Q ss_pred             EcCCcccccCCc--------------eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480          190 QCPITGLEFNGK--------------YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG  235 (371)
Q Consensus       190 ~CPVT~~e~ng~--------------~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~  235 (371)
                      .|+|+...|...              --.+++-+|||+|-..+|...  ....||+|..+|.
T Consensus        39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            488888777643              113556699999999999997  3578999999875

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=93.74  E-value=0.17  Score=40.27  Aligned_cols=67  Identities=13%  Similarity=0.150  Sum_probs=46.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCC-CCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQF-ETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~-~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .|+|.|   +|.    .+++.+. .||.+|-+.+   ++++....+..||..+..+. . .+.-|.+++.|.+.-.+-||
T Consensus        20 ~M~I~v---NGe----~~el~~~~~Tv~dLL~~L---~~~~~~vaVavNg~iV~~~~-~-~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           20 RHMLQL---NGK----DVKWKKDTGTIQDLLASY---QLENKIVIVERNKEIIGKER-Y-HEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             --CEEE---TTE----EECCSSSCCBHHHHHHHT---TCTTSCCEEEETTEEECGGG-T-TTSBCCSSSEEEEEEECCC-
T ss_pred             ceEEEE---CCE----EEECCCCCCcHHHHHHHh---CCCCCCEEEEECCEECChhh-c-CCcCCCCCCEEEEEcccccC
Confidence            588888   553    5667666 8999996654   56677778899999887542 2 45678999999876655443

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=93.49  E-value=0.026  Score=55.48  Aligned_cols=43  Identities=16%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             eeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGE  236 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~  236 (371)
                      .+.|||+...+..   .| +-||||+ |+..|+..+  ..||+|..++..
T Consensus       295 ~~~C~IC~~~~~~---~v-~lpCgH~~fC~~C~~~~--~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDKEVS---VV-FIPCGHLVVCQECAPSL--RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSSBCC---EE-EETTCCEEECTTTGGGC--SBCTTTCCBCCE
T ss_pred             CCCCCccCCcCCc---eE-EcCCCChhHhHHHHhcC--CcCCCCCCCccC
Confidence            4689999987754   34 3499999 999999987  689999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.49  E-value=0.058  Score=49.58  Aligned_cols=37  Identities=22%  Similarity=0.490  Sum_probs=32.3

Q ss_pred             ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480          116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS  153 (371)
Q Consensus       116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~  153 (371)
                      ...+..|.|+++++.+||+. .-|+.|.+..|.+||-.
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~  241 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQR  241 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHH
T ss_pred             CCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHH
Confidence            35688999999999999665 58999999999999865

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=93.13  E-value=0.17  Score=43.72  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             ceEEEEEcCCC----CeeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe----CCe-eCCCC-------
Q 017480            4 KTQIFIKSPSN----SLTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL----NGK-ILDES-------   58 (371)
Q Consensus         4 ~MQIFVk~~~g----~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~----~Gk-~L~D~-------   58 (371)
                      .|-|+|=...+    ....+.+.|-..|||.|+|++|.+.   |+|.+      ++-|-+    +|+ .|.|.       
T Consensus        24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~  103 (138)
T 2r2o_A           24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ  103 (138)
T ss_dssp             EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred             EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccccc
Confidence            45555533322    1245778888889999999999977   67654      445544    243 36542       


Q ss_pred             ------CCcccCCCCCCCCeEEEEeee
Q 017480           59 ------TPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus        59 ------~tL~~~~~I~~~sTL~L~lrL   79 (371)
                            -|| +.|+|++++||.|+.|.
T Consensus       104 ~~wkrLNTL-~HY~V~Dga~l~l~~~~  129 (138)
T 2r2o_A          104 GLWRRLNTL-QHYKVPDGATVALVPCL  129 (138)
T ss_dssp             TTEEECCBH-HHHTCCTTCEEEEEEC-
T ss_pred             CCceeecch-hccCCCCCCEEEEEECC
Confidence                  288 99999999999987764

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=92.62  E-value=0.32  Score=40.89  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC--C-CCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL--D-ESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L--~-D~~tL~~~~~I~~~sTL~L~   76 (371)
                      ..|-||..+|......+..  ++||.+|...|...+.+...|.|+  |=.+.|  + .+.|| .+.||.+..+|.|.
T Consensus        44 t~IqIRlPdG~rl~~rF~~--~~tl~~V~~fV~~~~~~~~~F~L~t~fPrk~l~~~d~~~TL-~e~gL~psa~Liv~  117 (124)
T 1wj4_A           44 AQLMLRYPDGKREQITLPE--QAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITL-QEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCEEEEEEET--TSCHHHHHHHHHHHHCCTTTEEEECSSSCCEETSSCSSSCT-TTTTCCSSBCCEEE
T ss_pred             EEEEEECCCCCEEEEEeCC--CCCHHHHHHHHHhcCCCCCCeEEecCCCCcCCccCCCCCCH-HHCCCCCceEEEEE
Confidence            5789999999733444444  779999999998777777788886  458888  3 37899 99999998888765

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=91.84  E-value=0.62  Score=38.11  Aligned_cols=70  Identities=13%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEE--eCCeeCC---CCCCcccCCCCCCCCeEEEEe
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFT--LNGKILD---ESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li--~~Gk~L~---D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      -.|-||..+|.  .+.-.-..++||.+|.+.|... +.+...+.|+  |--+.|+   .+.|| .+.||.+.++|.+..
T Consensus        14 t~IqIRlpdG~--rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL-~elgL~psa~L~v~~   89 (109)
T 2dzk_A           14 ARIQFRLPDGS--SFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRL-LDLELAPSASVVLLP   89 (109)
T ss_dssp             EEEEEECSSSC--EEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBT-GGGTCSSEEEEEEEC
T ss_pred             EEEEEECCCCC--EEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCH-HHCCCCCceEEEEEE
Confidence            57889999997  3444555578999999999988 8877788886  4577775   36799 999999998887665

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=91.37  E-value=0.35  Score=35.70  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      |+|.|   +|+    .+++.+..||.+|.+.+   +++.....+..||..+..+. . .+.-|++++.|.+.-.+-||
T Consensus         1 m~i~v---Ng~----~~~~~~~~tv~~ll~~l---~~~~~~v~vavN~~~v~~~~-~-~~~~L~~gD~v~i~~~V~GG   66 (66)
T 1f0z_A            1 MQILF---NDQ----AMQCAAGQTVHELLEQL---DQRQAGAALAINQQIVPREQ-W-AQHIVQDGDQILLFQVIAGG   66 (66)
T ss_dssp             CCEEE---SSC----EECCCTTCCHHHHHHHH---TCCCSSEEEEETTEEECHHH-H-TTCCCCTTEEECEEESCCCC
T ss_pred             CEEEE---CCE----EEEcCCCCcHHHHHHHc---CCCCCCEEEEECCEECCchh-c-CCcCCCCCCEEEEEeecccC
Confidence            66766   554    45667778999997765   45667778889999887431 1 34557899999876655543

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=91.16  E-value=0.74  Score=34.63  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC--CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL--SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~--~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      |+|-||-...- +.-++++ +..||.+|.+.|... ++..  ....+..||+.+.+.     ++-|+++++|.+..++-|
T Consensus         1 M~v~V~~fa~l-~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----~~~l~~gDeV~i~PpvsG   73 (74)
T 3rpf_C            1 MMVEVRFFGPI-KEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----NTPLKDGDVISLLPPVCG   73 (74)
T ss_dssp             CEEEEEECTTC-CCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----TCCCCTTCEEEEECCBCC
T ss_pred             CEEEEEEEeec-ceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----CcCCCCCCEEEEECCCCC
Confidence            44555544331 2223555 557999999999876 4322  456777899885432     234789999998888777


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        74 G   74 (74)
T 3rpf_C           74 G   74 (74)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=90.44  E-value=0.05  Score=45.58  Aligned_cols=46  Identities=17%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             EcCCcccccCCc--------------eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480          190 QCPITGLEFNGK--------------YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG  235 (371)
Q Consensus       190 ~CPVT~~e~ng~--------------~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~  235 (371)
                      .|+|+..+|...              .-.+++-+|||+|...|+.+.  ....||+|..+|.
T Consensus        50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            588888777531              123344589999999999986  3568999999875

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=89.85  E-value=0.86  Score=37.19  Aligned_cols=71  Identities=10%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeCC--CCCCcccCCCCCCCCeEEEEe
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKILD--ESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L~--D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      ...|-||..+|......+..  ++||.+|.+.|...+..+..+.|+  |=.+.|.  .+.|| .+.||.+..+|.|..
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~--~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~d~~~TL-~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFK--SWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGSSL-EDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEES--SSBTHHHHHHHHHHTCCTTTEEEECSSSCCBCCCCSSCBH-HHHTCSSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCC--CCCHHHHHHHHHhcCCCCCCeEEEeCCCCcCCCCCCCCCH-HHcCCCCCeEEEEEe
Confidence            36789999999744445555  679999999999776666788886  4477786  46899 999999988886543

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=89.44  E-value=1.1  Score=35.69  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480           20 TVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus        20 ~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      .+++  .+++..||.-|+.+ |+..+.--+.+.+.+|+++.+| -+-+++-...+.+.+.+-
T Consensus         8 hmDI--~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~L-vdQcVqgeGlVQinvqik   66 (89)
T 2juo_A            8 AIDI--NEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSL-FDQGVKTDGTVQLSVQVI   66 (89)
T ss_dssp             EEES--SSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBT-TTSSCCCCSEEEEEEEEE
T ss_pred             hccc--cCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccH-HHhhcccccEEEEEEEEE
Confidence            4566  55999999999999 9998888888899999999999 888899889999999886

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=89.00  E-value=1.8  Score=39.73  Aligned_cols=63  Identities=8%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEEe-C----CeeCCC-CCCcccCCCCCCCCeEEEEeeec
Q 017480           17 TTLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFTL-N----GKILDE-STPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus        17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li~-~----Gk~L~D-~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ..+++..+..+||.+|+.++... +|+.+ +.||-. .    ...|+| +.+| .+++|..+..|-|.+|..
T Consensus       152 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl-~d~~L~~~Q~illE~r~~  222 (231)
T 3jyu_A          152 NVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTI-QDAGLYQGQVLVIEPQNE  222 (231)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBT-TTTTCCTTEEEEEEECCT
T ss_pred             ceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCH-HHhCCCCCCEEEEEEecC
Confidence            34567778899999999999999 99987 688854 3    345665 5899 999999999998888764

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=88.99  E-value=0.28  Score=48.75  Aligned_cols=157  Identities=13%  Similarity=0.139  Sum_probs=86.3

Q ss_pred             CCCCCCCCeEEEE-----eeecCCCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCC
Q 017480           64 NPQIAPLSTLYLR-----QRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKL  138 (371)
Q Consensus        64 ~~~I~~~sTL~L~-----lrL~G~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~l  138 (371)
                      +...+.-..|.++     ..++|-.++-|+.  .+.| +.. |.+ ...  ..|.. ..-|   +.+..   .=++++++
T Consensus       136 ~i~fP~~~eI~VNg~~vk~n~rGlKnk~Gt~--~PvD-IT~-~lr-~~~--~~N~I-~i~y---~~~~~---~Y~i~v~l  201 (371)
T 3i2d_A          136 PIQFPFPNELRCNNVQIKDNIRGFKSKPGTA--KPAD-LTP-HLK-PYT--QQNNV-ELIY---AFTTK---EYKLFGYI  201 (371)
T ss_dssp             CCCCCSSEEEEETTEECCSCCSSCTTSCGGG--SCEE-CGG-GCC-CSS--SCEEE-EEEE---EEESS---CEEEEEEE
T ss_pred             CeecCCceEEEECCEEeccccccCCCCCCCc--CCCC-chh-hhc-cCC--CCcEE-EEEE---ecccc---eEEEEEEE
Confidence            3455544445443     2478889999986  5666 333 221 111  11221 1223   22332   12445566


Q ss_pred             CceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCC--CCCCceeEcCCcccccCCceeEEEEeccCcc--c
Q 017480          139 GTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEE--NGDGIRFQCPITGLEFNGKYRFVAMRTCGHV--L  214 (371)
Q Consensus       139 G~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~--~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V--~  214 (371)
                      =+.+.-+.|++.|+.+...... +  . .+.|.-.+..+++.+-  ......+.||++...|.-=.|.   ..|-|+  |
T Consensus       202 Vk~~s~e~Ll~~I~~~~~i~~e-~--t-l~~Ik~~ls~d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg---~~C~HlQCF  274 (371)
T 3i2d_A          202 VEMITPEQLLEKVLQHPKIIKQ-A--T-LLYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKS---INCKHLQCF  274 (371)
T ss_dssp             EEECCHHHHHHHHHTSCCBCHH-H--H-HHHHHHHHHSCC------CEEEEESBCTTTSSBCSSEEEE---TTCCSSCCE
T ss_pred             EEecCHHHHHHHHHhcCCCCHH-H--H-HHHHHHHhccCCCCceeeeeeEEeecCCCccccccccCcC---CcCCCcceE
Confidence            6778899999999875322110 0  0 0111111221111100  0113457999999998754444   479998  7


Q ss_pred             cHHHHHHhh----cCCCCCCCCCcCCCceEE
Q 017480          215 STKALKEVK----SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       215 Se~alkevk----~~~CpvCg~~f~~~DiI~  241 (371)
                      ...++=++.    .+.||+|++.+..+|+++
T Consensus       275 Dl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I  305 (371)
T 3i2d_A          275 DALWFLHSQLQIPTWQCPVCQIDIALENLAI  305 (371)
T ss_dssp             EHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred             CHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence            777776663    689999999999888654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=88.94  E-value=0.33  Score=46.24  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             cccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480          115 RLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALL  152 (371)
Q Consensus       115 ~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL  152 (371)
                      .......|.||++++.+||++-.-|+.|.+++|.+|+-
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~  214 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ  214 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH
Confidence            34567789999999999977646799999999999953

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=88.67  E-value=0.62  Score=34.73  Aligned_cols=33  Identities=18%  Similarity=0.544  Sum_probs=29.6

Q ss_pred             CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480          119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL  152 (371)
Q Consensus       119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL  152 (371)
                      -..|+|+++++.+|++. .-|+.|.++.|.+||.
T Consensus         8 ~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~   40 (78)
T 1t1h_A            8 YFRCPISLELMKDPVIV-STGQTYERSSIQKWLD   40 (78)
T ss_dssp             SSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHT
T ss_pred             cCCCCCccccccCCEEc-CCCCeecHHHHHHHHH
Confidence            46799999999999665 7999999999999985

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=88.51  E-value=1  Score=41.03  Aligned_cols=64  Identities=9%  Similarity=0.148  Sum_probs=51.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEE--e-C--CeeCCC-CCCcccCCCCCCCCeEEEEeeecCC
Q 017480           18 TLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFT--L-N--GKILDE-STPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li--~-~--Gk~L~D-~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .+++.++-.+||.+|+.++... +|+.+ +.||-  + .  ...|+| +.|| .+++|..+..|-|.+|...|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl-~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI-QDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBH-HHHTCCTTCEEEEEECCCC-
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCH-HHhCCCCCCEEEEEEecCCC
Confidence            4677888899999999999999 99987 68884  3 2  345665 5799 99999999999888886543

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=86.77  E-value=2  Score=45.25  Aligned_cols=75  Identities=15%  Similarity=0.219  Sum_probs=51.8

Q ss_pred             ceEEEEEcCCC-CeeeEEEEcCCCCCHHHHHHHHhcc---CCCC------CceEEEe-C---Ce-eCCCC----------
Q 017480            4 KTQIFIKSPSN-SLTTLTVGANQFETLNHLKRSLLSL---DQSL------SSLYFTL-N---GK-ILDES----------   58 (371)
Q Consensus         4 ~MQIFVk~~~g-~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~------~~q~Li~-~---Gk-~L~D~----------   58 (371)
                      .|.|+|=.+++ ....+.+.|-..|||.|+|++|.+.   |+|.      +++-|-+ .   |+ .|.|.          
T Consensus       233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w  312 (627)
T 3ig3_A          233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDW  312 (627)
T ss_dssp             EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred             eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCce
Confidence            45666655442 2246778888899999999999876   5654      4556644 2   33 35441          


Q ss_pred             ---CCcccCCCCCCCCeEEEEeee
Q 017480           59 ---TPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus        59 ---~tL~~~~~I~~~sTL~L~lrL   79 (371)
                         -|| ++|+|++++||.|+.|.
T Consensus       313 krLNTL-~HY~V~Dga~v~L~p~~  335 (627)
T 3ig3_A          313 KRVNSL-AHYQVTDGSLVALVPKQ  335 (627)
T ss_dssp             EECCBT-TTTTCCTTCEEEEEEC-
T ss_pred             eEecch-hhcCCCCCceEEEEecc
Confidence               378 99999999999998875

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=86.67  E-value=0.48  Score=46.91  Aligned_cols=101  Identities=21%  Similarity=0.320  Sum_probs=60.3

Q ss_pred             eeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCC--CCCCceeEcCCcccccCCceeEEEEeccC
Q 017480          134 VIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEE--NGDGIRFQCPITGLEFNGKYRFVAMRTCG  211 (371)
Q Consensus       134 V~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~--~~~~~~~~CPVT~~e~ng~~rfV~L~~CG  211 (371)
                      +++++=+-+.-+.||+.|+.+...+. .|.   +++|.-+|+.+++.+-  ......+.||++...|.-=.|.   ..|-
T Consensus       163 l~V~lV~~~s~~~Llq~l~~k~~~~~-e~t---~~~Ik~~l~~d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg---~~C~  235 (360)
T 4fo9_A          163 MSVYLVRQLTSAMLLQRLKMKGIRNP-DHS---RALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRA---VTCT  235 (360)
T ss_dssp             EEEEEEEECCHHHHHHHHHTC-CBCH-HHH---HHHHHHHHC---------CCEEEESBCTTTCSBCSSEEEE---TTCC
T ss_pred             EEEEEEEeCCHHHHHHHHHhcCCCCH-HHH---HHHHHHHhccCCccceeeeeeEEeeeCCCccceeccCCcC---CCCC
Confidence            44455566789999999987643221 110   1122222322221110  0113457899999998754444   4799


Q ss_pred             cc--ccHHHHHHhh----cCCCCCCCCCcCCCceEE
Q 017480          212 HV--LSTKALKEVK----SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       212 ~V--~Se~alkevk----~~~CpvCg~~f~~~DiI~  241 (371)
                      |+  |...++=++.    .+.||+|++.+.-+|+++
T Consensus       236 HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I  271 (360)
T 4fo9_A          236 HLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL  271 (360)
T ss_dssp             CCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred             CCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence            98  7777777664    589999999999888653

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=86.27  E-value=2.5  Score=41.01  Aligned_cols=75  Identities=16%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C----CCCCceEEEe------CCeeCCCCCCcccCCCCCCCCeE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D----QSLSSLYFTL------NGKILDESTPLFKNPQIAPLSTL   73 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g----i~~~~q~Li~------~Gk~L~D~~tL~~~~~I~~~sTL   73 (371)
                      +-|-|.-. +  .+-++..+++.||.++-.+|.++ .    .++++.-|..      .|.+|+++.+| ..|+++++..|
T Consensus         4 ~~~~~~~~-~--~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l-~~y~~~~~~~l   79 (371)
T 3ivf_A            4 LSLKISIG-N--VVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKAL-DYYMLRNGDTM   79 (371)
T ss_dssp             EEEEEEET-T--EEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBG-GGGTCCTTCEE
T ss_pred             EEEEEEec-c--eeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCH-HHhCCCCCcee
Confidence            44555555 4  35678888899999999998777 2    2677877776      57899999999 99999999887


Q ss_pred             EEE-------eeecCCC
Q 017480           74 YLR-------QRVFGGG   83 (371)
Q Consensus        74 ~L~-------lrL~G~~   83 (371)
                      +..       +.|.+|.
T Consensus        80 ~~~~~~~~~~V~l~dg~   96 (371)
T 3ivf_A           80 EYRKKQRPLKIRMLDGT   96 (371)
T ss_dssp             EEEECEEEEEEECTTSC
T ss_pred             eccCceeEEEEECcCCC
Confidence            765       6777664

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=86.18  E-value=1.9  Score=45.44  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             ceEEEEEcCCC----CeeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe----CCe-eCCCC-------
Q 017480            4 KTQIFIKSPSN----SLTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL----NGK-ILDES-------   58 (371)
Q Consensus         4 ~MQIFVk~~~g----~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~----~Gk-~L~D~-------   58 (371)
                      .|.|.|=...|    ....+.+.|-..|||.|+|++|.+.   |+|.+      ++.|-+    .|+ .|.|.       
T Consensus       257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~  336 (644)
T 3hm6_X          257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ  336 (644)
T ss_dssp             EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred             eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceec
Confidence            35566544332    1245778888899999999999965   66654      445544    233 35442       


Q ss_pred             ------CCcccCCCCCCCCeEEEEeeec
Q 017480           59 ------TPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus        59 ------~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                            -|| ++|+|++++||.|+.+.-
T Consensus       337 ~~wkrLNTL-~HY~V~dga~v~L~p~~~  363 (644)
T 3hm6_X          337 GLWRRLNTL-QHYKVPDGATVALVPCLT  363 (644)
T ss_dssp             TTEEECCBT-TTTTCCTTCEEEEEEC--
T ss_pred             Ccceeecch-hhcCCCCCcEEEEEeccc
Confidence                  389 999999999999877653

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.86  E-value=0.58  Score=36.23  Aligned_cols=48  Identities=21%  Similarity=0.373  Sum_probs=37.4

Q ss_pred             eeEcCCcccccCCceeEEEEeccC-----ccccHHHHHHhh----cCCCCCCCCCcCCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCG-----HVLSTKALKEVK----SSSCLVCHEEFGEM  237 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG-----~V~Se~alkevk----~~~CpvCg~~f~~~  237 (371)
                      .-.|+|+..++.....+  +.||+     |.|-..+|.+.-    ...||+|..+|.-.
T Consensus        15 ~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           15 QDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             SCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            45799999888644444  47996     999999999973    25899999999754

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=85.80  E-value=0.6  Score=51.58  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=40.0

Q ss_pred             ccCCccccCCCCCCCCCeeeCCCC-ceecHHHHHHHHHcCCCCCccCccCCCCCcee
Q 017480          116 LSKWCNCALSNEPLREPCVIDKLG-TIFNKEALVHALLSKNLPKQYSYIKGLKDLIN  171 (371)
Q Consensus       116 ~~~w~~CaLS~~PL~~PIV~~~lG-~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~  171 (371)
                      .-.+..|.||++..++||+. ..| .-|++++|.+||+.....|.++.+.+..||++
T Consensus       888 iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP  943 (968)
T 3m62_A          888 VPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP  943 (968)
T ss_dssp             SCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred             CcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence            34578999999999999665 676 68999999999986444444444444444443

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=85.61  E-value=1.5  Score=36.76  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CCCCCceEEE--eCCeeCCC-CCCcccCCCCCCCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQSLSSLYFT--LNGKILDE-STPLFKNPQIAPLS   71 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~~~q~Li--~~Gk~L~D-~~tL~~~~~I~~~s   71 (371)
                      ..|-||..+|.  .+.-....++||.+|.+.|...  +.....|.|+  |-.+.|+| +.|| .+.||.+..
T Consensus        53 t~IqIRlpdG~--rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL-~eagL~psa  121 (127)
T 1s3s_G           53 TNIQIRLADGG--RLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTL-KEANLLNAV  121 (127)
T ss_dssp             CCEEEEETTTT--EEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBH-HHHTCSSCE
T ss_pred             EEEEEECCCCC--EEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcH-HHCCCcCce
Confidence            56889999997  4555666788999999999885  4566778886  45788865 6899 999999854

>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C

Probab=84.30  E-value=6  Score=31.19  Aligned_cols=61  Identities=10%  Similarity=0.099  Sum_probs=50.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcc--C--C---CCCceEEEeCC--eeCCCCCCcccCCCCCCCCeEEEEe
Q 017480           16 LTTLTVGANQFETLNHLKRSLLSL--D--Q---SLSSLYFTLNG--KILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus        16 ~~t~~l~v~~~~TV~~lK~~i~~~--g--i---~~~~q~Li~~G--k~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      ...+-|-|+..+|+.++-++++.-  |  +   |-.-.++.++|  .+|..+.|+ ++.||.+...|++..
T Consensus        12 FV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tv-ae~gl~P~e~vev~~   81 (83)
T 2inc_C           12 FVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIV-SDAGLRPTETLDIIF   81 (83)
T ss_dssp             SBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBG-GGSCCCTTCEEEEEE
T ss_pred             cEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEe-eccCCCCceEEEEEE
Confidence            345667888899999999998876  5  3   22246788999  999999999 999999999988764

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=84.19  E-value=2.1  Score=36.33  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcc-----CCCC----CceEEEe-C---CeeCCC--C------------CCcccCCCCCC
Q 017480           17 TTLTVGANQFETLNHLKRSLLSL-----DQSL----SSLYFTL-N---GKILDE--S------------TPLFKNPQIAP   69 (371)
Q Consensus        17 ~t~~l~v~~~~TV~~lK~~i~~~-----gi~~----~~q~Li~-~---Gk~L~D--~------------~tL~~~~~I~~   69 (371)
                      ..+.+.|-..|||.|+|++|...     |.|.    +++.|-+ .   |.+|.|  .            -|| +.|+|++
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL-~HY~V~D  117 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTI-GHYEISN  117 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBT-GGGTCCT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccc-cccCCCC
Confidence            45778888889999999998754     4443    4555543 1   233432  1            267 7899999


Q ss_pred             CCeEEEE
Q 017480           70 LSTLYLR   76 (371)
Q Consensus        70 ~sTL~L~   76 (371)
                      ++||.|.
T Consensus       118 gatlal~  124 (126)
T 3kuz_A          118 GSTIKVF  124 (126)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEe
Confidence            9998774

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=84.07  E-value=4.5  Score=31.90  Aligned_cols=74  Identities=9%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             CcceEEEEEcCC------CCeeeEEEEcCCCCCHHHHHHHHhcc--CCC----------CCceEEEeCCeeCCCCCCccc
Q 017480            2 RSKTQIFIKSPS------NSLTTLTVGANQFETLNHLKRSLLSL--DQS----------LSSLYFTLNGKILDESTPLFK   63 (371)
Q Consensus         2 ~~~MQIFVk~~~------g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~----------~~~q~Li~~Gk~L~D~~tL~~   63 (371)
                      +.+|+|-||-..      |. ....+++.+..||.+|.+.|...  ++.          .....+..||+....+.    
T Consensus         7 ~~~~~v~V~~FA~lre~~g~-~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~----   81 (98)
T 1vjk_A            7 HGSVKVKVKYFARFRQLAGV-DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE----   81 (98)
T ss_dssp             --CEEEEEEECTHHHHHHSS-SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC----
T ss_pred             cCcEEEEEEEhHHHHHHhCC-CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC----
Confidence            456888887543      31 24567777778999999988764  121          23456788998876543    


Q ss_pred             CCCCCCCCeEEEEeeecCC
Q 017480           64 NPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        64 ~~~I~~~sTL~L~lrL~G~   82 (371)
                        -|.+++.|.+...+-||
T Consensus        82 --~L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           82 --ELKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             --BCCTTCEEEEESCC---
T ss_pred             --CCCCCCEEEEECCCCCC
Confidence              46888999887666554

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=83.00  E-value=1.2  Score=35.03  Aligned_cols=68  Identities=12%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             eEEEEEc--CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC-----CceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            5 TQIFIKS--PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL-----SSLYFTLNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         5 MQIFVk~--~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~-----~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      +.|-|.-  -.++  ++.|.++-..||..|..-|.+. +++.     .+.++.--|..|.++.+| ++|+|..|+.|.+
T Consensus         5 I~ITidl~~y~~~--~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L-~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGS--VFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKL-SDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCC--EEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBT-GGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCc--eEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEE-eeCCcCCCCEEEE
Confidence            3444442  3554  7888998899999999988877 6532     245556667778899999 9999999998864

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=82.84  E-value=2.1  Score=32.95  Aligned_cols=59  Identities=20%  Similarity=0.159  Sum_probs=43.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhccC--CCC----------CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           18 TLTVGANQFETLNHLKRSLLSLD--QSL----------SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~g--i~~----------~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ...+++.+..||.+|.+.|....  +..          ....+..||+....+..      |.+++.|.+..++-||
T Consensus        19 ~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~------l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           19 TVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEA------TAAGDELALFPPVSGG   89 (89)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSB------CCTTCEEEEECCCSCC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcc------cCCCCEEEEECCCCCC
Confidence            46788877789999999987762  210          12577789998876543      5888999988888776

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=81.73  E-value=11  Score=30.99  Aligned_cols=78  Identities=9%  Similarity=0.088  Sum_probs=49.0

Q ss_pred             CCcceEEEEEcCC------CCeeeEEEEcCC---CCCHHHHHHHHhcc--CCCC------C----ceEEEeCCeeCC--C
Q 017480            1 MRSKTQIFIKSPS------NSLTTLTVGANQ---FETLNHLKRSLLSL--DQSL------S----SLYFTLNGKILD--E   57 (371)
Q Consensus         1 ~~~~MQIFVk~~~------g~~~t~~l~v~~---~~TV~~lK~~i~~~--gi~~------~----~q~Li~~Gk~L~--D   57 (371)
                      |..+|+|-|+-..      |....+.|++.+   ..||.+|-..|.+.  ++..      .    ...++.||+..+  +
T Consensus         8 ~~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~   87 (114)
T 1wgk_A            8 MAAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLG   87 (114)
T ss_dssp             CCCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred             cCCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence            5567888887543      332355688773   35999998888765  2210      1    123455665322  1


Q ss_pred             CCCcccCCCCCCCCeEEEEeeecCC
Q 017480           58 STPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        58 ~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      +    .+|-|++++.|.+...+-||
T Consensus        88 g----ldt~L~dGDeV~iip~vaGG  108 (114)
T 1wgk_A           88 E----LDYQLQDQDSILFISTLHGG  108 (114)
T ss_dssp             T----TTCBCCSSEEEEEEECSCCC
T ss_pred             C----cCcCCCCCCEEEEeCCCCCC
Confidence            2    35678999999887777777

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=81.51  E-value=4.3  Score=30.40  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=40.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhccC------CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480           18 TLTVGANQFETLNHLKRSLLSLD------QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus        18 t~~l~v~~~~TV~~lK~~i~~~g------i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ..+++ .+..||.+|.+.|....      ++.....+..||+....+.      -|.+++.|.+..++-||
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~------~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDH------PLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTC------BCCTTCEEEEECCCCCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCC------CCCCCCEEEEeCCCCCC
Confidence            34565 45679999999887551      3334567888999876544      46888999887776665

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.91  E-value=1.5  Score=33.62  Aligned_cols=46  Identities=15%  Similarity=0.231  Sum_probs=36.0

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGE  236 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~  236 (371)
                      .-.|+|+...+....+..   .|||.|-..+|...-    ...||.|..+|..
T Consensus        15 i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            347999999886543332   899999999999862    2689999998864

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=80.69  E-value=2.3  Score=46.96  Aligned_cols=66  Identities=15%  Similarity=0.062  Sum_probs=49.6

Q ss_pred             CceeEcCCcccccCCceeEEEEeccC-ccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHHHh
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCG-HVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLK  262 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG-~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak  262 (371)
                      ...|+||||..-|..=   | +-|+| +.+-..++.+.  ....||..+.+++..|+|+   +    -.||.++++-...
T Consensus       889 P~~F~cPIs~~lM~DP---V-ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP---N----~~Lk~~I~~w~~~  957 (968)
T 3m62_A          889 PDEFLDPLMYTIMKDP---V-ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP---N----EELRQKILCFKKQ  957 (968)
T ss_dssp             CGGGBCTTTCSBCSSE---E-ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE---C----HHHHHHHHHHHHH
T ss_pred             cHHhCCcchhhHHhCC---e-EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc---c----HHHHHHHHHHHHH
Confidence            3579999999999862   3 35787 68999999986  4678999999999888875   2    2466666654433

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=80.42  E-value=5.9  Score=37.23  Aligned_cols=76  Identities=4%  Similarity=-0.097  Sum_probs=55.3

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEe--CC--eeCCCCCCcccCCCCCCCCeEE
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTL--NG--KILDESTPLFKNPQIAPLSTLY   74 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~--~G--k~L~D~~tL~~~~~I~~~sTL~   74 (371)
                      |+..|.+-|..++|   ++.+++++..|+.+|=..|... |+ ..+-|-|.|  .|  .+|+.+.+| .+..+.....+.
T Consensus        19 ~~~~~~~~V~lldg---~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i-~~q~~~~~~~~~   94 (314)
T 1h4r_A           19 QPKTFTVRIVTMDA---EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKV-LDHDVSKEEPVT   94 (314)
T ss_dssp             --CEEEEEEECSSC---EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBG-GGSSCCCSSSEE
T ss_pred             CCCeeEEEEEeCCc---eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCH-HHcCCCCCCCEE
Confidence            34568899999999   4668888889999999999999 86 455566666  33  468888888 776666566665


Q ss_pred             EEeeec
Q 017480           75 LRQRVF   80 (371)
Q Consensus        75 L~lrL~   80 (371)
                      |.+|.+
T Consensus        95 l~fr~k  100 (314)
T 1h4r_A           95 FHFLAK  100 (314)
T ss_dssp             EEEEES
T ss_pred             EEEEEE
Confidence            666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.86
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.84
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.83
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.83
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.82
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.77
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.76
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.75
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.72
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.72
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.7
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.69
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.68
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.67
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.64
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.64
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.63
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.62
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.61
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.61
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.6
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.6
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.56
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.55
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.52
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.45
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.37
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.36
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.32
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.31
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.24
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.11
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.07
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	98.96
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.81
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.57
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.12
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.8
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.78
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	97.73
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.63
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.58
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	97.54
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.33
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.28
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.27
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.22
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	96.8
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	96.75
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	96.31
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	96.26
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	95.99
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	95.83
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	95.17
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	94.52
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	94.39
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	94.07
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	93.05
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	92.91
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	92.23
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	91.07
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.71
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	87.1

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=156.64  Aligned_cols=75  Identities=27%  Similarity=0.373  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      ||||||+++|+  +++++|++++||.+||++|+.. |+|+++|+|+|+|++|+|+.+| ++|+|++++||+|.+|||||
T Consensus         1 MqI~Vk~l~G~--~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL-~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSC--EEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCC--EEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCH-HHcCCCCCCEEEEEEecCCC
Confidence            99999999997  8899999999999999999999 9999999999999999999999 99999999999999999987

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.9e-22  Score=155.69  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      .||||||+.+|+  +++|+|++++||++||++|+++ |||+++|+|+|+|+.|+|+.+| ++|+|++++||||++|+||
T Consensus         2 ~M~I~Vk~~~g~--t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL-~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSY--GFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTV-QNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSS--CEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBG-GGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCC--EEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCH-HHcCCCCCCEEEEEeccCC
Confidence            399999999997  8899999999999999999999 9999999999999999999999 9999999999999999998

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.6e-21  Score=154.80  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      +.||||||+++|+  +++|+|++++||.+||++|+.+ |||+++|+|+|+|++|+|+.+| .+|+|.+++||||++|++|
T Consensus         6 ~~mqI~Vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL-~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           6 SGIQVFVKNPDGG--SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGL-GIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             SSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBH-HHHTCCTTEEEEEEECSCC
T ss_pred             CcEEEEEECCCCC--EEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcH-HHcCCCCCCEEEEEecCCC
Confidence            5799999999996  7899999999999999999999 9999999999999999999999 9999999999999999998


Q ss_pred             CCCCC
Q 017480           82 GGGDG   86 (371)
Q Consensus        82 ~~~~~   86 (371)
                      |-..|
T Consensus        83 gp~sG   87 (87)
T d1wh3a_          83 GPSSG   87 (87)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            76554

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.1e-21  Score=148.41  Aligned_cols=74  Identities=24%  Similarity=0.429  Sum_probs=71.4

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      +.||||||+.+|+  +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|||.+++||||++||
T Consensus         2 ~~~qi~Vk~~~G~--~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL-~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCC--EEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeC
Confidence            5799999999997  7889999999999999999999 9999999999999999999999 99999999999999997

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=4.3e-21  Score=147.36  Aligned_cols=72  Identities=17%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      ||||||+++|+  +++|+|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||
T Consensus         1 M~I~Vk~~~G~--~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL-~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGK--EIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTA-KDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcH-HHcCCCCCCEEEEEeeC
Confidence            99999999997  8899999999999999999999 9999999999999999999999 99999999999999997

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-20  Score=145.36  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            5 TQIFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      ||||||+++|+ .+++++ +++++||++||++|+++ |||+++|||+|+|++|+|+.+| ++|||++++||||++|+
T Consensus         1 M~I~Vktl~Gk-~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGR-QTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL-FDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSS-CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-TTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCC-cEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcH-HHcCCCCCCEEEEEEEc
Confidence            99999999996 467785 88999999999999999 9999999999999999999999 99999999999999997

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.8e-19  Score=138.81  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             eEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            5 TQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      ||||||+++|+ .++++ +|++++||++||++|++. |||+++|||+|+|++|+|+.+| ++|||.+++||||++|.
T Consensus         1 M~I~Vk~l~G~-~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL-~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGS-KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTL-FDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCS-CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBH-HHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCC-ceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCH-HHcCCCCCCEEEEEEcc
Confidence            99999999996 46777 599999999999999999 9999999999999999999999 99999999999999984

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.4e-19  Score=137.98  Aligned_cols=75  Identities=15%  Similarity=0.157  Sum_probs=71.4

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      .||||||+.+|+  +++|+|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||+++...
T Consensus         3 e~qi~Vk~~~G~--~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL-~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           3 ECQLRLRLSTGK--DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKF-EELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             SEEEEEEETTTE--EEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHH-HHCCCSSSCEEEEECCCSS
T ss_pred             eEEEEEEcCCCC--EEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcH-HHcCCCCCCEEEEEecCCC
Confidence            599999999996  8899999999999999999999 9999999999999999999999 9999999999999998653

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-19  Score=137.77  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      ||||||+++|+  +++++|++++||.+||++|++. |+|+++|||+|+|+.|+|+.+| .+|+| .++||||++|.
T Consensus         1 m~I~Vk~~~g~--~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL-~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQ--TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKL-QEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBH-HHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCC--EEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCH-HHhCC-CCCEEEEEecC
Confidence            99999999997  7889999999999999999999 9999999999999999999999 99999 47999999874

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-17  Score=134.40  Aligned_cols=76  Identities=21%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C---CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D---QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g---i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ||||||+++|+  +++|+|++++||.+||++|++. |   +|+++|+|+|+|+.|+|+.+| ++|||.+++||+|+++-.
T Consensus         1 M~I~vk~~~g~--~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL-~~y~I~~~s~i~lv~~~~   77 (95)
T d1uela_           1 MQVTLKTLQQQ--TFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL-KEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCC--EEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBG-GGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCC--EEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcH-HHcCCCCCCEEEEEECCC
Confidence            99999999997  8899999999999999999987 5   899999999999999999999 999999999999999865


Q ss_pred             CCC
Q 017480           81 GGG   83 (371)
Q Consensus        81 G~~   83 (371)
                      ...
T Consensus        78 ~~~   80 (95)
T d1uela_          78 KAV   80 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=3.7e-18  Score=141.69  Aligned_cols=80  Identities=13%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             ceEEEEEcCC-CCeeeEEEEcCC-CCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            4 KTQIFIKSPS-NSLTTLTVGANQ-FETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         4 ~MQIFVk~~~-g~~~t~~l~v~~-~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ++||+|++.. |+  +++|+|.+ ++||.+||++|++. |+|+++|+|+|+|+.|.|+.+| ++|||.+++||||++|+|
T Consensus        29 ti~V~v~~~~~G~--~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~ynI~~gsti~L~lr~r  105 (111)
T d1we6a_          29 TIRVSKPNENDGQ--FMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSL-AHYNVGAGEILTLSLRER  105 (111)
T ss_dssp             EEEECCTTCSSSC--CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBT-TTTTCSSSCEEEEECSSC
T ss_pred             EEEEEcccCCCCe--EEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCH-HHcCCCCCCEEEEEeeCC
Confidence            4788888764 65  88899986 89999999999999 9999999999999999999999 999999999999999999


Q ss_pred             CCCCCC
Q 017480           81 GGGGDG   86 (371)
Q Consensus        81 G~~~~~   86 (371)
                      ||-.+|
T Consensus       106 GG~~~~  111 (111)
T d1we6a_         106 SGPSSG  111 (111)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            987765

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=5.8e-18  Score=130.04  Aligned_cols=70  Identities=11%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +||||||+..|+  +++++|.+++||.+||++|++. |+|+++|+|+|+|+.|+|+.+| ++|||++++||||.
T Consensus         1 mi~i~vk~~~Gk--~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL-~~y~I~~gstl~L~   71 (73)
T d1m94a_           1 MIEVVVNDRLGK--KVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISL-EDYEVHDQTNLELY   71 (73)
T ss_dssp             CEEEEEEETTTE--EEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBH-HHHTCCTTEEEEEE
T ss_pred             CeEEEEECCCCC--EEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcH-HHcCCCCCCEEEEE
Confidence            489999999997  8899999999999999999999 9999999999999999999999 99999999999985

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.3e-17  Score=126.45  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=66.8

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      +|+|+||+.+.   +++|+|++++||.+||++|+.. |+|+++|+|+|+|+.|+|+.+| .+|+|.+++||||+.|
T Consensus         1 si~I~Vk~~~~---~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSGQD---KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV-ESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEETTE---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCe---EEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcH-HHCCCCCCCEEEEEee
Confidence            59999999654   5889999999999999999999 9999999999999999999999 9999999999999875

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.2e-17  Score=127.64  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=68.0

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C---CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D---QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g---i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      +.|||+||+++|+  +++|+|++++||.+||++|++. |   +|+++|||+|+|+.|+|+.+| .+|||.++++|+|.+
T Consensus         1 s~~~i~vk~l~g~--~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL-~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           1 SAVTITLKTLQQQ--TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI-RDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCCEEEEETTTE--EEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBT-TTTCCCTTSCEEEEE
T ss_pred             CcEEEEEECCCCC--EEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcH-HHcCCCCCCEEEEEE
Confidence            4699999999996  8999999999999999999987 7   899999999999999999999 999999999998875

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-17  Score=130.02  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=68.9

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      ..|||+||+..+   .++++|++++||.+||++|++. |+|+++|+|+|+|+.|+|+.+| ++|||.+++||||++|-.
T Consensus         6 ~~i~I~Vkt~~~---~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL-~~y~i~~gsti~lv~r~~   80 (84)
T d1yqba1           6 HLIKVTVKTPKD---KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL-AQCGVRDGLTVHLVIKRQ   80 (84)
T ss_dssp             TEEEEEEECSSC---EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBH-HHHTCCTTCEEEEEECCC
T ss_pred             CEEEEEEEcCCC---cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcH-HHcCCCCCCEEEEEECCC
Confidence            359999999876   3678899999999999999999 9999999999999999999999 999999999999999865

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.4e-17  Score=124.68  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe--CCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL--NGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~--~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      .||.||+++|+  +++|+|++++||.+||++|+.. |+|+++|+|+|  .|++|.|+.+| ++|||.+++||||+++
T Consensus         1 ~~l~Vk~l~G~--~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL-~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGN--EFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL-ASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSC--EEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCS-GGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcH-HHcCCCCCCEEEEEEE
Confidence            48999999997  7899999999999999999999 99999999999  69999999999 9999999999999986

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=126.48  Aligned_cols=67  Identities=12%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480           12 PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus        12 ~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ++|+  +++|+|++++||++||++|++. |+|+++|+|+|+|+.|.|+.+| ++|||.+++||||++|+||
T Consensus        19 L~G~--~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL-~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQ--VLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSL-AYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSC--EEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBH-HHHTCCTTEEEEEEESCCC
T ss_pred             cCCe--EEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCH-HHcCCCCCCEEEEEEecCC
Confidence            6786  7889999999999999999999 9999999999999999999999 9999999999999999998

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.5e-16  Score=128.21  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=67.8

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ..|||+||+..++   ++|+|++++||.+||++|+.. |+|+++|+|+|+|+.|.|+.+| .+|||.+++||||++|
T Consensus        31 ~~i~V~Vk~~~~~---~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL-~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          31 KIIKVTVKTPKEK---EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTL-IQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCEEEEEECSSCE---EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCG-GGTTCSSSEEEEEEEC
T ss_pred             CeEEEEEECCCcc---EEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcH-HHcCCCCCCEEEEEEC
Confidence            4699999998874   678999999999999999999 9999999999999999999999 9999999999999987

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.1e-16  Score=130.48  Aligned_cols=72  Identities=14%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      .+||+||+..|+  ++.|+|++++||.+||++|+++ |+|+++|+|+|+|++|+|+.+| .+|||.+++||+|..|
T Consensus        28 ~i~V~V~~~~Gk--~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          28 MIEVVCNDRLGK--KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL-GDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEEECSSSS--CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBH-HHHTCCTTEEEEEECC
T ss_pred             eEEEEEECCCCC--EEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCH-HHcCCCCCCEEEEEEC
Confidence            369999999997  7889999999999999999999 9999999999999999999999 9999999999999754

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=9.3e-17  Score=125.99  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      ..|||+||+..++   ++++|++++||.+||++|++. |+|+++|+|+|+|+.|.|+.+| ++|||.+++||||++|
T Consensus         9 ~~i~v~Vk~~~~~---~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL-~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           9 RIIRVSVKTPQDC---HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDIL-SQRGILDGSTVHVVVR   81 (83)
T ss_dssp             CEEEEEEECSSSE---EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCH-HHHTCCTTEEEECCBC
T ss_pred             CeEEEEEEcCCCc---EEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcH-HHcCCCCCCEEEEEEe
Confidence            3599999998774   578888899999999999999 9999999999999999999999 9999999999999887

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6.5e-17  Score=132.59  Aligned_cols=75  Identities=16%  Similarity=0.117  Sum_probs=69.8

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceE---------------EEeCCeeCCCC-CCcccCC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLY---------------FTLNGKILDES-TPLFKNP   65 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~---------------Li~~Gk~L~D~-~tL~~~~   65 (371)
                      +.|+|+||+++|.  +++|+|++++||.+||++|+.. +||+++|+               |+|+|+.|.|+ .+| .+|
T Consensus         6 s~M~v~Vk~~~G~--~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL-~~~   82 (105)
T d1v2ya_           6 SGMTVRVCKMDGE--VMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKL-RDY   82 (105)
T ss_dssp             CSEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBH-HHH
T ss_pred             CcEEEEEEeCCCC--EEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCH-HHc
Confidence            4699999999997  7889999999999999999999 99999987               99999999765 589 999


Q ss_pred             CCCCCCeEEEEeeec
Q 017480           66 QIAPLSTLYLRQRVF   80 (371)
Q Consensus        66 ~I~~~sTL~L~lrL~   80 (371)
                      +|.+++||||+.|++
T Consensus        83 gI~~g~~l~lv~r~~   97 (105)
T d1v2ya_          83 GIRNRDEVSFIKKLG   97 (105)
T ss_dssp             TCCSSEEEEEEECSC
T ss_pred             CCCCCCEEEEEEecC
Confidence            999999999999987

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.1e-15  Score=127.59  Aligned_cols=75  Identities=11%  Similarity=0.016  Sum_probs=67.1

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHH--------hcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSL--------LSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLY   74 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i--------~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~   74 (371)
                      .|||+||+++|+  ++.++|++++||.+||.+|        ++. ++|+++|||+|.|+.|.|+.+| .+|+|.+++|++
T Consensus        16 ~i~i~v~~l~Gk--~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL-~~~~i~~g~~~~   92 (116)
T d1wgha_          16 MINLRLILVSGK--TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL-GALKLPFGKTTV   92 (116)
T ss_dssp             SEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBT-TTTTCCSSCEEE
T ss_pred             eEEEEEEEcCCC--EEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCH-HHcCCCCCCEEE
Confidence            499999999997  7888999999999999999        456 8999999999999999999999 999999999865


Q ss_pred             EEeeecC
Q 017480           75 LRQRVFG   81 (371)
Q Consensus        75 L~lrL~G   81 (371)
                      |.|.++.
T Consensus        93 lhlv~r~   99 (116)
T d1wgha_          93 MHLVARE   99 (116)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            5555553

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.9e-15  Score=121.84  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCC-CCCCcccCCCCCCCCeEEEEeeec
Q 017480            2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILD-ESTPLFKNPQIAPLSTLYLRQRVF   80 (371)
Q Consensus         2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~~~sTL~L~lrL~   80 (371)
                      -++|+|+||+++|+  .+.|+|++++||.+||.+|+.  +++++|+|+|+|+.|. |+.+| .+|+|.++++|||+++..
T Consensus         5 ~s~m~i~vK~l~~~--~~~v~v~~~~TV~~lK~~i~~--~~~~~qrLi~~Gk~L~dd~~tL-~~y~i~~g~~v~l~~~~~   79 (95)
T d1wiaa_           5 SSGINVRLKFLNDT--EELAVARPEDTVGTLKSKYFP--GQESQMKLIYQGRLLQDPARTL-SSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             CCSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHSS--STTTTCEEEETTEECCCSSCBT-TTTTCCTTEEEEEECCCC
T ss_pred             CCcEEEEEEcCCCC--EEEEEECCcCcHHHHHHHHhc--CCcceeEEEECCEEcccCCCCH-HHcCCCCCCEEEEEEcCC
Confidence            46899999999997  788999999999999999986  5779999999999996 66799 999999999999999988


Q ss_pred             CCCCCCcc
Q 017480           81 GGGGDGGA   88 (371)
Q Consensus        81 G~~~~~~s   88 (371)
                      ++-..+.+
T Consensus        80 ~~~~~~~~   87 (95)
T d1wiaa_          80 GAAVSGPS   87 (95)
T ss_dssp             CCCCCCCC
T ss_pred             CCCCCCCC
Confidence            77655544

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=1.5e-15  Score=123.83  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             CCcceEEEEEcCCCCeeeE-EEEcCCCCCHHHHHHHHhc-----c-CCC--CCceEEEeCCeeCCCCCCcccCCCCCCCC
Q 017480            1 MRSKTQIFIKSPSNSLTTL-TVGANQFETLNHLKRSLLS-----L-DQS--LSSLYFTLNGKILDESTPLFKNPQIAPLS   71 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~-~l~v~~~~TV~~lK~~i~~-----~-gi~--~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s   71 (371)
                      +...|+|+||+++|+  .+ .+.+++++||.+||++|++     . |+|  +++|||||+||+|+|+.|| ++|+|..+.
T Consensus         4 ~~~~i~I~~r~~~G~--~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL-~dy~i~~g~   80 (101)
T d1se9a_           4 VHNQLEIKFRLTDGS--DIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTV-KDYRSPVSN   80 (101)
T ss_dssp             SCCCEEEEEEETTSC--EEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBG-GGGSCCTTS
T ss_pred             ccceEEEEEEeCCCC--eecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCH-HHcCCCCCC
Confidence            457899999999997  34 6889999999999999975     3 787  7899999999999999999 999999997


Q ss_pred             ------eEEEEeeec
Q 017480           72 ------TLYLRQRVF   80 (371)
Q Consensus        72 ------TL~L~lrL~   80 (371)
                            |+||++|-.
T Consensus        81 ~~~~~~tmHlVvrpp   95 (101)
T d1se9a_          81 LAGAVTTMHVIIQAP   95 (101)
T ss_dssp             CTTCCEEEEEEECCC
T ss_pred             cCCCceEEEEEeCCC
Confidence                  999999854

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.7e-16  Score=125.68  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCC-------CCeEEEEe
Q 017480            6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAP-------LSTLYLRQ   77 (371)
Q Consensus         6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~-------~sTL~L~l   77 (371)
                      ||||+...++ .++.|+|++++||.+||++|+++ |||+++|||+|+|++|+|+.+| .+|||.+       .++++|.+
T Consensus         1 qifv~i~~~k-~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL-~dYgI~~~~~~~~~~~~~~l~~   78 (103)
T d2c9wb1           1 DVFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTL-GECGFTSQTARPQAPATVGLAF   78 (103)
T ss_dssp             CEEEEEEEBT-EEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBH-HHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CEEEEEeCCC-EEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCcccccccCCcEEEEEE
Confidence            7899888887 57889999999999999999999 9999999999999999999999 9999954       45899988


Q ss_pred             eecCC
Q 017480           78 RVFGG   82 (371)
Q Consensus        78 rL~G~   82 (371)
                      |..|+
T Consensus        79 ~~~~~   83 (103)
T d2c9wb1          79 RADDT   83 (103)
T ss_dssp             EETTE
T ss_pred             ecCCC
Confidence            87764

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.3e-15  Score=119.75  Aligned_cols=82  Identities=21%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C--CCCCceEEEeCCeeCCCCCCcccCCCCCCCC--eEEEEee
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D--QSLSSLYFTLNGKILDESTPLFKNPQIAPLS--TLYLRQR   78 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g--i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s--TL~L~lr   78 (371)
                      .|+|+||+.+++...+++++++++||.+||++|++. +  +|+++|||+|+|+.|+|+.+| .+|++...+  ||||+++
T Consensus         7 ~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L-~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL-RDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCH-HHHSCSSSCSEEEEEECC
T ss_pred             cEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCH-HHhCcccCCCCEEEEEec
Confidence            499999999998777999999999999999999987 5  899999999999999999999 999766554  9999999


Q ss_pred             ecCCCCCC
Q 017480           79 VFGGGGDG   86 (371)
Q Consensus        79 L~G~~~~~   86 (371)
                      .+.+-..|
T Consensus        86 ~~~~p~sg   93 (93)
T d1wgda_          86 VKSGPSSG   93 (93)
T ss_dssp             CCCCCCCC
T ss_pred             CCCCCCCC
Confidence            98755433

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.5e-15  Score=122.54  Aligned_cols=79  Identities=13%  Similarity=0.029  Sum_probs=71.6

Q ss_pred             cceEEEE----EcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC-CCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFI----KSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD-ESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFV----k~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +.|.|+|    |++++.  +++|+|++++||.+||++|+.. |||+++|+|+|+|+.|. |+.+| ++|||.++++|+|+
T Consensus         6 ~~m~itV~~~~~~~~~~--t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL-~~~gI~~g~~i~l~   82 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEV--TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSL-GSYGLKDGDMVVLL   82 (102)
T ss_dssp             CCEEEEEEECCCCCCCC--EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBH-HHHTCCTTEEEEEC
T ss_pred             CCEEEEEEecccCCCCC--EEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCH-HHcCCCCCCEEEEE
Confidence            4699999    999996  8999999999999999999999 99999999999999995 66799 99999999999998


Q ss_pred             eeecCCCC
Q 017480           77 QRVFGGGG   84 (371)
Q Consensus        77 lrL~G~~~   84 (371)
                      .|..++..
T Consensus        83 ~r~~~~~~   90 (102)
T d1v5oa_          83 QKDNVGLR   90 (102)
T ss_dssp             BCCCCCCS
T ss_pred             ECCCCCCC
Confidence            88765543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.7e-15  Score=119.92  Aligned_cols=78  Identities=12%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             cceEEEE--EcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480            3 SKTQIFI--KSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV   79 (371)
Q Consensus         3 ~~MQIFV--k~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL   79 (371)
                      .+|||||  |...|+  ++.|+|..++||.+||.+|++. |+|+++|+|+|+|+.|+|+.+| .+|||.++++|++..+-
T Consensus        16 ati~V~~~~~~~~g~--~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL-~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          16 ATIEVFLPPRLKKDR--KNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-EEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             EEEEEECCTTTCCSS--SEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBH-HHHTCCSSEEEEEECCC
T ss_pred             EEEEEEEeeccCCCe--EEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCH-HHcCCCCCCEEEEEEcC
Confidence            3689999  667775  8899999999999999999999 9999999999999999999999 99999999999766544


Q ss_pred             cCCC
Q 017480           80 FGGG   83 (371)
Q Consensus        80 ~G~~   83 (371)
                      ...+
T Consensus        93 ~~~~   96 (100)
T d1wjua_          93 QSSG   96 (100)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            4333

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.9e-14  Score=114.63  Aligned_cols=70  Identities=17%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      +.|+|.||...++  .+.|+|++++||.+||++|++. |||+++|+|+|.|+.|.|+ +| .+|+|.++++|+|+
T Consensus         6 ~~~~I~VK~~~~~--~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL-~~~gi~~g~~i~lv   76 (96)
T d1wgga_           6 SGYSVTVKWGKEK--FEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DW-GNIKMKNGMTVLMM   76 (96)
T ss_dssp             CEEEEEEEETTEE--EEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CC-CSCCCCSSCEEECC
T ss_pred             CceEEEEEeCCCC--EEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cH-HHCCCCCCCEEEEE
Confidence            4699999998885  5678888899999999999999 9999999999999999986 79 99999999999885

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.2e-13  Score=106.92  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             cceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhcc-CCCCCceEEE---eCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            3 SKTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLSL-DQSLSSLYFT---LNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~~-gi~~~~q~Li---~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      +.|+|+||....   .+.+ +|++++||.+||++|++. |+|+++|+|+   |.|+.|+|+.+| .+|+|.+++||+|+.
T Consensus         6 ~~~~i~Vk~~~~---~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL-~~~~i~~g~~i~lv~   81 (90)
T d1v5ta_           6 SGLPIIVKWGGQ---EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL-GALKLKPNTKIMMMG   81 (90)
T ss_dssp             CSCCEEEEETTE---EEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBH-HHHTCCTTEEEEEEC
T ss_pred             CcEEEEEEECCe---EEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcH-HHcCCCCCCEEEEEe
Confidence            469999998544   4666 799999999999999999 9999999999   699999999999 999999999999874


Q ss_pred             e
Q 017480           78 R   78 (371)
Q Consensus        78 r   78 (371)
                      +
T Consensus        82 s   82 (90)
T d1v5ta_          82 T   82 (90)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.8e-13  Score=109.78  Aligned_cols=75  Identities=13%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      ..|+|.|+- .++  +|.|+|++++||.+||++|++. |+|+++|+|+|.|+ |.|+.+| .+|+|.++++|+|+.+..+
T Consensus        16 ~~i~v~V~~-~~k--~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL-~~~~I~~gs~i~lvgs~~~   90 (95)
T d1v86a_          16 ELVDLKIIW-NKT--KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTL-REIKVTSGAKIMVVGSTIS   90 (95)
T ss_dssp             CCEEEEEEE-TTE--EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBH-HHHCCCTTEEEEECCSSCC
T ss_pred             cEEEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcH-HHCCCCCCCEEEEEecCCC
Confidence            458999995 664  7899999999999999999999 99999999999997 8999999 9999999999999866544


Q ss_pred             C
Q 017480           82 G   82 (371)
Q Consensus        82 ~   82 (371)
                      |
T Consensus        91 g   91 (95)
T d1v86a_          91 G   91 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=102.02  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             ceEEEEEcCCCCeeeEEEEc-----CCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC-CCCCcccCCCCCCCCeEEEE
Q 017480            4 KTQIFIKSPSNSLTTLTVGA-----NQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD-ESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v-----~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .|+|.|+...-   .+.+++     ++++||++||++|++. |+|+++|+|+|+|+.|. |+.+| .+|||.++++|+|+
T Consensus         1 gi~i~V~~~~~---~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL-~~~gi~~g~~i~lv   76 (81)
T d1wxva1           1 GLTVTVTHSNE---KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPL-SALGIQDGCRVMLI   76 (81)
T ss_dssp             SEEEEEECSSS---EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBH-HHHTCCSSEEEEEE
T ss_pred             CEEEEEEECCe---eEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCCh-HHCCCCCCCEEEEE
Confidence            48999987544   355555     5688999999999999 99999999999999995 67899 99999999999997


Q ss_pred             ee
Q 017480           77 QR   78 (371)
Q Consensus        77 lr   78 (371)
                      .|
T Consensus        77 ~~   78 (81)
T d1wxva1          77 GK   78 (81)
T ss_dssp             SC
T ss_pred             Ee
Confidence            65

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.31  E-value=2.7e-12  Score=99.12  Aligned_cols=75  Identities=12%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG   82 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~   82 (371)
                      .+.|.|++. |.  .+.+.|..++++..|+..+++. |+++++++|+|+|+.|.++.|+ ++|+|.+++||++.+|++||
T Consensus         4 ~I~ikv~~~-~~--~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~-~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSDG-SS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEESS-SC--EEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECCC-Ce--EEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCH-HHCCCCCCCEEEEEEeccCC
Confidence            477888874 43  4667888899999999999999 9999999999999999999999 99999999999999999998

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=6e-12  Score=100.84  Aligned_cols=77  Identities=18%  Similarity=0.086  Sum_probs=66.3

Q ss_pred             cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-------CCCCCCcccCCCCCCCCeEE
Q 017480            3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-------LDESTPLFKNPQIAPLSTLY   74 (371)
Q Consensus         3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-------L~D~~tL~~~~~I~~~sTL~   74 (371)
                      +.|+|||++...+ ..+...++.+.||.+||++|+.. |+|+++|+|+|.|++       ++|+.+| .+|+|.++++||
T Consensus         6 s~v~v~I~s~~~~-~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L-~~y~i~dg~~ih   83 (95)
T d1v6ea_           6 SGVMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALL-GSYPVDDGCRIH   83 (95)
T ss_dssp             CCEEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBT-TSSSCCTTCEEE
T ss_pred             CcEEEEEEECCCC-cEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCH-HHCCCCCCCEEE
Confidence            4699999994332 45677788899999999999999 999999999999984       6899999 999999999999


Q ss_pred             EEeeecC
Q 017480           75 LRQRVFG   81 (371)
Q Consensus        75 L~lrL~G   81 (371)
                      |+.+-..
T Consensus        84 lvd~~p~   90 (95)
T d1v6ea_          84 VIDHSGS   90 (95)
T ss_dssp             EBCCSCC
T ss_pred             EEeCCCC
Confidence            9876543

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.6e-11  Score=91.19  Aligned_cols=75  Identities=16%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480            4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG   81 (371)
Q Consensus         4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G   81 (371)
                      .|+|.|++++|+  .+.+.|..++++..|+..++.. |+++++++|+|+|++|.++.|+ .+++|.++.+|++.+|..|
T Consensus         2 ~I~ikv~~~dg~--~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~-~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTTCC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCH-HHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEecCC
Confidence            589999999997  5677788888999999999999 9999999999999999999999 9999999999999999886

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=5.2e-11  Score=95.43  Aligned_cols=53  Identities=17%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHhcc-C--CC-CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480           25 QFETLNHLKRSLLSL-D--QS-LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR   78 (371)
Q Consensus        25 ~~~TV~~lK~~i~~~-g--i~-~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr   78 (371)
                      .+.||.+||+.|... .  +| +++|+|+|+|+.|+|+.+| .+|||.+++||||+.|
T Consensus        36 ~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL-~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          36 GGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTL-DFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBH-HHHTCCTTCEEEEEES
T ss_pred             CccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccH-HHcCCCCCCEEEEEEe
Confidence            367999999999876 3  44 6999999999999999999 9999999999999987

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=6.5e-10  Score=88.87  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=59.1

Q ss_pred             eEEEEEc---CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-------CC-CCCCcccCCCCCCCCe
Q 017480            5 TQIFIKS---PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-------LD-ESTPLFKNPQIAPLST   72 (371)
Q Consensus         5 MQIFVk~---~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-------L~-D~~tL~~~~~I~~~sT   72 (371)
                      ++|.|+.   .+++  ++++.+..++||.+||.+|+.. |||+++|+|+|.|+.       |+ |+.+| .+|+|.++++
T Consensus        10 iti~i~~~~~~~~~--~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL-~~YgI~dg~~   86 (97)
T d1wjna_          10 LTLKIKCSNQPERQ--ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPL-QFYSVENGDC   86 (97)
T ss_dssp             EEEEEEESSCSSSC--CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBS-GGGTCCTTCE
T ss_pred             EEEEEEeCCCCCCc--eEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCH-hhccCCCCCE
Confidence            6788875   3444  6788888899999999999999 999999999999973       55 67899 9999999999


Q ss_pred             EEEE
Q 017480           73 LYLR   76 (371)
Q Consensus        73 L~L~   76 (371)
                      |++.
T Consensus        87 I~V~   90 (97)
T d1wjna_          87 LLVR   90 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.81  E-value=8.5e-09  Score=81.20  Aligned_cols=80  Identities=19%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-------CCCCCCcccCCCCCCCCe
Q 017480            1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-------LDESTPLFKNPQIAPLST   72 (371)
Q Consensus         1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-------L~D~~tL~~~~~I~~~sT   72 (371)
                      |..-.-|.|.+.... .+....++.+.||.+||.+|+.. |+|++.|+|+|.|+.       ++|+.+| .+|||.+|++
T Consensus         1 ms~~~~l~it~~~t~-~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L-~~ygi~dG~~   78 (90)
T d1t0ya_           1 MTEVYDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSL-KDLGVRDGYR   78 (90)
T ss_dssp             CCCEEEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBT-TTTTCCSSEE
T ss_pred             CCcEEEEEEEECCCc-cEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCH-HHCCCCCCCE
Confidence            555556777764433 23456678889999999999999 999999999999973       4688999 9999999999


Q ss_pred             EEEEeeecCCC
Q 017480           73 LYLRQRVFGGG   83 (371)
Q Consensus        73 L~L~lrL~G~~   83 (371)
                      ||| +-..||-
T Consensus        79 Ihv-vd~~~~~   88 (90)
T d1t0ya_          79 IHA-VDVTGGN   88 (90)
T ss_dssp             EEE-EECTTCC
T ss_pred             EEE-EeCCCCC
Confidence            998 4455543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=2.1e-08  Score=72.13  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=46.8

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN  245 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~  245 (371)
                      +|||++..|..   -|.+..|||||..+++.+.  ....||+|+++++.+|+|+|.|+
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipik~~   56 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS   56 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhceeCCCC
Confidence            79999999975   4666779999999999987  36789999999999999999985

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=8.6e-07  Score=63.40  Aligned_cols=53  Identities=21%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             cccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeee
Q 017480          121 NCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVK  173 (371)
Q Consensus       121 ~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lk  173 (371)
                      .|+|+++++.+||+...-|++|.++.|.+||..++.-|..++..+.+||++++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhceeCC
Confidence            59999999999988877899999999999999888788889999999999886

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.3e-05  Score=58.55  Aligned_cols=68  Identities=12%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL   75 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L   75 (371)
                      +.|.|++.+|+  .+.+.|..++++..|....+.. ++++.+.+|+|+|..|.++.|. .+.++..+.+|++
T Consensus         2 I~lkv~~~~g~--~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp-~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSC--EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCT-TTTTCCTTEEEEE
T ss_pred             EEEEEECCCCC--EEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCH-HHcCCCCCCEEEE
Confidence            57899999997  6778888899999999998888 9999999999999999988999 9999999999986

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.2e-05  Score=63.55  Aligned_cols=64  Identities=11%  Similarity=0.040  Sum_probs=48.3

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHH
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEK  260 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~  260 (371)
                      ..|+||||+..|..   -|.+..|||.|...||...  ....||+|++++..+|+++ |+      .|+..+++-.
T Consensus        21 ~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~p-N~------~Lr~~I~~~~   86 (98)
T d1wgma_          21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP-NT------ELKEKIQRWL   86 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE-CH------HHHHHHHHHH
T ss_pred             HHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcc-hH------HHHHHHHHHH
Confidence            35999999999986   3545455678999999996  3568999999999888865 32      4566665544

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=1.6e-05  Score=62.54  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=54.4

Q ss_pred             EEEEcCCCCeeeEEEEcCC-CCCHHHHHHHHhcc-CCCCCceEEEeC--------------CeeCC-CCCCcccCCCCCC
Q 017480            7 IFIKSPSNSLTTLTVGANQ-FETLNHLKRSLLSL-DQSLSSLYFTLN--------------GKILD-ESTPLFKNPQIAP   69 (371)
Q Consensus         7 IFVk~~~g~~~t~~l~v~~-~~TV~~lK~~i~~~-gi~~~~q~Li~~--------------Gk~L~-D~~tL~~~~~I~~   69 (371)
                      |-||+-+|   +..|+|+. ..||.+||..|++. +||.++|.|+.+              =..|. |..+| ..+||..
T Consensus         3 iRiRsrdG---~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L-~sl~i~h   78 (94)
T d1wf9a1           3 LRVRSRDG---LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRI-SSLNLAH   78 (94)
T ss_dssp             EEEECSSC---EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBG-GGTCCCT
T ss_pred             EEEEecCC---ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCH-HHcCccC
Confidence            67899999   67888865 67999999999999 999999999654              23354 45668 9999999


Q ss_pred             CCeEEEE
Q 017480           70 LSTLYLR   76 (371)
Q Consensus        70 ~sTL~L~   76 (371)
                      ||.|+|.
T Consensus        79 GsivyL~   85 (94)
T d1wf9a1          79 GSMVYLA   85 (94)
T ss_dssp             TCEEECC
T ss_pred             ceEEEEE
Confidence            9988874

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.73  E-value=3.1e-05  Score=58.16  Aligned_cols=53  Identities=17%  Similarity=0.262  Sum_probs=43.3

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecC
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILING  244 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp  244 (371)
                      ..|.|||+...|..-   |.+ +|||+|+..+|.+.-   ...||.|+.++...|+++ |.
T Consensus         7 ~~l~CpIc~~~m~dP---V~~-~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p-N~   62 (78)
T d1t1ha_           7 EYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP-NY   62 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE-CT
T ss_pred             ccCCCcCcCchhhCc---eEc-cCCCcchHHHHHHHHHHCCCCCCcccccCCcccccc-hH
Confidence            468999999999763   434 899999999999853   357999999999988765 44

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.4e-05  Score=62.59  Aligned_cols=49  Identities=16%  Similarity=0.358  Sum_probs=42.1

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCce
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK  239 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~Di  239 (371)
                      .+.|||+...|..-   |.+.+|||+|+..|+.+.-...||+|..++...|+
T Consensus        22 ~l~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l   70 (97)
T d1jm7b_          22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDL   70 (97)
T ss_dssp             TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSC
T ss_pred             cCCCccCCchhhcC---ceeCCCCCchhHHHHHHHHhccccccCCcCchhhC
Confidence            46799999999753   45668999999999999888889999999988775

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.9e-05  Score=59.96  Aligned_cols=52  Identities=23%  Similarity=0.510  Sum_probs=43.7

Q ss_pred             eEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecC
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILING  244 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp  244 (371)
                      .+|||+...+..    .++-+|||+|+..++...-   ...||+|..++...+.|.|.|
T Consensus        24 ~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i~~   78 (79)
T d1fbva4          24 QLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP   78 (79)
T ss_dssp             TBCTTTSSSBCC----EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSCCC
T ss_pred             CCCccCCCcCCC----eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCceeecCC
Confidence            469999987764    4456899999999999862   457999999999999988887

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=2.8e-05  Score=58.78  Aligned_cols=51  Identities=12%  Similarity=-0.033  Sum_probs=41.8

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL  241 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~  241 (371)
                      ..|.|||+...|..-   |. -+|||+|+..+|.+.-   ...||.|+.++...|+++
T Consensus         6 ~~l~CpIc~~l~~dP---v~-~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~p   59 (80)
T d2c2la2           6 DYLCGKISFELMREP---CI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP   59 (80)
T ss_dssp             STTBCTTTCSBCSSE---EE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred             ccccCcCcCchhhhh---cc-cCCcCeecHHHHHHHHhcCCccCCCcccccccccccc
Confidence            358999999999762   43 4899999999999862   457999999999887664

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8e-05  Score=58.69  Aligned_cols=48  Identities=19%  Similarity=0.454  Sum_probs=38.6

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCce
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDK  239 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~Di  239 (371)
                      .+.|||+...|..-   | ..+|||+|+..|+.+.-     ...||+|..++...|+
T Consensus        21 ~l~CpIC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l   73 (103)
T d1jm7a_          21 ILECPICLELIKEP---V-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (103)
T ss_dssp             HTSCSSSCCCCSSC---C-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CcCCCccCchhCCe---E-EcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhC
Confidence            46799999988753   2 24899999999999862     2479999999988775

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.9e-05  Score=54.29  Aligned_cols=52  Identities=15%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             eEcCCccccc-CCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceE
Q 017480          189 FQCPITGLEF-NGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKI  240 (371)
Q Consensus       189 ~~CPVT~~e~-ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI  240 (371)
                      ..|||+...+ .+....+++-+|||+|...+|.+.-   +..||+|.+++...|+-
T Consensus         4 ~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~   59 (65)
T d1g25a_           4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence            3699998775 2333344567999999999999972   45799999999887753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=3.3e-05  Score=54.07  Aligned_cols=48  Identities=17%  Similarity=0.337  Sum_probs=38.1

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCC
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEM  237 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~  237 (371)
                      -|||+..+|......+.+-+|||+|...+++++.   +..||+|-++|.++
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence            5999999887644333345899999999999974   34799999999864

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00011  Score=56.86  Aligned_cols=50  Identities=16%  Similarity=0.245  Sum_probs=40.9

Q ss_pred             ceeEcCCcccccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceE
Q 017480          187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKI  240 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI  240 (371)
                      ..+.|||+...|..    .++-+|||+|+..++.+.   ....||.|..+|...|+.
T Consensus        22 ~~l~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          22 KSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HHTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             cCcCCccCCcchhc----ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            34789999988864    344589999999999985   246899999999988864

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00079  Score=52.71  Aligned_cols=53  Identities=9%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCcee
Q 017480          119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLIN  171 (371)
Q Consensus       119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~  171 (371)
                      .+.|.|+++.+.+||+...-|+-|.+++|..||..+..-|..+...+..||++
T Consensus        22 ~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~p   74 (98)
T d1wgma_          22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP   74 (98)
T ss_dssp             TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred             HhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcc
Confidence            58899999999999776545568999999999987665666677777777765

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=96.75  E-value=0.00045  Score=50.43  Aligned_cols=43  Identities=16%  Similarity=0.427  Sum_probs=36.2

Q ss_pred             EcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480          190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG  235 (371)
Q Consensus       190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~  235 (371)
                      .|||+...|..   .+++-+|||+|...++...  ....||+|..++.
T Consensus         7 ~C~IC~~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCccCCcCccC---CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            49999988864   3567899999999999987  4678999999875

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0044  Score=46.62  Aligned_cols=67  Identities=15%  Similarity=0.111  Sum_probs=59.1

Q ss_pred             EEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480            8 FIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ   77 (371)
Q Consensus         8 FVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l   77 (371)
                      -|=..+|+  ..+|-|+|+.|+.+|=+....+ |+.+++..|.|++++|+-+.++ --.||++++.|+|+-
T Consensus         4 ~Vl~~~~r--R~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~-R~sgLpnnakLELv~   71 (76)
T d2al3a1           4 SVLAPNGR--RHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQW-RFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEECTTSC--EEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBH-HHHCCCSSCEEEEEC
T ss_pred             EEECCCCc--EEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCcccee-eecCCCCCCEEEEEE
Confidence            45566775  5689999999999999999999 9999999999999999988776 889999999999863

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.26  E-value=0.001  Score=46.75  Aligned_cols=46  Identities=17%  Similarity=0.403  Sum_probs=38.0

Q ss_pred             eEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCc
Q 017480          189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEF  234 (371)
Q Consensus       189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f  234 (371)
                      ..|||+..+|......+.+-+|||+|...++.+.  ....||+|-.++
T Consensus         6 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            3599999999876666667789999999999996  356899997653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0019  Score=51.00  Aligned_cols=48  Identities=21%  Similarity=0.367  Sum_probs=37.8

Q ss_pred             EcCCcccccCC--------------ceeEEEEeccCccccHHHHHHhh-------cCCCCCCCCCcCCC
Q 017480          190 QCPITGLEFNG--------------KYRFVAMRTCGHVLSTKALKEVK-------SSSCLVCHEEFGEM  237 (371)
Q Consensus       190 ~CPVT~~e~ng--------------~~rfV~L~~CG~V~Se~alkevk-------~~~CpvCg~~f~~~  237 (371)
                      .|||+..+|..              ...++.+-+|||+|...||.++-       ...||+|-..|...
T Consensus        27 ~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            59999988753              23467788999999999999863       13799999988654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.00046  Score=48.93  Aligned_cols=44  Identities=18%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480          188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE  236 (371)
Q Consensus       188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~  236 (371)
                      .+.|||+...|..-    .+.+|||+|...+++.. ...||+|..++..
T Consensus         6 ~l~C~IC~~~~~~p----~~lpCgH~fC~~Ci~~~-~~~CP~Cr~~~~~   49 (56)
T d1bora_           6 FLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS-GMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS-SSSCSSCCSSSSC
T ss_pred             CCCCcccCcccCCC----EEecCCCHHhHHHHHcC-CCcCcCCCCcccC
Confidence            35899999988652    34589999999999753 5689999998863

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0087  Score=45.36  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             eEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480          203 RFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG  235 (371)
Q Consensus       203 rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~  235 (371)
                      ..+++-+|||+|-..+|...-  ...||+|-.+|.
T Consensus        50 ~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          50 CTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            457888999999999999973  578999999986

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.52  E-value=0.022  Score=41.78  Aligned_cols=51  Identities=14%  Similarity=0.236  Sum_probs=38.5

Q ss_pred             ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC-CCCCccCccCCCCCcee
Q 017480          120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK-NLPKQYSYIKGLKDLIN  171 (371)
Q Consensus       120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k-~~~~~~~HIksLKDlv~  171 (371)
                      ..|.|+++.+.+||+. .-|+.|.++.|.+||... ...+..++..+..||++
T Consensus         9 l~CpIc~~~m~dPV~~-~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p   60 (78)
T d1t1ha_           9 FRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             CCCcCcCchhhCceEc-cCCCcchHHHHHHHHHHCCCCCCcccccCCcccccc
Confidence            5799999999999665 799999999999998653 33445555555555543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0092  Score=45.28  Aligned_cols=47  Identities=19%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh-----h-----cCCCCCCCCC
Q 017480          186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV-----K-----SSSCLVCHEE  233 (371)
Q Consensus       186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev-----k-----~~~CpvCg~~  233 (371)
                      .+...|||+..++.+ ..++.+-+|||.|+..++++.     .     ...||.|+-+
T Consensus         3 ~~~~~C~IC~~~~~~-~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           3 SGSSGCKLCLGEYPV-EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             CSBCCCSSSCCCCBG-GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCCcCccCCCcccC-CceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            345679999988854 356667799999999999974     2     1369987654

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.088  Score=38.96  Aligned_cols=69  Identities=17%  Similarity=0.192  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC---CCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL---DESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L---~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      -.|-||-.+|.  .+.-.-..++||.+|.+.|...+.+...+.|+  |-.+.|   +++.|| .+.||.+.++|++.
T Consensus         6 ~~i~iRlPdG~--~~~~~F~~~~tl~~v~~~v~~~~~~~~~~~l~~~~Pr~~l~~~d~~~TL-~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           6 SKLRIRTPSGE--FLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSL-LEVKLFPQETLFLE   79 (82)
T ss_dssp             EEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHTCCSSSEEEEETTTTEETTTCCTTSBH-HHHCCCSEEEEEEE
T ss_pred             EEEEEECCCCC--EEEEEECCCCcHHHHHHHHHhcCCCCCceEEEecCcccccccccccCCH-HHCCCCCCCEEEEE
Confidence            46889999997  44455666889999999998877777788775  466677   346799 99999999998875

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.05  E-value=0.041  Score=40.50  Aligned_cols=35  Identities=26%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480          119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK  154 (371)
Q Consensus       119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k  154 (371)
                      ...|.|+++.+.+|| ...-|+-|.+..|.+||...
T Consensus         7 ~l~CpIc~~l~~dPv-~~~cGhtfc~~ci~~~l~~~   41 (80)
T d2c2la2           7 YLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRV   41 (80)
T ss_dssp             TTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHT
T ss_pred             cccCcCcCchhhhhc-ccCCcCeecHHHHHHHHhcC
Confidence            367999999999995 55899999999999999753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=92.91  E-value=0.022  Score=39.88  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=36.2

Q ss_pred             ceeEcCCcccccCCce-eEEEEeccCccccHHHHHHhh----cCCCCCCCCCcC
Q 017480          187 IRFQCPITGLEFNGKY-RFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFG  235 (371)
Q Consensus       187 ~~~~CPVT~~e~ng~~-rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~  235 (371)
                      ...+|+|+..++++.. ......+|+|+|-..+|.+.-    ...||+|..+|.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3457999998887542 222334567999999999862    458999999996

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.13  Score=39.05  Aligned_cols=69  Identities=10%  Similarity=0.077  Sum_probs=53.1

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCC--eeCC--CCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNG--KILD--ESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~G--k~L~--D~~tL~~~~~I~~~sTL~L~   76 (371)
                      .+|-||-.+|.....  .-..++||.+|...|...+.....++|+..-  +.|.  .+.|| .+.||.+..+|.|.
T Consensus        17 ~~i~iRlPdG~r~~r--~F~~~dtl~~l~~fv~~~~~~~~~f~l~~~~Pr~~~~~d~~~TL-~e~gl~p~~~L~v~   89 (96)
T d2cr5a1          17 VTVALRCPNGRVLRR--RFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGSSL-EDIGITVDTVLNVE   89 (96)
T ss_dssp             EEEEEECTTSCEEEE--EEESSSBTHHHHHHHHHHTCCTTTEEEECSSSCCBCCCCSSCBH-HHHTCSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEE--EECCcccHHHHHHHHHHhccCcccceeecCCCceecCccCCCcH-HHCCCCCCCEEEEe
Confidence            589999999974444  4445779999999997776667788887554  5563  36789 99999999988764

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.2  Score=39.92  Aligned_cols=69  Identities=14%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEe--CCeeC---CCCCCcccCCCCCCCCeEEEE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTL--NGKIL---DESTPLFKNPQIAPLSTLYLR   76 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~--~Gk~L---~D~~tL~~~~~I~~~sTL~L~   76 (371)
                      -.|-||-.+|..  +......++||.+|.+.|...+.....+.|+.  --+.|   +.+.|| .+.||.+..+|+|.
T Consensus        44 ~~l~iRlPdG~r--~~r~F~~~~tl~~l~~~v~~~~~~~~~~~L~~~fPr~~l~~~d~~~TL-~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          44 AQLMLRYPDGKR--EQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITL-QEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCE--EEEEEETTSCHHHHHHHHHHHHCCTTTEEEECSSSCCEETSSCSSSCT-TTTTCCSSBCCEEE
T ss_pred             eEEEEECCCCCE--EEEEeCCCCcHHHHHHHHHhcccCCcceEEeecccccccccccccCcH-HHcCCCCCCEEEEE
Confidence            478999999984  44444557799999999987766667777753  44555   346799 99999999988653

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.71  E-value=0.46  Score=35.50  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CCCCCceEEEeC--CeeCC-CCCCcccCCCCCCCCeE
Q 017480            5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQSLSSLYFTLN--GKILD-ESTPLFKNPQIAPLSTL   73 (371)
Q Consensus         5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~~~q~Li~~--Gk~L~-D~~tL~~~~~I~~~sTL   73 (371)
                      -.|-||..+|.  .+......++||.+|...|...  +.+...+.|+.+  -+.|+ ++.|| .+.||.+ ++|
T Consensus        15 t~I~iRlPdG~--~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL-~e~gL~~-s~v   84 (89)
T d1i42a_          15 TNIQIRLADGG--RLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTL-KEANLLN-AVI   84 (89)
T ss_dssp             EEEEEEETTTC--CEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCS-GGGTTCC-SEE
T ss_pred             EEEEEEcCCCC--EEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcH-HHCCCcC-ceE
Confidence            35778999997  4566667788999999999764  566777888876  56784 57899 9999985 445

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=0.92  Score=31.96  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=43.0

Q ss_pred             EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480           20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG   83 (371)
Q Consensus        20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~   83 (371)
                      ..++++..||.+|   |...+++.....+-.||..+.-+.  |.++-|++++.|++. +..|||
T Consensus         8 ~~~~~~~~tl~~l---l~~l~~~~~~vaV~vN~~ivpk~~--~~~~~L~~gD~ieIv-~~v~GG   65 (65)
T d1zud21           8 AMQCAAGQTVHEL---LEQLDQRQAGAALAINQQIVPREQ--WAQHIVQDGDQILLF-QVIAGG   65 (65)
T ss_dssp             EECCCTTCBHHHH---HHHHTCCCTTEEEEETTEECCGGG--TTTCBCCTTCEEEEE-ECCCCC
T ss_pred             EEEcCCCCcHHHH---HHHcCCCCCcEEEEECCEEcCHHH--HhhccCCCCCEEEEE-EEecCC
Confidence            5667777899988   555578888889999999886432  266778999999865 444554